Query 048755
Match_columns 674
No_of_seqs 296 out of 3335
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 22:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048755.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048755hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.8E-35 2E-39 317.1 19.6 261 1-279 160-446 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.3E-29 4.5E-34 277.6 12.0 235 1-278 158-419 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 1.8E-27 6.3E-32 286.6 21.2 236 1-247 155-407 (1249)
4 4fmz_A Internalin; leucine ric 99.9 6E-26 2.1E-30 233.3 21.4 304 305-672 41-344 (347)
5 4ecn_A Leucine-rich repeat pro 99.9 4.2E-26 1.4E-30 256.9 21.4 329 320-672 437-838 (876)
6 3t6q_A CD180 antigen; protein- 99.9 2.5E-25 8.6E-30 246.8 26.7 361 306-671 31-486 (606)
7 3vq2_A TLR4, TOLL-like recepto 99.9 1.5E-25 5.3E-30 248.6 24.1 351 305-672 29-484 (606)
8 4eco_A Uncharacterized protein 99.9 5E-26 1.7E-30 252.3 18.2 255 323-595 198-503 (636)
9 2z63_A TOLL-like receptor 4, v 99.9 4.4E-25 1.5E-29 243.1 25.5 351 306-672 26-505 (570)
10 1o6v_A Internalin A; bacterial 99.9 5.3E-25 1.8E-29 235.5 24.5 323 304-672 64-386 (466)
11 3rgz_A Protein brassinosteroid 99.9 2.8E-25 9.6E-30 252.1 22.0 342 308-672 294-715 (768)
12 4ecn_A Leucine-rich repeat pro 99.9 1.7E-25 6E-30 251.9 20.1 333 304-654 444-843 (876)
13 3rgz_A Protein brassinosteroid 99.9 2E-25 6.7E-30 253.4 19.2 340 307-672 199-549 (768)
14 4eco_A Uncharacterized protein 99.9 1.6E-25 5.5E-30 248.2 18.0 336 304-671 202-597 (636)
15 3t6q_A CD180 antigen; protein- 99.9 2.3E-24 7.8E-29 239.1 26.1 278 373-672 274-558 (606)
16 3v47_A TOLL-like receptor 5B a 99.9 1.5E-24 5.1E-29 231.8 21.6 349 306-672 28-406 (455)
17 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-24 4.1E-29 241.4 21.2 342 311-672 14-435 (606)
18 1z6t_A APAF-1, apoptotic prote 99.9 1.1E-24 3.6E-29 240.5 20.2 251 1-277 155-425 (591)
19 3o6n_A APL1; leucine-rich repe 99.9 2.1E-24 7.2E-29 225.4 21.5 300 307-671 44-349 (390)
20 2z81_A CD282 antigen, TOLL-lik 99.9 2.4E-24 8.3E-29 236.0 21.8 355 308-672 26-508 (549)
21 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-23 3.9E-28 228.9 25.6 143 311-459 3-150 (520)
22 2id5_A Lingo-1, leucine rich r 99.9 2.1E-23 7.1E-28 224.2 26.2 312 311-648 14-331 (477)
23 4fmz_A Internalin; leucine ric 99.9 1E-23 3.5E-28 216.6 22.5 285 301-648 59-344 (347)
24 2z81_A CD282 antigen, TOLL-lik 99.9 2.9E-24 9.9E-29 235.4 19.2 330 313-654 10-426 (549)
25 3oja_B Anopheles plasmodium-re 99.9 8.9E-24 3.1E-28 232.9 22.1 300 308-672 51-356 (597)
26 2z63_A TOLL-like receptor 4, v 99.9 4.5E-24 1.5E-28 235.1 18.9 354 305-672 49-529 (570)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.6E-23 1.9E-27 225.3 25.9 145 309-459 32-181 (562)
28 3bz5_A Internalin-J, INLJ; leu 99.9 8.9E-23 3E-27 216.3 25.4 305 305-653 39-354 (457)
29 1o6v_A Internalin A; bacterial 99.9 1E-22 3.4E-27 217.8 24.4 306 304-654 86-391 (466)
30 3j0a_A TOLL-like receptor 5; m 99.9 7.1E-23 2.4E-27 234.9 24.8 317 306-647 22-372 (844)
31 3o6n_A APL1; leucine-rich repe 99.9 5.8E-23 2E-27 214.5 21.1 287 324-672 39-329 (390)
32 3j0a_A TOLL-like receptor 5; m 99.9 2.4E-22 8.2E-27 230.5 25.3 345 304-671 44-436 (844)
33 1ziw_A TOLL-like receptor 3; i 99.9 5.3E-22 1.8E-26 223.1 26.8 359 307-671 24-464 (680)
34 3v47_A TOLL-like receptor 5B a 99.9 1.5E-22 5.2E-27 216.2 21.0 326 304-654 50-412 (455)
35 1ziw_A TOLL-like receptor 3; i 99.9 3.3E-22 1.1E-26 224.9 24.4 147 311-459 7-157 (680)
36 3oja_B Anopheles plasmodium-re 99.9 2.2E-22 7.4E-27 221.8 21.1 287 324-672 45-335 (597)
37 2id5_A Lingo-1, leucine rich r 99.9 5.4E-22 1.8E-26 213.1 22.8 294 305-621 29-331 (477)
38 2z7x_B TOLL-like receptor 1, v 99.9 2.5E-22 8.4E-27 218.4 19.9 345 308-672 21-479 (520)
39 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-21 5.5E-26 217.7 24.4 353 305-670 49-576 (635)
40 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-21 6.4E-26 206.2 21.2 303 328-671 40-349 (457)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.4E-21 1.8E-25 209.5 25.3 128 327-460 28-159 (562)
42 1xku_A Decorin; proteoglycan, 99.9 7.7E-21 2.6E-25 193.6 23.8 190 309-516 32-226 (330)
43 2ft3_A Biglycan; proteoglycan, 99.9 3.1E-21 1.1E-25 196.6 20.0 121 309-432 34-157 (332)
44 1xku_A Decorin; proteoglycan, 99.9 1.1E-20 3.8E-25 192.4 23.0 290 330-671 31-329 (330)
45 4fcg_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 195.5 17.4 229 353-645 80-309 (328)
46 4g8a_A TOLL-like receptor 4; l 99.9 1.6E-20 5.3E-25 209.7 24.3 149 312-461 35-187 (635)
47 1ogq_A PGIP-2, polygalacturona 99.9 3.7E-21 1.3E-25 193.9 14.4 247 331-626 51-307 (313)
48 1jl5_A Outer protein YOPM; leu 99.8 2E-19 6.8E-24 190.4 25.7 279 307-648 90-368 (454)
49 1jl5_A Outer protein YOPM; leu 99.8 1.8E-19 6.3E-24 190.7 23.9 305 306-671 109-426 (454)
50 4fcg_A Uncharacterized protein 99.8 3.4E-20 1.2E-24 187.9 17.3 230 376-670 80-310 (328)
51 1ogq_A PGIP-2, polygalacturona 99.8 2.6E-20 8.9E-25 187.6 14.4 246 308-593 50-305 (313)
52 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-19 4E-24 184.9 18.9 295 330-648 33-331 (332)
53 2z80_A TOLL-like receptor 2, v 99.8 8.1E-20 2.8E-24 187.8 17.8 280 329-653 30-317 (353)
54 3g06_A SSPH2 (leucine-rich rep 99.8 1.8E-19 6.2E-24 196.5 21.2 257 309-650 41-297 (622)
55 2z66_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 184.6 15.2 241 311-589 10-258 (306)
56 3zyj_A Leucine-rich repeat-con 99.8 2.2E-19 7.6E-24 190.3 18.9 240 310-589 45-289 (440)
57 3zyi_A Leucine-rich repeat-con 99.8 2.4E-19 8.1E-24 190.8 18.8 240 310-589 56-300 (452)
58 2z80_A TOLL-like receptor 2, v 99.8 1.8E-19 6.1E-24 185.2 16.8 194 312-518 35-234 (353)
59 3g06_A SSPH2 (leucine-rich rep 99.8 7.8E-19 2.7E-23 191.5 21.2 256 330-672 40-295 (622)
60 1ozn_A Reticulon 4 receptor; N 99.8 6.5E-19 2.2E-23 175.2 17.7 220 311-567 14-239 (285)
61 3o53_A Protein LRIM1, AGAP0063 99.8 9.3E-20 3.2E-24 184.1 5.8 268 328-652 32-301 (317)
62 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-18 5.3E-23 172.5 13.8 200 305-517 29-236 (285)
63 3zyi_A Leucine-rich repeat-con 99.8 1.2E-17 4E-22 177.7 17.8 198 305-517 72-277 (452)
64 1p9a_G Platelet glycoprotein I 99.8 1.7E-17 5.9E-22 164.7 17.6 197 306-517 8-206 (290)
65 3zyj_A Leucine-rich repeat-con 99.7 1.6E-17 5.4E-22 176.0 17.5 198 305-517 61-266 (440)
66 2o6q_A Variable lymphocyte rec 99.7 3.5E-17 1.2E-21 161.2 18.7 195 309-517 17-216 (270)
67 2z66_A Variable lymphocyte rec 99.7 1.4E-17 4.9E-22 167.4 15.4 201 305-518 25-235 (306)
68 1h6u_A Internalin H; cell adhe 99.7 4.6E-17 1.6E-21 163.3 18.8 191 306-518 39-229 (308)
69 3ogk_B Coronatine-insensitive 99.7 4.7E-19 1.6E-23 195.9 4.0 118 550-672 375-499 (592)
70 1z7x_W Ribonuclease inhibitor; 99.7 3.8E-19 1.3E-23 190.1 2.4 35 355-389 86-125 (461)
71 1z7x_W Ribonuclease inhibitor; 99.7 8.7E-20 3E-24 195.1 -4.0 351 308-671 3-408 (461)
72 2p1m_B Transport inhibitor res 99.7 1.4E-18 4.6E-23 192.3 5.2 344 307-672 104-517 (594)
73 3o53_A Protein LRIM1, AGAP0063 99.7 5.4E-18 1.8E-22 171.2 9.1 242 307-595 33-278 (317)
74 3ogk_B Coronatine-insensitive 99.7 1.5E-18 5.1E-23 191.8 5.0 322 307-648 163-524 (592)
75 2z62_A TOLL-like receptor 4, v 99.7 7.2E-17 2.5E-21 159.6 16.5 190 314-514 13-208 (276)
76 2z62_A TOLL-like receptor 4, v 99.7 1.7E-16 5.7E-21 157.0 16.0 199 306-518 26-236 (276)
77 1h6u_A Internalin H; cell adhe 99.7 5.7E-17 2E-21 162.6 12.2 170 326-517 37-206 (308)
78 3rfs_A Internalin B, repeat mo 99.7 3E-17 1E-21 161.8 9.7 172 328-515 39-214 (272)
79 3oja_A Leucine-rich immune mol 99.7 1.1E-17 3.6E-22 179.0 6.8 166 330-515 34-200 (487)
80 3rfs_A Internalin B, repeat mo 99.7 2E-16 6.9E-21 155.8 14.0 192 305-517 38-233 (272)
81 3oja_A Leucine-rich immune mol 99.7 7.7E-17 2.6E-21 172.3 11.6 237 306-589 32-272 (487)
82 2xwt_C Thyrotropin receptor; s 99.7 2E-16 6.8E-21 152.7 12.1 194 306-515 29-235 (239)
83 1p9a_G Platelet glycoprotein I 99.7 6.1E-16 2.1E-20 153.5 15.8 174 328-517 8-183 (290)
84 2o6q_A Variable lymphocyte rec 99.7 1.6E-15 5.3E-20 149.3 18.5 178 306-496 35-218 (270)
85 3m19_A Variable lymphocyte rec 99.7 1.6E-15 5.4E-20 147.5 17.9 176 308-497 14-193 (251)
86 1wwl_A Monocyte differentiatio 99.7 2.2E-16 7.6E-21 158.9 11.9 216 310-564 65-307 (312)
87 2ast_B S-phase kinase-associat 99.7 5.6E-17 1.9E-21 165.5 7.2 148 331-493 48-205 (336)
88 1h6t_A Internalin B; cell adhe 99.6 2.4E-15 8.1E-20 149.4 17.0 170 307-497 45-214 (291)
89 1h6t_A Internalin B; cell adhe 99.6 9.7E-16 3.3E-20 152.2 13.2 186 311-518 27-212 (291)
90 2ast_B S-phase kinase-associat 99.6 8.6E-17 3E-21 164.1 5.6 195 310-516 49-257 (336)
91 2xwt_C Thyrotropin receptor; s 99.6 7E-16 2.4E-20 148.9 10.2 137 320-459 23-168 (239)
92 1wwl_A Monocyte differentiatio 99.6 1.4E-15 4.9E-20 152.9 12.6 194 307-517 94-307 (312)
93 2p1m_B Transport inhibitor res 99.6 3.4E-17 1.2E-21 181.0 -2.3 358 307-672 65-492 (594)
94 2o6s_A Variable lymphocyte rec 99.6 7E-15 2.4E-19 138.4 13.7 176 311-507 10-190 (208)
95 1m9s_A Internalin B; cell inva 99.6 1.1E-14 3.8E-19 158.6 15.9 174 305-499 40-213 (605)
96 4ay9_X Follicle-stimulating ho 99.6 8.7E-15 3E-19 149.7 13.2 235 311-588 12-255 (350)
97 1m9s_A Internalin B; cell inva 99.6 4.2E-15 1.4E-19 162.0 11.3 189 308-518 21-209 (605)
98 4ay9_X Follicle-stimulating ho 99.6 4.8E-14 1.6E-18 144.2 18.6 236 357-645 12-254 (350)
99 3m19_A Variable lymphocyte rec 99.6 4.8E-14 1.7E-18 136.9 17.0 153 306-459 33-191 (251)
100 4glp_A Monocyte differentiatio 99.6 1.4E-15 4.7E-20 153.0 6.0 177 328-516 89-282 (310)
101 3e6j_A Variable lymphocyte rec 99.6 4.4E-14 1.5E-18 134.9 16.2 148 310-459 21-171 (229)
102 4glp_A Monocyte differentiatio 99.6 1.4E-14 4.9E-19 145.5 12.6 193 308-517 91-305 (310)
103 2ca6_A RAN GTPase-activating p 99.6 1E-15 3.4E-20 159.3 4.0 190 320-517 21-255 (386)
104 1xeu_A Internalin C; cellular 99.6 1.4E-14 4.7E-19 141.5 11.7 172 306-499 17-188 (263)
105 4ezg_A Putative uncharacterize 99.6 3.1E-14 1.1E-18 132.6 13.4 125 330-459 44-171 (197)
106 3cvr_A Invasion plasmid antige 99.5 5.4E-14 1.9E-18 151.4 16.5 182 309-518 60-242 (571)
107 2v9t_B SLIT homolog 2 protein 99.5 6.6E-14 2.3E-18 132.7 14.3 147 311-459 14-164 (220)
108 2ca6_A RAN GTPase-activating p 99.5 1.3E-15 4.4E-20 158.4 1.9 158 350-516 28-226 (386)
109 4ezg_A Putative uncharacterize 99.5 3.4E-14 1.2E-18 132.3 11.4 150 351-517 41-192 (197)
110 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4E-18 131.0 13.9 147 311-459 14-165 (220)
111 1xeu_A Internalin C; cellular 99.5 3.6E-13 1.2E-17 131.4 14.3 147 305-459 38-184 (263)
112 3goz_A Leucine-rich repeat-con 99.5 7.1E-15 2.4E-19 151.2 2.3 128 332-459 24-179 (362)
113 2xot_A Amphoterin-induced prot 99.5 3.2E-13 1.1E-17 138.6 13.8 170 311-494 21-200 (361)
114 3goz_A Leucine-rich repeat-con 99.5 8.5E-14 2.9E-18 143.1 9.0 259 335-621 3-295 (362)
115 3cvr_A Invasion plasmid antige 99.5 5.6E-13 1.9E-17 143.5 15.3 181 330-569 59-246 (571)
116 2o6s_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 126.6 10.9 146 306-459 26-177 (208)
117 2xot_A Amphoterin-induced prot 99.4 7E-13 2.4E-17 136.1 13.0 154 305-459 36-201 (361)
118 1dce_A Protein (RAB geranylger 99.4 2.8E-15 9.6E-20 162.4 -5.4 119 378-511 442-565 (567)
119 2ell_A Acidic leucine-rich nuc 99.4 1.1E-12 3.6E-17 118.8 12.0 139 353-501 23-165 (168)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 1.7E-12 5.8E-17 122.9 13.9 146 333-494 14-164 (220)
121 2v9t_B SLIT homolog 2 protein 99.4 1.4E-12 4.9E-17 123.4 13.2 122 334-459 15-140 (220)
122 2ell_A Acidic leucine-rich nuc 99.4 1.3E-12 4.4E-17 118.2 11.0 127 330-459 24-159 (168)
123 3e6j_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 121.2 14.5 149 331-496 20-172 (229)
124 2je0_A Acidic leucine-rich nuc 99.4 2.7E-12 9.3E-17 113.5 10.6 102 351-454 39-147 (149)
125 2je0_A Acidic leucine-rich nuc 99.3 2.3E-12 7.7E-17 114.0 8.6 105 354-459 17-125 (149)
126 1a9n_A U2A', U2A'; complex (nu 99.3 2E-12 6.8E-17 117.9 7.7 102 328-432 17-123 (176)
127 1a9n_A U2A', U2A'; complex (nu 99.3 5.4E-12 1.9E-16 115.0 9.6 126 306-433 17-151 (176)
128 2wfh_A SLIT homolog 2 protein 99.3 2.5E-11 8.6E-16 112.1 12.7 122 334-459 14-138 (193)
129 4b8c_D Glucose-repressible alc 99.3 6E-12 2.1E-16 140.7 9.3 150 308-460 173-329 (727)
130 1w8a_A SLIT protein; signaling 99.3 2.7E-11 9.2E-16 112.0 11.7 121 311-432 11-136 (192)
131 2wfh_A SLIT homolog 2 protein 99.3 3.9E-11 1.3E-15 110.8 12.4 122 311-434 13-138 (193)
132 1w8a_A SLIT protein; signaling 99.2 2.6E-11 8.8E-16 112.1 11.1 123 333-459 11-138 (192)
133 2o6r_A Variable lymphocyte rec 99.2 8.5E-11 2.9E-15 107.1 12.9 121 311-432 10-134 (177)
134 4b8c_D Glucose-repressible alc 99.2 2.9E-12 9.9E-17 143.3 3.4 111 328-439 222-333 (727)
135 1dce_A Protein (RAB geranylger 99.2 8.1E-11 2.8E-15 127.4 11.3 101 355-459 442-545 (567)
136 2o6r_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 103.2 12.7 124 332-459 9-136 (177)
137 1ds9_A Outer arm dynein; leuci 99.1 1.7E-12 6E-17 120.8 -3.9 103 328-432 46-150 (198)
138 1ds9_A Outer arm dynein; leuci 99.1 2E-12 7E-17 120.3 -4.4 125 331-459 24-152 (198)
139 1w5s_A Origin recognition comp 99.1 2.8E-09 9.7E-14 111.5 17.6 217 1-232 60-320 (412)
140 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4.1E-14 110.4 12.6 168 329-512 100-327 (329)
141 2r9u_A Variable lymphocyte rec 99.0 1E-09 3.5E-14 99.3 10.3 101 311-412 15-118 (174)
142 2r9u_A Variable lymphocyte rec 99.0 1.9E-09 6.5E-14 97.5 10.5 100 357-459 15-117 (174)
143 3g39_A Variable lymphocyte rec 99.0 1.9E-09 6.5E-14 97.2 10.3 101 356-459 11-114 (170)
144 3g39_A Variable lymphocyte rec 98.9 4.1E-09 1.4E-13 95.0 11.2 100 311-411 12-114 (170)
145 3sb4_A Hypothetical leucine ri 98.9 1.3E-09 4.3E-14 110.3 8.2 284 353-668 24-328 (329)
146 2qen_A Walker-type ATPase; unk 98.9 7.1E-09 2.4E-13 105.8 13.5 167 1-176 39-250 (350)
147 2fna_A Conserved hypothetical 98.9 1.1E-08 3.7E-13 104.7 12.4 167 1-176 38-254 (357)
148 2qby_B CDC6 homolog 3, cell di 98.8 5.7E-08 2E-12 100.4 14.8 189 1-190 53-270 (384)
149 3un9_A NLR family member X1; l 98.7 4.3E-09 1.5E-13 107.6 2.8 158 330-496 72-252 (372)
150 1njg_A DNA polymerase III subu 98.7 1.6E-07 5.4E-12 90.3 12.4 104 71-175 125-231 (250)
151 4fdw_A Leucine rich hypothetic 98.6 7.1E-07 2.4E-11 92.1 17.5 212 330-589 135-355 (401)
152 2qby_A CDC6 homolog 1, cell di 98.6 1.7E-07 5.7E-12 97.0 12.3 171 1-171 53-244 (386)
153 2chg_A Replication factor C sm 98.6 3E-07 1E-11 86.9 13.1 158 2-175 47-207 (226)
154 2ifg_A High affinity nerve gro 98.5 1.8E-07 6.2E-12 95.1 10.0 96 335-432 13-113 (347)
155 4fdw_A Leucine rich hypothetic 98.5 4E-06 1.4E-10 86.5 19.6 263 329-646 112-379 (401)
156 2v1u_A Cell division control p 98.5 5.5E-07 1.9E-11 93.1 13.1 190 1-190 52-276 (387)
157 2ifg_A High affinity nerve gro 98.5 2.5E-07 8.6E-12 94.1 10.0 101 312-412 12-116 (347)
158 4fs7_A Uncharacterized protein 98.5 5.3E-06 1.8E-10 85.8 19.4 299 328-666 69-393 (394)
159 3un9_A NLR family member X1; l 98.4 3.1E-08 1.1E-12 101.2 0.8 151 308-459 72-251 (372)
160 1fnn_A CDC6P, cell division co 98.4 2.5E-06 8.4E-11 88.2 14.9 170 2-172 53-247 (389)
161 1sxj_B Activator 1 37 kDa subu 98.3 3.1E-06 1E-10 85.0 10.5 155 1-170 50-207 (323)
162 4fs7_A Uncharacterized protein 98.3 2.5E-05 8.6E-10 80.7 17.7 291 341-670 58-375 (394)
163 2ra8_A Uncharacterized protein 98.2 1E-06 3.5E-11 89.1 5.0 38 350-389 168-205 (362)
164 3e4g_A ATP synthase subunit S, 98.2 4.6E-07 1.6E-11 80.2 1.5 91 553-653 61-155 (176)
165 2ra8_A Uncharacterized protein 98.1 1.2E-06 4.2E-11 88.6 4.8 156 351-516 136-317 (362)
166 1iqp_A RFCS; clamp loader, ext 98.0 1.1E-05 3.7E-10 81.1 9.2 158 2-175 55-215 (327)
167 4gt6_A Cell surface protein; l 98.0 0.0008 2.7E-08 69.3 23.3 119 331-455 65-190 (394)
168 3e4g_A ATP synthase subunit S, 98.0 3.8E-06 1.3E-10 74.4 4.7 84 354-437 61-154 (176)
169 1d2n_A N-ethylmaleimide-sensit 98.0 0.00013 4.6E-09 70.8 15.3 169 2-195 73-266 (272)
170 3te6_A Regulatory protein SIR3 97.9 9.7E-05 3.3E-09 72.5 13.4 141 2-142 54-212 (318)
171 2chq_A Replication factor C sm 97.8 0.00012 4.1E-09 73.1 11.3 154 2-173 47-205 (319)
172 1io0_A Tropomodulin; LRR prote 97.7 3.1E-05 1.1E-09 70.3 5.9 110 350-459 32-163 (185)
173 1hqc_A RUVB; extended AAA-ATPa 97.7 0.00014 4.7E-09 72.9 10.1 147 2-176 47-215 (324)
174 4gt6_A Cell surface protein; l 97.7 0.0013 4.4E-08 67.7 17.5 292 310-646 66-366 (394)
175 1jr3_A DNA polymerase III subu 97.6 0.00015 5.2E-09 74.1 10.2 103 71-174 118-223 (373)
176 1io0_A Tropomodulin; LRR prote 97.6 2.8E-05 9.5E-10 70.6 4.0 105 328-432 34-161 (185)
177 1a5t_A Delta prime, HOLB; zinc 97.6 0.00041 1.4E-08 69.5 12.7 95 71-171 107-204 (334)
178 4h09_A Hypothetical leucine ri 97.6 0.0022 7.5E-08 65.6 18.5 122 328-457 44-168 (379)
179 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00094 3.2E-08 64.3 14.6 151 2-172 48-222 (262)
180 3rw6_A Nuclear RNA export fact 97.6 7.8E-05 2.7E-09 71.3 6.5 78 351-428 167-257 (267)
181 3h4m_A Proteasome-activating n 97.6 0.00066 2.2E-08 66.4 13.2 149 2-172 60-231 (285)
182 3bos_A Putative DNA replicatio 97.5 6.7E-05 2.3E-09 71.4 4.5 143 2-172 61-217 (242)
183 2z4s_A Chromosomal replication 97.4 0.00031 1E-08 73.2 8.5 154 2-173 139-307 (440)
184 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.0043 1.5E-07 61.6 16.5 151 2-172 54-223 (322)
185 3pvs_A Replication-associated 97.4 0.0013 4.5E-08 68.3 13.0 150 2-175 59-218 (447)
186 1sxj_D Activator 1 41 kDa subu 97.3 0.00049 1.7E-08 69.7 9.3 165 2-172 67-235 (353)
187 3eie_A Vacuolar protein sortin 97.3 0.0023 7.9E-08 63.7 13.9 150 2-172 60-228 (322)
188 3rw6_A Nuclear RNA export fact 97.3 0.00027 9.1E-09 67.6 6.2 79 374-453 167-257 (267)
189 3d8b_A Fidgetin-like protein 1 97.3 0.0037 1.3E-07 63.1 14.5 151 2-173 126-296 (357)
190 1jbk_A CLPB protein; beta barr 97.2 0.00036 1.2E-08 63.6 5.8 122 2-137 52-194 (195)
191 3u61_B DNA polymerase accessor 97.2 0.00084 2.9E-08 67.0 8.8 145 2-170 57-214 (324)
192 2qp9_X Vacuolar protein sortin 97.2 0.0032 1.1E-07 63.5 12.6 150 2-172 93-261 (355)
193 3uk6_A RUVB-like 2; hexameric 97.1 0.0016 5.4E-08 66.4 10.0 51 121-172 252-303 (368)
194 3syl_A Protein CBBX; photosynt 97.1 0.00077 2.6E-08 66.8 7.3 125 2-142 76-218 (309)
195 3pfi_A Holliday junction ATP-d 97.1 0.0034 1.2E-07 63.0 11.8 144 2-174 64-229 (338)
196 1sxj_E Activator 1 40 kDa subu 97.0 0.0011 3.7E-08 67.2 8.0 101 72-173 134-238 (354)
197 3vfd_A Spastin; ATPase, microt 97.0 0.01 3.6E-07 60.6 14.8 150 2-172 157-326 (389)
198 1sxj_A Activator 1 95 kDa subu 96.9 0.00094 3.2E-08 71.2 6.7 159 2-171 86-252 (516)
199 4b4t_J 26S protease regulatory 96.9 0.012 4.1E-07 59.2 14.1 143 1-165 190-354 (405)
200 2zan_A Vacuolar protein sortin 96.9 0.012 4E-07 61.3 14.6 151 2-172 176-345 (444)
201 3b9p_A CG5977-PA, isoform A; A 96.8 0.021 7.1E-07 55.9 15.1 150 2-172 63-233 (297)
202 1l8q_A Chromosomal replication 96.8 0.0028 9.7E-08 63.1 8.5 145 2-167 46-203 (324)
203 1sxj_C Activator 1 40 kDa subu 96.8 0.0051 1.8E-07 61.7 10.4 150 2-167 55-207 (340)
204 4h09_A Hypothetical leucine ri 96.7 0.16 5.5E-06 51.5 21.2 75 308-387 46-123 (379)
205 3ec2_A DNA replication protein 96.6 0.0014 4.9E-08 58.9 4.0 92 2-110 47-143 (180)
206 2gno_A DNA polymerase III, gam 96.5 0.0064 2.2E-07 59.6 8.3 122 2-141 27-152 (305)
207 1lv7_A FTSH; alpha/beta domain 96.4 0.029 9.7E-07 53.6 12.6 148 2-171 54-224 (257)
208 4b4t_L 26S protease subunit RP 96.4 0.022 7.6E-07 58.3 12.2 143 1-165 223-387 (437)
209 4b4t_H 26S protease regulatory 96.4 0.056 1.9E-06 55.2 15.0 142 2-165 252-415 (467)
210 4b4t_I 26S protease regulatory 96.3 0.029 9.8E-07 56.8 12.2 142 2-165 225-388 (437)
211 3cf0_A Transitional endoplasmi 96.3 0.024 8.1E-07 55.6 11.5 144 2-167 58-223 (301)
212 4b4t_M 26S protease regulatory 96.2 0.015 5.2E-07 59.4 9.2 143 1-165 223-387 (434)
213 2ce7_A Cell division protein F 96.0 0.068 2.3E-06 55.6 13.7 142 2-165 58-221 (476)
214 4b4t_K 26S protease regulatory 95.9 0.11 3.7E-06 53.1 14.1 143 1-165 214-379 (428)
215 4fcw_A Chaperone protein CLPB; 95.9 0.023 7.7E-07 56.1 8.8 76 2-84 56-131 (311)
216 2w58_A DNAI, primosome compone 95.8 0.012 4.1E-07 53.9 6.0 90 2-109 63-158 (202)
217 3n70_A Transport activator; si 95.6 0.0033 1.1E-07 54.1 1.3 18 2-19 33-50 (145)
218 3hu3_A Transitional endoplasmi 95.4 0.079 2.7E-06 55.5 11.1 148 2-171 247-414 (489)
219 3pxg_A Negative regulator of g 95.3 0.034 1.2E-06 58.2 8.3 119 2-142 210-339 (468)
220 1ofh_A ATP-dependent HSL prote 95.3 0.056 1.9E-06 53.1 9.4 19 121-139 195-213 (310)
221 2r62_A Cell division protease 95.2 0.014 4.8E-07 56.2 4.6 121 2-142 53-197 (268)
222 1qvr_A CLPB protein; coiled co 95.2 0.036 1.2E-06 63.0 8.6 126 2-141 200-345 (854)
223 3io5_A Recombination and repai 95.2 0.093 3.2E-06 50.7 9.9 78 2-84 37-123 (333)
224 1in4_A RUVB, holliday junction 94.8 0.25 8.7E-06 49.0 12.6 53 120-173 172-224 (334)
225 3pxi_A Negative regulator of g 94.6 0.016 5.5E-07 65.0 3.4 119 2-141 530-675 (758)
226 3cf2_A TER ATPase, transitiona 94.5 0.12 4E-06 57.3 9.9 142 2-165 247-407 (806)
227 2p65_A Hypothetical protein PF 94.5 0.031 1.1E-06 50.0 4.7 18 2-19 52-69 (187)
228 1ixz_A ATP-dependent metallopr 94.4 0.43 1.5E-05 45.1 12.7 142 2-165 58-221 (254)
229 2x8a_A Nuclear valosin-contain 94.3 0.4 1.4E-05 45.9 12.3 121 2-142 53-192 (274)
230 3rfe_A Platelet glycoprotein I 94.3 0.065 2.2E-06 44.8 5.7 54 312-366 12-67 (130)
231 3m6a_A ATP-dependent protease 94.2 0.078 2.7E-06 56.6 7.7 18 2-19 117-134 (543)
232 1n0w_A DNA repair protein RAD5 94.2 0.18 6.1E-06 47.3 9.5 81 2-83 33-130 (243)
233 2c9o_A RUVB-like 1; hexameric 94.2 0.13 4.3E-06 53.7 9.1 96 75-172 298-410 (456)
234 1iy2_A ATP-dependent metallopr 94.2 0.27 9.3E-06 47.3 10.8 142 2-165 82-245 (278)
235 2kjq_A DNAA-related protein; s 94.1 0.015 5.3E-07 50.1 1.4 30 2-33 45-74 (149)
236 2cvh_A DNA repair and recombin 94.0 0.2 6.9E-06 46.1 9.2 35 2-41 29-63 (220)
237 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.11 3.7E-06 48.5 7.3 38 2-43 32-69 (235)
238 1g5t_A COB(I)alamin adenosyltr 93.8 0.043 1.5E-06 49.1 3.9 109 2-112 37-165 (196)
239 3pxi_A Negative regulator of g 93.7 0.12 4E-06 57.9 8.3 119 2-142 210-339 (758)
240 1v5w_A DMC1, meiotic recombina 93.6 0.26 8.8E-06 49.1 9.7 49 2-51 131-183 (343)
241 2z43_A DNA repair and recombin 93.6 0.19 6.4E-06 49.7 8.6 80 2-82 116-213 (324)
242 2vhj_A Ntpase P4, P4; non- hyd 93.6 0.08 2.7E-06 51.4 5.6 61 1-83 131-193 (331)
243 2i1q_A DNA repair and recombin 93.4 0.24 8.3E-06 48.8 9.1 49 2-51 107-169 (322)
244 1r6b_X CLPA protein; AAA+, N-t 93.3 0.41 1.4E-05 53.5 11.8 126 2-141 216-362 (758)
245 2dhr_A FTSH; AAA+ protein, hex 93.2 0.4 1.4E-05 50.1 10.6 142 2-165 73-236 (499)
246 3co5_A Putative two-component 92.9 0.0096 3.3E-07 51.0 -1.8 17 2-18 36-52 (143)
247 3rfe_A Platelet glycoprotein I 92.9 0.14 4.8E-06 42.7 5.4 54 403-459 12-67 (130)
248 1r6b_X CLPA protein; AAA+, N-t 92.8 0.1 3.5E-06 58.4 5.8 73 2-84 497-569 (758)
249 3hr8_A Protein RECA; alpha and 92.7 0.38 1.3E-05 47.8 9.2 76 2-84 70-151 (356)
250 3lda_A DNA repair protein RAD5 92.6 0.36 1.2E-05 49.0 9.0 80 2-82 187-283 (400)
251 3t15_A Ribulose bisphosphate c 92.4 0.086 3E-06 51.3 4.1 19 2-20 45-63 (293)
252 1pgv_A TMD-1, tropomodulin TMD 92.3 0.21 7.2E-06 44.8 6.0 106 353-458 40-168 (197)
253 1xp8_A RECA protein, recombina 92.3 0.42 1.4E-05 47.8 8.9 75 2-83 83-163 (366)
254 2bjv_A PSP operon transcriptio 92.3 0.096 3.3E-06 50.1 4.1 31 2-34 38-68 (265)
255 1u94_A RECA protein, recombina 92.2 0.42 1.4E-05 47.6 8.8 74 2-82 72-151 (356)
256 1jr3_D DNA polymerase III, del 92.1 1.1 3.7E-05 44.6 11.8 100 71-171 75-184 (343)
257 1um8_A ATP-dependent CLP prote 92.0 0.7 2.4E-05 46.6 10.4 17 2-18 81-97 (376)
258 1ojl_A Transcriptional regulat 91.8 0.23 7.9E-06 48.5 6.3 29 2-33 34-63 (304)
259 1sky_E F1-ATPase, F1-ATP synth 91.7 0.38 1.3E-05 49.4 7.9 80 2-82 160-255 (473)
260 2zr9_A Protein RECA, recombina 91.7 0.53 1.8E-05 46.8 8.8 75 2-83 70-150 (349)
261 1pgv_A TMD-1, tropomodulin TMD 91.4 0.24 8.1E-06 44.5 5.3 103 330-432 41-167 (197)
262 2qgz_A Helicase loader, putati 91.0 0.17 5.8E-06 49.5 4.4 28 2-31 161-189 (308)
263 1qvr_A CLPB protein; coiled co 90.9 0.25 8.4E-06 56.1 6.2 30 2-33 597-626 (854)
264 3lw7_A Adenylate kinase relate 90.6 0.77 2.6E-05 40.1 8.2 13 1-13 9-21 (179)
265 1fx0_B ATP synthase beta chain 90.5 0.74 2.5E-05 47.4 8.6 80 2-82 174-276 (498)
266 4akg_A Glutathione S-transfera 89.6 3.9 0.00013 51.6 15.6 71 2-82 1276-1346(2695)
267 2ck3_D ATP synthase subunit be 89.6 1.4 4.7E-05 45.2 9.7 80 2-82 162-263 (482)
268 4a74_A DNA repair and recombin 89.5 1.4 4.7E-05 40.7 9.2 47 2-49 34-84 (231)
269 3ice_A Transcription terminati 89.5 0.29 1E-05 48.7 4.5 82 2-84 183-273 (422)
270 1ypw_A Transitional endoplasmi 89.0 1.6 5.5E-05 48.9 10.7 121 2-142 247-386 (806)
271 3bh0_A DNAB-like replicative h 89.0 1.9 6.4E-05 42.2 10.1 42 2-47 77-118 (315)
272 2px0_A Flagellar biosynthesis 88.9 0.91 3.1E-05 43.9 7.6 77 2-81 114-191 (296)
273 3vr4_D V-type sodium ATPase su 88.3 0.78 2.7E-05 46.7 6.8 81 2-82 160-258 (465)
274 1pzn_A RAD51, DNA repair and r 88.2 1.3 4.4E-05 44.0 8.4 47 2-49 140-190 (349)
275 3gqb_B V-type ATP synthase bet 87.8 0.82 2.8E-05 46.5 6.6 81 2-82 156-261 (464)
276 3cwq_A Para family chromosome 87.3 0.61 2.1E-05 42.5 5.0 34 2-38 10-43 (209)
277 2b8t_A Thymidine kinase; deoxy 87.1 0.23 7.8E-06 45.8 2.0 101 2-111 21-127 (223)
278 3hjn_A DTMP kinase, thymidylat 87.1 1.9 6.4E-05 38.8 8.0 44 2-47 9-52 (197)
279 2c61_A A-type ATP synthase non 86.7 0.83 2.8E-05 46.8 6.0 81 2-82 161-259 (469)
280 1qhx_A CPT, protein (chloramph 86.7 0.29 9.9E-06 43.3 2.4 18 1-18 11-28 (178)
281 1vma_A Cell division protein F 85.8 2.4 8.3E-05 41.0 8.6 78 2-82 113-196 (306)
282 2dr3_A UPF0273 protein PH0284; 85.7 2.1 7.3E-05 39.8 8.1 38 2-43 32-69 (247)
283 3l0o_A Transcription terminati 85.5 0.27 9.1E-06 48.9 1.5 82 2-84 184-274 (427)
284 1j8m_F SRP54, signal recogniti 84.9 2.7 9.3E-05 40.5 8.5 79 2-82 107-190 (297)
285 1ls1_A Signal recognition part 84.6 2.6 8.9E-05 40.6 8.2 78 2-81 107-189 (295)
286 4dzz_A Plasmid partitioning pr 84.6 0.89 3E-05 41.1 4.7 33 2-36 11-43 (206)
287 2zts_A Putative uncharacterize 84.5 1.9 6.6E-05 40.2 7.2 40 2-44 39-78 (251)
288 3kb2_A SPBC2 prophage-derived 84.1 0.47 1.6E-05 41.5 2.4 18 1-18 9-26 (173)
289 2r8r_A Sensor protein; KDPD, P 84.0 1 3.5E-05 41.2 4.6 31 2-34 15-45 (228)
290 4a1f_A DNAB helicase, replicat 84.0 2.6 9E-05 41.4 8.0 42 2-47 55-96 (338)
291 2ehv_A Hypothetical protein PH 84.0 2.3 7.9E-05 39.7 7.5 29 2-32 39-68 (251)
292 2xxa_A Signal recognition part 83.2 3.9 0.00013 41.8 9.2 80 1-81 108-192 (433)
293 3trf_A Shikimate kinase, SK; a 83.0 0.55 1.9E-05 41.7 2.4 18 1-18 13-30 (185)
294 3kl4_A SRP54, signal recogniti 82.6 3.5 0.00012 42.0 8.4 79 2-82 106-189 (433)
295 3vaa_A Shikimate kinase, SK; s 82.5 0.59 2E-05 42.2 2.5 18 1-18 33-50 (199)
296 2qe7_A ATP synthase subunit al 82.4 1.8 6.1E-05 44.6 6.2 78 2-83 171-265 (502)
297 1via_A Shikimate kinase; struc 82.3 0.62 2.1E-05 41.0 2.5 18 1-18 12-29 (175)
298 4eun_A Thermoresistant glucoki 82.2 3 0.0001 37.4 7.2 17 1-17 37-53 (200)
299 2r9v_A ATP synthase subunit al 81.8 1.8 6.2E-05 44.6 5.9 78 2-83 184-278 (515)
300 1nks_A Adenylate kinase; therm 81.8 0.66 2.3E-05 41.4 2.5 19 1-19 9-27 (194)
301 3kjh_A CO dehydrogenase/acetyl 81.8 1 3.5E-05 42.2 4.0 33 2-36 9-41 (254)
302 1kht_A Adenylate kinase; phosp 81.6 0.68 2.3E-05 41.3 2.5 19 1-19 11-29 (192)
303 3cmu_A Protein RECA, recombina 81.5 2.6 9E-05 51.3 8.0 74 2-82 1436-1515(2050)
304 3dm5_A SRP54, signal recogniti 81.3 4.4 0.00015 41.3 8.6 19 2-20 109-127 (443)
305 1ly1_A Polynucleotide kinase; 81.3 0.65 2.2E-05 40.9 2.3 15 1-15 10-24 (181)
306 2rhm_A Putative kinase; P-loop 80.9 0.72 2.5E-05 41.2 2.4 18 1-18 13-30 (193)
307 2yvu_A Probable adenylyl-sulfa 80.7 1.3 4.3E-05 39.4 4.0 20 1-20 21-40 (186)
308 3iij_A Coilin-interacting nucl 80.7 0.75 2.6E-05 40.6 2.4 18 1-18 19-36 (180)
309 1zuh_A Shikimate kinase; alpha 80.6 0.78 2.7E-05 40.0 2.5 18 1-18 15-32 (168)
310 2plr_A DTMP kinase, probable t 80.5 1.7 5.7E-05 39.4 4.9 20 1-20 12-31 (213)
311 1kag_A SKI, shikimate kinase I 80.0 0.81 2.8E-05 40.0 2.4 18 1-18 12-29 (173)
312 3t61_A Gluconokinase; PSI-biol 79.7 0.83 2.9E-05 41.3 2.4 17 1-17 26-42 (202)
313 2ck3_A ATP synthase subunit al 79.6 2.9 0.0001 43.2 6.6 82 2-83 171-273 (510)
314 2jaq_A Deoxyguanosine kinase; 79.5 0.86 2.9E-05 41.1 2.5 18 1-18 8-25 (205)
315 2q6t_A DNAB replication FORK h 79.4 7.2 0.00025 40.1 9.8 43 2-47 209-251 (444)
316 1cp2_A CP2, nitrogenase iron p 79.3 1.6 5.6E-05 41.4 4.5 30 2-33 10-39 (269)
317 2ffh_A Protein (FFH); SRP54, s 79.2 6.1 0.00021 40.2 8.8 77 1-81 106-189 (425)
318 3k9g_A PF-32 protein; ssgcid, 79.1 1.6 5.4E-05 41.4 4.3 33 2-37 37-69 (267)
319 2ze6_A Isopentenyl transferase 78.9 0.91 3.1E-05 42.8 2.5 18 1-18 9-26 (253)
320 1e6c_A Shikimate kinase; phosp 78.9 0.94 3.2E-05 39.6 2.5 18 1-18 10-27 (173)
321 2pbr_A DTMP kinase, thymidylat 78.7 2.9 9.8E-05 37.1 5.8 19 1-19 8-26 (195)
322 2iyv_A Shikimate kinase, SK; t 78.6 0.95 3.2E-05 40.1 2.4 18 1-18 10-27 (184)
323 2pt5_A Shikimate kinase, SK; a 78.5 0.99 3.4E-05 39.2 2.5 18 1-18 8-25 (168)
324 3cm0_A Adenylate kinase; ATP-b 78.4 0.98 3.4E-05 40.0 2.5 18 1-18 12-29 (186)
325 3zq6_A Putative arsenical pump 78.2 2.2 7.6E-05 41.8 5.2 34 2-37 23-56 (324)
326 2afh_E Nitrogenase iron protei 77.8 1.9 6.6E-05 41.4 4.6 30 2-33 11-40 (289)
327 1zp6_A Hypothetical protein AT 77.8 0.91 3.1E-05 40.5 2.1 16 1-16 17-32 (191)
328 1fx0_A ATP synthase alpha chai 77.7 3 0.0001 43.1 6.0 77 2-82 172-265 (507)
329 2z0h_A DTMP kinase, thymidylat 77.7 3 0.0001 37.1 5.6 19 1-19 8-26 (197)
330 3uie_A Adenylyl-sulfate kinase 77.7 1 3.6E-05 40.6 2.4 18 1-18 33-50 (200)
331 3cmw_A Protein RECA, recombina 77.7 4.2 0.00014 48.8 8.1 76 2-84 741-822 (1706)
332 3iqw_A Tail-anchored protein t 77.7 2.1 7.2E-05 42.1 4.8 32 2-35 25-56 (334)
333 2r6a_A DNAB helicase, replicat 77.5 5.7 0.0002 41.0 8.3 41 2-45 212-252 (454)
334 1g3q_A MIND ATPase, cell divis 77.4 1.6 5.6E-05 40.4 3.8 30 2-33 12-41 (237)
335 1y63_A LMAJ004144AAA protein; 77.4 1.1 3.6E-05 39.9 2.4 16 1-16 18-33 (184)
336 3gmt_A Adenylate kinase; ssgci 77.3 6.6 0.00022 36.0 7.6 18 1-18 16-33 (230)
337 1tev_A UMP-CMP kinase; ploop, 77.0 1.1 3.9E-05 39.9 2.5 18 1-18 11-28 (196)
338 3oaa_A ATP synthase subunit al 77.0 7.2 0.00025 40.1 8.5 78 2-83 171-265 (513)
339 1nn5_A Similar to deoxythymidy 77.0 3 0.0001 37.8 5.4 20 1-20 17-36 (215)
340 2c95_A Adenylate kinase 1; tra 76.8 1.2 4E-05 39.9 2.5 18 1-18 17-34 (196)
341 2vli_A Antibiotic resistance p 76.8 0.78 2.7E-05 40.6 1.3 18 1-18 13-30 (183)
342 2xj4_A MIPZ; replication, cell 76.7 2.3 8E-05 40.8 4.8 36 2-39 14-50 (286)
343 2j37_W Signal recognition part 76.7 10 0.00036 39.4 9.9 28 2-31 110-137 (504)
344 3vkg_A Dynein heavy chain, cyt 76.7 15 0.00053 47.1 12.9 71 2-82 1313-1384(3245)
345 2cdn_A Adenylate kinase; phosp 76.5 1.2 4.1E-05 40.1 2.5 18 1-18 28-45 (201)
346 2bwj_A Adenylate kinase 5; pho 76.1 1.2 4.3E-05 39.8 2.5 18 1-18 20-37 (199)
347 2qor_A Guanylate kinase; phosp 76.1 1.2 4E-05 40.4 2.3 18 1-18 20-37 (204)
348 2ph1_A Nucleotide-binding prot 76.0 1.8 6.2E-05 40.9 3.7 31 2-34 28-58 (262)
349 1knq_A Gluconate kinase; ALFA/ 75.9 1.3 4.4E-05 38.8 2.4 17 1-17 16-32 (175)
350 3q9l_A Septum site-determining 75.8 1.3 4.5E-05 41.8 2.7 30 2-33 12-41 (260)
351 3ea0_A ATPase, para family; al 75.8 1.2 4.2E-05 41.5 2.5 31 2-33 14-44 (245)
352 1q57_A DNA primase/helicase; d 75.7 8.4 0.00029 40.3 9.2 43 2-47 251-293 (503)
353 1aky_A Adenylate kinase; ATP:A 75.7 1.3 4.4E-05 40.7 2.5 18 1-18 12-29 (220)
354 3fkq_A NTRC-like two-domain pr 75.7 2 7E-05 43.1 4.2 30 2-33 153-182 (373)
355 3a4m_A L-seryl-tRNA(SEC) kinas 75.5 1.2 4.3E-05 42.0 2.4 18 1-18 12-29 (260)
356 1yrb_A ATP(GTP)binding protein 75.4 1.3 4.6E-05 41.7 2.6 17 2-18 23-39 (262)
357 1byi_A Dethiobiotin synthase; 75.2 1.4 4.9E-05 40.4 2.7 19 2-20 11-29 (224)
358 3end_A Light-independent proto 75.1 2.5 8.6E-05 41.0 4.6 31 2-34 50-80 (307)
359 3bgw_A DNAB-like replicative h 75.0 7.8 0.00027 39.8 8.4 42 2-47 206-247 (444)
360 1zak_A Adenylate kinase; ATP:A 74.9 1.4 4.6E-05 40.5 2.4 18 1-18 13-30 (222)
361 3mfy_A V-type ATP synthase alp 74.6 4.2 0.00014 42.4 6.1 39 2-44 236-275 (588)
362 1zd8_A GTP:AMP phosphotransfer 74.6 1.3 4.5E-05 40.8 2.3 18 1-18 15-32 (227)
363 3ug7_A Arsenical pump-driving 74.6 2.7 9.2E-05 41.7 4.7 29 2-32 35-63 (349)
364 3cf2_A TER ATPase, transitiona 74.4 2.3 8E-05 47.0 4.5 121 2-142 520-662 (806)
365 2oze_A ORF delta'; para, walke 74.4 3 0.0001 40.2 4.9 32 2-35 46-77 (298)
366 3fb4_A Adenylate kinase; psych 74.2 1.5 5E-05 40.1 2.4 18 1-18 8-25 (216)
367 3be4_A Adenylate kinase; malar 74.0 1.5 5.1E-05 40.1 2.5 18 1-18 13-30 (217)
368 1wcv_1 SOJ, segregation protei 73.9 2 6.7E-05 40.5 3.3 31 2-34 16-46 (257)
369 2wwf_A Thymidilate kinase, put 73.8 1.5 5.2E-05 39.7 2.5 20 1-20 18-37 (212)
370 1qf9_A UMP/CMP kinase, protein 73.7 1.5 5.2E-05 38.9 2.4 18 1-18 14-31 (194)
371 1zu4_A FTSY; GTPase, signal re 73.7 8.8 0.0003 37.4 8.0 29 2-32 114-142 (320)
372 1ukz_A Uridylate kinase; trans 73.3 1.5 5.1E-05 39.5 2.3 17 1-17 23-39 (203)
373 3io3_A DEHA2D07832P; chaperone 73.3 3.1 0.00011 41.2 4.7 32 2-35 27-60 (348)
374 1hyq_A MIND, cell division inh 73.2 2.4 8.1E-05 40.1 3.8 30 2-33 12-41 (263)
375 1xjc_A MOBB protein homolog; s 73.2 1.8 6.2E-05 37.7 2.6 19 2-20 13-31 (169)
376 1e4v_A Adenylate kinase; trans 73.1 1.6 5.5E-05 39.8 2.4 17 1-17 8-24 (214)
377 3fwy_A Light-independent proto 72.9 3.2 0.00011 40.4 4.6 30 2-33 57-86 (314)
378 2bdt_A BH3686; alpha-beta prot 72.9 1.5 5.3E-05 38.9 2.2 15 1-15 10-24 (189)
379 3dl0_A Adenylate kinase; phosp 72.8 1.5 5.3E-05 39.9 2.3 17 1-17 8-24 (216)
380 1cr0_A DNA primase/helicase; R 72.8 5 0.00017 38.6 6.1 43 2-47 44-86 (296)
381 1gvn_B Zeta; postsegregational 72.5 1.4 4.7E-05 42.4 1.9 18 1-18 41-58 (287)
382 1ak2_A Adenylate kinase isoenz 72.5 1.7 5.8E-05 40.3 2.5 18 1-18 24-41 (233)
383 2xb4_A Adenylate kinase; ATP-b 72.2 1.8 6E-05 39.8 2.5 18 1-18 8-25 (223)
384 2woo_A ATPase GET3; tail-ancho 72.1 3.5 0.00012 40.5 4.7 30 2-33 28-57 (329)
385 4tmk_A Protein (thymidylate ki 72.0 5.5 0.00019 36.1 5.7 45 1-46 11-55 (213)
386 1m7g_A Adenylylsulfate kinase; 71.5 1.9 6.4E-05 39.2 2.5 18 1-18 33-50 (211)
387 3vr4_A V-type sodium ATPase ca 71.4 6.7 0.00023 41.1 6.7 39 2-44 241-280 (600)
388 2if2_A Dephospho-COA kinase; a 71.3 1.8 6.1E-05 39.0 2.3 15 1-15 9-23 (204)
389 1kgd_A CASK, peripheral plasma 71.2 1.9 6.3E-05 38.1 2.3 17 2-18 14-30 (180)
390 3e70_C DPA, signal recognition 71.1 22 0.00075 34.7 10.2 47 2-50 138-185 (328)
391 2v54_A DTMP kinase, thymidylat 71.0 1.7 6E-05 39.0 2.1 17 1-17 12-28 (204)
392 2pez_A Bifunctional 3'-phospho 71.0 2 6.8E-05 37.7 2.5 19 1-19 13-31 (179)
393 4ehx_A Tetraacyldisaccharide 4 70.9 7.3 0.00025 37.8 6.6 20 1-20 46-65 (315)
394 3cmu_A Protein RECA, recombina 70.9 7.7 0.00026 47.4 8.0 74 2-82 392-471 (2050)
395 2fz4_A DNA repair protein RAD2 70.7 9.6 0.00033 35.2 7.3 16 2-17 117-132 (237)
396 1ye8_A Protein THEP1, hypothet 70.6 2.1 7.2E-05 37.7 2.5 18 2-19 9-26 (178)
397 2orv_A Thymidine kinase; TP4A 70.4 2.2 7.6E-05 39.0 2.6 97 3-111 29-127 (234)
398 3jvv_A Twitching mobility prot 70.3 0.73 2.5E-05 45.9 -0.7 102 2-112 132-233 (356)
399 3tqc_A Pantothenate kinase; bi 70.2 7.7 0.00026 37.7 6.6 17 2-18 101-117 (321)
400 3lv8_A DTMP kinase, thymidylat 70.2 5.8 0.0002 36.6 5.5 28 1-29 35-62 (236)
401 4edh_A DTMP kinase, thymidylat 69.7 6.3 0.00022 35.7 5.6 20 1-20 14-33 (213)
402 2woj_A ATPase GET3; tail-ancho 69.7 4.7 0.00016 40.0 5.1 35 2-38 27-63 (354)
403 2bbw_A Adenylate kinase 4, AK4 69.6 2.1 7.3E-05 40.0 2.5 18 1-18 35-52 (246)
404 1cke_A CK, MSSA, protein (cyti 69.6 2.2 7.4E-05 39.2 2.5 18 1-18 13-30 (227)
405 2grj_A Dephospho-COA kinase; T 69.3 2.2 7.5E-05 38.1 2.4 17 1-17 20-36 (192)
406 3nwj_A ATSK2; P loop, shikimat 69.1 2.2 7.6E-05 39.9 2.4 18 1-18 56-73 (250)
407 4hlc_A DTMP kinase, thymidylat 69.0 5.6 0.00019 35.8 5.1 18 2-19 11-28 (205)
408 3pg5_A Uncharacterized protein 68.8 3.3 0.00011 41.3 3.8 33 2-36 11-43 (361)
409 3tlx_A Adenylate kinase 2; str 68.8 2.3 7.9E-05 39.7 2.5 18 1-18 37-54 (243)
410 3c8u_A Fructokinase; YP_612366 68.4 1.9 6.7E-05 39.0 1.9 18 2-19 31-48 (208)
411 2j41_A Guanylate kinase; GMP, 68.2 2.2 7.6E-05 38.4 2.2 17 1-17 14-30 (207)
412 3ez2_A Plasmid partition prote 67.8 5 0.00017 40.6 5.0 33 2-34 118-154 (398)
413 1jjv_A Dephospho-COA kinase; P 67.7 2.2 7.4E-05 38.6 2.0 15 1-15 10-24 (206)
414 2yhs_A FTSY, cell division pro 67.5 19 0.00066 37.2 9.1 32 2-36 302-333 (503)
415 1uf9_A TT1252 protein; P-loop, 67.2 2.4 8.2E-05 38.0 2.2 16 1-16 16-31 (203)
416 1gtv_A TMK, thymidylate kinase 67.0 1.8 6.3E-05 39.2 1.4 18 2-19 9-26 (214)
417 2p5t_B PEZT; postsegregational 66.9 1.7 5.9E-05 40.9 1.2 18 1-18 40-57 (253)
418 3ld9_A DTMP kinase, thymidylat 66.8 6.3 0.00021 36.0 4.9 19 1-19 29-47 (223)
419 3igf_A ALL4481 protein; two-do 66.5 3 0.0001 41.6 2.9 33 2-37 11-43 (374)
420 3tau_A Guanylate kinase, GMP k 66.4 2.5 8.5E-05 38.3 2.2 18 2-19 17-34 (208)
421 3tr0_A Guanylate kinase, GMP k 66.4 2.5 8.4E-05 38.1 2.1 16 2-17 16-31 (205)
422 3cmw_A Protein RECA, recombina 66.4 11 0.00037 45.5 7.9 74 2-82 1440-1519(1706)
423 1htw_A HI0065; nucleotide-bind 66.3 2.5 8.5E-05 36.3 2.0 16 2-17 42-57 (158)
424 3a00_A Guanylate kinase, GMP k 66.2 2.6 9.1E-05 37.3 2.3 18 2-19 10-27 (186)
425 1ex7_A Guanylate kinase; subst 66.1 2.3 7.8E-05 37.7 1.8 19 2-20 10-28 (186)
426 3aez_A Pantothenate kinase; tr 66.1 8.6 0.0003 37.3 6.1 18 2-19 99-116 (312)
427 3asz_A Uridine kinase; cytidin 65.8 2.9 9.8E-05 37.9 2.5 17 2-18 15-31 (211)
428 1uj2_A Uridine-cytidine kinase 65.4 2.8 9.6E-05 39.3 2.4 18 1-18 30-47 (252)
429 3zvl_A Bifunctional polynucleo 65.3 3.5 0.00012 42.1 3.2 17 1-17 266-282 (416)
430 3ake_A Cytidylate kinase; CMP 65.2 3 0.0001 37.6 2.4 18 1-18 10-27 (208)
431 1ltq_A Polynucleotide kinase; 65.1 2.8 9.6E-05 40.5 2.4 16 1-16 10-25 (301)
432 2qt1_A Nicotinamide riboside k 65.1 2.6 8.9E-05 38.1 2.0 16 2-17 30-45 (207)
433 4e22_A Cytidylate kinase; P-lo 65.0 2.9 0.0001 39.2 2.4 18 1-18 35-52 (252)
434 3r20_A Cytidylate kinase; stru 64.8 3.1 0.00011 38.3 2.5 18 1-18 17-34 (233)
435 4eaq_A DTMP kinase, thymidylat 64.8 4.8 0.00017 37.0 3.8 19 1-19 34-52 (229)
436 1rz3_A Hypothetical protein rb 64.0 3.2 0.00011 37.3 2.4 18 2-19 31-48 (201)
437 2f1r_A Molybdopterin-guanine d 63.9 2.8 9.5E-05 36.6 1.9 29 2-30 11-39 (171)
438 1vht_A Dephospho-COA kinase; s 63.5 3.1 0.00011 37.9 2.3 15 1-15 12-26 (218)
439 1tue_A Replication protein E1; 63.4 2.7 9.1E-05 37.8 1.6 18 2-19 67-84 (212)
440 4gp7_A Metallophosphoesterase; 63.4 2.3 8E-05 37.1 1.3 13 2-14 18-30 (171)
441 1g8f_A Sulfate adenylyltransfe 62.7 3.3 0.00011 43.2 2.5 19 1-19 403-421 (511)
442 2i3b_A HCR-ntpase, human cance 62.3 3.7 0.00013 36.5 2.4 17 2-18 10-26 (189)
443 1np6_A Molybdopterin-guanine d 62.3 6.2 0.00021 34.4 3.8 19 2-20 15-33 (174)
444 1odf_A YGR205W, hypothetical 3 62.2 3.5 0.00012 39.6 2.4 70 2-71 40-117 (290)
445 3gqb_A V-type ATP synthase alp 62.1 6.8 0.00023 40.8 4.6 39 2-44 230-269 (578)
446 3sr0_A Adenylate kinase; phosp 62.0 3.6 0.00012 37.1 2.3 17 2-18 9-25 (206)
447 3crm_A TRNA delta(2)-isopenten 61.8 3.5 0.00012 40.1 2.3 18 1-18 13-30 (323)
448 2hf9_A Probable hydrogenase ni 61.7 3.5 0.00012 37.7 2.3 19 2-20 47-65 (226)
449 3ney_A 55 kDa erythrocyte memb 61.6 3.6 0.00012 36.8 2.2 17 2-18 28-44 (197)
450 3bfv_A CAPA1, CAPB2, membrane 61.5 5.8 0.0002 37.6 3.8 29 2-32 92-120 (271)
451 2ga8_A Hypothetical 39.9 kDa p 61.5 3.9 0.00013 40.3 2.5 20 1-20 32-51 (359)
452 2ocp_A DGK, deoxyguanosine kin 61.3 3.6 0.00012 38.2 2.3 18 1-18 10-27 (241)
453 2r44_A Uncharacterized protein 61.3 5.9 0.0002 38.8 4.0 22 121-142 178-199 (331)
454 2jeo_A Uridine-cytidine kinase 60.7 3.6 0.00012 38.4 2.1 16 2-17 34-49 (245)
455 1lvg_A Guanylate kinase, GMP k 60.3 4.1 0.00014 36.5 2.4 17 2-18 13-29 (198)
456 3hws_A ATP-dependent CLP prote 60.1 3.7 0.00013 40.9 2.3 17 2-18 60-76 (363)
457 1znw_A Guanylate kinase, GMP k 60.1 3.8 0.00013 37.0 2.1 17 2-18 29-45 (207)
458 1ihu_A Arsenical pump-driving 60.0 7.1 0.00024 41.9 4.6 29 2-32 17-45 (589)
459 2ce2_X GTPase HRAS; signaling 59.2 3.8 0.00013 34.8 1.9 16 2-17 12-27 (166)
460 1rj9_A FTSY, signal recognitio 59.1 4.4 0.00015 39.2 2.5 19 2-20 111-129 (304)
461 3d3q_A TRNA delta(2)-isopenten 58.9 4.4 0.00015 39.7 2.4 17 2-18 16-32 (340)
462 3cio_A ETK, tyrosine-protein k 58.8 6.8 0.00023 37.8 3.8 30 2-33 114-143 (299)
463 1p6x_A Thymidine kinase; P-loo 58.7 3.9 0.00013 40.0 2.0 18 3-20 17-34 (334)
464 3umf_A Adenylate kinase; rossm 58.3 4.8 0.00016 36.7 2.5 18 1-18 37-54 (217)
465 2eyu_A Twitching motility prot 58.3 6.9 0.00024 36.8 3.6 99 2-112 34-135 (261)
466 1z6g_A Guanylate kinase; struc 58.2 4.3 0.00015 37.1 2.1 16 2-17 32-47 (218)
467 2f6r_A COA synthase, bifunctio 58.2 4.2 0.00014 38.9 2.1 15 1-15 83-97 (281)
468 3b9q_A Chloroplast SRP recepto 57.5 4.8 0.00017 38.9 2.5 19 2-20 109-127 (302)
469 1tf7_A KAIC; homohexamer, hexa 57.4 12 0.00042 39.3 5.8 29 2-32 290-318 (525)
470 3la6_A Tyrosine-protein kinase 57.3 7.6 0.00026 37.1 3.8 30 2-33 102-131 (286)
471 2wsm_A Hydrogenase expression/ 57.3 4.6 0.00016 36.7 2.3 18 2-19 39-56 (221)
472 3a8t_A Adenylate isopentenyltr 57.2 4.1 0.00014 39.8 1.9 18 1-18 48-65 (339)
473 2dyk_A GTP-binding protein; GT 57.0 4.4 0.00015 34.4 1.9 16 2-17 10-25 (161)
474 1s96_A Guanylate kinase, GMP k 56.6 4.6 0.00016 36.9 2.1 17 2-18 25-41 (219)
475 3nbx_X ATPase RAVA; AAA+ ATPas 56.6 3.4 0.00012 43.1 1.3 18 2-19 50-67 (500)
476 1oix_A RAS-related protein RAB 56.3 4.8 0.00017 35.6 2.1 17 2-18 38-54 (191)
477 3con_A GTPase NRAS; structural 55.6 4.7 0.00016 35.5 1.9 16 2-17 30-45 (190)
478 2orw_A Thymidine kinase; TMTK, 55.5 6.2 0.00021 34.8 2.7 102 2-111 12-114 (184)
479 3upu_A ATP-dependent DNA helic 55.4 8.9 0.0003 39.6 4.3 19 2-20 54-72 (459)
480 3ez9_A Para; DNA binding, wing 55.2 3.1 0.0001 42.3 0.7 32 2-33 121-156 (403)
481 2axn_A 6-phosphofructo-2-kinas 54.4 8.7 0.0003 40.3 4.0 20 1-20 43-62 (520)
482 2qmh_A HPR kinase/phosphorylas 54.3 4.3 0.00015 36.2 1.4 17 2-18 43-59 (205)
483 3fdi_A Uncharacterized protein 54.3 6.1 0.00021 35.5 2.4 20 1-20 14-33 (201)
484 2f9l_A RAB11B, member RAS onco 53.8 5.6 0.00019 35.4 2.1 16 2-17 14-29 (199)
485 1e2k_A Thymidine kinase; trans 53.7 4 0.00014 39.9 1.1 19 2-20 13-31 (331)
486 3tqf_A HPR(Ser) kinase; transf 53.5 6 0.00021 34.4 2.1 15 2-16 25-39 (181)
487 1q3t_A Cytidylate kinase; nucl 53.3 6.2 0.00021 36.4 2.4 18 1-18 24-41 (236)
488 3v9p_A DTMP kinase, thymidylat 53.3 4.6 0.00016 37.1 1.5 20 1-20 33-52 (227)
489 1bif_A 6-phosphofructo-2-kinas 53.2 8.5 0.00029 39.9 3.7 20 1-20 47-66 (469)
490 1nlf_A Regulatory protein REPA 52.9 6.2 0.00021 37.6 2.4 17 2-18 39-55 (279)
491 1z2a_A RAS-related protein RAB 52.7 6.1 0.00021 33.7 2.1 16 2-17 14-29 (168)
492 2wji_A Ferrous iron transport 52.7 5.3 0.00018 34.3 1.7 15 2-16 12-26 (165)
493 3exa_A TRNA delta(2)-isopenten 52.7 5.9 0.0002 38.2 2.1 17 2-18 12-28 (322)
494 1g41_A Heat shock protein HSLU 52.5 5.9 0.0002 40.5 2.2 19 1-19 58-76 (444)
495 3foz_A TRNA delta(2)-isopenten 52.5 6 0.00021 38.1 2.2 17 2-18 19-35 (316)
496 3tmk_A Thymidylate kinase; pho 52.5 6.7 0.00023 35.6 2.4 19 1-19 13-31 (216)
497 2zej_A Dardarin, leucine-rich 52.4 4.5 0.00015 35.5 1.2 15 2-16 11-25 (184)
498 2og2_A Putative signal recogni 52.1 6.6 0.00023 38.9 2.5 19 2-20 166-184 (359)
499 1x6v_B Bifunctional 3'-phospho 51.7 6.4 0.00022 42.2 2.4 19 1-19 60-78 (630)
500 2h92_A Cytidylate kinase; ross 51.6 6.9 0.00024 35.5 2.4 18 1-18 11-28 (219)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.8e-35 Score=317.06 Aligned_cols=261 Identities=15% Similarity=0.121 Sum_probs=190.9
Q ss_pred CCCCcHHHHHHHHHH--hhhhcccCceEEEEEecCCc--CHHHHHHHHHHHhCCCCc-------ccchHH-HHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGR--QAKENNLFEKVISSRVSQTP--QIKEIQREIAEKLGLKID-------EESETV-RAWRLLEQL 68 (674)
Q Consensus 1 mgGiGKTtla~~~~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~-------~~~~~~-~~~~~~~~l 68 (674)
|||+||||||+++|+ +...+.+|++++||++++.. +..+++++|+++++.... ...+.. ....+.+.+
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L 239 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL 239 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH
Confidence 899999999999998 56667789999999999875 899999999999986522 111222 334455555
Q ss_pred HcCCcEEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 69 KKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 69 ~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
.++|||||||||||+..++ .+. ...||+||||||++.++.........|++++|+.++|++||.++++....++
T Consensus 240 ~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 313 (549)
T 2a5y_B 240 IDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGE 313 (549)
T ss_dssp TTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--C
T ss_pred cCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCch
Confidence 5434999999999998764 111 1269999999999999763222446799999999999999999998654457
Q ss_pred chhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhccccccCCCcccccceeeeeeecccCCChHHHHHHHH-
Q 048755 149 ELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQLEGEELRRTFL- 227 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~l~~~f~- 227 (674)
...+++++|+++|+|+|||++.+|+.++.++. +|.+.+.. ..... ....+..++.+||+.|+.+ ++.||.
T Consensus 314 ~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~---~l~~~----~~~~i~~~l~~Sy~~L~~~-lk~~f~~ 384 (549)
T 2a5y_B 314 KEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNN---KLESR----GLVGVECITPYSYKSLAMA-LQRCVEV 384 (549)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHH---HHHHH----CSSTTCCCSSSSSSSHHHH-HHHHHHT
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHH---Hhhcc----cHHHHHHHHhcccccccHH-HHHHHhc
Confidence 78889999999999999999999999987743 33222222 11110 1256789999999999988 899999
Q ss_pred ----------Hhcccc-ccchhhhhhhhccc--ccccccccHHHHHHHHHHHHHHHHhhcccccC
Q 048755 228 ----------LIGYAF-ISCVKDVICYGMGL--GLFQNINTLEEARDRAHTLVDKLKNSCLLLDG 279 (674)
Q Consensus 228 ----------~~a~fp-~~~~~~li~~w~~~--g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 279 (674)
|||+|| +.... +..|+|+ ||+.........++... ++++|+++++++..
T Consensus 385 Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~ 446 (549)
T 2a5y_B 385 LSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSG 446 (549)
T ss_dssp SCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEE
T ss_pred cchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEe
Confidence 999999 44444 8999999 99975331111233334 78888889998753
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=1.3e-29 Score=277.58 Aligned_cols=235 Identities=17% Similarity=0.145 Sum_probs=177.4
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCce-EEEEEecCCcCHHHHHHHHHHHhCC---CC--c-c----c-chHHH-HHHHHHH
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEK-VISSRVSQTPQIKEIQREIAEKLGL---KI--D-E----E-SETVR-AWRLLEQ 67 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~l~~---~~--~-~----~-~~~~~-~~~~~~~ 67 (674)
|||+||||||+++|++.+.+.+|+. ++|+++++.++...++..|++.++. .. . . . ..... ...+.+.
T Consensus 158 mGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~l 237 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237 (1221)
T ss_dssp STTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHH
Confidence 7999999999999998777777975 9999999999988888888775421 10 0 0 0 01111 2233333
Q ss_pred H--HcCCcEEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecC------CCCHHHHHHHHHH
Q 048755 68 L--KKETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVD------VLNEKEAWSLFKK 139 (674)
Q Consensus 68 l--~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~------~L~~~~~~~lf~~ 139 (674)
+ ..+||+||||||||+.++|+.+. .||+||||||++.++.. ......|.++ +|+.+||++||.+
T Consensus 238 L~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~ 309 (1221)
T 1vt4_I 238 LKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLK 309 (1221)
T ss_dssp HHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHH
Confidence 3 24689999999999998888652 58999999999998742 2333457777 9999999999999
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHhcC--ChHHHHHHHHHhccccccCCCcccccceeeeeeecccCC
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALKNK--SLYEWRNALRQLKRPFLRSFSGTQAVAAYSTIELSYYQL 217 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~--~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~~l~~s~~~L 217 (674)
..+.. ..+...++ |+|+||||+++|+.|+.+ +..+|+.. ....+..++..||+.|
T Consensus 310 ~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---------------~~~~I~aaLelSYd~L 366 (1221)
T 1vt4_I 310 YLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---------------NCDKLTTIIESSLNVL 366 (1221)
T ss_dssp HHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---------------SCHHHHHHHHHHHHHS
T ss_pred HcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---------------ChhHHHHHHHHHHHhC
Confidence 86532 22333443 999999999999999977 77888642 1256788999999999
Q ss_pred ChHHH-HHHHHHhcccc---ccchhhhhhhhcccccccccccHHHHHHHHHHHHHHHHhhccccc
Q 048755 218 EGEEL-RRTFLLIGYAF---ISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLLD 278 (674)
Q Consensus 218 ~~~~l-~~~f~~~a~fp---~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 278 (674)
+++ . |.||+++|+|| .++.+.++.+|+++|- + ...+++++|.++++++.
T Consensus 367 p~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e----dAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 367 EPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S----DVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp CTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H----HHHHHHHHHHTSSSSSB
T ss_pred CHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H----HHHHHHHHHHhhCCEEE
Confidence 998 6 99999999999 5777889999999871 1 24566777777888765
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=1.8e-27 Score=286.63 Aligned_cols=236 Identities=20% Similarity=0.274 Sum_probs=182.6
Q ss_pred CCCCcHHHHHHHHHHhhhh-cccC-ceEEEEEecCCc--CHHHHHHHHHHHhCCCCc----ccchHHHHHHHHHHHHcCC
Q 048755 1 MGGIGKTTLVKEVGRQAKE-NNLF-EKVISSRVSQTP--QIKEIQREIAEKLGLKID----EESETVRAWRLLEQLKKET 72 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~-~~~F-~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~k 72 (674)
|||+||||||+++|++.+. ..+| +.++||++++.. +....++.++..+..... ...........+...+.++
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 7999999999999998654 3335 789999998844 455557778888765432 1222333334444444444
Q ss_pred --cEEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCC-CCHHHHHHHHHHHhCCCCCCCc
Q 048755 73 --KILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDV-LNEKEAWSLFKKMTGDCIENGE 149 (674)
Q Consensus 73 --r~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~ 149 (674)
|+||||||||+..+|..+ ..|++||||||++.++....+....+.+++ |+.++|+++|...++.. .+.
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~ 305 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KED 305 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STT
T ss_pred CCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhh
Confidence 999999999999887754 568999999999998754456778899996 99999999999988632 344
Q ss_pred hhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhccccccCCCc---ccccceeeeeeecccCCChHHHHHHH
Q 048755 150 LKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSG---TQAVAAYSTIELSYYQLEGEELRRTF 226 (674)
Q Consensus 150 ~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~---~~~~~~~~~l~~s~~~L~~~~l~~~f 226 (674)
..+.+++|+++|+|+||||+.+|++|+.++ ..|++.++.+.......... .....+..++.+||+.|+++ .|.||
T Consensus 306 ~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~ 383 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYY 383 (1249)
T ss_dssp CCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHH
T ss_pred CcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHH
Confidence 557799999999999999999999999876 46999988887655433221 11246888999999999998 69999
Q ss_pred HHhcccc---ccchhhhhhhhccc
Q 048755 227 LLIGYAF---ISCVKDVICYGMGL 247 (674)
Q Consensus 227 ~~~a~fp---~~~~~~li~~w~~~ 247 (674)
+|+|+|| .++.+.+++.|.++
T Consensus 384 ~~l~~f~~~~~i~~~~~~~~~~~~ 407 (1249)
T 3sfz_A 384 TDLSILQKDVKVPTKVLCVLWDLE 407 (1249)
T ss_dssp HHGGGSCTTCCEEHHHHHHHHTCC
T ss_pred HHhCccCCCCeeCHHHHHHHhCCC
Confidence 9999999 57888999999765
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=6e-26 Score=233.35 Aligned_cols=304 Identities=17% Similarity=0.247 Sum_probs=221.6
Q ss_pred cccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEc
Q 048755 305 DTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSL 384 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l 384 (674)
..+++++.|.+.++.+..++....+++|++|++++|.+..+++ +.++++|++|++++|.+..+| .+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 3467778888888888777765678888888888887777666 678888888888888877765 4778888888888
Q ss_pred CCcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccc
Q 048755 385 DFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKV 464 (674)
Q Consensus 385 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 464 (674)
++|.+...+.+..+++|++|++++|.....+..+..+++|++|++++|. +...+. ++.+++|++|++++|.+.
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc----
Confidence 8888777555778888888888888544333447788888888888874 444443 677888888888877651
Q ss_pred cccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceec
Q 048755 465 GGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICL 544 (674)
Q Consensus 465 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 544 (674)
....+..+++|+.|++.++....++. +..+++|+.|+++++... ..
T Consensus 191 ----------~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~-----------------------~~ 236 (347)
T 4fmz_A 191 ----------DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKIT-----------------------DL 236 (347)
T ss_dssp ----------CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-----------------------CC
T ss_pred ----------ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccC-----------------------CC
Confidence 11226677788888888877666654 677778888877655321 11
Q ss_pred chhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCccccc
Q 048755 545 NEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLE 624 (674)
Q Consensus 545 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 624 (674)
+. ...+++|+.|++.+|. +..+. ....+++|+.|++++| .++.++ ....+++|+.|++++|. +.
T Consensus 237 ~~--~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~l~~n-~l~~~~--------~~~~l~~L~~L~L~~n~-l~ 300 (347)
T 4fmz_A 237 SP--LANLSQLTWLEIGTNQ-ISDIN---AVKDLTKLKMLNVGSN-QISDIS--------VLNNLSQLNSLFLNNNQ-LG 300 (347)
T ss_dssp GG--GTTCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSS-CCCCCG--------GGGGCTTCSEEECCSSC-CC
T ss_pred cc--hhcCCCCCEEECCCCc-cCCCh---hHhcCCCcCEEEccCC-ccCCCh--------hhcCCCCCCEEECcCCc-CC
Confidence 22 4457999999999985 33332 2367999999999998 555542 35678999999999985 44
Q ss_pred ccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 625 EICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 625 ~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
... +..++.+++|++|++++|+ +.++++ ...+++|+.|++++++
T Consensus 301 ~~~--~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 301 NED--MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGG--HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CcC--hhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 331 3345778999999999987 777766 5559999999999875
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=4.2e-26 Score=256.94 Aligned_cols=329 Identities=15% Similarity=0.158 Sum_probs=158.4
Q ss_pred ccCCCCCc-CCCCCcEEEcccCCCcc------------------cCchh-hcCCCcceEEEecCcccC-CCCcccccccC
Q 048755 320 ISELPQGF-ECPQLKYFHIRNDPSLR------------------ISDNI-FTGMTELRVLDFTEMHLL-ALPSSLGLLQN 378 (674)
Q Consensus 320 ~~~~~~~~-~~~~L~~L~l~~~~~~~------------------~~~~~-~~~~~~Lr~L~l~~~~~~-~lp~~~~~l~~ 378 (674)
+..+|..+ .+++|+.|++++|.+.. +|... |.++++|++|+|++|.+. .+|..++.+++
T Consensus 437 L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred ccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 33355444 55566666666655554 44332 225566666666665543 44555566666
Q ss_pred CcEEEcCCcC-CCC---cccccCcC-------CccEEecCCCCchhchH--hhcCCCCCcEEeCCCCCCCCCCChhhhhC
Q 048755 379 LQTLSLDFCI-LGD---IAIIGDLK-------KLEILTLRGSDMEKLVE--EMGELTQLRLLDLSYCFNLQVIPPNVISS 445 (674)
Q Consensus 379 L~~L~l~~~~-~~~---~~~~~~l~-------~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 445 (674)
|++|++++|. ++. |..++.+. +|++|++++|.+..+|. .++++++|++|++++|.. ..+| . ++.
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l-~~lp-~-~~~ 593 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLE-A-FGT 593 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCC-CBCC-C-CCT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCc-ccch-h-hcC
Confidence 6666666554 432 23333332 56666666665555555 555666666666665532 2555 2 555
Q ss_pred CCCCCeEEeccCCCccccccccCCcccccchhhhcCCCC-ccEEEeeeccCCCCCcccccccC--ccEEEEEEccccccc
Q 048755 446 LSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSK-LTSLEILIQDEKTLPRDLSFFKM--LQRYRISIGYDWWSV 522 (674)
Q Consensus 446 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~ 522 (674)
+++|+.|++++|.+. ..+..+..+++ |+.|++++|....+|..+..++. |+.|+++.+......
T Consensus 594 L~~L~~L~Ls~N~l~-------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp TSEESEEECCSSCCS-------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred CCcceEEECcCCccc-------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 566666666555541 22334445555 66666665555555555444332 555555554433322
Q ss_pred CCCC------cccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCC------CCccccceeeecccc
Q 048755 523 GPWD------GISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGR------EVFPKLNRLQIEHNG 590 (674)
Q Consensus 523 ~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~ 590 (674)
|.+. ...++..|++.++.....+..+...+++|+.|+|++|... .++..... +++++|+.|++++|
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N- 738 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN- 738 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS-
T ss_pred ccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC-
Confidence 3222 1124555555544444444444444555555555554322 22221110 11225555555544
Q ss_pred CceeeeecCC------------------CCCCCCCCCCccccccccCcc------cccccccCCCCccccCCccEEEEec
Q 048755 591 NLVRLVDTMD------------------CTPAPTIAFPLLESLFLRDLR------NLEEICCGPLTAESFSKLKTIRVEG 646 (674)
Q Consensus 591 ~l~~l~~~~~------------------~~~~~~~~~~~L~~L~l~~c~------~L~~~~~~~~~~~~l~~L~~L~i~~ 646 (674)
.++.++.... ..+.....+++|+.|++++++ -...+ |..+..+++|++|++++
T Consensus 739 ~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i---p~~l~~L~~L~~L~Ls~ 815 (876)
T 4ecn_A 739 KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW---PTGITTCPSLIQLQIGS 815 (876)
T ss_dssp CCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCC---CTTGGGCSSCCEEECCS
T ss_pred CCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccC---hHHHhcCCCCCEEECCC
Confidence 3332221100 001023345555555554422 11222 44455566666666666
Q ss_pred CCCccccCCchhhhhcccceeccccc
Q 048755 647 CDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 647 C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
|. +..+|... .++|+.|+|++++
T Consensus 816 N~-L~~Ip~~l--~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 816 ND-IRKVDEKL--TPQLYILDIADNP 838 (876)
T ss_dssp SC-CCBCCSCC--CSSSCEEECCSCT
T ss_pred CC-CCccCHhh--cCCCCEEECCCCC
Confidence 54 36665543 2566666666654
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.94 E-value=2.5e-25 Score=246.81 Aligned_cols=361 Identities=17% Similarity=0.167 Sum_probs=226.2
Q ss_pred ccccceeEeeccccccCCCC-Cc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEE
Q 048755 306 TLKVCTAISLFNTNISELPQ-GF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTL 382 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L 382 (674)
.+..+++|+++++.+..+++ .+ .+++|++|++++|.+..+.+..|.++++|++|++++|.+..+ |..++.+++|++|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 34678899999998887743 33 889999999999988888888889999999999999988865 6788899999999
Q ss_pred EcCCcCCCC--cccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCC--eEEeccC
Q 048755 383 SLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLE--ELYIGQS 457 (674)
Q Consensus 383 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l~~~ 457 (674)
++++|.+.. +..++.+++|++|++++|.+..++ +.+..+++|++|++++| .+..+++..++.+++|+ +|++.+|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC-cccccChhhhhhhcccceeEEecCCC
Confidence 999998877 467888999999999999888663 33445889999999888 45566555588888888 7888877
Q ss_pred CCccccccccCC---------------------------------------------------------------ccccc
Q 048755 458 PIMWGKVGGVDG---------------------------------------------------------------ERRNA 474 (674)
Q Consensus 458 ~~~~~~~~~~~~---------------------------------------------------------------~~~~~ 474 (674)
.+.......... .....
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 654322211000 00001
Q ss_pred chhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccC-CCCcccceeEEeecCCCce-ecchhHHhhh
Q 048755 475 SLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVG-PWDGISRKFKLKLTNGANI-CLNEGHIMQL 552 (674)
Q Consensus 475 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l 552 (674)
....++.+++|+.|+++++....+|..+..+++|+.|+++.+......| .+...+++..|.+.++... ..+......+
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred CHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 1223566788888888888888888888888888888887665432222 2234446666666654332 2333334456
Q ss_pred ccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCC-------------------CCCCCCCCCccc
Q 048755 553 KGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDC-------------------TPAPTIAFPLLE 613 (674)
Q Consensus 553 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~-------------------~~~~~~~~~~L~ 613 (674)
++|+.|++.+|..............+++|++|++++| .++.+...... .+.....+++|+
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 6677777766653332211112345666666666665 23332111000 000123345555
Q ss_pred cccccCcccccccccCCCCccccCCccEEEEecCCCccc-cC--Cchhhhhcccceecccc
Q 048755 614 SLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKN-VF--PLVIELTQLRTLELKNV 671 (674)
Q Consensus 614 ~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~--~~~~~l~~L~~L~l~~c 671 (674)
.|++++|. +.... +..++.+++|++|++++|+--.. ++ .....+++|+.|++++|
T Consensus 429 ~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 429 VLNLSHSL-LDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp EEECTTCC-CBTTC--TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred EEECCCCc-cCCcC--HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 55555542 22211 23345566666666666542221 11 12333667777777665
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=1.5e-25 Score=248.56 Aligned_cols=351 Identities=19% Similarity=0.167 Sum_probs=223.9
Q ss_pred cccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcE
Q 048755 305 DTLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQT 381 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~ 381 (674)
...+.+++|+++++.+..++.. + .+++|++|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++
T Consensus 29 ~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 29 DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 3457899999999998877663 3 889999999999999988888889999999999999999877 788999999999
Q ss_pred EEcCCcCCCC--cccccCcCCccEEecCCCCch--hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCC----eEE
Q 048755 382 LSLDFCILGD--IAIIGDLKKLEILTLRGSDME--KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLE----ELY 453 (674)
Q Consensus 382 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~ 453 (674)
|++++|.+.. +..++.+++|++|++++|.+. .+|..++++++|++|++++|. +..+++..++.+++|+ +|+
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceee
Confidence 9999998876 367889999999999999887 478889999999999999984 3444333244333332 455
Q ss_pred eccCCCcccccccc------------------------------------------------------------------
Q 048755 454 IGQSPIMWGKVGGV------------------------------------------------------------------ 467 (674)
Q Consensus 454 l~~~~~~~~~~~~~------------------------------------------------------------------ 467 (674)
+.+|.+........
T Consensus 188 l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 267 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEE
T ss_pred ccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhee
Confidence 54444321111000
Q ss_pred --CCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCC------
Q 048755 468 --DGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNG------ 539 (674)
Q Consensus 468 --~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~------ 539 (674)
...........+..+++|+.|++.++....+| .+..+++|++|+++.|.. ..+|.+ ..+++..|++.++
T Consensus 268 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp ECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC
T ss_pred ccccccccccccccccCCCCCEEEecCccchhhh-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch
Confidence 00000011112445566666666666666665 566666666666665554 455544 4444444444433
Q ss_pred ----------------Cceecc--hhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCC
Q 048755 540 ----------------ANICLN--EGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDC 601 (674)
Q Consensus 540 ----------------~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 601 (674)
...... +.....+++|+.|++.+|. +..++. ....+++|+.|++++| .++....
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~---- 416 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA--NFMGLEELQHLDFQHS-TLKRVTE---- 416 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC--CCTTCTTCCEEECTTS-EEESTTT----
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchh--hccCCCCCCeeECCCC-ccCCccC----
Confidence 222221 2223335556666665554 222321 1245666666666665 1221110
Q ss_pred CCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccc--cCCchhhhhcccceeccccc
Q 048755 602 TPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKN--VFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 602 ~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~--l~~~~~~l~~L~~L~l~~c~ 672 (674)
. .....+++|+.|++++|.-.... +..++.+++|++|++++|. +.. +|.....+++|+.|++++|.
T Consensus 417 ~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~ 484 (606)
T 3vq2_A 417 F-SAFLSLEKLLYLDISYTNTKIDF---DGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ 484 (606)
T ss_dssp T-TTTTTCTTCCEEECTTSCCEECC---TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC
T ss_pred h-hhhhccccCCEEECcCCCCCccc---hhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc
Confidence 0 03345677888888777533333 4456778888888888875 443 44445558889988888874
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=5e-26 Score=252.28 Aligned_cols=255 Identities=14% Similarity=0.170 Sum_probs=150.3
Q ss_pred CCCCc-CCCCCcEEEcccCCCcc------------------cCchhhc--CCCcceEEEecCcccC-CCCcccccccCCc
Q 048755 323 LPQGF-ECPQLKYFHIRNDPSLR------------------ISDNIFT--GMTELRVLDFTEMHLL-ALPSSLGLLQNLQ 380 (674)
Q Consensus 323 ~~~~~-~~~~L~~L~l~~~~~~~------------------~~~~~~~--~~~~Lr~L~l~~~~~~-~lp~~~~~l~~L~ 380 (674)
+|..+ .+++|++|++++|.+.. +|.. +. ++++|++|++++|.+. .+|..++.+++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 44444 55666666666666555 3333 34 5666666666666544 4566666666666
Q ss_pred EEEcCCcC-CCC---cccccCc------CCccEEecCCCCchhchH--hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCC
Q 048755 381 TLSLDFCI-LGD---IAIIGDL------KKLEILTLRGSDMEKLVE--EMGELTQLRLLDLSYCFNLQVIPPNVISSLSR 448 (674)
Q Consensus 381 ~L~l~~~~-~~~---~~~~~~l------~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 448 (674)
+|++++|. ++. |..++.+ ++|++|++++|.++.+|. .++++++|++|++++|...+.+| . ++.+++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~ 354 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIK 354 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCC
Confidence 66666665 442 3444444 666666666666666665 56666666666666664333555 2 566666
Q ss_pred CCeEEeccCCCccccccccCCcccccchhhhcCCCC-ccEEEeeeccCCCCCccccccc--CccEEEEEEcccccccCCC
Q 048755 449 LEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSK-LTSLEILIQDEKTLPRDLSFFK--MLQRYRISIGYDWWSVGPW 525 (674)
Q Consensus 449 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~ 525 (674)
|++|++++|.+ ...+..+..+++ |+.|++++|....+|..+...+ +|+.|+++.+......|..
T Consensus 355 L~~L~L~~N~l-------------~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 355 LASLNLAYNQI-------------TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp ESEEECCSSEE-------------EECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred CCEEECCCCcc-------------ccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 66666666554 134455677777 8888888887777777765544 7888888766554433332
Q ss_pred -C-------cccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCC------CCccccceeeeccccC
Q 048755 526 -D-------GISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGR------EVFPKLNRLQIEHNGN 591 (674)
Q Consensus 526 -~-------~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~------~~l~~L~~L~l~~~~~ 591 (674)
. ...++..|++.++.....+..+...+++|+.|+|.+|... .++..... .++++|+.|++++| .
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~ 499 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN-K 499 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS-C
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCC-c
Confidence 2 2336777777766655666666666777777777776533 33322110 11236777777665 3
Q ss_pred ceee
Q 048755 592 LVRL 595 (674)
Q Consensus 592 l~~l 595 (674)
++.+
T Consensus 500 l~~l 503 (636)
T 4eco_A 500 LTKL 503 (636)
T ss_dssp CCBC
T ss_pred CCcc
Confidence 4433
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=4.4e-25 Score=243.12 Aligned_cols=351 Identities=17% Similarity=0.142 Sum_probs=228.1
Q ss_pred ccccceeEeeccccccCCCCC--cCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEE
Q 048755 306 TLKVCTAISLFNTNISELPQG--FECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTL 382 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L 382 (674)
.++.++.|+++++.+..++.. ..+++|++|++++|.+..+++..|.++++|++|++++|.+..+| ..++.+++|++|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 356789999999988877643 38899999999999988888888899999999999999988764 678899999999
Q ss_pred EcCCcCCCCc--ccccCcCCccEEecCCCCchh--chHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCC----CeEEe
Q 048755 383 SLDFCILGDI--AIIGDLKKLEILTLRGSDMEK--LVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRL----EELYI 454 (674)
Q Consensus 383 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l 454 (674)
++++|.+... ..++.+++|++|++++|.+.. +|..++++++|++|++++|. +..+++..++.+++| ++|++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhccc
Confidence 9999988773 358899999999999998875 68889999999999999884 455554446666666 67777
Q ss_pred ccCCCccccccccCC-----------------------------------------------------------------
Q 048755 455 GQSPIMWGKVGGVDG----------------------------------------------------------------- 469 (674)
Q Consensus 455 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 469 (674)
.+|.+..........
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 776553221110000
Q ss_pred ----cccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCC--------------------
Q 048755 470 ----ERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPW-------------------- 525 (674)
Q Consensus 470 ----~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------------------- 525 (674)
......+..++.+++|+.|++.++....+|.++..+ +|+.|+++.+... .+|..
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~ 342 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFS 342 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccc
Confidence 001112344566788889998888877888877766 7777777655433 33321
Q ss_pred -CcccceeEEeecCCCceecc--hhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeecccc------------
Q 048755 526 -DGISRKFKLKLTNGANICLN--EGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNG------------ 590 (674)
Q Consensus 526 -~~~~~~~~l~~~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~------------ 590 (674)
...+++..|++.++...... +.....+++|+.|++.+|.... .+.. ...+++|+.|++.+|.
T Consensus 343 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEE--EETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-cccc--ccccCCCCEEEccCCccccccchhhhhc
Confidence 12234555555443322221 2223345666666666554222 1111 1334444444444431
Q ss_pred ------------CceeeeecCCCCCCCCCCCCccccccccCcccc-cccccCCCCccccCCccEEEEecCCCcccc-CCc
Q 048755 591 ------------NLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNL-EEICCGPLTAESFSKLKTIRVEGCDKLKNV-FPL 656 (674)
Q Consensus 591 ------------~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l-~~~ 656 (674)
.++... +.....+++|+.|++.+|.-. ..+ |..+..+++|++|++++|. +..+ |..
T Consensus 420 l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~---p~~~~~l~~L~~L~l~~n~-l~~~~~~~ 489 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAF------NGIFNGLSSLEVLKMAGNSFQENFL---PDIFTELRNLTFLDLSQCQ-LEQLSPTA 489 (570)
T ss_dssp CTTCCEEECTTSCCEECC------TTTTTTCTTCCEEECTTCEEGGGEE---CSCCTTCTTCCEEECTTSC-CCEECTTT
T ss_pred CCCCCEEeCcCCcccccc------hhhhhcCCcCcEEECcCCcCccccc---hhhhhcccCCCEEECCCCc-cccCChhh
Confidence 111110 002344667777777776422 134 4556778888888888874 5566 334
Q ss_pred hhhhhcccceeccccc
Q 048755 657 VIELTQLRTLELKNVF 672 (674)
Q Consensus 657 ~~~l~~L~~L~l~~c~ 672 (674)
...+++|+.|+++++.
T Consensus 490 ~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hhcccCCCEEeCCCCc
Confidence 4448888888888763
No 10
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5.3e-25 Score=235.47 Aligned_cols=323 Identities=19% Similarity=0.285 Sum_probs=213.2
Q ss_pred ccccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEE
Q 048755 304 KDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLS 383 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 383 (674)
...++++++|+++++.+..++....+++|+.|++++|.+..+++ +.++++|++|++++|.+..++. ++.+++|++|+
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLE 140 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEE
Confidence 34456666677776666666654466677777777666666555 5667777777777776666654 66667777777
Q ss_pred cCCcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccc
Q 048755 384 LDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGK 463 (674)
Q Consensus 384 l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 463 (674)
+++|.+..++.++.+++|++|++. +.+..++. +.++++|++|++++|. +..++. +..+++|++|++++|.+.
T Consensus 141 l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~--- 212 (466)
T 1o6v_A 141 LSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNK-VSDISV--LAKLTNLESLIATNNQIS--- 212 (466)
T ss_dssp EEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCC---
T ss_pred CCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCc-CCCChh--hccCCCCCEEEecCCccc---
Confidence 777666665556666666666664 33333333 6677777777777773 444432 677777777777777652
Q ss_pred ccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCcee
Q 048755 464 VGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANIC 543 (674)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 543 (674)
....++.+++|+.|+++++....++ .+..+++|+.|+++.+... ..+++..++++..|.+.++....
T Consensus 213 -----------~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 213 -----------DITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISN 279 (466)
T ss_dssp -----------CCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCC
T ss_pred -----------ccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCccCc
Confidence 1112556778888888887766653 5677788888888766433 33445556677777777655444
Q ss_pred cchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccc
Q 048755 544 LNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNL 623 (674)
Q Consensus 544 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L 623 (674)
.++ ...+++|+.|++.+|.. ..++. ...+++|+.|++++| .++.+. ....+++|+.|++++| .+
T Consensus 280 ~~~--~~~l~~L~~L~L~~n~l-~~~~~---~~~l~~L~~L~L~~n-~l~~~~--------~~~~l~~L~~L~l~~n-~l 343 (466)
T 1o6v_A 280 ISP--LAGLTALTNLELNENQL-EDISP---ISNLKNLTYLTLYFN-NISDIS--------PVSSLTKLQRLFFYNN-KV 343 (466)
T ss_dssp CGG--GTTCTTCSEEECCSSCC-SCCGG---GGGCTTCSEEECCSS-CCSCCG--------GGGGCTTCCEEECCSS-CC
T ss_pred ccc--ccCCCccCeEEcCCCcc-cCchh---hcCCCCCCEEECcCC-cCCCch--------hhccCccCCEeECCCC-cc
Confidence 433 44578888888888753 33332 367888888888887 344332 3456888899988887 45
Q ss_pred cccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 624 EEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 624 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
..+ ..+..+++|+.|++++|. +.++++ ...+++|+.|++++|+
T Consensus 344 ~~~----~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 344 SDV----SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCC----GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEE
T ss_pred CCc----hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEEeccCCc
Confidence 554 245678899999998875 666655 4558999999988763
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2.8e-25 Score=252.15 Aligned_cols=342 Identities=20% Similarity=0.198 Sum_probs=215.3
Q ss_pred ccceeEeecccccc-CCCCCc-CCCCCcEEEcccCCCc-ccCchhhcCCCcceEEEecCcccC-CCCccccccc-CCcEE
Q 048755 308 KVCTAISLFNTNIS-ELPQGF-ECPQLKYFHIRNDPSL-RISDNIFTGMTELRVLDFTEMHLL-ALPSSLGLLQ-NLQTL 382 (674)
Q Consensus 308 ~~~~~l~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~~~~l~-~L~~L 382 (674)
++++.|++++|.+. .+|..+ .+++|+.|++++|... .++...+.++++|++|++++|.+. .+|..+..+. +|++|
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 44555555555543 333333 5555555555555554 344444555666666666666555 4555555555 56666
Q ss_pred EcCCcCCCC--cccccC--cCCccEEecCCCCch-hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccC
Q 048755 383 SLDFCILGD--IAIIGD--LKKLEILTLRGSDME-KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQS 457 (674)
Q Consensus 383 ~l~~~~~~~--~~~~~~--l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 457 (674)
++++|.+.. +..+.. +++|++|++++|.+. .+|..+.++++|++|++++|......|.. ++.+++|+.|++.+|
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCC
Confidence 666665543 334443 566777777777666 56677777777888887777555555554 677777888877777
Q ss_pred CCccccccccCCcccccchhhhcCCCCccEEEeeeccCC-CCCcccccccCccEEEEEEcccccccCCCC-cccceeEEe
Q 048755 458 PIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK-TLPRDLSFFKMLQRYRISIGYDWWSVGPWD-GISRKFKLK 535 (674)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~l~ 535 (674)
.+ ....+..++.+++|+.|++++|... .+|.++..+++|+.|+++.|.....+|.+. .++++..|+
T Consensus 453 ~l------------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 453 ML------------EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CC------------CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cc------------cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 65 2334566777788888888877754 567777888888888887776655566553 455777777
Q ss_pred ecCCCceecchhHHhhhccccEEEecCCCCccccccCC------------------------------------------
Q 048755 536 LTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEP------------------------------------------ 573 (674)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~------------------------------------------ 573 (674)
+.++......+.....+++|+.|++.+|.....++...
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 77666554444445557888888887775443332111
Q ss_pred --------------------------CCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccc
Q 048755 574 --------------------------GREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEIC 627 (674)
Q Consensus 574 --------------------------~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 627 (674)
..+.+++|+.|+++++ +++.. .+...+.+++|+.|+++++.--..+
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~------ip~~l~~l~~L~~L~Ls~N~l~g~i- 672 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGY------IPKEIGSMPYLFILNLGHNDISGSI- 672 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSC------CCGGGGGCTTCCEEECCSSCCCSCC-
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCC-ccccc------CCHHHhccccCCEEeCcCCccCCCC-
Confidence 1123566777777776 23211 1114556778888888876433355
Q ss_pred cCCCCccccCCccEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 628 CGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 628 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
|..++.+++|+.|++++|.--..+|.....+++|+.|++++++
T Consensus 673 --p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 673 --PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp --CGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred --ChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 6667888888888888865444666666668888888888763
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.7e-25 Score=251.93 Aligned_cols=333 Identities=13% Similarity=0.117 Sum_probs=239.2
Q ss_pred ccccccceeEeeccccccC------------------CCCCc---CCCCCcEEEcccCCCcccCchhhcCCCcceEEEec
Q 048755 304 KDTLKVCTAISLFNTNISE------------------LPQGF---ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFT 362 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~ 362 (674)
...+++++.|++++|.+.. +|..+ .+++|+.|++++|......+..|.++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 3456788889999888877 88876 58899999998887666555667889999999999
Q ss_pred Ccc-cCC--CCccccccc-------CCcEEEcCCcCCCC-cc--cccCcCCccEEecCCCCchhchHhhcCCCCCcEEeC
Q 048755 363 EMH-LLA--LPSSLGLLQ-------NLQTLSLDFCILGD-IA--IIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDL 429 (674)
Q Consensus 363 ~~~-~~~--lp~~~~~l~-------~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l 429 (674)
+|. ++. +|..++.+. +|++|++++|.+.. |. .++.+++|++|++++|.+..+| .++++++|++|++
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence 887 774 787777666 89999999888877 44 5888889999999888888888 7888888889988
Q ss_pred CCCCCCCCCChhhhhCCCC-CCeEEeccCCCccccccccCCcc-------------c----ccchhhhc--CCCCccEEE
Q 048755 430 SYCFNLQVIPPNVISSLSR-LEELYIGQSPIMWGKVGGVDGER-------------R----NASLDELN--NLSKLTSLE 489 (674)
Q Consensus 430 ~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~-------------~----~~~~~~l~--~l~~L~~L~ 489 (674)
++|.. ..+|.. +..+++ |+.|++++|.+...+. ...... . ...+..++ .+++|+.|+
T Consensus 603 s~N~l-~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 603 DYNQI-EEIPED-FCAFTDQVEGLGFSHNKLKYIPN-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CSSCC-SCCCTT-SCEECTTCCEEECCSSCCCSCCS-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred cCCcc-ccchHH-HhhccccCCEEECcCCCCCcCch-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 88854 477766 788888 8888888887642221 110000 0 00011122 334899999
Q ss_pred eeeccCCCCCcccc-cccCccEEEEEEcccccccCCCCc---------ccceeEEeecCCCceecchhHH-hhhccccEE
Q 048755 490 ILIQDEKTLPRDLS-FFKMLQRYRISIGYDWWSVGPWDG---------ISRKFKLKLTNGANICLNEGHI-MQLKGIEDL 558 (674)
Q Consensus 490 l~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~~~~-~~l~~L~~L 558 (674)
+++|....+|..+. .+++|+.|+++.+... .+|.+.. ++++..|++.++.....+..+. ..+++|+.|
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L 758 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM 758 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence 99999888988774 7899999999877544 5555321 1278888888776666665554 368999999
Q ss_pred EecCCCCccccccCCCCCCccccceeeeccccCce--eeeecCCCCCCCCCCCCccccccccCcccccccccCCCCcccc
Q 048755 559 TLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLV--RLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESF 636 (674)
Q Consensus 559 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l 636 (674)
+|++|.... ++.. ...+++|+.|++++|..+. .+. ...+.....+++|+.|++++|. +..+ |..+ +
T Consensus 759 ~Ls~N~L~~-lp~~--l~~L~~L~~L~Ls~N~~ls~N~l~---~~ip~~l~~L~~L~~L~Ls~N~-L~~I---p~~l--~ 826 (876)
T 4ecn_A 759 DVSYNCFSS-FPTQ--PLNSSQLKAFGIRHQRDAEGNRIL---RQWPTGITTCPSLIQLQIGSND-IRKV---DEKL--T 826 (876)
T ss_dssp ECCSSCCSS-CCCG--GGGCTTCCEEECCCCBCTTCCBCC---CCCCTTGGGCSSCCEEECCSSC-CCBC---CSCC--C
T ss_pred EeCCCCCCc-cchh--hhcCCCCCEEECCCCCCccccccc---ccChHHHhcCCCCCEEECCCCC-CCcc---CHhh--c
Confidence 999986543 5433 3679999999998753111 110 1112245678999999999985 5777 4433 3
Q ss_pred CCccEEEEecCCCccccC
Q 048755 637 SKLKTIRVEGCDKLKNVF 654 (674)
Q Consensus 637 ~~L~~L~i~~C~~L~~l~ 654 (674)
++|+.|++++|+ +..+.
T Consensus 827 ~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 827 PQLYILDIADNP-NISID 843 (876)
T ss_dssp SSSCEEECCSCT-TCEEE
T ss_pred CCCCEEECCCCC-CCccC
Confidence 899999999987 44443
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=2e-25 Score=253.44 Aligned_cols=340 Identities=19% Similarity=0.142 Sum_probs=177.5
Q ss_pred cccceeEeeccccccC-CCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCC-CCcccccccCCcEEEc
Q 048755 307 LKVCTAISLFNTNISE-LPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLA-LPSSLGLLQNLQTLSL 384 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~~~~l~~L~~L~l 384 (674)
..+++.|++++|.+.. +|....+++|++|++++|.+....+..+.++++|++|++++|.+.. +|.. .+++|++|++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L 276 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence 3444555555444433 2222244555555555544444333344455555555555554442 2221 4445555555
Q ss_pred CCcCCCC--cccccCc-CCccEEecCCCCch-hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCc
Q 048755 385 DFCILGD--IAIIGDL-KKLEILTLRGSDME-KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIM 460 (674)
Q Consensus 385 ~~~~~~~--~~~~~~l-~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 460 (674)
++|.+.. |..+... ++|++|++++|.+. .+|..++++++|++|++++|...+.+|...++.+++|++|++++|.+
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l- 355 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF- 355 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE-
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc-
Confidence 5554431 3333332 55555555555444 44444555555555555555333344443345555555555555443
Q ss_pred cccccccCCcccccchhhhcCCC-CccEEEeeeccC-CCCCccccc--ccCccEEEEEEcccccccCCC-CcccceeEEe
Q 048755 461 WGKVGGVDGERRNASLDELNNLS-KLTSLEILIQDE-KTLPRDLSF--FKMLQRYRISIGYDWWSVGPW-DGISRKFKLK 535 (674)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~-~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~l~ 535 (674)
....+..+..++ +|+.|++++|.. +.+|..+.. +++|+.|+++.|.....+|.. ..+.++..|+
T Consensus 356 -----------~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 424 (768)
T 3rgz_A 356 -----------SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424 (768)
T ss_dssp -----------EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEE
T ss_pred -----------CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEE
Confidence 112233344443 555555555542 233444433 455666666554433333332 2334566666
Q ss_pred ecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccc
Q 048755 536 LTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESL 615 (674)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L 615 (674)
+.++......+.....+++|+.|++.+|.....++..+ ..+++|+.|++++|. ++.. .+.....+++|+.|
T Consensus 425 Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~-l~~~------~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFND-LTGE------IPSGLSNCTNLNWI 495 (768)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSC-CCSC------CCGGGGGCTTCCEE
T ss_pred CcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCc-ccCc------CCHHHhcCCCCCEE
Confidence 65544433333334446667777776665444444332 456777777777662 2211 11134567888888
Q ss_pred cccCcccccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 616 FLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 616 ~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
++++|.-...+ |..++.+++|++|++++|.-...+|.....+++|+.|+++++.
T Consensus 496 ~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 496 SLSNNRLTGEI---PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EccCCccCCcC---ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 88887543355 5567788899999999886555776666668999999988764
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.93 E-value=1.6e-25 Score=248.21 Aligned_cols=336 Identities=14% Similarity=0.176 Sum_probs=191.6
Q ss_pred ccccccceeEeeccccccC------------------CCCCcC---CCCCcEEEcccCCCcccCchhhcCCCcceEEEec
Q 048755 304 KDTLKVCTAISLFNTNISE------------------LPQGFE---CPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFT 362 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~~~~------------------~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~ 362 (674)
...+++++.|+++++.+.. +|..+. +++|++|++++|......+..|.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 3445677888888887776 777654 7788888888877665555566778888888888
Q ss_pred Ccc-cCC--CCcccccc------cCCcEEEcCCcCCCC-cc--cccCcCCccEEecCCCCch-hchHhhcCCCCCcEEeC
Q 048755 363 EMH-LLA--LPSSLGLL------QNLQTLSLDFCILGD-IA--IIGDLKKLEILTLRGSDME-KLVEEMGELTQLRLLDL 429 (674)
Q Consensus 363 ~~~-~~~--lp~~~~~l------~~L~~L~l~~~~~~~-~~--~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~~L~~L~l 429 (674)
+|. ++. +|..++.+ ++|++|++++|.++. |. .++.+++|++|++++|.+. .+| .++.+++|++|++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 887 663 67777665 788888888887766 44 5777888888888888777 777 6777778888888
Q ss_pred CCCCCCCCCChhhhhCCCC-CCeEEeccCCCccccccccCCcccccchhhhcCC--CCccEEEeeeccCC-CCCcccc--
Q 048755 430 SYCFNLQVIPPNVISSLSR-LEELYIGQSPIMWGKVGGVDGERRNASLDELNNL--SKLTSLEILIQDEK-TLPRDLS-- 503 (674)
Q Consensus 430 ~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~-~~~~~l~-- 503 (674)
++|. +..+|.. ++.+++ |++|++++|.+.. .+..+..+ ++|+.|++++|... ..|..+.
T Consensus 361 ~~N~-l~~lp~~-l~~l~~~L~~L~Ls~N~l~~-------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 361 AYNQ-ITEIPAN-FCGFTEQVENLSFAHNKLKY-------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CSSE-EEECCTT-SEEECTTCCEEECCSSCCSS-------------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred CCCc-cccccHh-hhhhcccCcEEEccCCcCcc-------------cchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 7774 3366655 677777 8888887776531 12222222 25555555555432 2333333
Q ss_pred -----cccCccEEEEEEcccccccCCC--CcccceeEEeecCCCceecchhHHhh-------hccccEEEecCCCCcccc
Q 048755 504 -----FFKMLQRYRISIGYDWWSVGPW--DGISRKFKLKLTNGANICLNEGHIMQ-------LKGIEDLTLDGLPDMKNV 569 (674)
Q Consensus 504 -----~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~-------l~~L~~L~L~~~~~~~~~ 569 (674)
.+++|+.|+++.+... .+|.. ..++++..|++.++.....+...... +++|+.|+|.+|... .+
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 503 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL 503 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC
T ss_pred ccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-cc
Confidence 4445555555444322 33321 12334444554443333333322221 125666666655432 33
Q ss_pred ccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcc------cccccccCCCCccccCCccEEE
Q 048755 570 LCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLR------NLEEICCGPLTAESFSKLKTIR 643 (674)
Q Consensus 570 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~~~~~~~~~~~l~~L~~L~ 643 (674)
+.......+++|+.|++++| .++.++. ....+++|+.|+++++. -...+ |..++.+++|++|+
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N-~l~~ip~-------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~---p~~l~~l~~L~~L~ 572 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYN-SFSKFPT-------QPLNSSTLKGFGIRNQRDAQGNRTLREW---PEGITLCPSLTQLQ 572 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSS-CCSSCCC-------GGGGCSSCCEEECCSCBCTTCCBCCCCC---CTTGGGCSSCCEEE
T ss_pred ChhhhhccCCCcCEEECCCC-CCCCcCh-------hhhcCCCCCEEECCCCcccccCcccccC---hHHHhcCCCCCEEE
Confidence 33221124566666666555 2322211 23345566666664322 12223 34455556666666
Q ss_pred EecCCCccccCCchhhhhcccceecccc
Q 048755 644 VEGCDKLKNVFPLVIELTQLRTLELKNV 671 (674)
Q Consensus 644 i~~C~~L~~l~~~~~~l~~L~~L~l~~c 671 (674)
+++|. +..+|... .++|+.|+++++
T Consensus 573 Ls~N~-l~~ip~~~--~~~L~~L~Ls~N 597 (636)
T 4eco_A 573 IGSND-IRKVNEKI--TPNISVLDIKDN 597 (636)
T ss_dssp CCSSC-CCBCCSCC--CTTCCEEECCSC
T ss_pred CCCCc-CCccCHhH--hCcCCEEECcCC
Confidence 66543 35555443 256666666555
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=2.3e-24 Score=239.14 Aligned_cols=278 Identities=17% Similarity=0.173 Sum_probs=169.6
Q ss_pred cccccCCcEEEcCCcCCCC-cccccCcCCccEEecCCCCchhc-hHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCC
Q 048755 373 LGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTLRGSDMEKL-VEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLE 450 (674)
Q Consensus 373 ~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 450 (674)
++.+++|++|++++|.++. |..++.+++|++|++++|.+..+ |..+..+++|++|++++|.....++...++.+++|+
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 4445555555555555444 34455555555555555555543 234555555555555555444344443345555555
Q ss_pred eEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCC-CcccccccCccEEEEEEcccccccCC--CCc
Q 048755 451 ELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIGYDWWSVGP--WDG 527 (674)
Q Consensus 451 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~ 527 (674)
+|++++|.+.. .......++.+++|+.|++++|....+ |..+..+++|+.|+++.+......+. +..
T Consensus 354 ~L~l~~n~l~~----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 354 ELDLSHDDIET----------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp EEECCSSCCCE----------EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred EEECCCCcccc----------ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 55555554410 011134567778888888887765444 45667778888888876654433222 345
Q ss_pred ccceeEEeecCCCceecchhHHhhhccccEEEecCCCCcccc-ccCCCCCCccccceeeeccccCceeeeecCCCCCCCC
Q 048755 528 ISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNV-LCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPT 606 (674)
Q Consensus 528 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 606 (674)
++++..|++.++.....++.....+++|+.|++.+|...... +.......+++|+.|++++| .++.+... ..
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~------~~ 496 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQH------AF 496 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTT------TT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChh------hh
Confidence 567788888766655555555556788888888888654322 11122366888888888887 45554321 34
Q ss_pred CCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCchhh-hhcccceeccccc
Q 048755 607 IAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIE-LTQLRTLELKNVF 672 (674)
Q Consensus 607 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~-l~~L~~L~l~~c~ 672 (674)
..+++|+.|+++++. +.... +..+..+++| +|++++| ++..+++.... +++|+.|++++++
T Consensus 497 ~~l~~L~~L~Ls~N~-l~~~~--~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNR-LTSSS--IEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TTCTTCCEEECCSSC-CCGGG--GGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred ccccCCCEEECCCCc-cCcCC--hhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCC
Confidence 568899999998874 44332 4456778888 8999886 46677666544 8999999998864
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.5e-24 Score=231.79 Aligned_cols=349 Identities=18% Similarity=0.181 Sum_probs=222.2
Q ss_pred ccccceeEeeccccccCC-CCCc-CCCCCcEEEcccCCCc-ccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcE
Q 048755 306 TLKVCTAISLFNTNISEL-PQGF-ECPQLKYFHIRNDPSL-RISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQT 381 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~ 381 (674)
.++++++|+++++.+..+ |..+ .+++|++|++++|... .+++..|.++++|++|++++|.+..+ |..++.+++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 346677777777777655 3333 6777777777777664 45566667777777777777777654 566777777777
Q ss_pred EEcCCcCCCC--ccc--ccCcCCccEEecCCCCchhc-hHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCC--CCCCeEE
Q 048755 382 LSLDFCILGD--IAI--IGDLKKLEILTLRGSDMEKL-VEE-MGELTQLRLLDLSYCFNLQVIPPNVISSL--SRLEELY 453 (674)
Q Consensus 382 L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~~~~l-p~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~ 453 (674)
|++++|.+.. +.. ++.+++|++|++++|.+..+ |.. +.++++|++|++++|......+. .+..+ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE-DLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT-TSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh-hhhccccccccccc
Confidence 7777777765 333 66777777777777777655 333 66777777777777743333332 24444 5667777
Q ss_pred eccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCC-CCccccc---ccCccEEEEEEccccccc------C
Q 048755 454 IGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKT-LPRDLSF---FKMLQRYRISIGYDWWSV------G 523 (674)
Q Consensus 454 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~l~~---~~~L~~L~l~~~~~~~~~------~ 523 (674)
+.++.+....... ........+..+++|+.|++++|.... .|..+.. .++|+.|+++.+...... +
T Consensus 187 l~~n~l~~~~~~~----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 187 LSSITLQDMNEYW----LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp CTTCBCTTCSTTC----TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccCcccccchhh----ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 7766652211100 000111223355788888888876432 3333322 267777777654322110 0
Q ss_pred C-----CC--cccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeee
Q 048755 524 P-----WD--GISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLV 596 (674)
Q Consensus 524 ~-----~~--~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 596 (674)
. +. ...++..|++.++......+.....+++|+.|++.+|......+.. ..++++|++|++++| .++.+.
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~~~ 339 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGLTHLLKLNLSQN-FLGSID 339 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSS-CCCEEC
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCcccCCEEECCCC-ccCCcC
Confidence 0 00 1136777887766666655555667899999999988754433322 367899999999988 555543
Q ss_pred ecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCchhh-hhcccceeccccc
Q 048755 597 DTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIE-LTQLRTLELKNVF 672 (674)
Q Consensus 597 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~-l~~L~~L~l~~c~ 672 (674)
.. ....+++|+.|+++++. ++.+. +..+..+++|++|++++| +++++|+.... +++|+.|++++++
T Consensus 340 ~~------~~~~l~~L~~L~Ls~N~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 340 SR------MFENLDKLEVLDLSYNH-IRALG--DQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GG------GGTTCTTCCEEECCSSC-CCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hh------HhcCcccCCEEECCCCc-ccccC--hhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 21 34568899999999874 55442 445678899999999985 58888776544 8999999998754
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.2e-24 Score=241.40 Aligned_cols=342 Identities=15% Similarity=0.115 Sum_probs=220.2
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~ 389 (674)
+.++.++..+..+|..+. ++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 467788888999998764 8999999999999999998899999999999999999977 66799999999999999988
Q ss_pred CC--cccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCC-CCChhhhhCCCCCCeEEeccCCCcccccc
Q 048755 390 GD--IAIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQ-VIPPNVISSLSRLEELYIGQSPIMWGKVG 465 (674)
Q Consensus 390 ~~--~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 465 (674)
.. |..++.+++|++|++++|.+..+| ..++++++|++|++++|.... .+|.. ++++++|++|++++|.+......
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceecChh
Confidence 77 578999999999999999999877 669999999999999996544 45665 89999999999999987432211
Q ss_pred ccC---------------CcccccchhhhcCCCCccEEEeeeccCC--CCCcc---------------------------
Q 048755 466 GVD---------------GERRNASLDELNNLSKLTSLEILIQDEK--TLPRD--------------------------- 501 (674)
Q Consensus 466 ~~~---------------~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~--------------------------- 501 (674)
... ...............+|+.|+++++... ..|..
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccC
Confidence 000 0000001111111224555555544321 01111
Q ss_pred -----------------------------cccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhh
Q 048755 502 -----------------------------LSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQL 552 (674)
Q Consensus 502 -----------------------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 552 (674)
+..+++|+.|+++.+.. ..+|.+....++..|.+.++.....+ .+ .+
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l~~lp-~~--~l 327 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQLKQFP-TL--DL 327 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCCSSCC-CC--CC
T ss_pred hHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc-hhhhhccccccCCEEEcccccCcccc-cC--CC
Confidence 22334444444443322 23333333334444554444433333 12 35
Q ss_pred ccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCC
Q 048755 553 KGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLT 632 (674)
Q Consensus 553 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~ 632 (674)
++|+.|++.+|...... ....+++|++|++++| .++.+... +.....+++|+.|++++|. +..+ +..
T Consensus 328 ~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n-~l~~~~~~----~~~~~~~~~L~~L~L~~n~-l~~~---~~~ 394 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF----KKVALPSLSYLDLSRN-ALSFSGCC----SYSDLGTNSLRHLDLSFNG-AIIM---SAN 394 (606)
T ss_dssp SSCCEEEEESCSSCEEC----CCCCCTTCCEEECCSS-CEEEEEEC----CHHHHCCSCCCEEECCSCS-EEEE---CCC
T ss_pred CccceeeccCCcCccch----hhccCCCCCEEECcCC-ccCCCcch----hhhhccCCcccEeECCCCc-cccc---hhh
Confidence 55555555555433322 1245666666666655 33332100 0023456777777777764 5555 445
Q ss_pred ccccCCccEEEEecCCCccccCC--chhhhhcccceeccccc
Q 048755 633 AESFSKLKTIRVEGCDKLKNVFP--LVIELTQLRTLELKNVF 672 (674)
Q Consensus 633 ~~~l~~L~~L~i~~C~~L~~l~~--~~~~l~~L~~L~l~~c~ 672 (674)
+..+++|++|++++|. +..+++ ....+++|+.|++++|.
T Consensus 395 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 395 FMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTN 435 (606)
T ss_dssp CTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSC
T ss_pred ccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEECcCCC
Confidence 6778888888888864 444443 33348888888888764
No 18
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.92 E-value=1.1e-24 Score=240.45 Aligned_cols=251 Identities=21% Similarity=0.311 Sum_probs=178.6
Q ss_pred CCCCcHHHHHHHHHHhhhh-cccC-ceEEEEEecCCcCHHHHHHH---HHHHhCCCC----cccch-HHHHHHHHHHHHc
Q 048755 1 MGGIGKTTLVKEVGRQAKE-NNLF-EKVISSRVSQTPQIKEIQRE---IAEKLGLKI----DEESE-TVRAWRLLEQLKK 70 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~~---i~~~l~~~~----~~~~~-~~~~~~~~~~l~~ 70 (674)
|||+||||||++++++... ..+| ++++|++++.. +...++.. ++..++... ..... ......+...+.+
T Consensus 155 ~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 233 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233 (591)
T ss_dssp CTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc
Confidence 7999999999999998754 5669 58999999865 33334333 445555311 11122 2333344444443
Q ss_pred -CCcEEEEEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEec---CCCCHHHHHHHHHHHhCCCCC
Q 048755 71 -ETKILIILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVV---DVLNEKEAWSLFKKMTGDCIE 146 (674)
Q Consensus 71 -~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~ 146 (674)
.+++||||||||+..++..+ ..|++||||||++.++.... ...+.+ ++|+.++++++|...++..
T Consensus 234 ~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-- 302 (591)
T 1z6t_A 234 KHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-- 302 (591)
T ss_dssp TCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC--
T ss_pred CCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC--
Confidence 27999999999987766532 45899999999998864222 344555 5899999999999998742
Q ss_pred CCchhHHHHHHHHHhCCchhhHHHHHHHHhcCChHHHHHHHHHhccccccCCCc---ccccceeeeeeecccCCChHHHH
Q 048755 147 NGELKSVATEVVKECAGLPIAIVPVAKALKNKSLYEWRNALRQLKRPFLRSFSG---TQAVAAYSTIELSYYQLEGEELR 223 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~---~~~~~~~~~l~~s~~~L~~~~l~ 223 (674)
.....+.+++|+++|+|+|+|++.+|.+++... ..|..+++.+.......... ....++..++..||+.|+++ .+
T Consensus 303 ~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~ 380 (591)
T 1z6t_A 303 KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IK 380 (591)
T ss_dssp GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-TH
T ss_pred cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HH
Confidence 223356789999999999999999999998764 36888888877654322211 11246778999999999998 69
Q ss_pred HHHHHhcccc---ccchhhhhhhhcccccccccccHHHHHHHHHHHHHHHHhhcccc
Q 048755 224 RTFLLIGYAF---ISCVKDVICYGMGLGLFQNINTLEEARDRAHTLVDKLKNSCLLL 277 (674)
Q Consensus 224 ~~f~~~a~fp---~~~~~~li~~w~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 277 (674)
.||.++|+|| .++.+.+...|.+.+ + ...+.+++|.++++++
T Consensus 381 ~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~----~~~~~l~~L~~~~Ll~ 425 (591)
T 1z6t_A 381 DYYTDLSILQKDVKVPTKVLCILWDMET--------E----EVEDILQEFVNKSLLF 425 (591)
T ss_dssp HHHHHGGGCCTTCCEEHHHHHHHHTCCH--------H----HHHHHHHHHHHTTSSE
T ss_pred HHHHHccccCCCCccCHHHHHHHhccCH--------H----HHHHHHHHHHhCcCeE
Confidence 9999999998 477778888886541 1 2345666666677764
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-24 Score=225.44 Aligned_cols=300 Identities=17% Similarity=0.167 Sum_probs=180.4
Q ss_pred cccceeEeeccccccCCCCCc--CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEE
Q 048755 307 LKVCTAISLFNTNISELPQGF--ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLS 383 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~ 383 (674)
..+++.+++.++.+..+|... .+++|++|++++|.+..+++..|.++++|++|++++|.+..+| ..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 455666666666666666543 5666667776666666666656666666777777666666553 3456666677777
Q ss_pred cCCcCCCC-ccc-ccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCc
Q 048755 384 LDFCILGD-IAI-IGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIM 460 (674)
Q Consensus 384 l~~~~~~~-~~~-~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 460 (674)
+++|.+.. +.. +..+++|++|++++|.+..++ ..+..+++|++|++++|. ++.++ ++.+++|+.|++.+|.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l- 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL- 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc-
Confidence 66666655 322 456666667766666666554 346666666666666663 33332 45566666666666544
Q ss_pred cccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCC
Q 048755 461 WGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGA 540 (674)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 540 (674)
..+...++|+.|+++++....+|... +++|+.|+++.+...
T Consensus 199 ----------------~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~--------------------- 239 (390)
T 3o6n_A 199 ----------------STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT--------------------- 239 (390)
T ss_dssp ----------------SEEECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCC---------------------
T ss_pred ----------------cccCCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCc---------------------
Confidence 12233456666666666655554432 355666666544321
Q ss_pred ceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCc
Q 048755 541 NICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDL 620 (674)
Q Consensus 541 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c 620 (674)
.. .....+++|+.|++++|......+.. ...+++|+.|+++++ .++.++. ....+++|+.|+++++
T Consensus 240 --~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-------~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 240 --DT--AWLLNYPGLVEVDLSYNELEKIMYHP--FVKMQRLERLYISNN-RLVALNL-------YGQPIPTLKVLDLSHN 305 (390)
T ss_dssp --CC--GGGGGCTTCSEEECCSSCCCEEESGG--GTTCSSCCEEECCSS-CCCEEEC-------SSSCCTTCCEEECCSS
T ss_pred --cc--HHHcCCCCccEEECCCCcCCCcChhH--ccccccCCEEECCCC-cCcccCc-------ccCCCCCCCEEECCCC
Confidence 11 12344677788888777543332322 256777888888776 4555432 2345777888888776
Q ss_pred ccccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceecccc
Q 048755 621 RNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNV 671 (674)
Q Consensus 621 ~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c 671 (674)
.+..+ +..+..+++|++|++++|+ +..++ ...+++|+.|++++.
T Consensus 306 -~l~~~---~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 306 -HLLHV---ERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHN 349 (390)
T ss_dssp -CCCCC---GGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSS
T ss_pred -cceec---CccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCC
Confidence 45555 4445667788888887754 66664 223777777777764
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.4e-24 Score=236.01 Aligned_cols=355 Identities=17% Similarity=0.200 Sum_probs=208.1
Q ss_pred ccceeEeeccccccCCCC-Cc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc-cccccCCcEEEc
Q 048755 308 KVCTAISLFNTNISELPQ-GF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS-LGLLQNLQTLSL 384 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~l 384 (674)
+.+++|+++++.+..++. .+ .+++|++|++++|.+..+++..|.++++|++|++++|.+..+|+. ++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 456666666666655432 22 566666666666666666655566666666666666666655443 666666666666
Q ss_pred CCcCCCC---cccccCcCCccEEecCCCC-chhch-HhhcCCCCCcEEeCCCCCCCC-----------------------
Q 048755 385 DFCILGD---IAIIGDLKKLEILTLRGSD-MEKLV-EEMGELTQLRLLDLSYCFNLQ----------------------- 436 (674)
Q Consensus 385 ~~~~~~~---~~~~~~l~~L~~L~l~~~~-~~~lp-~~~~~l~~L~~L~l~~~~~~~----------------------- 436 (674)
++|.+.. +..++.+++|++|++++|. +..+| ..+..+++|++|++++|....
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 6665543 3455666666666666665 44554 345556666666665553322
Q ss_pred CCChhhhhCCCCCCeEEeccCCCccccccccC---Ccc--c---------------------------------------
Q 048755 437 VIPPNVISSLSRLEELYIGQSPIMWGKVGGVD---GER--R--------------------------------------- 472 (674)
Q Consensus 437 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~--~--------------------------------------- 472 (674)
.++...++.+++|++|++++|.+......... ... .
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 22222234577788888877765432100000 000 0
Q ss_pred --------ccchhh--------------------------hcCCCCccEEEeeeccCCCCCccc-ccccCccEEEEEEcc
Q 048755 473 --------NASLDE--------------------------LNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRISIGY 517 (674)
Q Consensus 473 --------~~~~~~--------------------------l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 517 (674)
...+.. ....++|+.|++.++....+|..+ ..+++|+.|+++.+.
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSC
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCc
Confidence 000000 011245667777777767777666 468888888887766
Q ss_pred cccccC----CCCcccceeEEeecCCCceecch--hHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccC
Q 048755 518 DWWSVG----PWDGISRKFKLKLTNGANICLNE--GHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGN 591 (674)
Q Consensus 518 ~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 591 (674)
.....| .+...+++..|++.++.....+. .....+++|+.|++++|. ++.++.. ...+++|++|++++|.
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~~~~~~L~~L~Ls~N~- 421 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDS--CQWPEKMRFLNLSSTG- 421 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSC--CCCCTTCCEEECTTSC-
T ss_pred cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChh--hcccccccEEECCCCC-
Confidence 543222 13445577888887665544432 345568899999998885 3445433 2567888888888873
Q ss_pred ceeeeec-----------CCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCchh-h
Q 048755 592 LVRLVDT-----------MDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVI-E 659 (674)
Q Consensus 592 l~~l~~~-----------~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~-~ 659 (674)
++.++.. .-........+++|+.|+++++ .++.+ |. ...+++|++|++++| +++.+++... .
T Consensus 422 l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~i---p~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 495 (549)
T 2z81_A 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTL---PD-ASLFPVLLVMKISRN-QLKSVPDGIFDR 495 (549)
T ss_dssp CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSC---CC-GGGCTTCCEEECCSS-CCCCCCTTGGGG
T ss_pred cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcC---CC-cccCccCCEEecCCC-ccCCcCHHHHhc
Confidence 4433211 0000001235778888888876 56666 32 356889999999885 5777776643 4
Q ss_pred hhcccceeccccc
Q 048755 660 LTQLRTLELKNVF 672 (674)
Q Consensus 660 l~~L~~L~l~~c~ 672 (674)
+++|+.|++++++
T Consensus 496 l~~L~~L~l~~N~ 508 (549)
T 2z81_A 496 LTSLQKIWLHTNP 508 (549)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcccCEEEecCCC
Confidence 8899999988764
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.92 E-value=1.1e-23 Score=228.91 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=92.9
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~ 389 (674)
+.++++++.+..+|..+. ++|+.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 456666676666666554 6777777777777666666667777777777777777655 55667777777777777766
Q ss_pred CCcccccCcCCccEEecCCCCchh--chHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCC--CeEEeccCCC
Q 048755 390 GDIAIIGDLKKLEILTLRGSDMEK--LVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRL--EELYIGQSPI 459 (674)
Q Consensus 390 ~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 459 (674)
+.++.. .+++|++|++++|.++. +|..++++++|++|++++|... . ..++.+++| ++|++.+|.+
T Consensus 82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-K---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-G---GGGGGGTTSCEEEEEEEECTT
T ss_pred eecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-h---hhccccccceeeEEEeecccc
Confidence 663333 66777777777776664 4566777777777777766322 2 225556666 6666666654
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.1e-23 Score=224.18 Aligned_cols=312 Identities=17% Similarity=0.149 Sum_probs=212.1
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~ 389 (674)
+.+...+..+..+|..+ .++++.|++++|.+..+++..|.++++|++|+|++|.+..+ |..++.+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 34555666677777655 36788888888888887777778888888888888888765 66788888888888888877
Q ss_pred CC-c-ccccCcCCccEEecCCCCchhc-hHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccc
Q 048755 390 GD-I-AIIGDLKKLEILTLRGSDMEKL-VEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGG 466 (674)
Q Consensus 390 ~~-~-~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 466 (674)
.. + ..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..+++..++.+++|++|++.+|.+.
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~------ 165 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT------ 165 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS------
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc------
Confidence 76 3 3467788888888888887755 4567788888888888873 44444444778888888888887652
Q ss_pred cCCcccccchhhhcCCCCccEEEeeeccCCCCCc-ccccccCccEEEEEEcccccccCCCC-cccceeEEeecCCCceec
Q 048755 467 VDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRISIGYDWWSVGPWD-GISRKFKLKLTNGANICL 544 (674)
Q Consensus 467 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 544 (674)
......+..+++|+.|++.++....++. .+..+++|+.|+++.+.....+|... ...++..|++.++.....
T Consensus 166 ------~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 166 ------SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ------SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred ------ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 2223456777888888888877666554 45777888888887766554444332 223566666665555555
Q ss_pred chhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCccccc
Q 048755 545 NEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLE 624 (674)
Q Consensus 545 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 624 (674)
+......+++|+.|+|++|... .+... ...++++|+.|.++++ .++.+... ....+++|+.|+++++ .++
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~-~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~------~~~~l~~L~~L~L~~N-~l~ 309 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPIS-TIEGS-MLHELLRLQEIQLVGG-QLAVVEPY------AFRGLNYLRVLNVSGN-QLT 309 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCC-EECTT-SCTTCTTCCEEECCSS-CCSEECTT------TBTTCTTCCEEECCSS-CCS
T ss_pred CHHHhcCccccCeeECCCCcCC-ccChh-hccccccCCEEECCCC-ccceECHH------HhcCcccCCEEECCCC-cCc
Confidence 5555666788888888877633 33221 1356788888888776 45544211 3345778888888876 455
Q ss_pred ccccCCCCccccCCccEEEEecCC
Q 048755 625 EICCGPLTAESFSKLKTIRVEGCD 648 (674)
Q Consensus 625 ~~~~~~~~~~~l~~L~~L~i~~C~ 648 (674)
.++. ..+..+++|++|++.+++
T Consensus 310 ~~~~--~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 310 TLEE--SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCCG--GGBSCGGGCCEEECCSSC
T ss_pred eeCH--hHcCCCcccCEEEccCCC
Confidence 5531 224567788888887765
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=1e-23 Score=216.62 Aligned_cols=285 Identities=20% Similarity=0.253 Sum_probs=227.9
Q ss_pred CCCccccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCc
Q 048755 301 WPDKDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQ 380 (674)
Q Consensus 301 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~ 380 (674)
.+....++++++|+++++.+..++....+++|++|++++|.+..++ .+.++++|++|++++|.+..++. +..+++|+
T Consensus 59 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~ 135 (347)
T 4fmz_A 59 IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKMY 135 (347)
T ss_dssp CTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCC
T ss_pred chhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCCcccCchh-hccCCcee
Confidence 3445667899999999999998888669999999999999888875 37999999999999999998876 88999999
Q ss_pred EEEcCCc-CCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 381 TLSLDFC-ILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 381 ~L~l~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
+|++++| ....+..+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|+.|++.+|.+
T Consensus 136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCC
Confidence 9999999 44557779999999999999999988876 889999999999998 4555554 78999999999999876
Q ss_pred ccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCC
Q 048755 460 MWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNG 539 (674)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 539 (674)
. ....+..+++|+.|++++|....++. +..+++|+.|+++.+... .
T Consensus 212 ~--------------~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~------------------ 257 (347)
T 4fmz_A 212 T--------------DITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQIS-D------------------ 257 (347)
T ss_dssp C--------------CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-C------------------
T ss_pred C--------------CCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccC-C------------------
Confidence 2 11227788999999999999888876 888999999999766421 0
Q ss_pred CceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccC
Q 048755 540 ANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRD 619 (674)
Q Consensus 540 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~ 619 (674)
. .....+++|+.|++.+|. +..++. ...+++|+.|++++| .++..... ....+++|+.|++++
T Consensus 258 -----~-~~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~------~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 258 -----I-NAVKDLTKLKMLNVGSNQ-ISDISV---LNNLSQLNSLFLNNN-QLGNEDME------VIGGLTNLTTLFLSQ 320 (347)
T ss_dssp -----C-GGGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECCSS-CCCGGGHH------HHHTCTTCSEEECCS
T ss_pred -----C-hhHhcCCCcCEEEccCCc-cCCChh---hcCCCCCCEEECcCC-cCCCcChh------HhhccccCCEEEccC
Confidence 0 123447899999999885 344432 367899999999998 33332111 234689999999999
Q ss_pred cccccccccCCCCccccCCccEEEEecCC
Q 048755 620 LRNLEEICCGPLTAESFSKLKTIRVEGCD 648 (674)
Q Consensus 620 c~~L~~~~~~~~~~~~l~~L~~L~i~~C~ 648 (674)
|+ ++.+ +. +..+++|++|++++|+
T Consensus 321 n~-l~~~---~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 NH-ITDI---RP-LASLSKMDSADFANQV 344 (347)
T ss_dssp SS-CCCC---GG-GGGCTTCSEESSSCC-
T ss_pred Cc-cccc---cC-hhhhhccceeehhhhc
Confidence 86 6555 22 6789999999999875
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2.9e-24 Score=235.37 Aligned_cols=330 Identities=16% Similarity=0.186 Sum_probs=217.8
Q ss_pred EeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC
Q 048755 313 ISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD 391 (674)
Q Consensus 313 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~ 391 (674)
.+.+++.+..+|..+. ++|++|++++|.+..+++..|.++++|++|++++|.+..++ ..++.+++|++|++++|.+..
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred EECCCCccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 3556677888888664 89999999999999988888899999999999999999764 679999999999999999887
Q ss_pred -c-ccccCcCCccEEecCCCCchh--chHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccccc
Q 048755 392 -I-AIIGDLKKLEILTLRGSDMEK--LVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGV 467 (674)
Q Consensus 392 -~-~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 467 (674)
+ ..++.+++|++|++++|.++. .|..++++++|++|++++|...+.++...++.+++|++|++++|.+........
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL 168 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence 4 348999999999999999984 467799999999999999976788876668999999999999998743221111
Q ss_pred CC-----------cccccchh-hhcCCCCccEEEeeeccCCCCC---ccc-ccccCccEEE-------------------
Q 048755 468 DG-----------ERRNASLD-ELNNLSKLTSLEILIQDEKTLP---RDL-SFFKMLQRYR------------------- 512 (674)
Q Consensus 468 ~~-----------~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~---~~l-~~~~~L~~L~------------------- 512 (674)
.. ......+. .++.+++|+.|++++|....++ ..+ ..+++|+.|+
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 248 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGG
T ss_pred hccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhh
Confidence 00 00000111 1234677777777777654431 111 2233333333
Q ss_pred ---------EEEcccccccCCC--------Cc-----------------------------ccceeEEeecCCCceecch
Q 048755 513 ---------ISIGYDWWSVGPW--------DG-----------------------------ISRKFKLKLTNGANICLNE 546 (674)
Q Consensus 513 ---------l~~~~~~~~~~~~--------~~-----------------------------~~~~~~l~~~~~~~~~~~~ 546 (674)
+..|... ..+.+ .. ..++..+.+.++.....+.
T Consensus 249 ~~~~L~~l~l~~~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~ 327 (549)
T 2z81_A 249 YILELSEVEFDDCTLN-GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327 (549)
T ss_dssp GCTTCCEEEEESCEEE-CCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCH
T ss_pred hhcccccccccccccc-ccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCH
Confidence 3322211 00000 00 0134455555444444555
Q ss_pred hHHhhhccccEEEecCCCCccccccC-CCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccc
Q 048755 547 GHIMQLKGIEDLTLDGLPDMKNVLCE-PGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEE 625 (674)
Q Consensus 547 ~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 625 (674)
.+...+++|+.|++++|......+.. ...+.+++|++|++++| .++.++.... ....+++|+.|++++| .++.
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~----~~~~l~~L~~L~Ls~N-~l~~ 401 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGE----ILLTLKNLTSLDISRN-TFHP 401 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHH----HGGGCTTCCEEECTTC-CCCC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchh----hhhcCCCCCEEECCCC-CCcc
Confidence 55556888999999888755443211 12356788888888887 4444321000 1345677777777776 4555
Q ss_pred cccCCCCccccCCccEEEEecCCCccccC
Q 048755 626 ICCGPLTAESFSKLKTIRVEGCDKLKNVF 654 (674)
Q Consensus 626 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~ 654 (674)
+ |..+..+++|++|++++|. +..++
T Consensus 402 l---p~~~~~~~~L~~L~Ls~N~-l~~l~ 426 (549)
T 2z81_A 402 M---PDSCQWPEKMRFLNLSSTG-IRVVK 426 (549)
T ss_dssp C---CSCCCCCTTCCEEECTTSC-CSCCC
T ss_pred C---ChhhcccccccEEECCCCC-ccccc
Confidence 5 4445556666666666653 44443
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=8.9e-24 Score=232.90 Aligned_cols=300 Identities=16% Similarity=0.164 Sum_probs=154.4
Q ss_pred ccceeEeeccccccCCCCCc--CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEc
Q 048755 308 KVCTAISLFNTNISELPQGF--ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSL 384 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l 384 (674)
.+++.+++.++.+..+|..+ .+++|++|++++|.+..+++..|..+++|++|+|++|.+..+|+ .++.+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 34444555555444444432 44555555555555544444444555555555555555544432 2345555555555
Q ss_pred CCcCCCC-ccc-ccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcc
Q 048755 385 DFCILGD-IAI-IGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMW 461 (674)
Q Consensus 385 ~~~~~~~-~~~-~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 461 (674)
++|.+.. |+. ++.+++|++|++++|.+..+++ .++.+++|++|++++| .+..++ ++.+++|+.|++++|.+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l-- 204 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLL-- 204 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCC--
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCcc--
Confidence 5554444 222 3445555555555555444332 3445555555555554 222222 23444555555544433
Q ss_pred ccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCc
Q 048755 462 GKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGAN 541 (674)
Q Consensus 462 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 541 (674)
..+...++|+.|++++|....++..+ .++|+.|+++.+. .
T Consensus 205 ---------------~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~-----------------------l 244 (597)
T 3oja_B 205 ---------------STLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNN-----------------------L 244 (597)
T ss_dssp ---------------SEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSC-----------------------C
T ss_pred ---------------ccccCCchhheeeccCCccccccccc--CCCCCEEECCCCC-----------------------C
Confidence 11223344555555555444443322 2345555444332 2
Q ss_pred eecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcc
Q 048755 542 ICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLR 621 (674)
Q Consensus 542 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 621 (674)
.. + .....+++|+.|+|++|......+..+ ..+++|+.|++++| .++.++. ....+|+|+.|++++|
T Consensus 245 ~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~Ls~N-~l~~l~~-------~~~~l~~L~~L~Ls~N- 311 (597)
T 3oja_B 245 TD-T-AWLLNYPGLVEVDLSYNELEKIMYHPF--VKMQRLERLYISNN-RLVALNL-------YGQPIPTLKVLDLSHN- 311 (597)
T ss_dssp CC-C-GGGGGCTTCSEEECCSSCCCEEESGGG--TTCSSCCEEECTTS-CCCEEEC-------SSSCCTTCCEEECCSS-
T ss_pred CC-C-hhhccCCCCCEEECCCCccCCCCHHHh--cCccCCCEEECCCC-CCCCCCc-------ccccCCCCcEEECCCC-
Confidence 11 1 223446778888887776444333322 56778888888776 4555432 2345777888888776
Q ss_pred cccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 622 NLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 622 ~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
.+..+ |..+..+++|++|++++|+ +..++. ..+++|+.|++++++
T Consensus 312 ~l~~i---~~~~~~l~~L~~L~L~~N~-l~~~~~--~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 312 HLLHV---ERNQPQFDRLENLYLDHNS-IVTLKL--STHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCC---GGGHHHHTTCSEEECCSSC-CCCCCC--CTTCCCSEEECCSSC
T ss_pred CCCcc---CcccccCCCCCEEECCCCC-CCCcCh--hhcCCCCEEEeeCCC
Confidence 35555 4455677788888887764 555542 236778888777653
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.5e-24 Score=235.08 Aligned_cols=354 Identities=18% Similarity=0.185 Sum_probs=224.9
Q ss_pred cccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcE
Q 048755 305 DTLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQT 381 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~ 381 (674)
...+++++|++++|.+..++.. + .+++|++|++++|.+..+++..|.++++|++|++++|.+..+|. .++.+++|++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 4467889999999988777643 3 78999999999998888888888999999999999999888764 6889999999
Q ss_pred EEcCCcCCCC---cccccCcCCccEEecCCCCchhch-HhhcCCCCC----cEEeCCCCCCCCCCCh-------------
Q 048755 382 LSLDFCILGD---IAIIGDLKKLEILTLRGSDMEKLV-EEMGELTQL----RLLDLSYCFNLQVIPP------------- 440 (674)
Q Consensus 382 L~l~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L----~~L~l~~~~~~~~~~~------------- 440 (674)
|++++|.+.. |..++.+++|++|++++|.++.++ ..++.+++| ++|++++|.. ..+++
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l-~~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC-CEECTTTTTTCEEEEEEE
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc-eecCHHHhccCcceeEec
Confidence 9999987764 677888999999999998887654 445555555 5666655522 11111
Q ss_pred --------------------------------------------------------------------hhhhCCCCCCeE
Q 048755 441 --------------------------------------------------------------------NVISSLSRLEEL 452 (674)
Q Consensus 441 --------------------------------------------------------------------~~l~~l~~L~~L 452 (674)
..++.+++|++|
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 113445566666
Q ss_pred EeccCCCccccccccC---------Ccccccchh--------------------hhcCCCCccEEEeeeccCCCC---Cc
Q 048755 453 YIGQSPIMWGKVGGVD---------GERRNASLD--------------------ELNNLSKLTSLEILIQDEKTL---PR 500 (674)
Q Consensus 453 ~l~~~~~~~~~~~~~~---------~~~~~~~~~--------------------~l~~l~~L~~L~l~~~~~~~~---~~ 500 (674)
++.++.+...+..... .......+. ....+++|+.|+++++..... +.
T Consensus 288 ~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 367 (570)
T 2z63_A 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367 (570)
T ss_dssp EEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEH
T ss_pred EecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccc
Confidence 6665544211110000 000000000 002334444444444433222 23
Q ss_pred ccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecch-hHHhhhccccEEEecCCCCccccccCCCCCCcc
Q 048755 501 DLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNE-GHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFP 579 (674)
Q Consensus 501 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~ 579 (674)
.+..+++|+.|+++.+......+.+..++++..|++.++.....++ .....+++|+.|++.+|......+.. ..+++
T Consensus 368 ~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~ 445 (570)
T 2z63_A 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI--FNGLS 445 (570)
T ss_dssp HHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT--TTTCT
T ss_pred cccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh--hhcCC
Confidence 3344455555555444322111123334466666666544333322 33455788888888888654444333 36789
Q ss_pred ccceeeeccccCc-eeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCchh
Q 048755 580 KLNRLQIEHNGNL-VRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVI 658 (674)
Q Consensus 580 ~L~~L~l~~~~~l-~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~ 658 (674)
+|+.|++.+|.-. ..++ .....+++|+.|++++|. ++.+. +..++.+++|++|++++| ++.++++...
T Consensus 446 ~L~~L~l~~n~l~~~~~p-------~~~~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~ 514 (570)
T 2z63_A 446 SLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQCQ-LEQLS--PTAFNSLSSLQVLNMASN-QLKSVPDGIF 514 (570)
T ss_dssp TCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTSC-CCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTTT
T ss_pred cCcEEECcCCcCccccch-------hhhhcccCCCEEECCCCc-cccCC--hhhhhcccCCCEEeCCCC-cCCCCCHHHh
Confidence 9999999998322 1222 145678999999999984 54442 455678999999999997 5888877654
Q ss_pred h-hhcccceeccccc
Q 048755 659 E-LTQLRTLELKNVF 672 (674)
Q Consensus 659 ~-l~~L~~L~l~~c~ 672 (674)
. +++|+.|++++++
T Consensus 515 ~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 515 DRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcccCCcEEEecCCc
Confidence 4 9999999999854
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5.6e-23 Score=225.34 Aligned_cols=145 Identities=21% Similarity=0.302 Sum_probs=119.3
Q ss_pred cceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCc
Q 048755 309 VCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFC 387 (674)
Q Consensus 309 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~ 387 (674)
..++++++++.+..+|..+. ++|+.|++++|.+..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 34788999999988887664 8999999999999998888889999999999999999876 677889999999999999
Q ss_pred CCCCcccccCcCCccEEecCCCCchhch--HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCC--CeEEeccCCC
Q 048755 388 ILGDIAIIGDLKKLEILTLRGSDMEKLV--EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRL--EELYIGQSPI 459 (674)
Q Consensus 388 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 459 (674)
.++.++.. .+++|++|++++|.+..+| ..++++++|++|++++|.... .. +..+++| ++|++++|.+
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ-LD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT-TT---TGGGTTSCEEEEEEEESSC
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc-Cc---hhhhhhceeeEEEeecccc
Confidence 88874433 8899999999999988654 789999999999999885432 21 4555555 8899888866
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=8.9e-23 Score=216.31 Aligned_cols=305 Identities=16% Similarity=0.145 Sum_probs=213.5
Q ss_pred cccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEc
Q 048755 305 DTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSL 384 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l 384 (674)
..+++++.|+++++.+..+|....+++|+.|++++|.+..++ +..+++|++|++++|.+..+| ++.+++|++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 345778889999988888886558899999999998887764 678899999999999888875 788899999999
Q ss_pred CCcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccc
Q 048755 385 DFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKV 464 (674)
Q Consensus 385 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 464 (674)
++|.++.++ ++.+++|++|++++|.++.++ ++++++|++|++++|..++.++ ++.+++|++|++++|.+..
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---
Confidence 999887754 888899999999999888775 7788899999999887666663 6788889999998887621
Q ss_pred cccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceec
Q 048755 465 GGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICL 544 (674)
Q Consensus 465 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 544 (674)
. .++.+++|+.|++++|....++ +..+++|+.|+++.+... .+| +..++++..|++.++.....
T Consensus 185 ----------l--~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~-~ip-~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 185 ----------L--DVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLT-EID-VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp ----------C--CCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-CCC-CTTCTTCSEEECCSSCCSCC
T ss_pred ----------e--ccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCccc-ccC-ccccCCCCEEEeeCCcCCCc
Confidence 1 1566778888888887766663 677788888888765433 344 44555666676665544333
Q ss_pred chhHHhhhcc----------ccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCC-CCCCCCCccc
Q 048755 545 NEGHIMQLKG----------IEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTP-APTIAFPLLE 613 (674)
Q Consensus 545 ~~~~~~~l~~----------L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~-~~~~~~~~L~ 613 (674)
+.. .+++ |+.|++.+|.....++ .+.+++|+.|++++|..+..++....... ......++|+
T Consensus 249 ~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 249 DVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp CCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred CHH---HCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 322 2344 4455555555444443 25688999999999887777653110000 0223344555
Q ss_pred cccccCcccccccccCCCCccccCCccEEEEecCCCcccc
Q 048755 614 SLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNV 653 (674)
Q Consensus 614 ~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l 653 (674)
.|+++++ .++.+ +++.+++|+.|+++++ ++.++
T Consensus 322 ~L~L~~N-~l~~l-----~l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 322 YLYLNNT-ELTEL-----DVSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp EEECTTC-CCSCC-----CCTTCTTCSEEECCSS-CCCBC
T ss_pred EEECCCC-ccccc-----ccccCCcCcEEECCCC-CCCCc
Confidence 5555443 23333 3677888898888874 46554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1e-22 Score=217.76 Aligned_cols=306 Identities=19% Similarity=0.253 Sum_probs=244.5
Q ss_pred ccccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEE
Q 048755 304 KDTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLS 383 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 383 (674)
...+.++++|.+.++.+..++....+++|+.|++++|.+..+++ +.++++|++|++++|.+..++ .++.+++|++|+
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLS 162 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEE
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh-hhccCCcccEee
Confidence 45678899999999999888886699999999999999888866 799999999999999998876 488999999999
Q ss_pred cCCcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccc
Q 048755 384 LDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGK 463 (674)
Q Consensus 384 l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 463 (674)
++ +.+.....+..+++|++|++++|.+..++. +..+++|++|++++|. +...++ ++.+++|++|++++|.+.
T Consensus 163 l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~--- 234 (466)
T 1o6v_A 163 FG-NQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQ-ISDITP--LGILTNLDELSLNGNQLK--- 234 (466)
T ss_dssp EE-ESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCC---
T ss_pred cC-CcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCc-cccccc--ccccCCCCEEECCCCCcc---
Confidence 96 445555568999999999999999888764 8899999999999985 444443 678999999999998762
Q ss_pred ccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCcee
Q 048755 464 VGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANIC 543 (674)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 543 (674)
.+..+..+++|+.|++++|....++. +..+++|+.|+++.+... ..+.+..++++..|++.++....
T Consensus 235 -----------~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 235 -----------DIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLED 301 (466)
T ss_dssp -----------CCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSC
T ss_pred -----------cchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCCCcccC
Confidence 12457788999999999998877765 788999999999876543 45556667788888888765554
Q ss_pred cchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccc
Q 048755 544 LNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNL 623 (674)
Q Consensus 544 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L 623 (674)
.++ ...+++|+.|++.+|.... ... ...+++|+.|++++| .++.++ ....+++|+.|++.+|. +
T Consensus 302 ~~~--~~~l~~L~~L~L~~n~l~~-~~~---~~~l~~L~~L~l~~n-~l~~~~--------~l~~l~~L~~L~l~~n~-l 365 (466)
T 1o6v_A 302 ISP--ISNLKNLTYLTLYFNNISD-ISP---VSSLTKLQRLFFYNN-KVSDVS--------SLANLTNINWLSAGHNQ-I 365 (466)
T ss_dssp CGG--GGGCTTCSEEECCSSCCSC-CGG---GGGCTTCCEEECCSS-CCCCCG--------GGTTCTTCCEEECCSSC-C
T ss_pred chh--hcCCCCCCEEECcCCcCCC-chh---hccCccCCEeECCCC-ccCCch--------hhccCCCCCEEeCCCCc-c
Confidence 443 4568999999999996433 332 367999999999998 555442 45678999999999985 5
Q ss_pred cccccCCCCccccCCccEEEEecCCCccccC
Q 048755 624 EEICCGPLTAESFSKLKTIRVEGCDKLKNVF 654 (674)
Q Consensus 624 ~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~ 654 (674)
..+. | +..+++|++|++.+|+ +..+|
T Consensus 366 ~~~~--~--~~~l~~L~~L~l~~n~-~~~~p 391 (466)
T 1o6v_A 366 SDLT--P--LANLTRITQLGLNDQA-WTNAP 391 (466)
T ss_dssp CBCG--G--GTTCTTCCEEECCCEE-EECCC
T ss_pred Cccc--h--hhcCCCCCEEeccCCc-ccCCc
Confidence 5442 2 6789999999999975 54544
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=7.1e-23 Score=234.86 Aligned_cols=317 Identities=20% Similarity=0.199 Sum_probs=184.1
Q ss_pred ccccceeEeeccccccCCCC-Cc-CCCCCcEEEcccC-CCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcE
Q 048755 306 TLKVCTAISLFNTNISELPQ-GF-ECPQLKYFHIRND-PSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQT 381 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~ 381 (674)
.+++++.|++++|.+..++. .+ .+++|++|++++| ....+++..|.++++|++|+|++|.+..+ |..++.+++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 56788888888888876543 33 8888888888887 44556677788888889999988888865 778888888899
Q ss_pred EEcCCcCCCC--ccc--ccCcCCccEEecCCCCchhch--HhhcCCCCCcEEeCCCCCCCCCCChhhhhCC--CCCCeEE
Q 048755 382 LSLDFCILGD--IAI--IGDLKKLEILTLRGSDMEKLV--EEMGELTQLRLLDLSYCFNLQVIPPNVISSL--SRLEELY 453 (674)
Q Consensus 382 L~l~~~~~~~--~~~--~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~ 453 (674)
|++++|.+.. +.. ++.+++|++|++++|.+..++ ..++++++|++|++++|......+.. ++.+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEE
Confidence 9888888765 443 788888888988888887553 56888888888888888544444433 6666 7888888
Q ss_pred eccCCCccccccccCCcccccchhhhcCCC------CccEEEeeeccC-CCCCccccc---ccCccEEEEEEcccccc--
Q 048755 454 IGQSPIMWGKVGGVDGERRNASLDELNNLS------KLTSLEILIQDE-KTLPRDLSF---FKMLQRYRISIGYDWWS-- 521 (674)
Q Consensus 454 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~-~~~~~~l~~---~~~L~~L~l~~~~~~~~-- 521 (674)
++.|.+... .+..++.++ +|+.|++++|.. ...+..+.. ..++..+.+..+.....
T Consensus 181 L~~n~l~~~------------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 181 LAANSLYSR------------VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp ECCSBSCCC------------CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred CCCCccccc------------cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 888876321 112222222 488999988752 233333321 12344444331100000
Q ss_pred --------cCCCCc--ccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccC
Q 048755 522 --------VGPWDG--ISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGN 591 (674)
Q Consensus 522 --------~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 591 (674)
...+.. ..++..|++.++......+.....+++|+.|+|.+|......+.. ..++++|++|++++| .
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~L~Ls~N-~ 325 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQVLNLSYN-L 325 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCEEEEESC-C
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--hcCCCCCCEEECCCC-C
Confidence 000111 124445555444433333333344555555555555432222211 244555555555555 2
Q ss_pred ceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecC
Q 048755 592 LVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGC 647 (674)
Q Consensus 592 l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C 647 (674)
++.+... ....+++|+.|+++++ .+..++ +..+..+++|++|++++|
T Consensus 326 l~~~~~~------~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~l~~L~~L~Ls~N 372 (844)
T 3j0a_A 326 LGELYSS------NFYGLPKVAYIDLQKN-HIAIIQ--DQTFKFLEKLQTLDLRDN 372 (844)
T ss_dssp CSCCCSC------SCSSCTTCCEEECCSC-CCCCCC--SSCSCSCCCCCEEEEETC
T ss_pred CCccCHH------HhcCCCCCCEEECCCC-CCCccC--hhhhcCCCCCCEEECCCC
Confidence 2222110 2334555555555554 233332 112344555555555553
No 31
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=5.8e-23 Score=214.53 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=228.8
Q ss_pred CCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCC
Q 048755 324 PQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKK 400 (674)
Q Consensus 324 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~ 400 (674)
+....+++++.|.++++.+..++...|.++++|++|++++|.+..++ ..++.+++|++|++++|.+.. +..++.+++
T Consensus 39 ~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 39 FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp CSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 34457799999999999999999998999999999999999999775 588999999999999998877 356889999
Q ss_pred ccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhh
Q 048755 401 LEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDEL 479 (674)
Q Consensus 401 L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 479 (674)
|++|++++|.++.+|.. +.++++|++|++++|. +..+++..++.+++|++|++++|.+.. ..+
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------~~~ 182 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH---------------VDL 182 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB---------------CCG
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc---------------ccc
Confidence 99999999999999976 5899999999999984 555655558999999999999987621 135
Q ss_pred cCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEE
Q 048755 480 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLT 559 (674)
Q Consensus 480 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 559 (674)
+.+++|+.|+++++....+ ...++|+.|+++.+... ..+. ..+++|+.|+
T Consensus 183 ~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~-----------------------~~~~---~~~~~L~~L~ 232 (390)
T 3o6n_A 183 SLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN-----------------------VVRG---PVNVELTILK 232 (390)
T ss_dssp GGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCCC-----------------------EEEC---CCCSSCCEEE
T ss_pred ccccccceeeccccccccc----CCCCcceEEECCCCeee-----------------------eccc---cccccccEEE
Confidence 6678999999998865543 34467888888654321 1111 1247899999
Q ss_pred ecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCc
Q 048755 560 LDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKL 639 (674)
Q Consensus 560 L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L 639 (674)
+.+|... ... ....+++|+.|+++++ .++.+... ....+++|+.|+++++ .++.+ +.....+++|
T Consensus 233 l~~n~l~-~~~---~l~~l~~L~~L~Ls~n-~l~~~~~~------~~~~l~~L~~L~L~~n-~l~~~---~~~~~~l~~L 297 (390)
T 3o6n_A 233 LQHNNLT-DTA---WLLNYPGLVEVDLSYN-ELEKIMYH------PFVKMQRLERLYISNN-RLVAL---NLYGQPIPTL 297 (390)
T ss_dssp CCSSCCC-CCG---GGGGCTTCSEEECCSS-CCCEEESG------GGTTCSSCCEEECCSS-CCCEE---ECSSSCCTTC
T ss_pred CCCCCCc-ccH---HHcCCCCccEEECCCC-cCCCcChh------HccccccCCEEECCCC-cCccc---CcccCCCCCC
Confidence 9998643 332 2377999999999998 55554322 3456899999999996 57777 4455789999
Q ss_pred cEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 640 KTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 640 ~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
++|++++| .+..+|+....+++|+.|+++++.
T Consensus 298 ~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 298 KVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp CEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred CEEECCCC-cceecCccccccCcCCEEECCCCc
Confidence 99999997 688998877779999999999874
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.90 E-value=2.4e-22 Score=230.49 Aligned_cols=345 Identities=15% Similarity=0.148 Sum_probs=231.8
Q ss_pred ccccccceeEeecccc-ccCC-CCCc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCC-CCcc--ccccc
Q 048755 304 KDTLKVCTAISLFNTN-ISEL-PQGF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLA-LPSS--LGLLQ 377 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~-~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~--~~~l~ 377 (674)
...+.+++.|+++++. ...+ |..+ .+++|++|++++|.+..+.+..|.++++|++|+|++|.+.. +|.. ++.++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 4567889999999984 4455 4444 89999999999999999988889999999999999999985 5554 89999
Q ss_pred CCcEEEcCCcCCCC--c-ccccCcCCccEEecCCCCchh-chHhhcCC--CCCcEEeCCCCCCCCCCChhhhhCCCC---
Q 048755 378 NLQTLSLDFCILGD--I-AIIGDLKKLEILTLRGSDMEK-LVEEMGEL--TQLRLLDLSYCFNLQVIPPNVISSLSR--- 448 (674)
Q Consensus 378 ~L~~L~l~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~~--- 448 (674)
+|++|++++|.+.. + ..++.+++|++|++++|.+.. .|..+..+ ++|+.|++++|......+.. ++.+++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~ 202 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFR 202 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCccc
Confidence 99999999998876 2 568999999999999998874 45566666 89999999999766656554 555554
Q ss_pred ---CCeEEeccCCCccccccccCCcccc------------------------cchhhhcC--CCCccEEEeeeccCCCC-
Q 048755 449 ---LEELYIGQSPIMWGKVGGVDGERRN------------------------ASLDELNN--LSKLTSLEILIQDEKTL- 498 (674)
Q Consensus 449 ---L~~L~l~~~~~~~~~~~~~~~~~~~------------------------~~~~~l~~--l~~L~~L~l~~~~~~~~- 498 (674)
|++|++++|.+.............. .....+.. .++|+.|+++++....+
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC
Confidence 9999999987643322211110000 00111222 26788888888776554
Q ss_pred CcccccccCccEEEEEEcccccccCC-CCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCC
Q 048755 499 PRDLSFFKMLQRYRISIGYDWWSVGP-WDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREV 577 (674)
Q Consensus 499 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 577 (674)
+..+..+++|+.|+++.+......|. +..++++..|++.++......+.....+++|+.|++.+|. +..++.. ....
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~ 360 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQ-TFKF 360 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSS-CSCS
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChh-hhcC
Confidence 45567888888888887654433232 3445567777776655444444444556778888887774 3333321 1356
Q ss_pred ccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCch
Q 048755 578 FPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLV 657 (674)
Q Consensus 578 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~ 657 (674)
+++|+.|++++| .++.+ ..+++|+.|.+.++ .+..++. ...+++.|+++++ .+..++...
T Consensus 361 l~~L~~L~Ls~N-~l~~i-----------~~~~~L~~L~l~~N-~l~~l~~------~~~~l~~L~ls~N-~l~~l~~~~ 420 (844)
T 3j0a_A 361 LEKLQTLDLRDN-ALTTI-----------HFIPSIPDIFLSGN-KLVTLPK------INLTANLIHLSEN-RLENLDILY 420 (844)
T ss_dssp CCCCCEEEEETC-CSCCC-----------SSCCSCSEEEEESC-CCCCCCC------CCTTCCEEECCSC-CCCSSTTHH
T ss_pred CCCCCEEECCCC-CCCcc-----------cCCCCcchhccCCC-Ccccccc------cccccceeecccC-ccccCchhh
Confidence 778888888776 23322 23677777777765 3444421 1345666666653 355543322
Q ss_pred h--hhhcccceecccc
Q 048755 658 I--ELTQLRTLELKNV 671 (674)
Q Consensus 658 ~--~l~~L~~L~l~~c 671 (674)
. .+++|+.|+++++
T Consensus 421 ~~~~l~~L~~L~Ls~N 436 (844)
T 3j0a_A 421 FLLRVPHLQILILNQN 436 (844)
T ss_dssp HHTTCTTCCEEEEESC
T ss_pred hhhcCCccceeeCCCC
Confidence 1 3677777776654
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=5.3e-22 Score=223.13 Aligned_cols=359 Identities=16% Similarity=0.121 Sum_probs=193.6
Q ss_pred cccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEE
Q 048755 307 LKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLS 383 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~ 383 (674)
.+++++|+++++.+..++.. + .+++|++|++++|.+..+++..|.++++|++|++++|.+..+|+ .++.+++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35677777777777766653 2 67777777777777777766667777777777777777777765 477777777777
Q ss_pred cCCcCCCC--cccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhh--CCCCCCeEEeccCC
Q 048755 384 LDFCILGD--IAIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVIS--SLSRLEELYIGQSP 458 (674)
Q Consensus 384 l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~~ 458 (674)
+++|.+.. +..++.+++|++|++++|.+...+ ..++++++|++|++++|. +...++..++ .+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence 77777665 245677777777777777766443 446677777777777763 3444443333 34667777777665
Q ss_pred CccccccccCCc---------------------------------------ccccchhhhcCC--CCccEEEeeeccCCC
Q 048755 459 IMWGKVGGVDGE---------------------------------------RRNASLDELNNL--SKLTSLEILIQDEKT 497 (674)
Q Consensus 459 ~~~~~~~~~~~~---------------------------------------~~~~~~~~l~~l--~~L~~L~l~~~~~~~ 497 (674)
+........... .....+..+..+ ++|+.|++++|....
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 532211100000 000111223333 236666666666544
Q ss_pred CC-cccccccCccEEEEEEcccccccCC-CCcccceeEEeecCCCce---------ecchhHHhhhccccEEEecCCCCc
Q 048755 498 LP-RDLSFFKMLQRYRISIGYDWWSVGP-WDGISRKFKLKLTNGANI---------CLNEGHIMQLKGIEDLTLDGLPDM 566 (674)
Q Consensus 498 ~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~---------~~~~~~~~~l~~L~~L~L~~~~~~ 566 (674)
++ ..+..+++|+.|+++.+......|. +..+.++..|++.++... .........+++|+.|++.+|...
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 43 3456666777777665543322222 233445555555432111 011112234566777777666433
Q ss_pred cccccCCCCCCccccceeeecccc-CceeeeecCC----------------C----CCCCCCCCCccccccccCcccccc
Q 048755 567 KNVLCEPGREVFPKLNRLQIEHNG-NLVRLVDTMD----------------C----TPAPTIAFPLLESLFLRDLRNLEE 625 (674)
Q Consensus 567 ~~~~~~~~~~~l~~L~~L~l~~~~-~l~~l~~~~~----------------~----~~~~~~~~~~L~~L~l~~c~~L~~ 625 (674)
...+.. ..++++|++|++++|. .+..++.... . .+.....+++|+.|+++++.--..
T Consensus 343 ~~~~~~--~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 343 GIKSNM--FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp CCCTTT--TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred CCChhH--hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 222211 2456667777766652 1122111000 0 000223345566666655432222
Q ss_pred cccCCCCccccCCccEEEEecCCCccccCCchhh-hhcccceecccc
Q 048755 626 ICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIE-LTQLRTLELKNV 671 (674)
Q Consensus 626 ~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~-l~~L~~L~l~~c 671 (674)
++ +..+..+++|++|++++|. +..+++.... +++|+.|+++++
T Consensus 421 ~~--~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n 464 (680)
T 1ziw_A 421 LT--GQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRV 464 (680)
T ss_dssp CC--SGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTS
T ss_pred cC--cccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccc
Confidence 21 1223455666666666654 4444333333 667777766654
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.5e-22 Score=216.22 Aligned_cols=326 Identities=15% Similarity=0.102 Sum_probs=227.1
Q ss_pred ccccccceeEeecccccc-CCCC-Cc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCC-CCcc--ccccc
Q 048755 304 KDTLKVCTAISLFNTNIS-ELPQ-GF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLA-LPSS--LGLLQ 377 (674)
Q Consensus 304 ~~~~~~~~~l~l~~~~~~-~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-lp~~--~~~l~ 377 (674)
...++++++|+++++.+. .++. .+ .+++|++|++++|.+..+.+..|.++++|++|++++|.+.. .|.. ++.++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 345788999999999875 4443 33 89999999999999999888888999999999999999985 3444 88999
Q ss_pred CCcEEEcCCcCCCC--ccc-ccCcCCccEEecCCCCchhc-hHhhcCC--CCCcEEeCCCCCCCCCCChhh--------h
Q 048755 378 NLQTLSLDFCILGD--IAI-IGDLKKLEILTLRGSDMEKL-VEEMGEL--TQLRLLDLSYCFNLQVIPPNV--------I 443 (674)
Q Consensus 378 ~L~~L~l~~~~~~~--~~~-~~~l~~L~~L~l~~~~~~~l-p~~~~~l--~~L~~L~l~~~~~~~~~~~~~--------l 443 (674)
+|++|++++|.+.. +.. +..+++|++|++++|.+..+ |..+..+ .+|++|++++|.. ..++... +
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITL-QDMNEYWLGWEKCGNP 208 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBC-TTCSTTCTTHHHHCCT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcc-cccchhhccccccccc
Confidence 99999999998877 333 78999999999999998855 4455555 6888999988843 3333211 2
Q ss_pred hCCCCCCeEEeccCCCccccccccCCcccccchhhh---cCCCCccEEEeeeccCCCC-----------Ccccc--cccC
Q 048755 444 SSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDEL---NNLSKLTSLEILIQDEKTL-----------PRDLS--FFKM 507 (674)
Q Consensus 444 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~-----------~~~l~--~~~~ 507 (674)
..+++|++|++++|.+.. ..+..+ -..++|+.|+++++..... +..+. ..++
T Consensus 209 ~~~~~L~~L~Ls~n~l~~------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKE------------SMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276 (455)
T ss_dssp TTTCEEEEEECTTSCCCH------------HHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred cccceeeeEecCCCcccc------------cchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence 356788899998887621 111222 2236677777665531110 00111 2256
Q ss_pred ccEEEEEEcccccccCC-CCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeee
Q 048755 508 LQRYRISIGYDWWSVGP-WDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQI 586 (674)
Q Consensus 508 L~~L~l~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l 586 (674)
|+.|+++.+......|. +..++++..|++.++.....++.....+++|+.|+|++|......+.. .+.+++|++|++
T Consensus 277 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L 354 (455)
T 3v47_A 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM--FENLDKLEVLDL 354 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG--GTTCTTCCEEEC
T ss_pred ceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH--hcCcccCCEEEC
Confidence 77777766554433333 234456777777666555555555566899999999998653332332 367899999999
Q ss_pred ccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccccC
Q 048755 587 EHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVF 654 (674)
Q Consensus 587 ~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~ 654 (674)
++| .++.+... ....+++|+.|+++++ .++.++ +..+..+++|++|++++|+--.+.|
T Consensus 355 s~N-~l~~~~~~------~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYN-HIRALGDQ------SFLGLPNLKELALDTN-QLKSVP--DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSS-CCCEECTT------TTTTCTTCCEEECCSS-CCSCCC--TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCC-cccccChh------hccccccccEEECCCC-ccccCC--HhHhccCCcccEEEccCCCcccCCC
Confidence 998 55555321 3456899999999986 577663 2234788999999999987555554
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=3.3e-22 Score=224.87 Aligned_cols=147 Identities=19% Similarity=0.219 Sum_probs=128.2
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~ 389 (674)
+.++.+++.+..+|..+. ++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 456777788888887664 8999999999999999998899999999999999999976 67789999999999999998
Q ss_pred CC-cc-cccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 390 GD-IA-IIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 390 ~~-~~-~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
.. +. .++.+++|++|++++|.+..+| ..++++++|++|++++|.... .++..++++++|++|++.+|.+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCC
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccc-cCchhhcccccCCEEEccCCcc
Confidence 88 33 5899999999999999999887 568999999999999995544 4444478999999999999876
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=2.2e-22 Score=221.85 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=228.9
Q ss_pred CCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCC
Q 048755 324 PQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKK 400 (674)
Q Consensus 324 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~ 400 (674)
+..+.+.+++.+.+++|.+..+|+..|.++++|++|++++|.+..+| ..++.+++|++|++++|.+.. +..++.+++
T Consensus 45 ~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 45 FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp CSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 33457789999999999999999999999999999999999999775 589999999999999999887 345789999
Q ss_pred ccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhh
Q 048755 401 LEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDEL 479 (674)
Q Consensus 401 L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 479 (674)
|++|++++|.+..+|.. ++++++|++|++++|. +..+++..++.+++|++|++++|.+.. ..+
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~---------------~~~ 188 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH---------------VDL 188 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSB---------------CCG
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCC---------------cCh
Confidence 99999999999999876 5899999999999994 555665558999999999999997621 135
Q ss_pred cCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEE
Q 048755 480 NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLT 559 (674)
Q Consensus 480 ~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~ 559 (674)
+.+++|+.|++++|....+ ...++|+.|+++.+... ..+.. .+++|+.|+
T Consensus 189 ~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~-----------------------~~~~~---~~~~L~~L~ 238 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSIN-----------------------VVRGP---VNVELTILK 238 (597)
T ss_dssp GGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCC-----------------------EEECS---CCSCCCEEE
T ss_pred hhhhhhhhhhcccCccccc----cCCchhheeeccCCccc-----------------------ccccc---cCCCCCEEE
Confidence 5678999999998865443 44567888888655321 11111 137899999
Q ss_pred ecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCc
Q 048755 560 LDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKL 639 (674)
Q Consensus 560 L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L 639 (674)
|.+|.... . .....+++|+.|++++| .++.+... ....+++|+.|+++++ .+..+ +.....+|+|
T Consensus 239 L~~n~l~~-~---~~l~~l~~L~~L~Ls~N-~l~~~~~~------~~~~l~~L~~L~Ls~N-~l~~l---~~~~~~l~~L 303 (597)
T 3oja_B 239 LQHNNLTD-T---AWLLNYPGLVEVDLSYN-ELEKIMYH------PFVKMQRLERLYISNN-RLVAL---NLYGQPIPTL 303 (597)
T ss_dssp CCSSCCCC-C---GGGGGCTTCSEEECCSS-CCCEEESG------GGTTCSSCCEEECTTS-CCCEE---ECSSSCCTTC
T ss_pred CCCCCCCC-C---hhhccCCCCCEEECCCC-ccCCCCHH------HhcCccCCCEEECCCC-CCCCC---CcccccCCCC
Confidence 99986443 2 22367999999999998 45554322 3457899999999996 57777 5556779999
Q ss_pred cEEEEecCCCccccCCchhhhhcccceeccccc
Q 048755 640 KTIRVEGCDKLKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 640 ~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
++|++++| .+..+|+....+++|+.|+++++.
T Consensus 304 ~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 304 KVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS 335 (597)
T ss_dssp CEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC
T ss_pred cEEECCCC-CCCccCcccccCCCCCEEECCCCC
Confidence 99999997 477898887779999999999874
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=5.4e-22 Score=213.14 Aligned_cols=294 Identities=20% Similarity=0.180 Sum_probs=233.0
Q ss_pred cccccceeEeeccccccCCCC-Cc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcE
Q 048755 305 DTLKVCTAISLFNTNISELPQ-GF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQT 381 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~ 381 (674)
.....++.|+++++.+..++. .+ .+++|+.|++++|.+..+.+..|.++++|++|+|++|.+..+|. .+..+++|++
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 345688999999999987754 33 89999999999999999988889999999999999999998875 4789999999
Q ss_pred EEcCCcCCCC--cccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCC
Q 048755 382 LSLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSP 458 (674)
Q Consensus 382 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 458 (674)
|++++|.+.. +..+..+++|++|++++|.+..++ ..+..+++|++|++++| .+..++...+..+++|+.|++.+|.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc
Confidence 9999998877 467889999999999999998664 57889999999999998 5677787778999999999999987
Q ss_pred CccccccccCCcccccchhhhcCCCCccEEEeeecc-CCCCCcccccccCccEEEEEEcccccccCC--CCcccceeEEe
Q 048755 459 IMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKMLQRYRISIGYDWWSVGP--WDGISRKFKLK 535 (674)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~l~ 535 (674)
+. ......+..+++|+.|+++++. ...+|.......+|+.|+++.+... .+|. +..++++..|+
T Consensus 188 i~------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 254 (477)
T 2id5_A 188 IN------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLN 254 (477)
T ss_dssp CC------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEE
T ss_pred Cc------------EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeE
Confidence 62 2223456788999999999865 5566666666668999999876533 4442 34556888888
Q ss_pred ecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccc
Q 048755 536 LTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESL 615 (674)
Q Consensus 536 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L 615 (674)
+.++.....+......+++|+.|+|.+|......+.. ..++++|+.|+++++ .++.++.. ....+++|+.|
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~------~~~~l~~L~~L 325 (477)
T 2id5_A 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA--FRGLNYLRVLNVSGN-QLTTLEES------VFHSVGNLETL 325 (477)
T ss_dssp CCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT--BTTCTTCCEEECCSS-CCSCCCGG------GBSCGGGCCEE
T ss_pred CCCCcCCccChhhccccccCCEEECCCCccceECHHH--hcCcccCCEEECCCC-cCceeCHh------HcCCCcccCEE
Confidence 8877666666666667899999999988644433332 367899999999988 56555321 23457899999
Q ss_pred cccCcc
Q 048755 616 FLRDLR 621 (674)
Q Consensus 616 ~l~~c~ 621 (674)
++.+.+
T Consensus 326 ~l~~N~ 331 (477)
T 2id5_A 326 ILDSNP 331 (477)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 997643
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=2.5e-22 Score=218.37 Aligned_cols=345 Identities=18% Similarity=0.150 Sum_probs=234.2
Q ss_pred ccceeEeeccccccCCCC-C-cCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcC
Q 048755 308 KVCTAISLFNTNISELPQ-G-FECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLD 385 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 385 (674)
+++++|+++++.+..++. . ..+++|++|++++|.+..+.+..|.++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 789999999999988874 2 3899999999999999998888889999999999999999988877 89999999999
Q ss_pred CcCCCC---cccccCcCCccEEecCCCCchhchHhhcCCCCC--cEEeCCCCCC--CCCCChh-----------------
Q 048755 386 FCILGD---IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQL--RLLDLSYCFN--LQVIPPN----------------- 441 (674)
Q Consensus 386 ~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L--~~L~l~~~~~--~~~~~~~----------------- 441 (674)
+|.+.. |..++.+++|++|++++|.+.. ..+..+++| ++|++++|.. ....|..
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 998865 4789999999999999998875 345667777 8888887754 2222221
Q ss_pred --------h------------------------------hhCCCCCCeEEeccCCCcccc------------ccc--cCC
Q 048755 442 --------V------------------------------ISSLSRLEELYIGQSPIMWGK------------VGG--VDG 469 (674)
Q Consensus 442 --------~------------------------------l~~l~~L~~L~l~~~~~~~~~------------~~~--~~~ 469 (674)
. ++.+++|+.|++.++.+.... ... ...
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 0 122222233322222110000 000 000
Q ss_pred -cccccchhhh-----cCCCCccEEEeeeccCCCCCc--------------------------ccccccCccEEEEEEcc
Q 048755 470 -ERRNASLDEL-----NNLSKLTSLEILIQDEKTLPR--------------------------DLSFFKMLQRYRISIGY 517 (674)
Q Consensus 470 -~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~--------------------------~l~~~~~L~~L~l~~~~ 517 (674)
......+..+ +++++|+.+++.++.. .+|. ....+++|+.|+++.+.
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~ 335 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC
T ss_pred ccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCc
Confidence 0000112222 3444444444444333 2220 11567889999998776
Q ss_pred cccccCC-CCcccceeEEeecCCCceecc--hhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCcee
Q 048755 518 DWWSVGP-WDGISRKFKLKLTNGANICLN--EGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVR 594 (674)
Q Consensus 518 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 594 (674)
.....|. +..++++..|.+.++.....+ +.....+++|+.|++++|.....++.. ....+++|+.|++++|. ++.
T Consensus 336 l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-~~~~l~~L~~L~Ls~N~-l~~ 413 (520)
T 2z7x_B 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-DCSWTKSLLSLNMSSNI-LTD 413 (520)
T ss_dssp CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-SCCCCTTCCEEECCSSC-CCG
T ss_pred cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-hhccCccCCEEECcCCC-CCc
Confidence 5543444 345668888888866655422 234556899999999998755435432 23678999999999983 322
Q ss_pred eeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCc-hhhhhcccceeccccc
Q 048755 595 LVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPL-VIELTQLRTLELKNVF 672 (674)
Q Consensus 595 l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~-~~~l~~L~~L~l~~c~ 672 (674)
.. .....++|+.|+++++ .++.+ |..+..+++|++|++++| +++.+|+. ...+++|+.|++++.+
T Consensus 414 ~~--------~~~l~~~L~~L~Ls~N-~l~~i---p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 414 TI--------FRCLPPRIKVLDLHSN-KIKSI---PKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp GG--------GGSCCTTCCEEECCSS-CCCCC---CGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ch--------hhhhcccCCEEECCCC-ccccc---chhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 10 1111279999999998 57777 555678999999999997 68899887 4449999999998864
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=1.6e-21 Score=217.72 Aligned_cols=353 Identities=17% Similarity=0.163 Sum_probs=230.8
Q ss_pred cccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcE
Q 048755 305 DTLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQT 381 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~ 381 (674)
..+..++.|++++|.+..+|+. + .+++|++|++++|.+..+++..|.++++|++|+|++|.++.+|+ .+..+++|++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 3456789999999999988764 3 89999999999999999999889999999999999999998875 5789999999
Q ss_pred EEcCCcCCCCc--ccccCcCCccEEecCCCCchh--chHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCC----eEE
Q 048755 382 LSLDFCILGDI--AIIGDLKKLEILTLRGSDMEK--LVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLE----ELY 453 (674)
Q Consensus 382 L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~ 453 (674)
|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|++|++++|. +..+++..+..+.+++ .++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhh
Confidence 99999988873 458899999999999998874 56778899999999998874 3333322222221111 111
Q ss_pred eccCCCcccc--------------------------------------------------c-------------------
Q 048755 454 IGQSPIMWGK--------------------------------------------------V------------------- 464 (674)
Q Consensus 454 l~~~~~~~~~--------------------------------------------------~------------------- 464 (674)
+..+.+.... .
T Consensus 208 ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 208 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 1111000000 0
Q ss_pred ---------c-------------------------ccCC--c-----------------------------ccccchhhh
Q 048755 465 ---------G-------------------------GVDG--E-----------------------------RRNASLDEL 479 (674)
Q Consensus 465 ---------~-------------------------~~~~--~-----------------------------~~~~~~~~l 479 (674)
. .... . .........
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~ 367 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 367 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC
T ss_pred hhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc
Confidence 0 0000 0 000000111
Q ss_pred cCCCCccEEEeeeccCC---CCCcc-----------------------cccccCccEEEEEEccccccc--CCCCcccce
Q 048755 480 NNLSKLTSLEILIQDEK---TLPRD-----------------------LSFFKMLQRYRISIGYDWWSV--GPWDGISRK 531 (674)
Q Consensus 480 ~~l~~L~~L~l~~~~~~---~~~~~-----------------------l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~ 531 (674)
..+++|+.|+++.+... ..+.. +..+++|+.+++..+...... ..+..+.++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccc
Confidence 23567888888766532 12222 233344444444322211111 112233355
Q ss_pred eEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCc
Q 048755 532 FKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPL 611 (674)
Q Consensus 532 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~ 611 (674)
..++..........+.....+++|+.|++.+|......... ....+++|+.|++++| +++.++.. ....+++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N-~L~~l~~~------~f~~l~~ 519 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQC-QLEQLSPT------AFNSLSS 519 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTS-CCCEECTT------TTTTCTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCC-ccCCcChH------HHcCCCC
Confidence 66666655555555566666789999999988755544322 2367899999999988 67766432 3456889
Q ss_pred cccccccCcccccccccCCCCccccCCccEEEEecCCCccccCCchhh-h-hcccceeccc
Q 048755 612 LESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIE-L-TQLRTLELKN 670 (674)
Q Consensus 612 L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~-l-~~L~~L~l~~ 670 (674)
|+.|+|+++ +++.++ +..+..+++|++|+++++ ++..+++.... + ++|+.|++++
T Consensus 520 L~~L~Ls~N-~l~~l~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 520 LQVLNMSHN-NFFSLD--TFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CCEEECTTS-CCCBCC--CGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTT
T ss_pred CCEEECCCC-cCCCCC--hhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeC
Confidence 999999986 566663 334678899999999985 57777665544 5 6899999975
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.9e-21 Score=206.18 Aligned_cols=303 Identities=18% Similarity=0.155 Sum_probs=229.5
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecC
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLR 407 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 407 (674)
.+++|+.|++++|.+..++ .+..+++|++|++++|.+..+| ++.+++|++|++++|.++.++ ++.+++|++|+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD 114 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECC
T ss_pred HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEECC
Confidence 6789999999999988876 3789999999999999999886 889999999999999988864 8899999999999
Q ss_pred CCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccE
Q 048755 408 GSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTS 487 (674)
Q Consensus 408 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 487 (674)
+|.++.+| ++.+++|++|++++|. ++.++ ++.+++|++|++++|... ... .++.+++|+.
T Consensus 115 ~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~------------~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 115 TNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKI------------TKL--DVTPQTQLTT 174 (457)
T ss_dssp SSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCC------------CCC--CCTTCTTCCE
T ss_pred CCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcc------------ccc--ccccCCcCCE
Confidence 99999886 8899999999999984 44453 788999999999998531 111 4678899999
Q ss_pred EEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCcc
Q 048755 488 LEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMK 567 (674)
Q Consensus 488 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 567 (674)
|++++|....+| +..+++|+.|+++.+... .+ ++..++++..|++.++.....+ ...+++|+.|++.+|....
T Consensus 175 L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~-~~-~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 175 LDCSFNKITELD--VSQNKLLNRLNCDTNNIT-KL-DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp EECCSSCCCCCC--CTTCTTCCEEECCSSCCS-CC-CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC
T ss_pred EECCCCccceec--cccCCCCCEEECcCCcCC-ee-ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCC
Confidence 999999988887 788999999999866533 22 3556678888888876555544 4568999999999986433
Q ss_pred ccccCCCCCCccccceeeeccccCceeeeecCCCC--CCCCCCCCccccccccCcccccccccC-----CCCccccCCcc
Q 048755 568 NVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCT--PAPTIAFPLLESLFLRDLRNLEEICCG-----PLTAESFSKLK 640 (674)
Q Consensus 568 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~--~~~~~~~~~L~~L~l~~c~~L~~~~~~-----~~~~~~l~~L~ 640 (674)
.+ .+.+++|+.|.+.++ +++.+.-..-.+ ....+.+++|+.|++++|+.+..++.. ...+..+++|+
T Consensus 248 -~~----~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 248 -LD----VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp -CC----CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred -cC----HHHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 32 245676665555433 233221110000 002356799999999999877776431 12345668888
Q ss_pred EEEEecCCCccccCCchhhhhcccceecccc
Q 048755 641 TIRVEGCDKLKNVFPLVIELTQLRTLELKNV 671 (674)
Q Consensus 641 ~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c 671 (674)
+|++++| +++.++ ...+++|+.|++++.
T Consensus 322 ~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 322 YLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp EEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred EEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 8888874 577763 445899999998764
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=5.4e-21 Score=209.55 Aligned_cols=128 Identities=17% Similarity=0.256 Sum_probs=108.0
Q ss_pred cCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCCccE
Q 048755 327 FECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEI 403 (674)
Q Consensus 327 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~ 403 (674)
..|...++++++++....+|...+ ++|++|++++|.+..++ ..++.+++|++|++++|.++. +..+..+++|++
T Consensus 28 ~~~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp -----CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred cccCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 355666899999999998887653 89999999999999886 689999999999999999887 467899999999
Q ss_pred EecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCC-hhhhhCCCCCCeEEeccCCCc
Q 048755 404 LTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIP-PNVISSLSRLEELYIGQSPIM 460 (674)
Q Consensus 404 L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~ 460 (674)
|++++|.++.+|.. .+++|++|++++|. +..++ +..++++++|++|++++|.+.
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCccc
Confidence 99999999999976 89999999999995 45544 234899999999999998873
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=7.7e-21 Score=193.56 Aligned_cols=190 Identities=17% Similarity=0.230 Sum_probs=116.8
Q ss_pred cceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCc
Q 048755 309 VCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFC 387 (674)
Q Consensus 309 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~ 387 (674)
+++.+.++++.+..+|..+. ++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 55667777777777776543 5777777777777777766677777777777777777765 666777777777777777
Q ss_pred CCCC-cccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCC-CCChhhhhCCCCCCeEEeccCCCccccc
Q 048755 388 ILGD-IAIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQ-VIPPNVISSLSRLEELYIGQSPIMWGKV 464 (674)
Q Consensus 388 ~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 464 (674)
.++. +..+. ++|++|++++|.+..++. .+.++++|++|++++|.... ......++.+++|++|++.+|.+...
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-- 186 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI-- 186 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC--
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC--
Confidence 6665 33332 677777777777665553 46667777777777664321 12222356666777777666654211
Q ss_pred cccCCcccccchhhhcCCCCccEEEeeeccCCCC-CcccccccCccEEEEEEc
Q 048755 465 GGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIG 516 (674)
Q Consensus 465 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~ 516 (674)
+..+ .++|+.|++++|....+ |..+..+++|+.|+++.+
T Consensus 187 -----------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 187 -----------PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp -----------CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred -----------Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 1111 14566666666655444 344555556666655433
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.1e-21 Score=196.56 Aligned_cols=121 Identities=13% Similarity=0.242 Sum_probs=64.0
Q ss_pred cceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCc
Q 048755 309 VCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFC 387 (674)
Q Consensus 309 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~ 387 (674)
.++.+.++++.+..+|..+ .++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 3455555555555555443 24555555555555555554455555555555555555544 444555555555555555
Q ss_pred CCCC-cccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCC
Q 048755 388 ILGD-IAIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYC 432 (674)
Q Consensus 388 ~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~ 432 (674)
.+.. +..+. ++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSC
T ss_pred cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCC
Confidence 5544 22222 455555555555554443 2455555555555555
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.1e-20 Score=192.38 Aligned_cols=290 Identities=16% Similarity=0.199 Sum_probs=214.5
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEcCCcCCCC--cccccCcCCccEEec
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTL 406 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 406 (674)
.+++.++++++....+|... .+.|++|++++|.+..++. .++.+++|++|++++|.+.. +..++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 47899999998888887654 3689999999999998865 78999999999999998877 567899999999999
Q ss_pred CCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCcc
Q 048755 407 RGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLT 486 (674)
Q Consensus 407 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 486 (674)
++|.++.+|..+. ++|++|++++| .+..++...++.+++|++|++++|.+.. .......++.+++|+
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKS----------SGIENGAFQGMKKLS 174 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCG----------GGBCTTGGGGCTTCC
T ss_pred CCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCc----------cCcChhhccCCCCcC
Confidence 9999999987654 79999999998 5667777768999999999999987621 113346678899999
Q ss_pred EEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCc
Q 048755 487 SLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDM 566 (674)
Q Consensus 487 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 566 (674)
.|+++++....+|..+. ++|+.|+++.+... ...+.....+++|+.|++.+|...
T Consensus 175 ~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 175 YIRIADTNITTIPQGLP--PSLTELHLDGNKIT-----------------------KVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp EEECCSSCCCSCCSSCC--TTCSEEECTTSCCC-----------------------EECTGGGTTCTTCCEEECCSSCCC
T ss_pred EEECCCCccccCCcccc--ccCCEEECCCCcCC-----------------------ccCHHHhcCCCCCCEEECCCCcCc
Confidence 99999999888887664 78888888654321 122233445788999999887643
Q ss_pred cccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCC----ccccCCccEE
Q 048755 567 KNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLT----AESFSKLKTI 642 (674)
Q Consensus 567 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~----~~~l~~L~~L 642 (674)
...+.. ...+++|+.|++++| .++.++. ....+++|+.|+++++ .++.++...+. ....++|+.|
T Consensus 230 ~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~-------~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l 298 (330)
T 1xku_A 230 AVDNGS--LANTPHLRELHLNNN-KLVKVPG-------GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGV 298 (330)
T ss_dssp EECTTT--GGGSTTCCEEECCSS-CCSSCCT-------TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEE
T ss_pred eeChhh--ccCCCCCCEEECCCC-cCccCCh-------hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccce
Confidence 322212 356888999999887 4554432 3456788999999886 36655322111 1235889999
Q ss_pred EEecCCCcc-ccCCchhh-hhcccceecccc
Q 048755 643 RVEGCDKLK-NVFPLVIE-LTQLRTLELKNV 671 (674)
Q Consensus 643 ~i~~C~~L~-~l~~~~~~-l~~L~~L~l~~c 671 (674)
++.++|--. .+++.... +++|+.+++++.
T Consensus 299 ~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 299 SLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred EeecCcccccccCccccccccceeEEEeccc
Confidence 999877432 34444333 889999998875
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=3.2e-21 Score=195.47 Aligned_cols=229 Identities=24% Similarity=0.272 Sum_probs=158.5
Q ss_pred CCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCC
Q 048755 353 MTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSY 431 (674)
Q Consensus 353 ~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 431 (674)
..++++|+++++.+..+|..++.+++|++|++++|.+.. |..++.+++|++|++++|.+..+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 567888888888888888888888888888888887776 5668888888888888888888888888999999999998
Q ss_pred CCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEE
Q 048755 432 CFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRY 511 (674)
Q Consensus 432 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L 511 (674)
|...+.+|.. ++.. . ....++.+++|+.|++++|....+|..+..+++|+.|
T Consensus 160 n~~~~~~p~~-~~~~------~---------------------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 160 CPELTELPEP-LAST------D---------------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211 (328)
T ss_dssp ETTCCCCCSC-SEEE------C----------------------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEE
T ss_pred CCCccccChh-Hhhc------c---------------------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEE
Confidence 8777777654 2220 0 1123456777888888887777777777777788888
Q ss_pred EEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccC
Q 048755 512 RISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGN 591 (674)
Q Consensus 512 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 591 (674)
+++.+... ..+.. ...+++|+.|+|.+|.....++..+ +++++|+.|++++|..
T Consensus 212 ~L~~N~l~-----------------------~l~~~-l~~l~~L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~~ 265 (328)
T 4fcg_A 212 KIRNSPLS-----------------------ALGPA-IHHLPKLEELDLRGCTALRNYPPIF--GGRAPLKRLILKDCSN 265 (328)
T ss_dssp EEESSCCC-----------------------CCCGG-GGGCTTCCEEECTTCTTCCBCCCCT--TCCCCCCEEECTTCTT
T ss_pred EccCCCCC-----------------------cCchh-hccCCCCCEEECcCCcchhhhHHHh--cCCCCCCEEECCCCCc
Confidence 77655321 11121 2346777777777776666555433 5677777777777755
Q ss_pred ceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEe
Q 048755 592 LVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVE 645 (674)
Q Consensus 592 l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~ 645 (674)
+..++. ....+++|+.|+|++|+.+..+ |..++.+++|+.+.+.
T Consensus 266 ~~~~p~-------~~~~l~~L~~L~L~~n~~~~~i---P~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 266 LLTLPL-------DIHRLTQLEKLDLRGCVNLSRL---PSLIAQLPANCIILVP 309 (328)
T ss_dssp CCBCCT-------TGGGCTTCCEEECTTCTTCCCC---CGGGGGSCTTCEEECC
T ss_pred hhhcch-------hhhcCCCCCEEeCCCCCchhhc---cHHHhhccCceEEeCC
Confidence 544421 2345666666666666666666 5556666666666554
No 46
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.6e-20 Score=209.70 Aligned_cols=149 Identities=20% Similarity=0.294 Sum_probs=126.0
Q ss_pred eEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEcCCcCCC
Q 048755 312 AISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSLDFCILG 390 (674)
Q Consensus 312 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~ 390 (674)
+.+-++.++..+|..+. ++++.|++++|.+..+++..|.++++|++|+|++|.++.+|+ .|..+++|++|++++|.++
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence 34445556778887652 589999999999999999999999999999999999998854 6899999999999999998
Q ss_pred C-c-ccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcc
Q 048755 391 D-I-AIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMW 461 (674)
Q Consensus 391 ~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 461 (674)
. + ..+..+++|++|++++|+++.+|. .++++++|++|++++|.......+..++.+++|++|++++|.+..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 8 3 457899999999999999999886 489999999999999954332223347899999999999997743
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=3.7e-21 Score=193.89 Aligned_cols=247 Identities=13% Similarity=0.103 Sum_probs=132.0
Q ss_pred CCcEEEcccCCCcc--cCchhhcCCCcceEEEecC-cccC-CCCcccccccCCcEEEcCCcCCCC--cccccCcCCccEE
Q 048755 331 QLKYFHIRNDPSLR--ISDNIFTGMTELRVLDFTE-MHLL-ALPSSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEIL 404 (674)
Q Consensus 331 ~L~~L~l~~~~~~~--~~~~~~~~~~~Lr~L~l~~-~~~~-~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L 404 (674)
+++.|++++|.+.. ..+..+.++++|++|++++ +.+. .+|..++.+++|++|++++|.+.. |..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 44555555554443 2223345555666666653 4444 445555556666666666555542 4445555666666
Q ss_pred ecCCCCch-hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCC-CCCeEEeccCCCccccccccCCcccccchhhhcCC
Q 048755 405 TLRGSDME-KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLS-RLEELYIGQSPIMWGKVGGVDGERRNASLDELNNL 482 (674)
Q Consensus 405 ~l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l 482 (674)
++++|.+. .+|..+..+++|++|++++|.....+|.. ++.++ +|++|++++|.+. ...+..++.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~------------~~~~~~~~~l 197 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLT------------GKIPPTFANL 197 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEE------------EECCGGGGGC
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeee------------ccCChHHhCC
Confidence 66665555 45555555666666666655433344443 45555 5666666555441 1223344444
Q ss_pred CCccEEEeeeccCC-CCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEec
Q 048755 483 SKLTSLEILIQDEK-TLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLD 561 (674)
Q Consensus 483 ~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~ 561 (674)
+ |+.|++++|... ..|..+..+++|+.|+++.+..... ++. ...+++|+.|++.
T Consensus 198 ~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------------------~~~-~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 198 N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD-----------------------LGK-VGLSKNLNGLDLR 252 (313)
T ss_dssp C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB-----------------------GGG-CCCCTTCCEEECC
T ss_pred c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee-----------------------cCc-ccccCCCCEEECc
Confidence 4 666666655533 3344455566666666654322100 111 1235677777777
Q ss_pred CCCCccccccCCCCCCccccceeeeccccCce-eeeecCCCCCCCCCCCCccccccccCccccccc
Q 048755 562 GLPDMKNVLCEPGREVFPKLNRLQIEHNGNLV-RLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEI 626 (674)
Q Consensus 562 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 626 (674)
+|.....++..+ ..+++|+.|++++| .++ .++ ....+++|+.|++.+.+.+...
T Consensus 253 ~N~l~~~~p~~l--~~l~~L~~L~Ls~N-~l~~~ip--------~~~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 253 NNRIYGTLPQGL--TQLKFLHSLNVSFN-NLCGEIP--------QGGNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp SSCCEECCCGGG--GGCTTCCEEECCSS-EEEEECC--------CSTTGGGSCGGGTCSSSEEEST
T ss_pred CCcccCcCChHH--hcCcCCCEEECcCC-cccccCC--------CCccccccChHHhcCCCCccCC
Confidence 776544444332 56778888888777 333 221 2356778888888877766543
No 48
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=2e-19 Score=190.39 Aligned_cols=279 Identities=22% Similarity=0.192 Sum_probs=196.1
Q ss_pred cccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCC
Q 048755 307 LKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDF 386 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 386 (674)
+++++.|+++++.+..+|.. +++|+.|++++|....++.. .++|++|++++|.+..+| .++.+++|++|++++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 46889999999998888864 48899999999887765532 268999999999999888 589999999999999
Q ss_pred cCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccc
Q 048755 387 CILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGG 466 (674)
Q Consensus 387 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 466 (674)
|.++.++.. ..+|++|++++|.++.+| .++++++|++|++++|. +..+|.. .++|++|++++|.+.
T Consensus 163 N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~----~~~L~~L~l~~n~l~------ 228 (454)
T 1jl5_A 163 NSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDL----PLSLESIVAGNNILE------ 228 (454)
T ss_dssp SCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCC----CTTCCEEECCSSCCS------
T ss_pred CcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCC----cCcccEEECcCCcCC------
Confidence 988774322 358999999999998888 58899999999999984 4455542 358999999988762
Q ss_pred cCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecch
Q 048755 467 VDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNE 546 (674)
Q Consensus 467 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 546 (674)
..+ .++.+++|+.|++++|....+|.. +++|+.|+++.+... .+|.+. .++..|++.++.....+.
T Consensus 229 -------~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~-~l~~~~--~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 229 -------ELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLT-DLPELP--QSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp -------SCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCS-CCCCCC--TTCCEEECCSSCCSEESC
T ss_pred -------ccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCccc-ccCccc--CcCCEEECcCCccCcccC
Confidence 122 377889999999999988888764 478999999866533 344432 466777776554333221
Q ss_pred hHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCccccccc
Q 048755 547 GHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEI 626 (674)
Q Consensus 547 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 626 (674)
..++|+.|++.+|... .++ ...++|+.|+++++ .++.++ ..+++|+.|+++++ .++.+
T Consensus 295 ----~~~~L~~L~l~~N~l~-~i~-----~~~~~L~~L~Ls~N-~l~~lp----------~~~~~L~~L~L~~N-~l~~l 352 (454)
T 1jl5_A 295 ----LPPNLYYLNASSNEIR-SLC-----DLPPSLEELNVSNN-KLIELP----------ALPPRLERLIASFN-HLAEV 352 (454)
T ss_dssp ----CCTTCCEEECCSSCCS-EEC-----CCCTTCCEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSCC
T ss_pred ----cCCcCCEEECcCCcCC-ccc-----CCcCcCCEEECCCC-cccccc----------ccCCcCCEEECCCC-ccccc
Confidence 1367788888776432 221 11247777777765 333321 12466777777665 35555
Q ss_pred ccCCCCccccCCccEEEEecCC
Q 048755 627 CCGPLTAESFSKLKTIRVEGCD 648 (674)
Q Consensus 627 ~~~~~~~~~l~~L~~L~i~~C~ 648 (674)
|. .+++|++|++++|.
T Consensus 353 ---p~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 353 ---PE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp ---CC---CCTTCCEEECCSSC
T ss_pred ---cc---hhhhccEEECCCCC
Confidence 22 35667777776654
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=1.8e-19 Score=190.67 Aligned_cols=305 Identities=17% Similarity=0.184 Sum_probs=209.4
Q ss_pred ccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcC
Q 048755 306 TLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLD 385 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 385 (674)
...+++.|+++++.+..++... ++|++|++++|.+..++ . |.++++|++|++++|.+..+|..+ .+|++|+++
T Consensus 109 ~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~-~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 109 LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-E-LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-c-cCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence 3478999999999998877643 79999999999998877 3 899999999999999999888654 599999999
Q ss_pred CcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccc
Q 048755 386 FCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVG 465 (674)
Q Consensus 386 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 465 (674)
+|.++.++.++.+++|++|++++|.++.+|.. .++|++|++++| .+..+|. ++.+++|++|++++|.+...
T Consensus 182 ~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l--- 252 (454)
T 1jl5_A 182 NNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTL--- 252 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSC---
T ss_pred CCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcc---
Confidence 99998866899999999999999999888753 368999999999 4557774 88999999999999876311
Q ss_pred ccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecc
Q 048755 466 GVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLN 545 (674)
Q Consensus 466 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 545 (674)
+. .+++|+.|++++|....+|.. +++|+.|+++.+... .+|.+. .++..|++.++.....+
T Consensus 253 ----------~~---~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~-~l~~~~--~~L~~L~l~~N~l~~i~ 313 (454)
T 1jl5_A 253 ----------PD---LPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFS-GLSELP--PNLYYLNASSNEIRSLC 313 (454)
T ss_dssp ----------CS---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-EESCCC--TTCCEEECCSSCCSEEC
T ss_pred ----------cc---cccccCEEECCCCcccccCcc---cCcCCEEECcCCccC-cccCcC--CcCCEEECcCCcCCccc
Confidence 11 237899999999988888765 378999999876532 333332 36667777655443322
Q ss_pred hhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccc
Q 048755 546 EGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEE 625 (674)
Q Consensus 546 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 625 (674)
..+++|+.|++.+|.. ..++ ..+++|+.|++++| .++.++ . .+++|+.|+++++. +..
T Consensus 314 ----~~~~~L~~L~Ls~N~l-~~lp-----~~~~~L~~L~L~~N-~l~~lp---------~-~l~~L~~L~L~~N~-l~~ 371 (454)
T 1jl5_A 314 ----DLPPSLEELNVSNNKL-IELP-----ALPPRLERLIASFN-HLAEVP---------E-LPQNLKQLHVEYNP-LRE 371 (454)
T ss_dssp ----CCCTTCCEEECCSSCC-SCCC-----CCCTTCCEEECCSS-CCSCCC---------C-CCTTCCEEECCSSC-CSS
T ss_pred ----CCcCcCCEEECCCCcc-cccc-----ccCCcCCEEECCCC-cccccc---------c-hhhhccEEECCCCC-CCc
Confidence 1236899999998763 3333 23799999999988 455442 2 47899999999863 554
Q ss_pred cccCCCCcccc-------------CCccEEEEecCCCccccCCchhhhhcccceecccc
Q 048755 626 ICCGPLTAESF-------------SKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKNV 671 (674)
Q Consensus 626 ~~~~~~~~~~l-------------~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~c 671 (674)
++..|..++.+ ++|++|++++++ +..++.. .++|+.|.+.+|
T Consensus 372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~i---P~sl~~L~~~~~ 426 (454)
T 1jl5_A 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPDI---PESVEDLRMNSE 426 (454)
T ss_dssp CCCCCTTCCEEECCC--------------------------------------------
T ss_pred CCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCccccc---hhhHhheeCcCc
Confidence 43335566666 899999999865 5543221 245666666665
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=3.4e-20 Score=187.93 Aligned_cols=230 Identities=22% Similarity=0.255 Sum_probs=159.8
Q ss_pred ccCCcEEEcCCcCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEe
Q 048755 376 LQNLQTLSLDFCILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYI 454 (674)
Q Consensus 376 l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 454 (674)
..++++|+++++.+.. |..++.+++|++|++++|.+..+|..++++++|++|++++|. +..+|.. ++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~-l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPAS-IASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGG-GGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHH-HhcCcCCCEEEC
Confidence 3567777777776665 455666777777777777666666666666667777666663 3355544 566666666666
Q ss_pred ccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEE
Q 048755 455 GQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKL 534 (674)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 534 (674)
++|.... ..+..++ .. .++..+..+++|+.|+++.+...
T Consensus 158 ~~n~~~~------------~~p~~~~------~~--------~~~~~~~~l~~L~~L~L~~n~l~--------------- 196 (328)
T 4fcg_A 158 RACPELT------------ELPEPLA------ST--------DASGEHQGLVNLQSLRLEWTGIR--------------- 196 (328)
T ss_dssp EEETTCC------------CCCSCSE------EE--------C-CCCEEESTTCCEEEEEEECCC---------------
T ss_pred CCCCCcc------------ccChhHh------hc--------cchhhhccCCCCCEEECcCCCcC---------------
Confidence 5554310 0111111 10 11223456899999999877421
Q ss_pred eecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCcccc
Q 048755 535 KLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLES 614 (674)
Q Consensus 535 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~ 614 (674)
..+.. ...+++|+.|+|.+|... .++.. ...+++|++|++++|.....++. ..+.+++|+.
T Consensus 197 --------~lp~~-l~~l~~L~~L~L~~N~l~-~l~~~--l~~l~~L~~L~Ls~n~~~~~~p~-------~~~~l~~L~~ 257 (328)
T 4fcg_A 197 --------SLPAS-IANLQNLKSLKIRNSPLS-ALGPA--IHHLPKLEELDLRGCTALRNYPP-------IFGGRAPLKR 257 (328)
T ss_dssp --------CCCGG-GGGCTTCCEEEEESSCCC-CCCGG--GGGCTTCCEEECTTCTTCCBCCC-------CTTCCCCCCE
T ss_pred --------cchHh-hcCCCCCCEEEccCCCCC-cCchh--hccCCCCCEEECcCCcchhhhHH-------HhcCCCCCCE
Confidence 12222 345799999999998754 44433 36799999999999976665432 4567899999
Q ss_pred ccccCcccccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccceeccc
Q 048755 615 LFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTLELKN 670 (674)
Q Consensus 615 L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L~l~~ 670 (674)
|++++|..+..+ |..++.+++|++|++++|+.+..+|.....+++|+.+++..
T Consensus 258 L~L~~n~~~~~~---p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 258 LILKDCSNLLTL---PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp EECTTCTTCCBC---CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred EECCCCCchhhc---chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 999999988888 66789999999999999999999999888899999998764
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.83 E-value=2.6e-20 Score=187.64 Aligned_cols=246 Identities=15% Similarity=0.185 Sum_probs=186.3
Q ss_pred ccceeEeecccccc---CCCCCc-CCCCCcEEEccc-CCCcccCchhhcCCCcceEEEecCcccC-CCCcccccccCCcE
Q 048755 308 KVCTAISLFNTNIS---ELPQGF-ECPQLKYFHIRN-DPSLRISDNIFTGMTELRVLDFTEMHLL-ALPSSLGLLQNLQT 381 (674)
Q Consensus 308 ~~~~~l~l~~~~~~---~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~ 381 (674)
.+++.|+++++.+. .+|..+ .+++|++|++++ |......+..|.++++|++|++++|.+. .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 56888888888876 467666 888899999985 7776555556788899999999998887 67888888999999
Q ss_pred EEcCCcCCCC--cccccCcCCccEEecCCCCch-hchHhhcCCC-CCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccC
Q 048755 382 LSLDFCILGD--IAIIGDLKKLEILTLRGSDME-KLVEEMGELT-QLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQS 457 (674)
Q Consensus 382 L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 457 (674)
|++++|.+.. |..++.+++|++|++++|.+. .+|..+..++ +|++|++++|......|.. ++.++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCC
Confidence 9999887763 677888899999999998887 7888888887 8899999888655556655 77776 899998888
Q ss_pred CCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeec
Q 048755 458 PIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLT 537 (674)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 537 (674)
.+ ....+..++.+++|+.|++++|.....++.+..+++|+.|+++.+....
T Consensus 208 ~l------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~----------------- 258 (313)
T 1ogq_A 208 ML------------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG----------------- 258 (313)
T ss_dssp EE------------EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE-----------------
T ss_pred cc------------cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccC-----------------
Confidence 76 2234566778888999999888876555567778888888887554221
Q ss_pred CCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCce
Q 048755 538 NGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLV 593 (674)
Q Consensus 538 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 593 (674)
..+ .....+++|+.|+|.+|.....++.. ..+++|+.|++.+++.+.
T Consensus 259 -----~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 259 -----TLP-QGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -----CCC-GGGGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSSEEE
T ss_pred -----cCC-hHHhcCcCCCEEECcCCcccccCCCC---ccccccChHHhcCCCCcc
Confidence 112 22344788899999888755555432 678888888888886444
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.2e-19 Score=184.91 Aligned_cols=295 Identities=16% Similarity=0.179 Sum_probs=215.4
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCCCC--cccccCcCCccEEec
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTL 406 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l 406 (674)
.+++.++++++....+|... .++|++|++++|.+..+ |..+..+++|++|++++|.++. +..++.+++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 37889999998888887765 46899999999999877 4578999999999999998877 467889999999999
Q ss_pred CCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCcc
Q 048755 407 RGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLT 486 (674)
Q Consensus 407 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 486 (674)
++|.++.+|..+. ++|++|++++| .+..++...++.+++|++|++.+|.+.. ....+..++.+ +|+
T Consensus 110 ~~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 110 SKNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN----------SGFEPGAFDGL-KLN 175 (332)
T ss_dssp CSSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG----------GGSCTTSSCSC-CCS
T ss_pred CCCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc----------CCCCcccccCC-ccC
Confidence 9999998887655 79999999998 4566776668899999999999887621 11223445555 889
Q ss_pred EEEeeeccCCCCCcccccccCccEEEEEEcccccccC-CCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCC
Q 048755 487 SLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVG-PWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPD 565 (674)
Q Consensus 487 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~ 565 (674)
.|+++++....+|..+. ++|+.|+++.+......+ .+..++++..|++.++.....++.....+++|+.|++.+|.
T Consensus 176 ~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~- 252 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK- 252 (332)
T ss_dssp CCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-
T ss_pred EEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-
Confidence 99999888888887664 688888887665432222 34456678888888766666665556678999999999885
Q ss_pred ccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEe
Q 048755 566 MKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVE 645 (674)
Q Consensus 566 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~ 645 (674)
+..++.. ...+++|+.|+++++ .++.++............+++|+.|++.+++ +..+...+..+..+++|+.|++.
T Consensus 253 l~~lp~~--l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 253 LSRVPAG--LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp CCBCCTT--GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC-
T ss_pred CeecChh--hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhcc
Confidence 4455543 367899999999987 5666543322111012236889999999876 33222234556778999999998
Q ss_pred cCC
Q 048755 646 GCD 648 (674)
Q Consensus 646 ~C~ 648 (674)
+|.
T Consensus 329 ~n~ 331 (332)
T 2ft3_A 329 NYK 331 (332)
T ss_dssp ---
T ss_pred ccc
Confidence 874
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.83 E-value=8.1e-20 Score=187.81 Aligned_cols=280 Identities=17% Similarity=0.153 Sum_probs=147.3
Q ss_pred CCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEcCCcCCCC--cccccCcCCccEEe
Q 048755 329 CPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILT 405 (674)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~ 405 (674)
|+.....+.+++....+|... .++|++|++++|.+..+|. .+..+++|++|++++|.++. +..++.+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 333334444444444444432 2355555555555555433 45555555555555555544 23455556666666
Q ss_pred cCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCCh-hhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCC
Q 048755 406 LRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPP-NVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLS 483 (674)
Q Consensus 406 l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 483 (674)
+++|.++.+|.. ++++++|++|++++| .+..++. ..++.+++|++|++++|... .......++.++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~-----------~~~~~~~~~~l~ 174 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF-----------TKIQRKDFAGLT 174 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC-----------CEECTTTTTTCC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc-----------cccCHHHccCCC
Confidence 666666655544 556666666666665 3334444 33556666666666665310 111223455566
Q ss_pred CccEEEeeeccCCCC-CcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecC
Q 048755 484 KLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDG 562 (674)
Q Consensus 484 ~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 562 (674)
+|+.|++++|....+ |..+..+++|+.|+++.+.. ...+......+++|+.|++.+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-----------------------~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-----------------------ILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS-----------------------TTHHHHHHHHTTTEEEEEEES
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc-----------------------ccchhhhhhhcccccEEECCC
Confidence 666666666664443 45566666666666654431 112233344467777777777
Q ss_pred CCCccccccCC-CCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCC-ccccCCcc
Q 048755 563 LPDMKNVLCEP-GREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLT-AESFSKLK 640 (674)
Q Consensus 563 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-~~~l~~L~ 640 (674)
|.......... .....+.++.+.+.++ .+..-... ..+.....+++|+.|+++++ .++.+ |.. ++.+++|+
T Consensus 232 n~l~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~--~l~~~l~~l~~L~~L~Ls~N-~l~~i---~~~~~~~l~~L~ 304 (353)
T 2z80_A 232 TDLDTFHFSELSTGETNSLIKKFTFRNV-KITDESLF--QVMKLLNQISGLLELEFSRN-QLKSV---PDGIFDRLTSLQ 304 (353)
T ss_dssp CBCTTCCCC------CCCCCCEEEEESC-BCCHHHHH--HHHHHHHTCTTCCEEECCSS-CCCCC---CTTTTTTCTTCC
T ss_pred Cccccccccccccccccchhhccccccc-cccCcchh--hhHHHHhcccCCCEEECCCC-CCCcc---CHHHHhcCCCCC
Confidence 65322111111 1123456666666665 11110000 00002345778888888886 46666 444 36789999
Q ss_pred EEEEecCCCcccc
Q 048755 641 TIRVEGCDKLKNV 653 (674)
Q Consensus 641 ~L~i~~C~~L~~l 653 (674)
+|++++|+-..+.
T Consensus 305 ~L~L~~N~~~~~~ 317 (353)
T 2z80_A 305 KIWLHTNPWDCSC 317 (353)
T ss_dssp EEECCSSCBCCCH
T ss_pred EEEeeCCCccCcC
Confidence 9999988644433
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.83 E-value=1.8e-19 Score=196.49 Aligned_cols=257 Identities=20% Similarity=0.158 Sum_probs=196.5
Q ss_pred cceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcC
Q 048755 309 VCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 309 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 388 (674)
+++.|+++++.+..+|..+. ++|+.|++++|.+..++. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 46788888899988888765 899999999998887776 47899999999999998887 67899999999998
Q ss_pred CCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccC
Q 048755 389 LGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVD 468 (674)
Q Consensus 389 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 468 (674)
++.++. .+.+|++|++++|+++.+|.. +++|++|++++| .+..+|. .+++|+.|++.+|.+..
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~------- 175 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTS------- 175 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSC-------
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCC-------
Confidence 887544 678999999999999988863 588999999998 5555653 35778899998887621
Q ss_pred CcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhH
Q 048755 469 GERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGH 548 (674)
Q Consensus 469 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 548 (674)
.+ ..+++|+.|++++|.+..+|.. +++|+.|.++.+... .+ +
T Consensus 176 ------l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l----------------------~--- 217 (622)
T 3g06_A 176 ------LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SL----------------------P--- 217 (622)
T ss_dssp ------CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SC----------------------C---
T ss_pred ------Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-cc----------------------C---
Confidence 11 3468899999999988887764 367888888654321 11 1
Q ss_pred HhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCccccccccc
Q 048755 549 IMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICC 628 (674)
Q Consensus 549 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~ 628 (674)
..+++|+.|++++|. ++.++ ..+++|+.|++++| .++.++ . .+++|+.|++++| .++.+
T Consensus 218 -~~~~~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~Ls~N-~L~~lp---------~-~~~~L~~L~Ls~N-~L~~l-- 276 (622)
T 3g06_A 218 -ALPSGLKELIVSGNR-LTSLP-----VLPSELKELMVSGN-RLTSLP---------M-LPSGLLSLSVYRN-QLTRL-- 276 (622)
T ss_dssp -CCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSS-CCSCCC---------C-CCTTCCEEECCSS-CCCSC--
T ss_pred -CCCCCCCEEEccCCc-cCcCC-----CCCCcCcEEECCCC-CCCcCC---------c-ccccCcEEeCCCC-CCCcC--
Confidence 124788899998874 33333 45788999999887 555542 1 5688999999887 57777
Q ss_pred CCCCccccCCccEEEEecCCCc
Q 048755 629 GPLTAESFSKLKTIRVEGCDKL 650 (674)
Q Consensus 629 ~~~~~~~l~~L~~L~i~~C~~L 650 (674)
|..+..+++|+.|++++|+--
T Consensus 277 -p~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 277 -PESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp -CGGGGGSCTTCEEECCSCCCC
T ss_pred -CHHHhhccccCEEEecCCCCC
Confidence 556788899999999987643
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.82 E-value=6.5e-20 Score=184.56 Aligned_cols=241 Identities=22% Similarity=0.224 Sum_probs=181.8
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC---CcccccccCCcEEEcCCc
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL---PSSLGLLQNLQTLSLDFC 387 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~ 387 (674)
+.+...++.+..+|..+. ++++.|++++|.+..++...|.++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 356777778888887653 7899999999999888888889999999999999988754 566778899999999999
Q ss_pred CCCC-cccccCcCCccEEecCCCCchhchH--hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccc
Q 048755 388 ILGD-IAIIGDLKKLEILTLRGSDMEKLVE--EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKV 464 (674)
Q Consensus 388 ~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 464 (674)
.+.. +..+..+++|++|++++|.+..++. .+..+++|++|++++|... ..++..++.+++|++|++++|.+.
T Consensus 89 ~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~---- 163 (306)
T 2z66_A 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQ---- 163 (306)
T ss_dssp SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEG----
T ss_pred ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCccc----
Confidence 8877 5668889999999999998887764 6888999999999998543 334444788999999999888762
Q ss_pred cccCCcccccchhhhcCCCCccEEEeeeccCCCC-CcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCcee
Q 048755 465 GGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANIC 543 (674)
Q Consensus 465 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 543 (674)
....+..+..+++|+.|++++|....+ |..+..+++|+.|+++.+... .
T Consensus 164 -------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------------------~ 213 (306)
T 2z66_A 164 -------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-----------------------S 213 (306)
T ss_dssp -------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-----------------------B
T ss_pred -------cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-----------------------c
Confidence 112445677888999999998887766 556777888888888654321 1
Q ss_pred cchhHHhhhccccEEEecCCCCccccccCCCCCCcc-ccceeeeccc
Q 048755 544 LNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFP-KLNRLQIEHN 589 (674)
Q Consensus 544 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~ 589 (674)
.+......+++|+.|++++|......+..+ ..+| +|++|+++++
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSC--CCCCTTCCEEECTTC
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHH--HhhhccCCEEEccCC
Confidence 122223446888888888886544333322 4554 8888888877
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=190.30 Aligned_cols=240 Identities=21% Similarity=0.276 Sum_probs=188.9
Q ss_pred ceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcC
Q 048755 310 CTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 310 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 388 (674)
.+.+...+..+..+|..+. ++++.|++++|.+..++...|.++++|++|+|++|.+..++ ..+..+++|++|++++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3467777788888888764 78999999999999999888999999999999999999774 678899999999999998
Q ss_pred CCCc--ccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccc
Q 048755 389 LGDI--AIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVG 465 (674)
Q Consensus 389 ~~~~--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 465 (674)
++.+ ..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+..+++|++|++++|.+.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----- 198 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----- 198 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-----
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-----
Confidence 8873 458899999999999999998875 68899999999999988888888877899999999999999762
Q ss_pred ccCCcccccchhhhcCCCCccEEEeeeccCCCC-CcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceec
Q 048755 466 GVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICL 544 (674)
Q Consensus 466 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 544 (674)
.+..+..+++|+.|++++|.+..+ |..+..+++|+.|+++.+... ..
T Consensus 199 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------~~ 246 (440)
T 3zyj_A 199 ---------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-----------------------VI 246 (440)
T ss_dssp ---------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----------------------EE
T ss_pred ---------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee-----------------------EE
Confidence 122467889999999999987766 567788899999988655322 11
Q ss_pred chhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccc
Q 048755 545 NEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHN 589 (674)
Q Consensus 545 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 589 (674)
.......+++|+.|+|.+|.. +.++.. ....+++|+.|++.++
T Consensus 247 ~~~~~~~l~~L~~L~L~~N~l-~~~~~~-~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHNNL-TLLPHD-LFTPLHHLERIHLHHN 289 (440)
T ss_dssp CTTSSTTCTTCCEEECTTSCC-CCCCTT-TTSSCTTCCEEECCSS
T ss_pred ChhhhcCCCCCCEEECCCCCC-CccChh-HhccccCCCEEEcCCC
Confidence 222233467777777777643 233221 1245677777777765
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.4e-19 Score=190.78 Aligned_cols=240 Identities=20% Similarity=0.237 Sum_probs=187.3
Q ss_pred ceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcC
Q 048755 310 CTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 310 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 388 (674)
...+...+..+..+|..+. ++++.|++++|.+..+++..|.++++|++|+|++|.+..+ |..+..+++|++|++++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 3456677777888887654 7899999999999999888899999999999999999876 4678899999999999998
Q ss_pred CCC-c-ccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccc
Q 048755 389 LGD-I-AIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVG 465 (674)
Q Consensus 389 ~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 465 (674)
+.. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+..+++|++|++++|.+.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----- 209 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK----- 209 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-----
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-----
Confidence 887 3 447889999999999999998875 68899999999999988888888877889999999999998762
Q ss_pred ccCCcccccchhhhcCCCCccEEEeeeccCCCC-CcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceec
Q 048755 466 GVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICL 544 (674)
Q Consensus 466 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 544 (674)
.+..+..+++|+.|++++|....+ |..+..+++|+.|+++.+... ..
T Consensus 210 ---------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----------------------~~ 257 (452)
T 3zyi_A 210 ---------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-----------------------LI 257 (452)
T ss_dssp ---------SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC-----------------------EE
T ss_pred ---------ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc-----------------------eE
Confidence 113467888999999999987766 556788889999988655322 11
Q ss_pred chhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccc
Q 048755 545 NEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHN 589 (674)
Q Consensus 545 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 589 (674)
.+.....+++|+.|+|.+|.. +.++... ...+++|+.|++.++
T Consensus 258 ~~~~~~~l~~L~~L~L~~N~l-~~~~~~~-~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHNNL-SSLPHDL-FTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTTTTTCTTCCEEECCSSCC-SCCCTTS-STTCTTCCEEECCSS
T ss_pred CHHHhcCCCCCCEEECCCCcC-CccChHH-hccccCCCEEEccCC
Confidence 222334467777777777743 3333221 245777777777766
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.8e-19 Score=185.22 Aligned_cols=194 Identities=19% Similarity=0.241 Sum_probs=162.4
Q ss_pred eEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCCC
Q 048755 312 AISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCILG 390 (674)
Q Consensus 312 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~ 390 (674)
..+.+++.+..+|..+. ++|+.|++++|.+..++...|.++++|++|++++|.+..+ |..++.+++|++|++++|.++
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 35667788888887654 6899999999999999888889999999999999999876 566899999999999999888
Q ss_pred C-ccc-ccCcCCccEEecCCCCchhchH--hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccc
Q 048755 391 D-IAI-IGDLKKLEILTLRGSDMEKLVE--EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGG 466 (674)
Q Consensus 391 ~-~~~-~~~l~~L~~L~l~~~~~~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 466 (674)
. +.. ++.+++|++|++++|.++.+|. .+.++++|++|++++|..++.+++..++.+++|++|++++|.+.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~------ 187 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------ 187 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC------
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC------
Confidence 7 333 7889999999999999998886 68899999999999987677776666889999999999998762
Q ss_pred cCCcccccchhhhcCCCCccEEEeeeccCCCCCccc-ccccCccEEEEEEccc
Q 048755 467 VDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRISIGYD 518 (674)
Q Consensus 467 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~ 518 (674)
...+..++.+++|+.|+++++....+|..+ ..+++|+.|+++.+..
T Consensus 188 ------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 188 ------SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp ------EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred ------ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence 234567788899999999999887777654 4588999999987653
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.8e-19 Score=191.50 Aligned_cols=256 Identities=19% Similarity=0.135 Sum_probs=203.7
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCC
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGS 409 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 409 (674)
.+++.|++++|.+..+|...+ ++|++|++++|.++.+|. .+++|++|++++|.++.++. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 358899999999988887653 799999999999999987 57899999999999888544 7899999999999
Q ss_pred CchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEE
Q 048755 410 DMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLE 489 (674)
Q Consensus 410 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 489 (674)
.++.+|. .+++|++|++++| .++.+|.. +++|++|++++|.+.. .+ ..+++|+.|+
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~-------------l~---~~~~~L~~L~ 167 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLAS-------------LP---ALPSELCKLW 167 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSC-------------CC---CCCTTCCEEE
T ss_pred cCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCC-------------cC---CccCCCCEEE
Confidence 9999887 6789999999998 56667653 5899999999987621 11 1346899999
Q ss_pred eeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCcccc
Q 048755 490 ILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNV 569 (674)
Q Consensus 490 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 569 (674)
+.+|.+..+| ..+++|+.|+++.+... . .+ ..+++|+.|.+.+|. ++.+
T Consensus 168 L~~N~l~~l~---~~~~~L~~L~Ls~N~l~-~----------------------l~----~~~~~L~~L~L~~N~-l~~l 216 (622)
T 3g06_A 168 AYNNQLTSLP---MLPSGLQELSVSDNQLA-S----------------------LP----TLPSELYKLWAYNNR-LTSL 216 (622)
T ss_dssp CCSSCCSCCC---CCCTTCCEEECCSSCCS-C----------------------CC----CCCTTCCEEECCSSC-CSSC
T ss_pred CCCCCCCCCc---ccCCCCcEEECCCCCCC-C----------------------CC----CccchhhEEECcCCc-cccc
Confidence 9999988888 45688999988765421 1 11 124789999999885 3333
Q ss_pred ccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCCC
Q 048755 570 LCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDK 649 (674)
Q Consensus 570 ~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~ 649 (674)
+ ..+++|+.|++++| .++.++ ..+++|+.|+++++ .++.+ |. .+++|++|++++| +
T Consensus 217 ~-----~~~~~L~~L~Ls~N-~L~~lp----------~~l~~L~~L~Ls~N-~L~~l---p~---~~~~L~~L~Ls~N-~ 272 (622)
T 3g06_A 217 P-----ALPSGLKELIVSGN-RLTSLP----------VLPSELKELMVSGN-RLTSL---PM---LPSGLLSLSVYRN-Q 272 (622)
T ss_dssp C-----CCCTTCCEEECCSS-CCSCCC----------CCCTTCCEEECCSS-CCSCC---CC---CCTTCCEEECCSS-C
T ss_pred C-----CCCCCCCEEEccCC-ccCcCC----------CCCCcCcEEECCCC-CCCcC---Cc---ccccCcEEeCCCC-C
Confidence 3 24689999999988 555542 35689999999997 67777 33 5689999999997 6
Q ss_pred ccccCCchhhhhcccceeccccc
Q 048755 650 LKNVFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 650 L~~l~~~~~~l~~L~~L~l~~c~ 672 (674)
+..+|+....+++|+.|++++++
T Consensus 273 L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 273 LTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCcCCHHHhhccccCEEEecCCC
Confidence 88998877779999999999874
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.80 E-value=6.5e-19 Score=175.23 Aligned_cols=220 Identities=18% Similarity=0.210 Sum_probs=158.9
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcC-
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCI- 388 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~- 388 (674)
+.++..++.+..+|..+ .++|+.|++++|.+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45666777777777654 46888888888888888877778888888888888888766 6678888888888888885
Q ss_pred CCC--cccccCcCCccEEecCCCCchhc-hHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccc
Q 048755 389 LGD--IAIIGDLKKLEILTLRGSDMEKL-VEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVG 465 (674)
Q Consensus 389 ~~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 465 (674)
+.. +..+..+++|++|++++|.+..+ |..+.++++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~----- 166 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRIS----- 166 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCccc-----
Confidence 655 45677888888888888888766 455778888888888887 445566555778888888888887652
Q ss_pred ccCCcccccchhhhcCCCCccEEEeeeccCCCC-CcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceec
Q 048755 466 GVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICL 544 (674)
Q Consensus 466 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 544 (674)
......+..+++|+.|++++|....+ |..+..+++|+.|+++.+... ..
T Consensus 167 -------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----------------------~~ 216 (285)
T 1ozn_A 167 -------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-----------------------AL 216 (285)
T ss_dssp -------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-----------------------CC
T ss_pred -------ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC-----------------------cC
Confidence 11223466778888888888876655 566777888888887655321 12
Q ss_pred chhHHhhhccccEEEecCCCCcc
Q 048755 545 NEGHIMQLKGIEDLTLDGLPDMK 567 (674)
Q Consensus 545 ~~~~~~~l~~L~~L~L~~~~~~~ 567 (674)
+......+++|+.|++.+++...
T Consensus 217 ~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 217 PTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHcccCcccCEEeccCCCccC
Confidence 33334456778888887776443
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=9.3e-20 Score=184.13 Aligned_cols=268 Identities=15% Similarity=0.135 Sum_probs=183.1
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecC
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLR 407 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 407 (674)
.+++|+.|++++|.+..+++..|.++++|++|++++|.+...++ +..+++|++|++++|.++.++ ..++|++|+++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~ 107 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccccc---CCCCcCEEECC
Confidence 45688888888888888887778888889999998888876654 788888888888888766532 34788888888
Q ss_pred CCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhh-cCCCCcc
Q 048755 408 GSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDEL-NNLSKLT 486 (674)
Q Consensus 408 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~ 486 (674)
+|.+..++. ..+++|++|++++| .+..+++..++.+++|++|++++|.+. ...+..+ ..+++|+
T Consensus 108 ~n~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 108 NNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEID------------TVNFAELAASSDTLE 172 (317)
T ss_dssp SSCCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCC------------EEEGGGGGGGTTTCC
T ss_pred CCccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCC------------cccHHHHhhccCcCC
Confidence 888887764 34778888888888 445555444778888888888888762 1122333 3678888
Q ss_pred EEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCc
Q 048755 487 SLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDM 566 (674)
Q Consensus 487 ~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 566 (674)
.|++++|....++.. ..+++|+.|+++.+.. ...+.. ...+++|+.|++.+|. +
T Consensus 173 ~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l-----------------------~~l~~~-~~~l~~L~~L~L~~N~-l 226 (317)
T 3o53_A 173 HLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKL-----------------------AFMGPE-FQSAAGVTWISLRNNK-L 226 (317)
T ss_dssp EEECTTSCCCEEECC-CCCTTCCEEECCSSCC-----------------------CEECGG-GGGGTTCSEEECTTSC-C
T ss_pred EEECCCCcCcccccc-cccccCCEEECCCCcC-----------------------Ccchhh-hcccCcccEEECcCCc-c
Confidence 888888887766543 3477888888765532 122233 3457899999999885 4
Q ss_pred cccccCCCCCCccccceeeeccccCc-eeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEe
Q 048755 567 KNVLCEPGREVFPKLNRLQIEHNGNL-VRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVE 645 (674)
Q Consensus 567 ~~~~~~~~~~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~ 645 (674)
+.++.. ...+++|+.|++++++-. ..++. ....+++|+.|.+.++..++.. .......+.+....-.
T Consensus 227 ~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~-------~~~~~~~L~~l~l~~~~~l~~~---~~~~~~~~~~~~~~~~ 294 (317)
T 3o53_A 227 VLIEKA--LRFSQNLEHFDLRGNGFHCGTLRD-------FFSKNQRVQTVAKQTVKKLTGQ---NEEECTVPTLGHYGAY 294 (317)
T ss_dssp CEECTT--CCCCTTCCEEECTTCCCBHHHHHH-------HHHTCHHHHHHHHHHHHHHHSS---SSCCCSSTTCEEETTE
T ss_pred cchhhH--hhcCCCCCEEEccCCCccCcCHHH-------HHhccccceEEECCCchhccCC---chhccCCCceecccce
Confidence 455543 367899999999988322 11110 3446788999998887777654 2222233444443344
Q ss_pred cCCCccc
Q 048755 646 GCDKLKN 652 (674)
Q Consensus 646 ~C~~L~~ 652 (674)
.|..+..
T Consensus 295 cc~~l~~ 301 (317)
T 3o53_A 295 CCEDLPA 301 (317)
T ss_dssp EEBCCTT
T ss_pred eeccCCh
Confidence 5665543
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=1.6e-18 Score=172.48 Aligned_cols=200 Identities=25% Similarity=0.410 Sum_probs=172.9
Q ss_pred cccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcc-cCCC-CcccccccCCc
Q 048755 305 DTLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMH-LLAL-PSSLGLLQNLQ 380 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~-~~~l-p~~~~~l~~L~ 380 (674)
..+++++.|+++++.+..++.. + .+++|+.|++++|.+..+.+..|.++++|++|++++|. +..+ |..+..+++|+
T Consensus 29 ~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 3457899999999999887753 3 88999999999999999888888999999999999997 8877 67899999999
Q ss_pred EEEcCCcCCCC--cccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccC
Q 048755 381 TLSLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQS 457 (674)
Q Consensus 381 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 457 (674)
+|++++|.+.. +..+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.++...+..+++|++|++++|
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCC
Confidence 99999998877 45688999999999999999988754 889999999999998 566777666889999999999999
Q ss_pred CCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcc-cccccCccEEEEEEcc
Q 048755 458 PIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRISIGY 517 (674)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~ 517 (674)
.+. ...+..++.+++|+.|++++|....++.. +..+++|+.|+++++.
T Consensus 188 ~l~------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 188 RVA------------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCC------------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccc------------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 862 23356778899999999999998888754 7889999999997664
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=1.2e-17 Score=177.71 Aligned_cols=198 Identities=20% Similarity=0.308 Sum_probs=166.8
Q ss_pred cccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcE
Q 048755 305 DTLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQT 381 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~ 381 (674)
...++++.|+++++.+..++.. + .+++|+.|++++|.+..+++..|.++++|++|+|++|.+..+|. .+..+++|++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 3457899999999999877443 3 89999999999999999998889999999999999999998865 4888999999
Q ss_pred EEcCCcCCCCc--ccccCcCCccEEecCCC-CchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccC
Q 048755 382 LSLDFCILGDI--AIIGDLKKLEILTLRGS-DMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQS 457 (674)
Q Consensus 382 L~l~~~~~~~~--~~~~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 457 (674)
|++++|.+..+ ..+..+++|++|++++| .+..++. .+..+++|++|++++| .+..+|. +..+++|++|++++|
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN--LTPLVGLEELEMSGN 228 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC--CTTCTTCCEEECTTS
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc--ccccccccEEECcCC
Confidence 99999998873 46889999999999995 6777775 5889999999999998 5566664 789999999999999
Q ss_pred CCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCC-CcccccccCccEEEEEEcc
Q 048755 458 PIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~ 517 (674)
.+. ...+..+..+++|+.|++++|....+ +..+..+++|+.|+++.+.
T Consensus 229 ~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 229 HFP------------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp CCS------------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCc------------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 872 33456788899999999999987666 4567888999999998664
No 64
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=1.7e-17 Score=164.70 Aligned_cols=197 Identities=20% Similarity=0.233 Sum_probs=171.5
Q ss_pred ccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcC
Q 048755 306 TLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLD 385 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 385 (674)
...+++.+++.++.+..+|..+. ++++.|++++|.+..+++..|.++++|++|++++|.+..++.. +.+++|++|+++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 35678889999999999998764 7999999999999999888899999999999999999988664 789999999999
Q ss_pred CcCCCC-cccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccc
Q 048755 386 FCILGD-IAIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGK 463 (674)
Q Consensus 386 ~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 463 (674)
+|.+.. |..+..+++|++|++++|+++.+| ..+..+++|++|++++| .+..++...+..+++|+.|++++|.+..
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 162 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTE-- 162 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSC--
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCc--
Confidence 999988 566889999999999999999888 45899999999999998 5667777768899999999999998731
Q ss_pred ccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcc
Q 048755 464 VGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 517 (674)
.....+..+++|+.|++++|....+|..+....+|+.+.+.++.
T Consensus 163 ----------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 163 ----------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ----------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ----------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 12234577899999999999999999999888999999997654
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=1.6e-17 Score=176.02 Aligned_cols=198 Identities=19% Similarity=0.317 Sum_probs=166.3
Q ss_pred cccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcE
Q 048755 305 DTLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQT 381 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~ 381 (674)
....+++.|+++++.+..++.. + .+++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|. .+..+++|++
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 3457789999999999877643 3 89999999999999999998889999999999999999998865 6889999999
Q ss_pred EEcCCcCCCCc--ccccCcCCccEEecCCC-CchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccC
Q 048755 382 LSLDFCILGDI--AIIGDLKKLEILTLRGS-DMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQS 457 (674)
Q Consensus 382 L~l~~~~~~~~--~~~~~l~~L~~L~l~~~-~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 457 (674)
|++++|.+..+ ..+..+++|++|++++| .+..++. .+..+++|++|++++| .+..+|. +..+++|++|++++|
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN--LTPLIKLDELDLSGN 217 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC--CTTCSSCCEEECTTS
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc--cCCCcccCEEECCCC
Confidence 99999998873 46889999999999995 5667765 5889999999999998 5667774 789999999999999
Q ss_pred CCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCC-cccccccCccEEEEEEcc
Q 048755 458 PIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~ 517 (674)
.+. ...+..+..+++|+.|++.+|.+..++ ..+..+++|+.|+++.+.
T Consensus 218 ~l~------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 218 HLS------------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp CCC------------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred ccC------------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 762 233467788899999999999877664 456888999999997654
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.75 E-value=3.5e-17 Score=161.16 Aligned_cols=195 Identities=21% Similarity=0.343 Sum_probs=166.3
Q ss_pred cceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc-cccccCCcEEEcCCc
Q 048755 309 VCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS-LGLLQNLQTLSLDFC 387 (674)
Q Consensus 309 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 387 (674)
..+.++++++.+..+|..+. ++++.|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 46788999999999987664 7899999999999999988899999999999999999988765 578999999999999
Q ss_pred CCCC-c-ccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccc
Q 048755 388 ILGD-I-AIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKV 464 (674)
Q Consensus 388 ~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 464 (674)
.+.. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..++...++.+++|++|++++|.+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~---- 170 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLK---- 170 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS----
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCc----
Confidence 9887 3 456889999999999999998874 4789999999999998 566777766889999999999999762
Q ss_pred cccCCcccccchhhhcCCCCccEEEeeeccCCCCCcc-cccccCccEEEEEEcc
Q 048755 465 GGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD-LSFFKMLQRYRISIGY 517 (674)
Q Consensus 465 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~ 517 (674)
......+..+++|+.|++++|....+|.. +..+++|+.|++++++
T Consensus 171 --------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 171 --------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred --------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 12234567889999999999998888765 6788999999997664
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.4e-17 Score=167.37 Aligned_cols=201 Identities=19% Similarity=0.214 Sum_probs=167.5
Q ss_pred cccccceeEeeccccccCCCCCc--CCCCCcEEEcccCCCcccC--chhhcCCCcceEEEecCcccCCCCcccccccCCc
Q 048755 305 DTLKVCTAISLFNTNISELPQGF--ECPQLKYFHIRNDPSLRIS--DNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQ 380 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~--~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~ 380 (674)
...+++++|+++++.+..+|... .+++|+.|++++|.+..+. +..+.++++|++|++++|.+..+|..+..+++|+
T Consensus 25 ~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCC
Confidence 34578999999999999998853 8999999999999877553 3445679999999999999999998899999999
Q ss_pred EEEcCCcCCCCc---ccccCcCCccEEecCCCCchhc-hHhhcCCCCCcEEeCCCCCCCC-CCChhhhhCCCCCCeEEec
Q 048755 381 TLSLDFCILGDI---AIIGDLKKLEILTLRGSDMEKL-VEEMGELTQLRLLDLSYCFNLQ-VIPPNVISSLSRLEELYIG 455 (674)
Q Consensus 381 ~L~l~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~ 455 (674)
+|++++|.+... ..+..+++|++|++++|.+... |..+..+++|++|++++|.... ..|.. ++.+++|++|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEECC
Confidence 999999988763 4688999999999999998854 4568899999999999995544 24443 8899999999999
Q ss_pred cCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCc-ccccccCccEEEEEEccc
Q 048755 456 QSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKMLQRYRISIGYD 518 (674)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~ 518 (674)
+|.+. ...+..++.+++|+.|++++|....++. .+..+++|+.|+++.+..
T Consensus 184 ~n~l~------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 184 QCQLE------------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp TSCCC------------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred CCCcC------------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 99762 2334567888999999999999877765 568889999999986654
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=4.6e-17 Score=163.34 Aligned_cols=191 Identities=18% Similarity=0.271 Sum_probs=167.3
Q ss_pred ccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcC
Q 048755 306 TLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLD 385 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 385 (674)
.+++++.|++.++.+..++....+++|+.|++++|.+..+++ +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 467899999999999998876689999999999999988877 799999999999999998876 68899999999999
Q ss_pred CcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccc
Q 048755 386 FCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVG 465 (674)
Q Consensus 386 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 465 (674)
+|.+..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+.
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~----- 186 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKIS----- 186 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCccC-----
Confidence 9999887779999999999999999998877 889999999999999 5556655 789999999999999762
Q ss_pred ccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEccc
Q 048755 466 GVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYD 518 (674)
Q Consensus 466 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 518 (674)
....+..+++|+.|++++|....+++ +..+++|+.|+++.+..
T Consensus 187 ---------~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 187 ---------DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ---------CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred ---------cChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 11227788999999999999888874 78899999999987753
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=4.7e-19 Score=195.85 Aligned_cols=118 Identities=10% Similarity=0.070 Sum_probs=60.8
Q ss_pred hhhccccEEEecCCCCccccccCCCCCCccccceeeecc---ccCceeeeecCCCCCCCCCCCCccccccccCccc-ccc
Q 048755 550 MQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEH---NGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRN-LEE 625 (674)
Q Consensus 550 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~---~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~-L~~ 625 (674)
..+++|+.|.+. |..+++.........+++|+.|++.+ |..++..+... .+......+++|+.|++++|.+ +..
T Consensus 375 ~~~~~L~~L~l~-~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 375 QGCQELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-GVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHCTTCSEEEEE-ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-HHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred hhCccCeEEEee-cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-HHHHHHHhCCCCCEEEEecCCCCccH
Confidence 345666666663 22232221111112366677777764 33333321000 0000123478888888877654 221
Q ss_pred cccCCCCc-cccCCccEEEEecCCCccc--cCCchhhhhcccceeccccc
Q 048755 626 ICCGPLTA-ESFSKLKTIRVEGCDKLKN--VFPLVIELTQLRTLELKNVF 672 (674)
Q Consensus 626 ~~~~~~~~-~~l~~L~~L~i~~C~~L~~--l~~~~~~l~~L~~L~l~~c~ 672 (674)
.. ...+ ..+++|++|++.+|. +.+ ++.....+++|+.|+|++|.
T Consensus 453 ~~--~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 453 LG--LSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HH--HHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred HH--HHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC
Confidence 10 0111 347899999999875 543 22222237999999999986
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=3.8e-19 Score=190.13 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=15.6
Q ss_pred cceEEEecCcccC-----CCCcccccccCCcEEEcCCcCC
Q 048755 355 ELRVLDFTEMHLL-----ALPSSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 355 ~Lr~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~ 389 (674)
+|++|++++|.+. .+|..+..+++|++|++++|.+
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 3444444444443 1233444444444444444443
No 71
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=8.7e-20 Score=195.14 Aligned_cols=351 Identities=15% Similarity=0.088 Sum_probs=175.2
Q ss_pred ccceeEeeccccccCCCCC--c-CCCCCcEEEcccCCCccc----CchhhcCCCcceEEEecCcccCCC-Cccc-cccc-
Q 048755 308 KVCTAISLFNTNISELPQG--F-ECPQLKYFHIRNDPSLRI----SDNIFTGMTELRVLDFTEMHLLAL-PSSL-GLLQ- 377 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~-~~l~- 377 (674)
++++.|+++++.+...+.. + .+++|+.|++++|.+... .+..+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4566777776665432211 1 567778888877765532 133456677788888887776532 2222 2233
Q ss_pred ---CCcEEEcCCcCCCC------cccccCcCCccEEecCCCCchhc-hH----h-hcCCCCCcEEeCCCCCCCCCCC---
Q 048755 378 ---NLQTLSLDFCILGD------IAIIGDLKKLEILTLRGSDMEKL-VE----E-MGELTQLRLLDLSYCFNLQVIP--- 439 (674)
Q Consensus 378 ---~L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~l-p~----~-~~~l~~L~~L~l~~~~~~~~~~--- 439 (674)
+|++|++++|.+.. +..+..+++|++|++++|.+... +. . ....++|++|++++|.......
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57888888777663 45566777888888887776532 12 2 1224567788877773322111
Q ss_pred hhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhc-CCCCccEEEeeeccCCC-----CCcccccccCccEEEE
Q 048755 440 PNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELN-NLSKLTSLEILIQDEKT-----LPRDLSFFKMLQRYRI 513 (674)
Q Consensus 440 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-----~~~~l~~~~~L~~L~l 513 (674)
...+..+++|++|++++|.+.... .......+. ..++|+.|+++++.... ++..+..+++|++|++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~--------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAG--------VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHH--------HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHhhCCCCCEEECcCCCcchHH--------HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 122556677777777777651100 001111111 34567777777666443 3455566677777777
Q ss_pred EEcccccc----c-CCCC-cccceeEEeecCCCceec----chhHHhhhccccEEEecCCCCccccccCC---CCCCccc
Q 048755 514 SIGYDWWS----V-GPWD-GISRKFKLKLTNGANICL----NEGHIMQLKGIEDLTLDGLPDMKNVLCEP---GREVFPK 580 (674)
Q Consensus 514 ~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---~~~~l~~ 580 (674)
+.+..... + +.+. ..+++..|++.++..... .......+++|+.|++++|.........+ .....++
T Consensus 235 s~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 65532210 0 1111 234566666665433221 12222335667777777664221111000 0012356
Q ss_pred cceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCC--CCc-cccCCccEEEEecCCCcc-----c
Q 048755 581 LNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGP--LTA-ESFSKLKTIRVEGCDKLK-----N 652 (674)
Q Consensus 581 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~--~~~-~~l~~L~~L~i~~C~~L~-----~ 652 (674)
|+.|++++|. ++..... .++.....+++|+.|+++++ .+....... ..+ ...++|++|++++|. +. .
T Consensus 315 L~~L~L~~n~-l~~~~~~--~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~ 389 (461)
T 1z7x_W 315 LESLWVKSCS-FTAACCS--HFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSS 389 (461)
T ss_dssp CCEEECTTSC-CBGGGHH--HHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHH
T ss_pred ceeeEcCCCC-CchHHHH--HHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHH
Confidence 6777776662 2211000 00001123456666666655 232210000 000 013566666666653 43 3
Q ss_pred cCCchhhhhcccceecccc
Q 048755 653 VFPLVIELTQLRTLELKNV 671 (674)
Q Consensus 653 l~~~~~~l~~L~~L~l~~c 671 (674)
++.....+++|++|+++++
T Consensus 390 l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHCCCCCEEECCSS
T ss_pred HHHHHHhCCCccEEECCCC
Confidence 3333333566666666554
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=1.4e-18 Score=192.28 Aligned_cols=344 Identities=16% Similarity=0.069 Sum_probs=162.5
Q ss_pred cccceeEeeccccccC-CCCCc--CCCCCcEEEcccCCC-cc-cCchhhcCCCcceEEEecCcccCC-----CCcccccc
Q 048755 307 LKVCTAISLFNTNISE-LPQGF--ECPQLKYFHIRNDPS-LR-ISDNIFTGMTELRVLDFTEMHLLA-----LPSSLGLL 376 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~~-~~-~~~~~~~~~~~Lr~L~l~~~~~~~-----lp~~~~~l 376 (674)
.++++.|+++++.+.. .+..+ .+++|+.|++++|.. .. .....+.++++|++|++++|.+.. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 3456667766665431 11111 466777777776632 22 122333456777777777776543 12222345
Q ss_pred cCCcEEEcCCcC--CCC--c-ccccCcCCccEEecCCC-CchhchHhhcCCCCCcEEeCCCCCC----------------
Q 048755 377 QNLQTLSLDFCI--LGD--I-AIIGDLKKLEILTLRGS-DMEKLVEEMGELTQLRLLDLSYCFN---------------- 434 (674)
Q Consensus 377 ~~L~~L~l~~~~--~~~--~-~~~~~l~~L~~L~l~~~-~~~~lp~~~~~l~~L~~L~l~~~~~---------------- 434 (674)
++|++|++++|. +.. + ..+..+++|++|++++| .+..+|..+.++++|++|++..+..
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 577777777664 211 1 11234577777777776 4556666666777777776554321
Q ss_pred ---CCC------CCh----hhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccC-CCCCc
Q 048755 435 ---LQV------IPP----NVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDE-KTLPR 500 (674)
Q Consensus 435 ---~~~------~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~ 500 (674)
+.. ... ..+..+++|++|++++|.+. .......++.+++|+.|++.++.. ..++.
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~-----------~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ-----------SYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC-----------HHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC-----------HHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 100 000 11123455555555555420 111112234556666666665421 11111
Q ss_pred ccccccCccEEEEEEcc--------cccc--cCCCC-cccceeEEeecCCC-ceecchhHHhhhccccEEEec-----CC
Q 048755 501 DLSFFKMLQRYRISIGY--------DWWS--VGPWD-GISRKFKLKLTNGA-NICLNEGHIMQLKGIEDLTLD-----GL 563 (674)
Q Consensus 501 ~l~~~~~L~~L~l~~~~--------~~~~--~~~~~-~~~~~~~l~~~~~~-~~~~~~~~~~~l~~L~~L~L~-----~~ 563 (674)
....+++|+.|++..+. ...+ +..+. ..+++..|...... .......+...+++|+.|++. +|
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 12345666666664321 0000 00000 12233344322111 111122222345666666666 33
Q ss_pred CCccccccC----CCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCc-cccCC
Q 048755 564 PDMKNVLCE----PGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTA-ESFSK 638 (674)
Q Consensus 564 ~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~-~~l~~ 638 (674)
..++..+.. .....+++|+.|++++ .+++..... ....+++|+.|++++|. +.... ...+ ..+++
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~-----l~~~~~~L~~L~L~~~~-i~~~~--~~~l~~~~~~ 482 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY-----IGTYAKKMEMLSVAFAG-DSDLG--MHHVLSGCDS 482 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHH-----HHHHCTTCCEEEEESCC-SSHHH--HHHHHHHCTT
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHH-----HHHhchhccEeeccCCC-CcHHH--HHHHHhcCCC
Confidence 444321110 0013456666666644 222210000 01126778888887764 32210 1111 45799
Q ss_pred ccEEEEecCCCccccC-Cchh-hhhcccceeccccc
Q 048755 639 LKTIRVEGCDKLKNVF-PLVI-ELTQLRTLELKNVF 672 (674)
Q Consensus 639 L~~L~i~~C~~L~~l~-~~~~-~l~~L~~L~l~~c~ 672 (674)
|++|++++|+. .+.. .... .+++|+.|++++|+
T Consensus 483 L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 483 LRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred cCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 99999999885 3321 2122 37899999999986
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=5.4e-18 Score=171.17 Aligned_cols=242 Identities=12% Similarity=0.089 Sum_probs=188.2
Q ss_pred cccceeEeeccccccCCCC-Cc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEc
Q 048755 307 LKVCTAISLFNTNISELPQ-GF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSL 384 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l 384 (674)
.++++.|+++++.+..++. .+ .+++|+.|++++|.+...++ +..+++|++|++++|.+..+| ..++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence 4678999999999988774 33 89999999999999887765 789999999999999988766 3489999999
Q ss_pred CCcCCCCcccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccc
Q 048755 385 DFCILGDIAIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGK 463 (674)
Q Consensus 385 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 463 (674)
++|.+..... ..+++|++|++++|.++.++. .+..+++|++|++++|......+....+.+++|++|++++|.+...
T Consensus 107 ~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp CSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-
Confidence 9999887322 247899999999999998764 6888999999999999544333334335799999999999987311
Q ss_pred ccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCcee
Q 048755 464 VGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANIC 543 (674)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 543 (674)
.....+++|+.|++++|....+|..+..+++|+.|+++.+... .
T Consensus 185 -------------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-----------------------~ 228 (317)
T 3o53_A 185 -------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-----------------------L 228 (317)
T ss_dssp -------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-----------------------E
T ss_pred -------------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-----------------------c
Confidence 2233578999999999999999988999999999999765422 1
Q ss_pred cchhHHhhhccccEEEecCCCCc-cccccCCCCCCccccceeeeccccCceee
Q 048755 544 LNEGHIMQLKGIEDLTLDGLPDM-KNVLCEPGREVFPKLNRLQIEHNGNLVRL 595 (674)
Q Consensus 544 ~~~~~~~~l~~L~~L~L~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 595 (674)
.+.. ...+++|+.|++.+|... ...+.. ...+++|+.|.+.++..++..
T Consensus 229 l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~--~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 229 IEKA-LRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ECTT-CCCCTTCCEEECTTCCCBHHHHHHH--HHTCHHHHHHHHHHHHHHHSS
T ss_pred hhhH-hhcCCCCCEEEccCCCccCcCHHHH--HhccccceEEECCCchhccCC
Confidence 1222 234688999999988765 223322 256889999999888766653
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.5e-18 Score=191.80 Aligned_cols=322 Identities=13% Similarity=0.014 Sum_probs=178.3
Q ss_pred cccceeEeeccccccCCCC-----Cc-CCCCCcEEEcccCCCccc----CchhhcCCCcceEEEecCcccCCCCcccccc
Q 048755 307 LKVCTAISLFNTNISELPQ-----GF-ECPQLKYFHIRNDPSLRI----SDNIFTGMTELRVLDFTEMHLLALPSSLGLL 376 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~-----~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l 376 (674)
.++++.|++.+|.+..... .. .+++|+.|++++|....+ ....+..+++|++|++++|.+..+|..+..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 4667788888776543221 11 677888888887766522 2333456788888888888877777778888
Q ss_pred cCCcEEEcCCcCCC----C-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCe
Q 048755 377 QNLQTLSLDFCILG----D-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEE 451 (674)
Q Consensus 377 ~~L~~L~l~~~~~~----~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 451 (674)
++|++|+++.+... . +..+..+++|+.|+++++....+|..+..+++|++|++++|..........++.+++|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 88888888754221 1 356677788888888877666777777888888888888885222222233577888888
Q ss_pred EEeccCCCccccccccCCcccccchhhhcCCCCccEEEeee-----------ccCC--CCCcccccccCccEEEEEEccc
Q 048755 452 LYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILI-----------QDEK--TLPRDLSFFKMLQRYRISIGYD 518 (674)
Q Consensus 452 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~--~~~~~l~~~~~L~~L~l~~~~~ 518 (674)
|++..+.. ..........+++|+.|++.+ +... .++.....+++|++|.+..+..
T Consensus 323 L~L~~~~~------------~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 323 LETRNVIG------------DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp EEEEGGGH------------HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred EeccCccC------------HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 88873211 112223335567888888883 2221 1222234577888888843322
Q ss_pred cccc-CCCCc-ccceeEEeecC---CCcee------cchhHHhhhccccEEEecCCCC-ccccccCCCCCCccccceeee
Q 048755 519 WWSV-GPWDG-ISRKFKLKLTN---GANIC------LNEGHIMQLKGIEDLTLDGLPD-MKNVLCEPGREVFPKLNRLQI 586 (674)
Q Consensus 519 ~~~~-~~~~~-~~~~~~l~~~~---~~~~~------~~~~~~~~l~~L~~L~L~~~~~-~~~~~~~~~~~~l~~L~~L~l 586 (674)
.... ..+.. .+++..|++.+ +.... ....+...+++|+.|++..|.+ +.+.........+++|++|++
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L 470 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLL 470 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEE
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeec
Confidence 1100 00111 22344444431 11111 1122234466677777755442 111111111133566777777
Q ss_pred ccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEecCC
Q 048755 587 EHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCD 648 (674)
Q Consensus 587 ~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~ 648 (674)
.+|. +++..... ....+++|+.|+|++|+ +..... +.....+++|++|++++|.
T Consensus 471 ~~n~-l~~~~~~~-----~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 471 GYVG-ESDEGLME-----FSRGCPNLQKLEMRGCC-FSERAI-AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CSCC-SSHHHHHH-----HHTCCTTCCEEEEESCC-CBHHHH-HHHHHHCSSCCEEEEESCB
T ss_pred cCCC-CCHHHHHH-----HHhcCcccCeeeccCCC-CcHHHH-HHHHHhcCccCeeECcCCc
Confidence 6652 22210000 12345677777777765 322100 1112456777777777765
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.72 E-value=7.2e-17 Score=159.58 Aligned_cols=190 Identities=19% Similarity=0.262 Sum_probs=129.2
Q ss_pred eeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC-
Q 048755 314 SLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD- 391 (674)
Q Consensus 314 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~- 391 (674)
...+..+..+|..+. ++|+.|++++|.+..++...|.++++|++|++++|.+..++ ..+..+++|++|++++|.+..
T Consensus 13 ~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 334455666676543 57888888888888887777788888888888888888764 467788888888888887766
Q ss_pred -cccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCC-CCChhhhhCCCCCCeEEeccCCCccccccccC
Q 048755 392 -IAIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQ-VIPPNVISSLSRLEELYIGQSPIMWGKVGGVD 468 (674)
Q Consensus 392 -~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 468 (674)
+..+..+++|++|++++|.+..++. .+..+++|++|++++|.... .+|.. ++.+++|++|++++|.+....
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~----- 165 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY----- 165 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-----
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCC-----
Confidence 3567788888888888888877664 57788888888888874433 23444 778888888888887662111
Q ss_pred CcccccchhhhcCCCCcc-EEEeeeccCCCCCcccccccCccEEEEE
Q 048755 469 GERRNASLDELNNLSKLT-SLEILIQDEKTLPRDLSFFKMLQRYRIS 514 (674)
Q Consensus 469 ~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~l~~~~~L~~L~l~ 514 (674)
...+..+..++.|. .|++++|....++.......+|+.|+++
T Consensus 166 ----~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 166 ----CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALD 208 (276)
T ss_dssp ----GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECC
T ss_pred ----HHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECC
Confidence 11233344444444 6777777666655544333345555544
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.7e-16 Score=156.96 Aligned_cols=199 Identities=21% Similarity=0.234 Sum_probs=164.6
Q ss_pred ccccceeEeeccccccCCCC-Cc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEE
Q 048755 306 TLKVCTAISLFNTNISELPQ-GF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTL 382 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L 382 (674)
....++.|+++++.+..++. .+ .+++|+.|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 34679999999999988775 33 8899999999999999999888999999999999999999765 678999999999
Q ss_pred EcCCcCCCCc--ccccCcCCccEEecCCCCchh--chHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCC----eEEe
Q 048755 383 SLDFCILGDI--AIIGDLKKLEILTLRGSDMEK--LVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLE----ELYI 454 (674)
Q Consensus 383 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~----~L~l 454 (674)
++++|.+... ..++.+++|++|++++|.+.. +|..+.++++|++|++++| .+..++...+..+++|+ +|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeec
Confidence 9999988773 368899999999999999986 6889999999999999999 45556554466666666 8899
Q ss_pred ccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCccc-ccccCccEEEEEEccc
Q 048755 455 GQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDL-SFFKMLQRYRISIGYD 518 (674)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~~ 518 (674)
++|.+... ........+|+.|++++|....+|..+ ..+++|+.|+++.+..
T Consensus 185 s~n~l~~~-------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 185 SLNPMNFI-------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CSSCCCEE-------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCCccccc-------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 88876311 122223348999999999988888764 8899999999986653
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=5.7e-17 Score=162.65 Aligned_cols=170 Identities=21% Similarity=0.286 Sum_probs=142.5
Q ss_pred CcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEe
Q 048755 326 GFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILT 405 (674)
Q Consensus 326 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 405 (674)
...+++|+.|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++.+..+++|++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 3367899999999998887763 6889999999999999998877 889999999999999998887899999999999
Q ss_pred cCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCc
Q 048755 406 LRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKL 485 (674)
Q Consensus 406 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 485 (674)
+++|.++.++. +..+++|++|++++| .+..++. ++.+++|+.|++++|.+. .+..+..+++|
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~--------------~~~~l~~l~~L 175 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVS--------------DLTPLANLSKL 175 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCC--------------CCGGGTTCTTC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCC--------------CChhhcCCCCC
Confidence 99999988876 889999999999998 4555554 788999999999988762 12227788999
Q ss_pred cEEEeeeccCCCCCcccccccCccEEEEEEcc
Q 048755 486 TSLEILIQDEKTLPRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 486 ~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 517 (674)
+.|++++|....++. +..+++|+.|+++.+.
T Consensus 176 ~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 176 TTLKADDNKISDISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CEEECCSSCCCCCGG-GGGCTTCCEEECTTSC
T ss_pred CEEECCCCccCcChh-hcCCCCCCEEEccCCc
Confidence 999999998877765 7788888888886553
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=3e-17 Score=161.76 Aligned_cols=172 Identities=22% Similarity=0.299 Sum_probs=96.3
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCc--ccccCcCCccEEe
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDI--AIIGDLKKLEILT 405 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~ 405 (674)
.+++|+.|++.+|.+..++. +..+++|++|++++|.+..++ .++.+++|++|++++|.++.. ..++.+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 55566666666655554432 455666666666666665543 455666666666666665552 2345666666666
Q ss_pred cCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCC
Q 048755 406 LRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSK 484 (674)
Q Consensus 406 l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 484 (674)
+++|.++.+|.. +..+++|++|++++| .++.+++..++.+++|++|++++|.+. ......++.+++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~~ 182 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQ------------SLPEGVFDKLTQ 182 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCC------------CCCTTTTTTCTT
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcC------------ccCHHHhcCCcc
Confidence 666666655533 456666666666666 344454444556666666666666541 111223455566
Q ss_pred ccEEEeeeccCCCCCcc-cccccCccEEEEEE
Q 048755 485 LTSLEILIQDEKTLPRD-LSFFKMLQRYRISI 515 (674)
Q Consensus 485 L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~ 515 (674)
|+.|++++|....+++. +..+++|+.|+++.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 66666666655544433 34455555555543
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=1.1e-17 Score=178.98 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=82.3
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCC
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGS 409 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 409 (674)
++|+.|++++|.+..+++..|.++++|++|+|++|.+...++ ++.+++|++|++++|.++.++ ..++|++|++++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N 109 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANN 109 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCC
Confidence 355555555555555555555555555555555555554333 555555555555555544321 1255555555555
Q ss_pred CchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhc-CCCCccEE
Q 048755 410 DMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELN-NLSKLTSL 488 (674)
Q Consensus 410 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 488 (674)
.+..+|. ..+++|++|++++|. +...++..++.+++|++|++++|.+. ...+..+. .+++|+.|
T Consensus 110 ~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~------------~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 110 NISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID------------TVNFAELAASSDTLEHL 174 (487)
T ss_dssp CCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC------------EEEGGGGGGGTTTCCEE
T ss_pred cCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC------------CcChHHHhhhCCcccEE
Confidence 5554443 234555555555553 22332222455555555555555441 11222232 44555555
Q ss_pred EeeeccCCCCCcccccccCccEEEEEE
Q 048755 489 EILIQDEKTLPRDLSFFKMLQRYRISI 515 (674)
Q Consensus 489 ~l~~~~~~~~~~~l~~~~~L~~L~l~~ 515 (674)
++++|....+|.. ..+++|+.|++++
T Consensus 175 ~Ls~N~l~~~~~~-~~l~~L~~L~Ls~ 200 (487)
T 3oja_A 175 NLQYNFIYDVKGQ-VVFAKLKTLDLSS 200 (487)
T ss_dssp ECTTSCCCEEECC-CCCTTCCEEECCS
T ss_pred ecCCCcccccccc-ccCCCCCEEECCC
Confidence 5555554444322 2345555555543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=2e-16 Score=155.78 Aligned_cols=192 Identities=23% Similarity=0.285 Sum_probs=152.7
Q ss_pred cccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEE
Q 048755 305 DTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLS 383 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~ 383 (674)
..++.++.|.+.++.+..++....+++|+.|++++|.+..++ .+..+++|++|++++|.+..+|+ .++.+++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 345778889999998888887778999999999999887764 47889999999999999998764 468899999999
Q ss_pred cCCcCCCC-c-ccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCc
Q 048755 384 LDFCILGD-I-AIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIM 460 (674)
Q Consensus 384 l~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 460 (674)
+++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .++.+++..++.+++|++|++++|.+.
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99998877 3 3478899999999999999888754 588999999999998 455676665788999999999998762
Q ss_pred cccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcc
Q 048755 461 WGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 517 (674)
......++.+++|+.|++.+|... +.+++|+.+.+..+.
T Consensus 195 ------------~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 195 ------------SVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINK 233 (272)
T ss_dssp ------------CCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHH
T ss_pred ------------ccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHh
Confidence 222345678899999999988533 334556666554443
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=7.7e-17 Score=172.28 Aligned_cols=237 Identities=12% Similarity=0.075 Sum_probs=181.6
Q ss_pred ccccceeEeeccccccCCCC-Cc-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEE
Q 048755 306 TLKVCTAISLFNTNISELPQ-GF-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLS 383 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~ 383 (674)
.+++++.|+++++.+..+++ .+ .+++|++|++++|.+...++ +..+++|++|++++|.+..+|. .++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 44689999999999988764 33 89999999999999887766 7999999999999999987764 38999999
Q ss_pred cCCcCCCCcccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccc
Q 048755 384 LDFCILGDIAIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWG 462 (674)
Q Consensus 384 l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 462 (674)
+++|.+..... ..+++|++|++++|.+..++ ..++.+++|++|++++|......|....+.+++|++|++++|.+...
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 99999887422 35789999999999999764 56889999999999999554445544334899999999999987311
Q ss_pred cccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCce
Q 048755 463 KVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANI 542 (674)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 542 (674)
.....+++|+.|++++|....+|+.+..+++|+.|+++++... .+|
T Consensus 185 --------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp------------------- 230 (487)
T 3oja_A 185 --------------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIE------------------- 230 (487)
T ss_dssp --------------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EEC-------------------
T ss_pred --------------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccc-------------------
Confidence 2233589999999999999999999999999999999765422 122
Q ss_pred ecchhHHhhhccccEEEecCCCCcc-ccccCCCCCCccccceeeeccc
Q 048755 543 CLNEGHIMQLKGIEDLTLDGLPDMK-NVLCEPGREVFPKLNRLQIEHN 589 (674)
Q Consensus 543 ~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~ 589 (674)
.. ...+++|+.|++.+|.... .++.. ...+++|+.+.+..+
T Consensus 231 ---~~-l~~l~~L~~L~l~~N~l~c~~~~~~--~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 231 ---KA-LRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTV 272 (487)
T ss_dssp ---TT-CCCCTTCCEEECTTCCBCHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred ---hh-hccCCCCCEEEcCCCCCcCcchHHH--HHhCCCCcEEecccc
Confidence 11 2235777788887776542 22221 245677777776543
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=2e-16 Score=152.71 Aligned_cols=194 Identities=14% Similarity=0.212 Sum_probs=147.0
Q ss_pred ccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCC-CcccCchhhcCCCcceEEEecC-cccCCCC-cccccccCCc
Q 048755 306 TLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDP-SLRISDNIFTGMTELRVLDFTE-MHLLALP-SSLGLLQNLQ 380 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~Lr~L~l~~-~~~~~lp-~~~~~l~~L~ 380 (674)
....++.|++.++.+..++.. + .+++|+.|++++|. +..+++..|.++++|++|++++ +.++.+| ..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 445788888888888877763 3 78888888888886 7778877788888888888888 7888775 4677888888
Q ss_pred EEEcCCcCCCCcccccCcCCcc---EEecCCC-CchhchHh-hcCCCCCc-EEeCCCCCCCCCCChhhhhCCCCCCeEEe
Q 048755 381 TLSLDFCILGDIAIIGDLKKLE---ILTLRGS-DMEKLVEE-MGELTQLR-LLDLSYCFNLQVIPPNVISSLSRLEELYI 454 (674)
Q Consensus 381 ~L~l~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~lp~~-~~~l~~L~-~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 454 (674)
+|++++|.++.++.+..+.+|+ +|++++| .++.+|.. +..+++|+ +|++++| .+..+|...+.. ++|++|++
T Consensus 109 ~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTT-CEEEEEEC
T ss_pred EEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCC-CCCCEEEc
Confidence 8888888887755577777777 8888888 88887754 77888888 8888887 445677654444 78888888
Q ss_pred ccCC-CccccccccCCcccccchhhhcCC-CCccEEEeeeccCCCCCcccccccCccEEEEEE
Q 048755 455 GQSP-IMWGKVGGVDGERRNASLDELNNL-SKLTSLEILIQDEKTLPRDLSFFKMLQRYRISI 515 (674)
Q Consensus 455 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~ 515 (674)
.+|. +. ......+..+ ++|+.|++++|....+|.. .+++|+.|.+..
T Consensus 187 ~~n~~l~------------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 187 NKNKYLT------------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp TTCTTCC------------EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred CCCCCcc------------cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 8884 52 1122445667 7888888888888777765 577788887753
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=6.1e-16 Score=153.51 Aligned_cols=174 Identities=20% Similarity=0.261 Sum_probs=148.0
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCCCCcccccCcCCccEEec
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTL 406 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l 406 (674)
.+++++.++++++....+|... .+++++|++++|.+..+ |..+..+++|++|++++|.++.++..+.+++|++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 84 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence 5678999999999988888765 36899999999999976 5678999999999999999988655689999999999
Q ss_pred CCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCcc
Q 048755 407 RGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLT 486 (674)
Q Consensus 407 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 486 (674)
++|.+..+|..+..+++|++|++++| .++.++++.++.+++|++|++++|.+. ......+..+++|+
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK------------TLPPGLLTPTPKLE 151 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC------------CCCTTTTTTCTTCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC------------ccChhhcccccCCC
Confidence 99999999988999999999999998 566777666899999999999999873 12234467889999
Q ss_pred EEEeeeccCCCCCccc-ccccCccEEEEEEcc
Q 048755 487 SLEILIQDEKTLPRDL-SFFKMLQRYRISIGY 517 (674)
Q Consensus 487 ~L~l~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 517 (674)
.|++++|....+|... ..+++|+.|+++.+.
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 9999999988888764 678899999887554
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.6e-15 Score=149.27 Aligned_cols=178 Identities=24% Similarity=0.339 Sum_probs=152.3
Q ss_pred ccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEE
Q 048755 306 TLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTL 382 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L 382 (674)
....++.|+++++.+..++.. + .+++|+.|++++|.+..++...|.++++|++|++++|.+..+|. .+..+++|++|
T Consensus 35 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 346789999999999888863 3 89999999999999999999989999999999999999998864 56899999999
Q ss_pred EcCCcCCCC--cccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 383 SLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 383 ~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
++++|.+.. +..++.+++|++|++++|.++.+|.. +..+++|++|++++| .+..++...+..+++|++|++++|.+
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence 999998887 34578999999999999999988865 789999999999998 56667766688999999999999977
Q ss_pred ccccccccCCcccccchhhhcCCCCccEEEeeeccCC
Q 048755 460 MWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEK 496 (674)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 496 (674)
.. .....+..+++|+.|++.+|...
T Consensus 194 ~~------------~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 194 KR------------VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp SC------------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc------------CCHHHhccccCCCEEEecCCCee
Confidence 31 12234677899999999988643
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=1.6e-15 Score=147.48 Aligned_cols=176 Identities=22% Similarity=0.346 Sum_probs=141.0
Q ss_pred ccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCC
Q 048755 308 KVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDF 386 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~ 386 (674)
...+.+++.++.+..+|..+. ++++.|++++|.+..+++..|.++++|++|++++|.+..++ ..+..+++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 345678888888888888765 78999999999998888888899999999999999998764 4578899999999999
Q ss_pred cCCCC-c-ccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccc
Q 048755 387 CILGD-I-AIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGK 463 (674)
Q Consensus 387 ~~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 463 (674)
|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++| .+..+++..++.+++|++|++++|.+.
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~--- 168 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQ--- 168 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS---
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCC---
Confidence 98877 3 4567889999999999988888765 578899999999988 556676655788888999998888762
Q ss_pred ccccCCcccccchhhhcCCCCccEEEeeeccCCC
Q 048755 464 VGGVDGERRNASLDELNNLSKLTSLEILIQDEKT 497 (674)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 497 (674)
......+..+++|+.|++.+|....
T Consensus 169 ---------~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 ---------SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ---------ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 1222456677888888888776543
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.2e-16 Score=158.89 Aligned_cols=216 Identities=16% Similarity=0.185 Sum_probs=152.1
Q ss_pred ceeEeeccccccC--CCCCc--------CCCCCcEEEcccCCCcc-cCchhh-cCCCcceEEEecCcccCCCCcccccc-
Q 048755 310 CTAISLFNTNISE--LPQGF--------ECPQLKYFHIRNDPSLR-ISDNIF-TGMTELRVLDFTEMHLLALPSSLGLL- 376 (674)
Q Consensus 310 ~~~l~l~~~~~~~--~~~~~--------~~~~L~~L~l~~~~~~~-~~~~~~-~~~~~Lr~L~l~~~~~~~lp~~~~~l- 376 (674)
++.|++.++.+.. +|... .+++|+.|++++|.+.. ++...| ..+++|++|++++|.+...|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 5666666666532 44333 37888888888888774 444432 77888899999888888777777776
Q ss_pred ----cCCcEEEcCCcCCCC--cccccCcCCccEEecCCCCchh---chHhh--cCCCCCcEEeCCCCCCCCC---CChhh
Q 048755 377 ----QNLQTLSLDFCILGD--IAIIGDLKKLEILTLRGSDMEK---LVEEM--GELTQLRLLDLSYCFNLQV---IPPNV 442 (674)
Q Consensus 377 ----~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~---lp~~~--~~l~~L~~L~l~~~~~~~~---~~~~~ 442 (674)
++|++|++++|.+.. +..++.+++|++|++++|.+.. +|..+ ..+++|++|++++|. ++. ++...
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 223 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSAL 223 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHH
Confidence 888999988888877 3678888889999998887642 35555 788888999888884 442 23333
Q ss_pred hhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEccccccc
Q 048755 443 ISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSV 522 (674)
Q Consensus 443 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 522 (674)
+..+++|++|++++|.+.... ....+..+++|+.|++++|....+|..+. ++|+.|+++.+...
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~--- 287 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAA-----------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD--- 287 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSC-----------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCC---
T ss_pred HhcCCCCCEEECCCCcCCccc-----------chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCC---
Confidence 467788888988888763211 11334456888888888888888887775 77888888755321
Q ss_pred CCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCC
Q 048755 523 GPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLP 564 (674)
Q Consensus 523 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 564 (674)
..+. ...+++|+.|++.+++
T Consensus 288 --------------------~~p~--~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 288 --------------------RNPS--PDELPQVGNLSLKGNP 307 (312)
T ss_dssp --------------------SCCC--TTTSCEEEEEECTTCT
T ss_pred --------------------CChh--HhhCCCCCEEeccCCC
Confidence 1111 3447888999998875
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.66 E-value=5.6e-17 Score=165.47 Aligned_cols=148 Identities=16% Similarity=0.195 Sum_probs=95.7
Q ss_pred CCcEEEcccCCCcccCchhhcCC--CcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC---cccccCcCCccEEe
Q 048755 331 QLKYFHIRNDPSLRISDNIFTGM--TELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD---IAIIGDLKKLEILT 405 (674)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~--~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~ 405 (674)
.++.++++++... +..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. +..+..+++|++|+
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 4667787776543 3445555 77888888888877666566677788888888776653 34566777777777
Q ss_pred cCCCCch-hchHhhcCCCCCcEEeCCCCCCCCC--CChhhhhCCCCCCeEEeccC-CCccccccccCCcccccchhhhcC
Q 048755 406 LRGSDME-KLVEEMGELTQLRLLDLSYCFNLQV--IPPNVISSLSRLEELYIGQS-PIMWGKVGGVDGERRNASLDELNN 481 (674)
Q Consensus 406 l~~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 481 (674)
+++|.+. ..|..+..+++|++|++++|..++. ++ ..+..+++|++|++++| .+. .......+..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~~~L~~L~l~~~~~l~-----------~~~~~~~~~~ 192 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSCSRLDELNLSWCFDFT-----------EKHVQVAVAH 192 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHCTTCCEEECCCCTTCC-----------HHHHHHHHHH
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcCCCCCEEcCCCCCCcC-----------hHHHHHHHHh
Confidence 7777766 5566677777777777777744442 22 22566777777777776 431 1112334555
Q ss_pred CC-CccEEEeeec
Q 048755 482 LS-KLTSLEILIQ 493 (674)
Q Consensus 482 l~-~L~~L~l~~~ 493 (674)
++ +|+.|+++++
T Consensus 193 l~~~L~~L~l~~~ 205 (336)
T 2ast_B 193 VSETITQLNLSGY 205 (336)
T ss_dssp SCTTCCEEECCSC
T ss_pred cccCCCEEEeCCC
Confidence 56 6666666655
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.65 E-value=2.4e-15 Score=149.45 Aligned_cols=170 Identities=25% Similarity=0.343 Sum_probs=106.4
Q ss_pred cccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCC
Q 048755 307 LKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDF 386 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~ 386 (674)
+++++.|++.++.+..++....+++|+.|++++|.+..+++ +.++++|++|++++|.+..+|. +..+++|++|++++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH 121 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence 45566777777766666654466677777777766666555 5666777777777766666543 66666777777776
Q ss_pred cCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccc
Q 048755 387 CILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGG 466 (674)
Q Consensus 387 ~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 466 (674)
|.+..++.+..+++|++|++++|.++.+ ..+..+++|++|++++| .+..+++ +..+++|+.|++++|.+.
T Consensus 122 n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i~------ 191 (291)
T 1h6t_A 122 NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHIS------ 191 (291)
T ss_dssp SCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCC------
T ss_pred CcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcCC------
Confidence 6666665666666677777766666655 34666666666666666 3344433 566666666666666541
Q ss_pred cCCcccccchhhhcCCCCccEEEeeeccCCC
Q 048755 467 VDGERRNASLDELNNLSKLTSLEILIQDEKT 497 (674)
Q Consensus 467 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 497 (674)
.+..+..+++|+.|++++|....
T Consensus 192 --------~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 --------DLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --------BCGGGTTCTTCSEEEEEEEEEEC
T ss_pred --------CChhhccCCCCCEEECcCCcccC
Confidence 11235566666666666665443
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.64 E-value=9.7e-16 Score=152.24 Aligned_cols=186 Identities=22% Similarity=0.220 Sum_probs=154.8
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILG 390 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~ 390 (674)
..+.+....+..+.....+++|+.|++++|.+..++. +..+++|++|++++|.+..+++ ++.+++|++|++++|.+.
T Consensus 27 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 27 IKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred HHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC
Confidence 3344444444444444478899999999998888754 7889999999999999998877 899999999999999999
Q ss_pred CcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCc
Q 048755 391 DIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGE 470 (674)
Q Consensus 391 ~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 470 (674)
.++.+..+++|++|++++|.+..++ .+..+++|++|++++|. +..++ .++.+++|++|++++|.+.
T Consensus 104 ~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~N~l~---------- 169 (291)
T 1h6t_A 104 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDNQIS---------- 169 (291)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG--GGGGCTTCSEEECCSSCCC----------
T ss_pred CChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch--hhccCCCCCEEEccCCccc----------
Confidence 9888999999999999999999875 58899999999999994 45553 3899999999999999762
Q ss_pred ccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEccc
Q 048755 471 RRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYD 518 (674)
Q Consensus 471 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 518 (674)
. ...+..+++|+.|++++|....++. +..+++|+.|+++++..
T Consensus 170 --~--~~~l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 170 --D--IVPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp --C--CGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEE
T ss_pred --c--chhhcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcc
Confidence 1 1127889999999999999888864 88999999999987753
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=8.6e-17 Score=164.08 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=139.1
Q ss_pred ceeEeeccccccCCCCCc-CC--CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCC--CCcccccccCCcEEEc
Q 048755 310 CTAISLFNTNISELPQGF-EC--PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLA--LPSSLGLLQNLQTLSL 384 (674)
Q Consensus 310 ~~~l~l~~~~~~~~~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L~l 384 (674)
.+.++++++.+. +..+ .+ ++++.|++++|.+...++.. ..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 566777766543 2222 33 78899999988777766664 568999999999998873 6777888999999999
Q ss_pred CCcCCCC--cccccCcCCccEEecCCC-Cch--hchHhhcCCCCCcEEeCCCCCCCCCC-ChhhhhCCC-CCCeEEeccC
Q 048755 385 DFCILGD--IAIIGDLKKLEILTLRGS-DME--KLVEEMGELTQLRLLDLSYCFNLQVI-PPNVISSLS-RLEELYIGQS 457 (674)
Q Consensus 385 ~~~~~~~--~~~~~~l~~L~~L~l~~~-~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~-~~~~l~~l~-~L~~L~l~~~ 457 (674)
++|.+.. +..++.+++|++|++++| .++ .++..+.++++|++|++++|..++.. ....++.++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 9998765 567788899999999998 677 47777888999999999998444432 123378888 9999999888
Q ss_pred CCccccccccCCcccccchhhhcCCCCccEEEeeecc-C-CCCCcccccccCccEEEEEEc
Q 048755 458 PIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQD-E-KTLPRDLSFFKMLQRYRISIG 516 (674)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~-~~~~~~l~~~~~L~~L~l~~~ 516 (674)
.... .....+..++.+++|+.|+++++. . ...+..+..+++|+.|+++.|
T Consensus 206 ~~~~---------~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 206 RKNL---------QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGS---------CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred cccC---------CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4200 112334556677888888888776 2 234455566666666666544
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=7e-16 Score=148.86 Aligned_cols=137 Identities=15% Similarity=0.210 Sum_probs=100.9
Q ss_pred ccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcc-cCCCCc-ccccccCCcEEEcCC-cCCCCc--cc
Q 048755 320 ISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMH-LLALPS-SLGLLQNLQTLSLDF-CILGDI--AI 394 (674)
Q Consensus 320 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~-~~~lp~-~~~~l~~L~~L~l~~-~~~~~~--~~ 394 (674)
+..+|. -.++++.|++++|.+..+++..|.++++|++|++++|. +..+++ .+..+++|++|++++ +.++.+ ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 666776 33588888888888888888778888888888888886 777754 677888888888887 677662 45
Q ss_pred ccCcCCccEEecCCCCchhchHhhcCCCCCc---EEeCCCCCCCCCCChhhhhCCCCCC-eEEeccCCC
Q 048755 395 IGDLKKLEILTLRGSDMEKLVEEMGELTQLR---LLDLSYCFNLQVIPPNVISSLSRLE-ELYIGQSPI 459 (674)
Q Consensus 395 ~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~ 459 (674)
+..+++|++|++++|.++.+|. +..+++|+ +|++++|..++.++...+..+++|+ +|++++|.+
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 6677888888888887777775 66666666 7777777555566655466666666 666666654
No 92
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=152.93 Aligned_cols=194 Identities=19% Similarity=0.189 Sum_probs=157.2
Q ss_pred cccceeEeecccccc-CCCCC---cCCCCCcEEEcccCCCcccCchhhcCC-----CcceEEEecCcccCCCC-cccccc
Q 048755 307 LKVCTAISLFNTNIS-ELPQG---FECPQLKYFHIRNDPSLRISDNIFTGM-----TELRVLDFTEMHLLALP-SSLGLL 376 (674)
Q Consensus 307 ~~~~~~l~l~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~Lr~L~l~~~~~~~lp-~~~~~l 376 (674)
..++++|+++++.+. .+|.. ..+++|+.|++++|.+...+ ..+..+ ++|++|++++|.+..++ ..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 578999999999987 56765 37899999999999998884 555666 89999999999999875 789999
Q ss_pred cCCcEEEcCCcCCCC----cccc--cCcCCccEEecCCCCchhch---H-hhcCCCCCcEEeCCCCCCCCCCChhhhhCC
Q 048755 377 QNLQTLSLDFCILGD----IAII--GDLKKLEILTLRGSDMEKLV---E-EMGELTQLRLLDLSYCFNLQVIPPNVISSL 446 (674)
Q Consensus 377 ~~L~~L~l~~~~~~~----~~~~--~~l~~L~~L~l~~~~~~~lp---~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 446 (674)
++|++|++++|.+.. +..+ +.+++|++|++++|.++.++ . .+.++++|++|++++|......|...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999998643 3344 88999999999999998444 3 346889999999999965444433336778
Q ss_pred CCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcc
Q 048755 447 SRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 447 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 517 (674)
++|++|++++|.+. ..+..+. ++|+.|++++|....+|. +..+++|+.|+++++.
T Consensus 253 ~~L~~L~Ls~N~l~-------------~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-------------QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTSCCS-------------SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred CCCCEEECCCCccC-------------hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 99999999999873 2223333 789999999999988876 8889999999986553
No 93
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.60 E-value=3.4e-17 Score=181.03 Aligned_cols=358 Identities=15% Similarity=0.071 Sum_probs=209.5
Q ss_pred cccceeEeeccccc----cCCCCC-------------cCCCCCcEEEcccCCCcccCchhhc-CCCcceEEEecCc-ccC
Q 048755 307 LKVCTAISLFNTNI----SELPQG-------------FECPQLKYFHIRNDPSLRISDNIFT-GMTELRVLDFTEM-HLL 367 (674)
Q Consensus 307 ~~~~~~l~l~~~~~----~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~Lr~L~l~~~-~~~ 367 (674)
.++++.+.+.++.. .-.|.. ..+++|+.|++++|.........+. .+++|++|++++| .+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 46688888887642 111211 1678999999999876654444443 6899999999999 555
Q ss_pred C--CCcccccccCCcEEEcCCcCCCC--cccc----cCcCCccEEecCCCC--ch--hchHhhcCCCCCcEEeCCCCCCC
Q 048755 368 A--LPSSLGLLQNLQTLSLDFCILGD--IAII----GDLKKLEILTLRGSD--ME--KLVEEMGELTQLRLLDLSYCFNL 435 (674)
Q Consensus 368 ~--lp~~~~~l~~L~~L~l~~~~~~~--~~~~----~~l~~L~~L~l~~~~--~~--~lp~~~~~l~~L~~L~l~~~~~~ 435 (674)
. ++.....+++|++|++++|.++. +..+ ..+++|++|++++|. +. .++..+.++++|++|++++|...
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 3 45555689999999999997654 2222 367899999999986 32 44555567899999999999665
Q ss_pred CCCChhhhhCCCCCCeEEeccCCCcccc----------------cc--ccCCcccccchhhhcCCCCccEEEeeeccCCC
Q 048755 436 QVIPPNVISSLSRLEELYIGQSPIMWGK----------------VG--GVDGERRNASLDELNNLSKLTSLEILIQDEKT 497 (674)
Q Consensus 436 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~----------------~~--~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 497 (674)
..++. .+..+++|++|.+..+...... .. .............+..+++|+.|+++++....
T Consensus 225 ~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 225 EKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 55444 3788999999987655320000 00 00000111122223356777888877665321
Q ss_pred --CCcccccccCccEEEEEEcccccccCCCC-cccceeEEeecC--------CCce--ecchhHHhhhccccEEEecCCC
Q 048755 498 --LPRDLSFFKMLQRYRISIGYDWWSVGPWD-GISRKFKLKLTN--------GANI--CLNEGHIMQLKGIEDLTLDGLP 564 (674)
Q Consensus 498 --~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~l~~~~--------~~~~--~~~~~~~~~l~~L~~L~L~~~~ 564 (674)
++..+..+++|++|.+..|..-..++.+. ..+++..|++.+ +... .....+...+++|+.|.+. |.
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ES
T ss_pred HHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cC
Confidence 22224567788888887652111112121 133556665522 1111 1122233346778888554 33
Q ss_pred CccccccCCCCCCccccceeeec-----cccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCcc-ccCC
Q 048755 565 DMKNVLCEPGREVFPKLNRLQIE-----HNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAE-SFSK 638 (674)
Q Consensus 565 ~~~~~~~~~~~~~l~~L~~L~l~-----~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~-~l~~ 638 (674)
.+++.........+|+|+.|++. +|..++..+... .+......+++|+.|++++ .+.... ...+. .+++
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~L~~L~L~~--~l~~~~--~~~l~~~~~~ 457 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-GFGAIVEHCKDLRRLSLSG--LLTDKV--FEYIGTYAKK 457 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH-HHHHHHHHCTTCCEEECCS--SCCHHH--HHHHHHHCTT
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh-HHHHHHhhCCCccEEeecC--cccHHH--HHHHHHhchh
Confidence 33332211111347888888888 555665332100 0000123567888888866 333221 11122 3789
Q ss_pred ccEEEEecCCCcccc-CCch-hhhhcccceeccccc
Q 048755 639 LKTIRVEGCDKLKNV-FPLV-IELTQLRTLELKNVF 672 (674)
Q Consensus 639 L~~L~i~~C~~L~~l-~~~~-~~l~~L~~L~l~~c~ 672 (674)
|++|++++|. +.+. +... ..+++|+.|++++|+
T Consensus 458 L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 458 MEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp CCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred ccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCC
Confidence 9999999986 4332 1222 237999999999986
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=7e-15 Score=138.45 Aligned_cols=176 Identities=20% Similarity=0.337 Sum_probs=143.7
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc-cccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS-LGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 389 (674)
+.+...++.+..+|..+ .++|+.|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 45666777777787665 46899999999999999888889999999999999999988654 68899999999999988
Q ss_pred CC-c-ccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccc
Q 048755 390 GD-I-AIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGG 466 (674)
Q Consensus 390 ~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 466 (674)
+. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++| .++.++...+..+++|+.|++.+|++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~------ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD------ 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee------
Confidence 87 3 3468899999999999999988764 688999999999998 456677666789999999999998651
Q ss_pred cCCcccccchhhhcCCCCccEEEeeecc-CCCCCcccccccC
Q 048755 467 VDGERRNASLDELNNLSKLTSLEILIQD-EKTLPRDLSFFKM 507 (674)
Q Consensus 467 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~l~~~~~ 507 (674)
+.+++|+.|+++.+. .+.+|.+++.++.
T Consensus 162 -------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 245678888888766 4577777655543
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=1.1e-14 Score=158.59 Aligned_cols=174 Identities=26% Similarity=0.349 Sum_probs=142.2
Q ss_pred cccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEc
Q 048755 305 DTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSL 384 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l 384 (674)
..+..++.|++.++.+..++....+++|+.|++++|.+..+++ +..+++|++|+|++|.+..+| .+..+++|++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 3456788888888888888876688999999999998888776 788999999999999888776 6888999999999
Q ss_pred CCcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccc
Q 048755 385 DFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKV 464 (674)
Q Consensus 385 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 464 (674)
++|.+..++.+..+++|+.|++++|.+..+ ..+..+++|++|++++|. +..+++ +..+++|+.|++++|.+.
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~---- 188 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 188 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC----
Confidence 999888887888899999999999988877 468889999999999884 445544 788999999999888762
Q ss_pred cccCCcccccchhhhcCCCCccEEEeeeccCCCCC
Q 048755 465 GGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP 499 (674)
Q Consensus 465 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 499 (674)
.+..+..+++|+.|++++|.....|
T Consensus 189 ----------~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 ----------DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp ----------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred ----------CChHHccCCCCCEEEccCCcCcCCc
Confidence 1245778889999999888754443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=8.7e-15 Score=149.74 Aligned_cols=235 Identities=17% Similarity=0.164 Sum_probs=153.1
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCC-CC-cccccccCCcE-EEcCCc
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLA-LP-SSLGLLQNLQT-LSLDFC 387 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~-lp-~~~~~l~~L~~-L~l~~~ 387 (674)
+.+..+++.+.++|..+ .++++.|++++|.+..++...|.++++|++|+|++|.+.+ +| ..+..+++|+. +.+..+
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 34566777788888766 4688999999999888888888899999999999998754 55 35677877765 445556
Q ss_pred CCCC--cccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCC-CCCeEEeccCCCcccc
Q 048755 388 ILGD--IAIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLS-RLEELYIGQSPIMWGK 463 (674)
Q Consensus 388 ~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~ 463 (674)
.+.. +..+..+++|++|++++|.+..+|. .+....++..|++.++..+..++...+..+. .++.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--- 167 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--- 167 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC---
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc---
Confidence 6666 3557788888888888888877764 3445556777777776666666655444443 4677777777652
Q ss_pred ccccCCcccccchhhhcCCCCccEEEee-eccCCCCCcc-cccccCccEEEEEEcccccccCCCCcccceeEEeecCCCc
Q 048755 464 VGGVDGERRNASLDELNNLSKLTSLEIL-IQDEKTLPRD-LSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGAN 541 (674)
Q Consensus 464 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 541 (674)
..........+|+.|++. ++....+|.. +..+++|+.|+++.+.. ..
T Consensus 168 ----------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l-~~-------------------- 216 (350)
T 4ay9_X 168 ----------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HS-------------------- 216 (350)
T ss_dssp ----------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC-CC--------------------
T ss_pred ----------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc-Cc--------------------
Confidence 111222233467777775 3556666653 36667777776654321 11
Q ss_pred eecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeecc
Q 048755 542 ICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEH 588 (674)
Q Consensus 542 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 588 (674)
.+. ..+.+|+.|.+.++..++.++. ...|++|+.+.+.+
T Consensus 217 --lp~---~~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 217 --LPS---YGLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp --CCS---SSCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred --cCh---hhhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 111 1245666666666666665553 25677777777653
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.58 E-value=4.2e-15 Score=161.98 Aligned_cols=189 Identities=22% Similarity=0.203 Sum_probs=157.7
Q ss_pred ccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCc
Q 048755 308 KVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFC 387 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~ 387 (674)
..+..+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|+|++|.+..+|+ +..+++|++|++++|
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 3444455555555555555578999999999999888764 7889999999999999998876 899999999999999
Q ss_pred CCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccccc
Q 048755 388 ILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGV 467 (674)
Q Consensus 388 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 467 (674)
.+..++.+..+++|++|++++|.+..++ .+..+++|+.|++++|. +..++ .++.+++|+.|++++|.+.
T Consensus 98 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~--~l~~l~~L~~L~Ls~N~l~------- 166 (605)
T 1m9s_A 98 KIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT--VLSRLTKLDTLSLEDNQIS------- 166 (605)
T ss_dssp CCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG--GGGSCTTCSEEECCSSCCC-------
T ss_pred CCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch--hhcccCCCCEEECcCCcCC-------
Confidence 9999889999999999999999999875 48899999999999994 45553 3899999999999999762
Q ss_pred CCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEccc
Q 048755 468 DGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYD 518 (674)
Q Consensus 468 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 518 (674)
. . ..+..+++|+.|++++|.+..++ .+..+++|+.|+++.+..
T Consensus 167 -----~-~-~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 167 -----D-I-VPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp -----C-C-GGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred -----C-c-hhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence 1 1 12788999999999999988874 688999999999986653
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=4.8e-14 Score=144.20 Aligned_cols=236 Identities=18% Similarity=0.162 Sum_probs=125.9
Q ss_pred eEEEecCcccCCCCcccccccCCcEEEcCCcCCCCc--ccccCcCCccEEecCCCCch-hchH-hhcCCCCCcEEeCCCC
Q 048755 357 RVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDI--AIIGDLKKLEILTLRGSDME-KLVE-EMGELTQLRLLDLSYC 432 (674)
Q Consensus 357 r~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~-~lp~-~~~~l~~L~~L~l~~~ 432 (674)
++++.++++++++|..+ ..++++|++++|.++.+ ..+..+++|++|++++|.+. .+|. .+.++++|.++...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56677777788887765 35777777777777763 34667777777777777654 4553 3566777665444443
Q ss_pred CCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeee-ccCCCCCcc-cccc-cCcc
Q 048755 433 FNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILI-QDEKTLPRD-LSFF-KMLQ 509 (674)
Q Consensus 433 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~-l~~~-~~L~ 509 (674)
..+..++++.++.+++|++|++.+|.+..... ..+....++..|++.. +.+..++.. +..+ ..++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------------~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~ 157 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESV 157 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------------CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCE
T ss_pred CcccccCchhhhhccccccccccccccccCCc------------hhhcccchhhhhhhccccccccccccchhhcchhhh
Confidence 45666665556777777777777766521111 1112233455566543 234444432 2222 2455
Q ss_pred EEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccc
Q 048755 510 RYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHN 589 (674)
Q Consensus 510 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 589 (674)
.|+++.+. ....+..... ..+|+.|.+.++..++.++... .+++++|+.|+++++
T Consensus 158 ~L~L~~N~-----------------------i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 158 ILWLNKNG-----------------------IQEIHNSAFN-GTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISRT 212 (350)
T ss_dssp EEECCSSC-----------------------CCEECTTSST-TEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTTS
T ss_pred hhcccccc-----------------------ccCCChhhcc-ccchhHHhhccCCcccCCCHHH-hccCcccchhhcCCC
Confidence 55554332 2222222221 2455555555555555544321 244566666666555
Q ss_pred cCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCccccCCccEEEEe
Q 048755 590 GNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESFSKLKTIRVE 645 (674)
Q Consensus 590 ~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~ 645 (674)
+++.+ ....|.+|+.|.+.++.+++.+| .+..+++|+.+++.
T Consensus 213 -~l~~l---------p~~~~~~L~~L~~l~~~~l~~lP----~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 213 -RIHSL---------PSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLT 254 (350)
T ss_dssp -CCCCC---------CSSSCTTCCEEECTTCTTCCCCC----CTTTCCSCCEEECS
T ss_pred -CcCcc---------ChhhhccchHhhhccCCCcCcCC----CchhCcChhhCcCC
Confidence 34443 22335555555555555555552 23455566655553
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.57 E-value=4.8e-14 Score=136.92 Aligned_cols=153 Identities=23% Similarity=0.371 Sum_probs=135.3
Q ss_pred ccccceeEeeccccccCCCCC-c-CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEE
Q 048755 306 TLKVCTAISLFNTNISELPQG-F-ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTL 382 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L 382 (674)
....++.|+++++.+..++.. + .+++|+.|++++|.+..+++..|.++++|++|++++|.+..+| ..+..+++|++|
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 346889999999999887764 3 8899999999999999999988999999999999999999886 457899999999
Q ss_pred EcCCcCCCCc--ccccCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 383 SLDFCILGDI--AIIGDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 383 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
++++|.++.+ ..+..+++|++|++++|.++.+|. .+..+++|++|++++| .+..++...+..+++|+.|++.+|++
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 9999999883 346889999999999999998886 5889999999999999 55667766689999999999999987
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=1.4e-15 Score=153.02 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=108.2
Q ss_pred CCCCCcEEEcccCCCcccCchhh--cCCCcceEEEecCcccCCC-C----cccccccCCcEEEcCCcCCCC--cccccCc
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIF--TGMTELRVLDFTEMHLLAL-P----SSLGLLQNLQTLSLDFCILGD--IAIIGDL 398 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~l-p----~~~~~l~~L~~L~l~~~~~~~--~~~~~~l 398 (674)
.+++|+.|++++|.+....+..+ ..+++|++|++++|.+... + ..+..+++|++|++++|.+.. +..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 44567777777777665554444 6677777777777777642 2 223457777777777777755 3456677
Q ss_pred CCccEEecCCCCchh---chHh--hcCCCCCcEEeCCCCCCCCCCChh---hhhCCCCCCeEEeccCCCccccccccCCc
Q 048755 399 KKLEILTLRGSDMEK---LVEE--MGELTQLRLLDLSYCFNLQVIPPN---VISSLSRLEELYIGQSPIMWGKVGGVDGE 470 (674)
Q Consensus 399 ~~L~~L~l~~~~~~~---lp~~--~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 470 (674)
++|++|++++|++.. ++.. +..+++|++|++++| .++.++.. .++.+++|++|++++|.+....+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p------ 241 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN------ 241 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC------
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccch------
Confidence 777777777776542 3322 356777777777777 33433321 24566777777777776521100
Q ss_pred ccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEc
Q 048755 471 RRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIG 516 (674)
Q Consensus 471 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~ 516 (674)
.....+..+++|+.|++++|....+|..+. ++|+.|+++.+
T Consensus 242 ---~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 242 ---PSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp ---SCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC
T ss_pred ---hhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC
Confidence 011122223577777777777777776653 56777777544
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.57 E-value=4.4e-14 Score=134.95 Aligned_cols=148 Identities=22% Similarity=0.329 Sum_probs=129.0
Q ss_pred ceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEcCCcC
Q 048755 310 CTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 310 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 388 (674)
.+.++..++.+..+|..+. ++|+.|++++|.+..+.+..|.++++|++|+|++|.+..+|. .+..+++|++|++++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4567788888888888664 899999999999999988888999999999999999998875 46899999999999998
Q ss_pred CCCc--ccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 389 LGDI--AIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 389 ~~~~--~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
++.+ ..+..+++|++|++++|.++.+|..+..+++|++|++++| .+..++...+..+++|+.|++.+|++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 8873 3468899999999999999999999999999999999998 56677766688899999999998876
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=145.50 Aligned_cols=193 Identities=17% Similarity=0.100 Sum_probs=150.7
Q ss_pred ccceeEeeccccccC-CCCC---cCCCCCcEEEcccCCCcccCc----hhhcCCCcceEEEecCcccCCCC-cccccccC
Q 048755 308 KVCTAISLFNTNISE-LPQG---FECPQLKYFHIRNDPSLRISD----NIFTGMTELRVLDFTEMHLLALP-SSLGLLQN 378 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~-~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~ 378 (674)
.+++.|+++++.+.. .|.. ..+++|+.|++++|.+..... ..+..+++|++|++++|.+..++ ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 458899999998763 4443 468999999999998775322 33457999999999999998764 67889999
Q ss_pred CcEEEcCCcCCCC------cccccCcCCccEEecCCCCchhchHh----hcCCCCCcEEeCCCCCCCCCCChhhhhCC--
Q 048755 379 LQTLSLDFCILGD------IAIIGDLKKLEILTLRGSDMEKLVEE----MGELTQLRLLDLSYCFNLQVIPPNVISSL-- 446 (674)
Q Consensus 379 L~~L~l~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~~~~~~~~~~~l~~l-- 446 (674)
|++|++++|.+.. ...++.+++|++|++++|+++.+|.. +..+++|++|++++|......|.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccC
Confidence 9999999998643 12346899999999999999876653 578899999999999655544654 5555
Q ss_pred -CCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcc
Q 048755 447 -SRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGY 517 (674)
Q Consensus 447 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~ 517 (674)
++|++|++++|.+. ..+..+. ++|+.|++++|....+|. +..+++|+.|+++++.
T Consensus 250 ~~~L~~L~Ls~N~l~-------------~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-------------QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSCCC-------------SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCCCC-------------chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 69999999999873 1222232 799999999999888765 6788999999987554
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=1e-15 Score=159.25 Aligned_cols=190 Identities=16% Similarity=0.119 Sum_probs=120.8
Q ss_pred ccCCCCCc-CCCCCcEEEcccCCCcccCc----hhhcCCCcceEEEecCcccCC----CCccc-------ccccCCcEEE
Q 048755 320 ISELPQGF-ECPQLKYFHIRNDPSLRISD----NIFTGMTELRVLDFTEMHLLA----LPSSL-------GLLQNLQTLS 383 (674)
Q Consensus 320 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~----~~~~~~~~Lr~L~l~~~~~~~----lp~~~-------~~l~~L~~L~ 383 (674)
+..++..+ .+++|+.|++++|.+..... ..+..+++|++|+|++|.+.. +|..+ ..+++|++|+
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 34444444 56778888888876655422 225678888888888765442 34333 5678888888
Q ss_pred cCCcCCCC------cccccCcCCccEEecCCCCchh-----chHhhcCC---------CCCcEEeCCCCCCC-CCCCh--
Q 048755 384 LDFCILGD------IAIIGDLKKLEILTLRGSDMEK-----LVEEMGEL---------TQLRLLDLSYCFNL-QVIPP-- 440 (674)
Q Consensus 384 l~~~~~~~------~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l---------~~L~~L~l~~~~~~-~~~~~-- 440 (674)
+++|.+.. +..+..+++|++|++++|.+.. ++..+..+ ++|++|++++|... ..++.
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 88887655 2456677888888888887752 33334444 78888888887433 12221
Q ss_pred hhhhCCCCCCeEEeccCCCccccccccCCcccccchh-hhcCCCCccEEEeeeccC-----CCCCcccccccCccEEEEE
Q 048755 441 NVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLD-ELNNLSKLTSLEILIQDE-----KTLPRDLSFFKMLQRYRIS 514 (674)
Q Consensus 441 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~~~~l~~~~~L~~L~l~ 514 (674)
..+..+++|++|++++|.+... +...... .+..+++|+.|++++|.. ..+|..+..+++|+.|+++
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~--------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPE--------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHH--------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHhCCCcCEEECcCCCCCHh--------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 2256777888888888765100 0011222 566778888888887775 4566667777788888776
Q ss_pred Ecc
Q 048755 515 IGY 517 (674)
Q Consensus 515 ~~~ 517 (674)
.|.
T Consensus 253 ~n~ 255 (386)
T 2ca6_A 253 DCL 255 (386)
T ss_dssp TCC
T ss_pred CCC
Confidence 554
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.55 E-value=1.4e-14 Score=141.52 Aligned_cols=172 Identities=21% Similarity=0.219 Sum_probs=129.8
Q ss_pred ccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcC
Q 048755 306 TLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLD 385 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~ 385 (674)
.+.++..+.+..+.+..++....+++|+.|++++|.+..++ .+..+++|++|++++|.+..+|+ ++.+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 34556666777777777765557888888888888877776 36778888888888888888776 8888888888888
Q ss_pred CcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCcccccc
Q 048755 386 FCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVG 465 (674)
Q Consensus 386 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 465 (674)
+|.++.++.+.. .+|++|++++|.++.++ .+..+++|++|++++| .++.++ . ++.+++|++|++++|.+.
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~-~-l~~l~~L~~L~L~~N~i~----- 163 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIV-M-LGFLSKLEVLDLHGNEIT----- 163 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCG-G-GGGCTTCCEEECTTSCCC-----
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCCh-H-HccCCCCCEEECCCCcCc-----
Confidence 888877555555 88888888888888776 4788888888888888 455554 2 788888888888888762
Q ss_pred ccCCcccccchhhhcCCCCccEEEeeeccCCCCC
Q 048755 466 GVDGERRNASLDELNNLSKLTSLEILIQDEKTLP 499 (674)
Q Consensus 466 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 499 (674)
. ...+..+++|+.|++++|.....|
T Consensus 164 ------~---~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 ------N---TGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp ------B---CTTSTTCCCCCEEEEEEEEEECCC
T ss_pred ------c---hHHhccCCCCCEEeCCCCcccCCc
Confidence 1 145667788888888887755444
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=3.1e-14 Score=132.59 Aligned_cols=125 Identities=20% Similarity=0.291 Sum_probs=58.4
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC--cccccCcCCccEEecC
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLR 407 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~ 407 (674)
++|+.|++++|.+..++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.+.. +..++.+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 34444444444444333 1344445555555544333332 34445555555555554443 3444455555555555
Q ss_pred CCCchh-chHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 408 GSDMEK-LVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 408 ~~~~~~-lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
+|.+.. .|..+..+++|++|++++|..++.++. +..+++|++|++++|.+
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGV 171 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCC
Confidence 554442 344455555555555555532444431 45555555555555543
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=5.4e-14 Score=151.38 Aligned_cols=182 Identities=18% Similarity=0.168 Sum_probs=144.8
Q ss_pred cceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcC
Q 048755 309 VCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 309 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 388 (674)
+++.|++.++.+..+|..+ +++|+.|++++|.+..++ ..+++|++|++++|.++.+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6788999999998888866 488999999999988877 347899999999999999888 655 99999999999
Q ss_pred CCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccC
Q 048755 389 LGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVD 468 (674)
Q Consensus 389 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 468 (674)
++.++. .+++|++|++++|.++.+|. .+++|++|++++| .++.+|. ++ ++|+.|++++|.+...+.
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~~lp~---- 197 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLESLPA---- 197 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCSSCCC----
T ss_pred CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCCchhh----
Confidence 888554 78999999999999998887 6789999999998 4555776 44 899999999998731111
Q ss_pred Ccccccchhhh-cCCCCccEEEeeeccCCCCCcccccccCccEEEEEEccc
Q 048755 469 GERRNASLDEL-NNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYD 518 (674)
Q Consensus 469 ~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 518 (674)
....+ ...+.|+.|++++|.+..+|..+..+++|+.|+++++..
T Consensus 198 ------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 198 ------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred ------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 00011 122334999999999999999998899999999986653
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=6.6e-14 Score=132.71 Aligned_cols=147 Identities=20% Similarity=0.352 Sum_probs=122.5
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~ 389 (674)
+.+...++.+..+|..+. ++++.|++++|.+..+++..|.++++|++|+|++|.+..+ |..+..+++|++|++++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 467778888888887664 7899999999999998888889999999999999999876 77889999999999999988
Q ss_pred CC-c-ccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 390 GD-I-AIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 390 ~~-~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
+. + ..+..+++|++|++++|.+..++ ..+..+++|++|++++| .+..++...+..+++|++|++.+|++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 87 3 33678899999999999888774 56888899999999988 45566665578888888988888876
No 108
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=1.3e-15 Score=158.42 Aligned_cols=158 Identities=12% Similarity=0.133 Sum_probs=93.3
Q ss_pred hcCCCcceEEEecCcccCC-----CCcccccccCCcEEEcCCcCCCC-----ccc-------ccCcCCccEEecCCCCch
Q 048755 350 FTGMTELRVLDFTEMHLLA-----LPSSLGLLQNLQTLSLDFCILGD-----IAI-------IGDLKKLEILTLRGSDME 412 (674)
Q Consensus 350 ~~~~~~Lr~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~-----~~~-------~~~l~~L~~L~l~~~~~~ 412 (674)
+..+++|++|+|++|.+.. ++..+..+++|++|++++|.+.. |.. +..+++|++|++++|.+.
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4667788888888887763 33446677788888888764432 222 256777778888777766
Q ss_pred h-----chHhhcCCCCCcEEeCCCCCCCCCCChhh----hhCC---------CCCCeEEeccCCCccccccccCCccccc
Q 048755 413 K-----LVEEMGELTQLRLLDLSYCFNLQVIPPNV----ISSL---------SRLEELYIGQSPIMWGKVGGVDGERRNA 474 (674)
Q Consensus 413 ~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 474 (674)
. +|..+.++++|++|++++|.. +...... +..+ ++|++|++++|.+... ....
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~--------~~~~ 178 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG--------SMKE 178 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG--------GHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH--------HHHH
Confidence 4 666677777777777777743 2111111 2223 6777777777765100 0111
Q ss_pred chhhhcCCCCccEEEeeeccCC------CCCcccccccCccEEEEEEc
Q 048755 475 SLDELNNLSKLTSLEILIQDEK------TLPRDLSFFKMLQRYRISIG 516 (674)
Q Consensus 475 ~~~~l~~l~~L~~L~l~~~~~~------~~~~~l~~~~~L~~L~l~~~ 516 (674)
....+..+++|+.|++++|.+. -++..+..+++|+.|+++.+
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n 226 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC
Confidence 1234556667777777766544 12224455556666655443
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=3.4e-14 Score=132.33 Aligned_cols=150 Identities=21% Similarity=0.305 Sum_probs=129.2
Q ss_pred cCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCCCchh-chHhhcCCCCCcEEeC
Q 048755 351 TGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEK-LVEEMGELTQLRLLDL 429 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l 429 (674)
..+++|++|+++++.+..+| .+..+++|++|++++|.+..++.+..+++|++|++++|.++. .|..+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 56789999999999999888 789999999999999988888899999999999999999985 6778999999999999
Q ss_pred CCCCCCCCCChhhhhCCCCCCeEEeccCC-CccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcccccccCc
Q 048755 430 SYCFNLQVIPPNVISSLSRLEELYIGQSP-IMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRDLSFFKML 508 (674)
Q Consensus 430 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L 508 (674)
++|......+.. ++.+++|++|++++|. +. .+..+..+++|+.|++++|....++ .+..+++|
T Consensus 120 s~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~--------------~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L 183 (197)
T 4ezg_A 120 SHSAHDDSILTK-INTLPKVNSIDLSYNGAIT--------------DIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKL 183 (197)
T ss_dssp CSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC--------------CCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSC
T ss_pred cCCccCcHhHHH-HhhCCCCCEEEccCCCCcc--------------ccHhhcCCCCCCEEECCCCCCcChH-HhccCCCC
Confidence 999554444444 8999999999999997 41 1236788999999999999988877 78899999
Q ss_pred cEEEEEEcc
Q 048755 509 QRYRISIGY 517 (674)
Q Consensus 509 ~~L~l~~~~ 517 (674)
+.|+++++.
T Consensus 184 ~~L~l~~N~ 192 (197)
T 4ezg_A 184 NQLYAFSQT 192 (197)
T ss_dssp CEEEECBC-
T ss_pred CEEEeeCcc
Confidence 999997654
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=131.02 Aligned_cols=147 Identities=18% Similarity=0.329 Sum_probs=113.6
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccC-chhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEcCCcC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRIS-DNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~ 388 (674)
+.++++++.+..+|..+ ...++.|++++|.+..++ ...|.++++|++|++++|.++.+++ .+..+.+|++|++++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47788888888888755 356788888888888774 4567888888899988888887754 68888888888888888
Q ss_pred CCCc--ccccCcCCccEEecCCCCchhc-hHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 389 LGDI--AIIGDLKKLEILTLRGSDMEKL-VEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 389 ~~~~--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
++.+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++| .++.+++..+..+++|++|++++|++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 8772 4477888888888888888866 456778888888888887 44555444477888888888888775
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=3.6e-13 Score=131.41 Aligned_cols=147 Identities=24% Similarity=0.254 Sum_probs=130.7
Q ss_pred cccccceeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEc
Q 048755 305 DTLKVCTAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSL 384 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l 384 (674)
..+.+++.|++.++.+..++....+++|+.|++++|.+..+++ +.++++|++|++++|.+..+|.... .+|++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 4567899999999999999866699999999999999998887 7999999999999999998876443 99999999
Q ss_pred CCcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 385 DFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 385 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
++|.++.++.+..+++|++|++++|.++.++ .+..+++|++|++++|. +...+ .+..+++|+.|++++|.+
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~--~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG--GLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT--TSTTCCCCCEEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH--HhccCCCCCEEeCCCCcc
Confidence 9999999888999999999999999999887 68999999999999994 44442 388999999999999876
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.47 E-value=7.1e-15 Score=151.21 Aligned_cols=128 Identities=13% Similarity=0.140 Sum_probs=63.3
Q ss_pred CcEEEcccCCCcccCc----hhhcCCC-cceEEEecCcccCCC-Ccccccc-----cCCcEEEcCCcCCCC--ccc----
Q 048755 332 LKYFHIRNDPSLRISD----NIFTGMT-ELRVLDFTEMHLLAL-PSSLGLL-----QNLQTLSLDFCILGD--IAI---- 394 (674)
Q Consensus 332 L~~L~l~~~~~~~~~~----~~~~~~~-~Lr~L~l~~~~~~~l-p~~~~~l-----~~L~~L~l~~~~~~~--~~~---- 394 (674)
|+.|++++|.+...+. ..+.+++ +|++|++++|.+... +..+..+ ++|++|++++|.++. +..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 6666666666555554 4455555 566666666665533 3344443 566666666665543 121
Q ss_pred ccCc-CCccEEecCCCCchhchH-----hhcC-CCCCcEEeCCCCCCCCCCCh---hhhhCCC-CCCeEEeccCCC
Q 048755 395 IGDL-KKLEILTLRGSDMEKLVE-----EMGE-LTQLRLLDLSYCFNLQVIPP---NVISSLS-RLEELYIGQSPI 459 (674)
Q Consensus 395 ~~~l-~~L~~L~l~~~~~~~lp~-----~~~~-l~~L~~L~l~~~~~~~~~~~---~~l~~l~-~L~~L~l~~~~~ 459 (674)
+..+ ++|++|++++|.+...+. .+.. .++|++|++++|........ ..+..++ +|++|++++|.+
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 2233 566666666665553331 1223 24566666666532211110 1123333 566666665554
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.46 E-value=3.2e-13 Score=138.61 Aligned_cols=170 Identities=20% Similarity=0.282 Sum_probs=123.3
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhc-CCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFT-GMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 388 (674)
+.++..++.+..+|..+ ...++.|++++|.+..++...|. ++++|++|+|++|.+..++ ..+..+++|++|++++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 46777777888887755 25678888888888888877776 7888888888888888775 457888888888888888
Q ss_pred CCCc--ccccCcCCccEEecCCCCchhc-hHhhcCCCCCcEEeCCCCCCCCCCChhhh---hCCCCCCeEEeccCCCccc
Q 048755 389 LGDI--AIIGDLKKLEILTLRGSDMEKL-VEEMGELTQLRLLDLSYCFNLQVIPPNVI---SSLSRLEELYIGQSPIMWG 462 (674)
Q Consensus 389 ~~~~--~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~ 462 (674)
+..+ ..+..+.+|++|++++|.+..+ |..+..+++|++|++++| .+..+|...+ ..+++|+.|++++|.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-- 176 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK-- 176 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC--
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC--
Confidence 7762 3577888888888888888866 456778888888888887 5566776544 56788888888887762
Q ss_pred cccccCCcccccchhhhcCCCC--ccEEEeeecc
Q 048755 463 KVGGVDGERRNASLDELNNLSK--LTSLEILIQD 494 (674)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 494 (674)
......+..+++ |+.|++.+|.
T Consensus 177 ----------~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 177 ----------KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----------CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ----------ccCHHHhhhccHhhcceEEecCCC
Confidence 112234445554 3667777664
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=8.5e-14 Score=143.13 Aligned_cols=259 Identities=10% Similarity=0.047 Sum_probs=167.0
Q ss_pred EEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-----ccccccc-CCcEEEcCCcCCCC--cccccCc-----CCc
Q 048755 335 FHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-----SSLGLLQ-NLQTLSLDFCILGD--IAIIGDL-----KKL 401 (674)
Q Consensus 335 L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-----~~~~~l~-~L~~L~l~~~~~~~--~~~~~~l-----~~L 401 (674)
+.++.|......+.++...++|++|++++|.+...+ ..+..++ +|++|++++|.++. +..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 456666666666666676777999999999998765 5677788 89999999998876 4455554 999
Q ss_pred cEEecCCCCchhch-H----hhcCC-CCCcEEeCCCCCCCCCCChhhh----hC-CCCCCeEEeccCCCccccccccCCc
Q 048755 402 EILTLRGSDMEKLV-E----EMGEL-TQLRLLDLSYCFNLQVIPPNVI----SS-LSRLEELYIGQSPIMWGKVGGVDGE 470 (674)
Q Consensus 402 ~~L~l~~~~~~~lp-~----~~~~l-~~L~~L~l~~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~~~~~ 470 (674)
++|++++|.+...+ . .+..+ ++|++|++++|. ++..+...+ .. .++|++|++++|.+.. .
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~--------~ 153 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI--------K 153 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG--------S
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH--------H
Confidence 99999999988544 3 25555 899999999995 455554333 33 3699999999997621 1
Q ss_pred ccccchhhhcCCC-CccEEEeeeccCCCCCc-----ccccc-cCccEEEEEEcccccccCCCCcccceeEEeecCCCcee
Q 048755 471 RRNASLDELNNLS-KLTSLEILIQDEKTLPR-----DLSFF-KMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANIC 543 (674)
Q Consensus 471 ~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~-----~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 543 (674)
........+..++ +|+.|++++|....... .+..+ ++|+.|+++.+.... .....
T Consensus 154 ~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~------------------~~~~~ 215 (362)
T 3goz_A 154 SSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL------------------KSYAE 215 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG------------------SCHHH
T ss_pred HHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh------------------hHHHH
Confidence 1223344556665 99999999998655432 33444 589999987654220 00011
Q ss_pred cchhHHhhhccccEEEecCCCCcccccc--CCCCCCccccceeeeccccCceeeeecCC-CCCCCCCCCCccccccccCc
Q 048755 544 LNEGHIMQLKGIEDLTLDGLPDMKNVLC--EPGREVFPKLNRLQIEHNGNLVRLVDTMD-CTPAPTIAFPLLESLFLRDL 620 (674)
Q Consensus 544 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~L~~L~l~~c 620 (674)
.+..+....++|+.|+|++|........ ......+++|+.|++++|. +..+..... ........+++|+.|++++.
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 2222222245899999998863322110 0112567899999999883 111111100 00002335677888888775
Q ss_pred c
Q 048755 621 R 621 (674)
Q Consensus 621 ~ 621 (674)
.
T Consensus 295 ~ 295 (362)
T 3goz_A 295 E 295 (362)
T ss_dssp B
T ss_pred c
Confidence 3
No 115
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=5.6e-13 Score=143.53 Aligned_cols=181 Identities=18% Similarity=0.229 Sum_probs=129.7
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCC
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGS 409 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~ 409 (674)
.+++.|++++|.+..+|... +++|++|++++|.++.+| +.+++|++|++++|.++.++.+.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCC
Confidence 37889999998888877765 378999999999998888 457899999999998877444444 8999999999
Q ss_pred CchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEE
Q 048755 410 DMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLE 489 (674)
Q Consensus 410 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 489 (674)
.++.+|. .+++|++|++++|. ++.+|. .+++|++|++++|.+.. .+. +. ++|+.|+
T Consensus 131 ~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~-------------lp~-l~--~~L~~L~ 186 (571)
T 3cvr_A 131 QLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTF-------------LPE-LP--ESLEALD 186 (571)
T ss_dssp CCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-------------CCC-CC--TTCCEEE
T ss_pred cCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCC-------------cch-hh--CCCCEEE
Confidence 8888887 68889999999884 455664 57888999998887621 112 33 7888999
Q ss_pred eeeccCCCCCcccccccCc-------cEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecC
Q 048755 490 ILIQDEKTLPRDLSFFKML-------QRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDG 562 (674)
Q Consensus 490 l~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 562 (674)
+++|.+..+|. +.. +| +.|++++|. ....+..+.. +++|+.|+|.+
T Consensus 187 Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-----------------------l~~lp~~l~~-l~~L~~L~L~~ 239 (571)
T 3cvr_A 187 VSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-----------------------ITHIPENILS-LDPTCTIILED 239 (571)
T ss_dssp CCSSCCSSCCC-CC----------CCEEEECCSSC-----------------------CCCCCGGGGG-SCTTEEEECCS
T ss_pred CcCCCCCchhh-HHH--hhhcccccceEEecCCCc-----------------------ceecCHHHhc-CCCCCEEEeeC
Confidence 99888888877 433 55 666665432 2223333433 67777777777
Q ss_pred CCCcccc
Q 048755 563 LPDMKNV 569 (674)
Q Consensus 563 ~~~~~~~ 569 (674)
|......
T Consensus 240 N~l~~~~ 246 (571)
T 3cvr_A 240 NPLSSRI 246 (571)
T ss_dssp SSCCHHH
T ss_pred CcCCCcC
Confidence 7654433
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.43 E-value=3.7e-13 Score=126.57 Aligned_cols=146 Identities=19% Similarity=0.249 Sum_probs=126.2
Q ss_pred ccccceeEeeccccccCCCCCc--CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc-cccccCCcEE
Q 048755 306 TLKVCTAISLFNTNISELPQGF--ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS-LGLLQNLQTL 382 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L 382 (674)
..+++++|+++++.+..++... .+++|+.|++++|.+..++...|.++++|++|++++|.+..+|.. ++.+++|++|
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 3568999999999998888753 899999999999999999998889999999999999999988654 6899999999
Q ss_pred EcCCcCCCC-c-ccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 383 SLDFCILGD-I-AIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 383 ~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++|+.|.+..+.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINKH 177 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHHHC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHHHhC
Confidence 999999887 3 3478899999999999999988865 78899999999999843 24567788888777765
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=7e-13 Score=136.09 Aligned_cols=154 Identities=25% Similarity=0.330 Sum_probs=134.2
Q ss_pred cccccceeEeeccccccCCCCCc---CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCc
Q 048755 305 DTLKVCTAISLFNTNISELPQGF---ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQ 380 (674)
Q Consensus 305 ~~~~~~~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~ 380 (674)
.....++.|++++|.+..++... .+++|+.|++++|.+..+++..|.++++|++|+|++|.+..++. .+..+.+|+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 34566889999999998877653 78999999999999999998889999999999999999998754 688999999
Q ss_pred EEEcCCcCCCC--cccccCcCCccEEecCCCCchhchHhh----cCCCCCcEEeCCCCCCCCCCChhhhhCCCC--CCeE
Q 048755 381 TLSLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLVEEM----GELTQLRLLDLSYCFNLQVIPPNVISSLSR--LEEL 452 (674)
Q Consensus 381 ~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~~----~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~--L~~L 452 (674)
+|++++|.+.. +..+..+++|++|++++|.++.+|..+ ..+++|++|++++| .+..++...+..++. |+.|
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTE
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceE
Confidence 99999999887 467899999999999999999998765 67999999999998 667788766888887 4889
Q ss_pred EeccCCC
Q 048755 453 YIGQSPI 459 (674)
Q Consensus 453 ~l~~~~~ 459 (674)
++.+|++
T Consensus 195 ~l~~N~~ 201 (361)
T 2xot_A 195 YLHNNPL 201 (361)
T ss_dssp ECCSSCE
T ss_pred EecCCCc
Confidence 9999886
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=2.8e-15 Score=162.36 Aligned_cols=119 Identities=17% Similarity=0.206 Sum_probs=65.5
Q ss_pred CCcEEEcCCcCCCCcccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccC
Q 048755 378 NLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQS 457 (674)
Q Consensus 378 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 457 (674)
.|++|++++|.++.++.++.+++|++|++++|.++.+|..++++++|++|++++| .++.+| . ++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~-l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-G-VANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-G-GTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-c-cCCCCCCcEEECCCC
Confidence 3556666666555543466666666666666666666666666666666666665 333344 2 566666666666665
Q ss_pred CCccccccccCCcccccc-hhhhcCCCCccEEEeeeccCCCCCccc----ccccCccEE
Q 048755 458 PIMWGKVGGVDGERRNAS-LDELNNLSKLTSLEILIQDEKTLPRDL----SFFKMLQRY 511 (674)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~l----~~~~~L~~L 511 (674)
.+. ... +..++.+++|+.|++++|....+|+.+ ..+++|+.|
T Consensus 519 ~l~------------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 519 RLQ------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp CCC------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCC------------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 541 111 445555666666666666555444432 224555554
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=1.1e-12 Score=118.80 Aligned_cols=139 Identities=21% Similarity=0.152 Sum_probs=84.9
Q ss_pred CCcceEEEecCcccC--CCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCCCchh-chHhhcCCCCCcEEeC
Q 048755 353 MTELRVLDFTEMHLL--ALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEK-LVEEMGELTQLRLLDL 429 (674)
Q Consensus 353 ~~~Lr~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l 429 (674)
.++|++|++++|.+. .+|..+..+++|++|++++|.+..+..+..+++|++|++++|.+.. +|..+.++++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 355666666666666 5666666666777777776666555566666777777777776665 5555566777777777
Q ss_pred CCCCCCCCCCh-hhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCcc
Q 048755 430 SYCFNLQVIPP-NVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPRD 501 (674)
Q Consensus 430 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 501 (674)
++| .++.++. ..++.+++|++|++++|.+.... ......+..+++|+.|++.++....+|.+
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~---------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN---------DYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST---------THHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH---------HHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 776 3444432 23666777777777766551100 00012456667777777777766666543
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=122.93 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=84.0
Q ss_pred cEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC--cccccccCCcEEEcCCcCCCCc--ccccCcCCccEEecCC
Q 048755 333 KYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP--SSLGLLQNLQTLSLDFCILGDI--AIIGDLKKLEILTLRG 408 (674)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~ 408 (674)
+.++++++....+|... ...+++|++++|.+..++ ..+..+++|++|++++|.++.+ ..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45666666666665543 234567777777766553 2356666777777776666552 3466666666666666
Q ss_pred CCchhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccE
Q 048755 409 SDMEKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTS 487 (674)
Q Consensus 409 ~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 487 (674)
|.++.+|. .+..+++|++|++++|. +..+++..+..+++|++|++++|.+. ...+..+..+++|+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT------------TVAPGAFDTLHSLST 157 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC------------CBCTTTTTTCTTCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC------------EECHHHhcCCCCCCE
Confidence 66665553 35666666666666663 33333333566666666666666541 112234445555555
Q ss_pred EEeeecc
Q 048755 488 LEILIQD 494 (674)
Q Consensus 488 L~l~~~~ 494 (674)
|++.+|.
T Consensus 158 L~L~~N~ 164 (220)
T 2v70_A 158 LNLLANP 164 (220)
T ss_dssp EECCSCC
T ss_pred EEecCcC
Confidence 5555543
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=1.4e-12 Score=123.44 Aligned_cols=122 Identities=16% Similarity=0.273 Sum_probs=63.0
Q ss_pred EEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEcCCcCCCC--cccccCcCCccEEecCCCC
Q 048755 334 YFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLRGSD 410 (674)
Q Consensus 334 ~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~ 410 (674)
.++.+++....+|... .++|++|++++|.+..+|. .+..+++|++|++++|.+.. +..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4555555555555433 2455666666666555433 45555556666666555544 2445555555555555555
Q ss_pred chhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 411 MEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 411 ~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
++.+|.. +..+++|++|++++| .+..+++..+..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcC
Confidence 5555533 345555555555555 23333333345555555555555543
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=1.3e-12 Score=118.20 Aligned_cols=127 Identities=22% Similarity=0.269 Sum_probs=65.5
Q ss_pred CCCcEEEcccCCCc--ccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cc-cccCcCCccEEe
Q 048755 330 PQLKYFHIRNDPSL--RISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IA-IIGDLKKLEILT 405 (674)
Q Consensus 330 ~~L~~L~l~~~~~~--~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~-~~~~l~~L~~L~ 405 (674)
++|+.|++++|.+. .++.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. ++ .+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 33322 34555555555555555544 445555555555555555544 22 223355555555
Q ss_pred cCCCCchhch--HhhcCCCCCcEEeCCCCCCCCCCCh---hhhhCCCCCCeEEeccCCC
Q 048755 406 LRGSDMEKLV--EEMGELTQLRLLDLSYCFNLQVIPP---NVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 406 l~~~~~~~lp--~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~ 459 (674)
+++|.++.+| ..+..+++|++|++++|. +...+. ..+..+++|++|++.+|..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555555544 445555566666665552 233333 2355566666666555544
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=4e-12 Score=121.24 Aligned_cols=149 Identities=21% Similarity=0.304 Sum_probs=109.4
Q ss_pred CCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcCCCCc--ccccCcCCccEEecC
Q 048755 331 QLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCILGDI--AIIGDLKKLEILTLR 407 (674)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~ 407 (674)
..+.++.+++....+|... .++|++|++++|.+..+ |..+..+++|++|++++|.+..+ ..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3456777777777777654 37888888888888876 56678888888888888888763 346788888888888
Q ss_pred CCCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCcc
Q 048755 408 GSDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLT 486 (674)
Q Consensus 408 ~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 486 (674)
+|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++|++++|.+. ......+..+++|+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~------------~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLK------------SIPHGAFDRLSSLT 162 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCC------------CCCTTTTTTCTTCC
T ss_pred CCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCC------------ccCHHHHhCCCCCC
Confidence 8888877754 577888888888887 45577765 678888888888887662 11123456677788
Q ss_pred EEEeeeccCC
Q 048755 487 SLEILIQDEK 496 (674)
Q Consensus 487 ~L~l~~~~~~ 496 (674)
.|++.+|...
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 8887776543
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=2.7e-12 Score=113.46 Aligned_cols=102 Identities=25% Similarity=0.343 Sum_probs=47.0
Q ss_pred cCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-c-ccccCcCCccEEecCCCCchhch--HhhcCCCCCcE
Q 048755 351 TGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-I-AIIGDLKKLEILTLRGSDMEKLV--EEMGELTQLRL 426 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~~~~~~lp--~~~~~l~~L~~ 426 (674)
..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+| ..++.+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 4444455555554444444 334444455555555554443 2 22233455555555555544433 44455555555
Q ss_pred EeCCCCCCCCCCCh---hhhhCCCCCCeEEe
Q 048755 427 LDLSYCFNLQVIPP---NVISSLSRLEELYI 454 (674)
Q Consensus 427 L~l~~~~~~~~~~~---~~l~~l~~L~~L~l 454 (674)
|++++|. +...+. ..++.+++|+.|++
T Consensus 118 L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 118 LDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred EeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 5555552 233332 23455555555544
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.33 E-value=2.3e-12 Score=113.99 Aligned_cols=105 Identities=20% Similarity=0.163 Sum_probs=50.1
Q ss_pred CcceEEEecCcccC--CCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCCCchh-chHhhcCCCCCcEEeCC
Q 048755 354 TELRVLDFTEMHLL--ALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEK-LVEEMGELTQLRLLDLS 430 (674)
Q Consensus 354 ~~Lr~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~l~~L~~L~l~ 430 (674)
++|+.|++++|.+. .+|..++.+++|++|++++|.+.....++.+++|++|++++|.+.. +|..+..+++|++|+++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 34455555555544 4444444555555555555544444444455555555555555544 44444445555555555
Q ss_pred CCCCCCCCC-hhhhhCCCCCCeEEeccCCC
Q 048755 431 YCFNLQVIP-PNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 431 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~ 459 (674)
+|. ++.++ ...++.+++|++|++++|.+
T Consensus 97 ~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 97 GNK-IKDLSTIEPLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp TSC-CCSHHHHGGGGGCTTCCEEECTTCGG
T ss_pred CCc-CCChHHHHHHhhCCCCCEEeCcCCcc
Confidence 542 23322 12244555555555555443
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=2e-12 Score=117.90 Aligned_cols=102 Identities=18% Similarity=0.223 Sum_probs=42.9
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCC-cceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cccc-cCcCCccEE
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMT-ELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IAII-GDLKKLEIL 404 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~-~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~-~~l~~L~~L 404 (674)
.+.+|+.|++++|.+..++. +..+. +|++|++++|.+..+ ..++.+++|++|++++|.++. ++.+ ..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34444444444444443321 12222 444444444444433 334444444444444444443 2122 344444444
Q ss_pred ecCCCCchhchH--hhcCCCCCcEEeCCCC
Q 048755 405 TLRGSDMEKLVE--EMGELTQLRLLDLSYC 432 (674)
Q Consensus 405 ~l~~~~~~~lp~--~~~~l~~L~~L~l~~~ 432 (674)
++++|.+..+|. .+..+++|++|++++|
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 444444444443 3444444444444444
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=5.4e-12 Score=114.98 Aligned_cols=126 Identities=16% Similarity=0.156 Sum_probs=110.1
Q ss_pred ccccceeEeeccccccCCCCCcCCC-CCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCccc-ccccCCcEEE
Q 048755 306 TLKVCTAISLFNTNISELPQGFECP-QLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSL-GLLQNLQTLS 383 (674)
Q Consensus 306 ~~~~~~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~-~~l~~L~~L~ 383 (674)
...+++.|++.++.+..++....+. +|+.|++++|.+..+ ..+.++++|++|++++|.+..+|+.+ +.+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 3567899999999999887766555 999999999999887 45789999999999999999888665 8999999999
Q ss_pred cCCcCCCCc-c--cccCcCCccEEecCCCCchhchHh----hcCCCCCcEEeCCCCC
Q 048755 384 LDFCILGDI-A--IIGDLKKLEILTLRGSDMEKLVEE----MGELTQLRLLDLSYCF 433 (674)
Q Consensus 384 l~~~~~~~~-~--~~~~l~~L~~L~l~~~~~~~lp~~----~~~l~~L~~L~l~~~~ 433 (674)
+++|.+..+ . .+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999999873 3 688999999999999999988874 8889999999988773
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=2.5e-11 Score=112.13 Aligned_cols=122 Identities=20% Similarity=0.312 Sum_probs=75.4
Q ss_pred EEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCc--ccccCcCCccEEecCCCCc
Q 048755 334 YFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDI--AIIGDLKKLEILTLRGSDM 411 (674)
Q Consensus 334 ~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~~~~ 411 (674)
+++++++.+..+|... .++|++|++++|.+..+|..+..+.+|++|++++|.++.+ ..+..+++|++|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444444444444332 2356666666666666666666666666666666666552 3466666777777777766
Q ss_pred hhchH-hhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 412 EKLVE-EMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 412 ~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
+.++. .+..+++|++|++++| .+..++...+..+++|+.|++.+|++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCe
Confidence 66553 4666777777777776 44555555566777777777777665
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=6e-12 Score=140.74 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=91.7
Q ss_pred ccceeEeeccccccCCCCCc-CCCCCcEEEccc-----CCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcE
Q 048755 308 KVCTAISLFNTNISELPQGF-ECPQLKYFHIRN-----DPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQT 381 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~-----~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~ 381 (674)
..++.+++.++.+...+... ...+|+.+.+.. |... +++..|..+..|++|+|++|.+..+|..+..+.+|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 45677777777766555433 333333333322 2222 5566678888899999999888888888888889999
Q ss_pred EEcCCcCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCc
Q 048755 382 LSLDFCILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIM 460 (674)
Q Consensus 382 L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 460 (674)
|+|++|.++. |..++.+++|++|+|++|.++.+|..++++++|++|++++| .++.+|.. ++.+++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCccC
Confidence 9999888877 56788889999999999888888888888889999999888 55678776 888889999999888774
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=2.7e-11 Score=111.98 Aligned_cols=121 Identities=18% Similarity=0.288 Sum_probs=67.0
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCch-hhcCCCcceEEEecCcccCCC-CcccccccCCcEEEcCCcC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDN-IFTGMTELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~ 388 (674)
+.++++++.+..+|..+. .+++.|++++|.+..+++. .|..+++|++|++++|.++.+ |..++.+.+|++|++++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 456666666666665442 2566666666665555543 355566666666666666544 4455556666666666655
Q ss_pred CCC--cccccCcCCccEEecCCCCchhc-hHhhcCCCCCcEEeCCCC
Q 048755 389 LGD--IAIIGDLKKLEILTLRGSDMEKL-VEEMGELTQLRLLDLSYC 432 (674)
Q Consensus 389 ~~~--~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~ 432 (674)
++. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 554 12345555555555555555533 334445555555555554
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.9e-11 Score=110.82 Aligned_cols=122 Identities=20% Similarity=0.309 Sum_probs=107.6
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~ 389 (674)
+.++++++.+..+|..+ .++|+.|++++|.+..++ ..|.++++|++|++++|.++.++ ..+..+.+|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 56788888999999765 379999999999998887 56799999999999999999885 5689999999999999999
Q ss_pred CC--cccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCCCC
Q 048755 390 GD--IAIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCFN 434 (674)
Q Consensus 390 ~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 434 (674)
+. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 87 35688999999999999999998864 78899999999998853
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=2.6e-11 Score=112.12 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=87.8
Q ss_pred cEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc--cccccCCcEEEcCCcCCCC--cccccCcCCccEEecCC
Q 048755 333 KYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS--LGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLRG 408 (674)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~--~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~ 408 (674)
++++++++....+|...+ .+|++|++++|.+..++.. ++.+++|++|++++|.++. +..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 577777777777776542 3778888888888777643 7778888888888887766 35677788888888888
Q ss_pred CCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 409 SDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 409 ~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
|.++.++.. +..+++|++|++++|. +..+++..++.+++|++|++++|++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 877766643 6777888888887774 3334333367777777777777765
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=8.5e-11 Score=107.13 Aligned_cols=121 Identities=19% Similarity=0.318 Sum_probs=67.2
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc-cccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS-LGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 389 (674)
+.+.+.++.+..+|..+ .++|+.|++++|.+..+++..|.++++|++|++++|.+..+|.. ++.+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 44555666666666433 25666666666666666655556666666666666666655433 45556666666666555
Q ss_pred CC-c-ccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCC
Q 048755 390 GD-I-AIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYC 432 (674)
Q Consensus 390 ~~-~-~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 432 (674)
+. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 54 2 2234555555555555555554433 244555555555554
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=2.9e-12 Score=143.28 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=93.6
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cccccCcCCccEEec
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTL 406 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l 406 (674)
.+++|+.|++++|.+..++...+ ++++|++|+|++|.+..+|..++.|.+|++|+|++|.++. |..++.+.+|++|+|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEEC
T ss_pred cCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEEC
Confidence 77888899999888888877764 7888999999999888888888899999999999998877 677888899999999
Q ss_pred CCCCchhchHhhcCCCCCcEEeCCCCCCCCCCC
Q 048755 407 RGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIP 439 (674)
Q Consensus 407 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 439 (674)
++|.+..+|..++++++|++|++++|......|
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH
T ss_pred CCCCCCccChhhhcCCCccEEeCCCCccCCCCh
Confidence 999888888888889999999999885444444
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=8.1e-11 Score=127.39 Aligned_cols=101 Identities=25% Similarity=0.273 Sum_probs=75.6
Q ss_pred cceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCC
Q 048755 355 ELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCF 433 (674)
Q Consensus 355 ~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~ 433 (674)
.|++|++++|.++.+|. ++.+++|++|++++|.++. |..++.+++|++|++++|.++.+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N- 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN- 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-
Confidence 47778888887777776 7777788888888777766 567777788888888888777777 6777888888888777
Q ss_pred CCCCC--ChhhhhCCCCCCeEEeccCCC
Q 048755 434 NLQVI--PPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 434 ~~~~~--~~~~l~~l~~L~~L~l~~~~~ 459 (674)
.++.+ |.. ++.+++|+.|++++|.+
T Consensus 519 ~l~~~~~p~~-l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 519 RLQQSAAIQP-LVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CCCSSSTTGG-GGGCTTCCEEECTTSGG
T ss_pred CCCCCCCcHH-HhcCCCCCEEEecCCcC
Confidence 34444 444 77788888888877776
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=3.3e-10 Score=103.22 Aligned_cols=124 Identities=23% Similarity=0.366 Sum_probs=94.2
Q ss_pred CcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEcCCcCCCCc--ccccCcCCccEEecCC
Q 048755 332 LKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSLDFCILGDI--AIIGDLKKLEILTLRG 408 (674)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~ 408 (674)
.+.++++++....++... .++|++|++++|.+..+|. .++.+++|++|++++|.++.+ ..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456777777777777544 3678888888888887754 467888888888888887773 3367888888888888
Q ss_pred CCchhchHh-hcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 409 SDMEKLVEE-MGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 409 ~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
|.++.+|.. +..+++|++|++++| .++.++...+..+++|++|++++|++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 888877754 577888888888887 45567766567788888888888775
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=1.7e-12 Score=120.80 Aligned_cols=103 Identities=18% Similarity=0.265 Sum_probs=57.9
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecC
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLR 407 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~ 407 (674)
.+++|+.|++++|.+..++ .+.++++|++|++++|.+..+|..+..+++|++|++++|.++.++.+..+++|++|+++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES
T ss_pred cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC
Confidence 4555666666655555544 34555666666666666555555555555666666666555554445555556666665
Q ss_pred CCCchhchH--hhcCCCCCcEEeCCCC
Q 048755 408 GSDMEKLVE--EMGELTQLRLLDLSYC 432 (674)
Q Consensus 408 ~~~~~~lp~--~~~~l~~L~~L~l~~~ 432 (674)
+|.++.+|. .+..+++|++|++++|
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 555554442 4555555555555555
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.09 E-value=2e-12 Score=120.33 Aligned_cols=125 Identities=18% Similarity=0.286 Sum_probs=94.7
Q ss_pred CCcEEEcccC--CCcccCchhhcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC-cccccCcCCccEEecC
Q 048755 331 QLKYFHIRND--PSLRISDNIFTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTLR 407 (674)
Q Consensus 331 ~L~~L~l~~~--~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~ 407 (674)
.++...+.+. .+..++. .+..+++|++|++++|.+..+| .+..+++|++|++++|.+.. +..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3444455442 2333333 5688999999999999988888 88889999999999998877 4555667889999999
Q ss_pred CCCchhchHhhcCCCCCcEEeCCCCCCCCCCCh-hhhhCCCCCCeEEeccCCC
Q 048755 408 GSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPP-NVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 408 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 459 (674)
+|.++.+| .+..+++|++|++++|. +..++. ..+..+++|++|++.+|.+
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence 99888877 57888899999998884 444443 3478888899999888875
No 139
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.07 E-value=2.8e-09 Score=111.51 Aligned_cols=217 Identities=18% Similarity=0.121 Sum_probs=130.0
Q ss_pred CCCCcHHHHHHHHHHhhhhc---ccCc-eEEEEEecCCcCHHHHHHHHHHHhCCCCcc--cchHHHHHHHHHHHH-cCCc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN---NLFE-KVISSRVSQTPQIKEIQREIAEKLGLKIDE--ESETVRAWRLLEQLK-KETK 73 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~---~~F~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~-~~kr 73 (674)
.+|+||||||++++++.... ..|. .++|+++....+...++++|+++++..... .........+.+.+. .+++
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 139 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHY 139 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCe
Confidence 47999999999999987643 1232 378888877788999999999999765332 122233334444443 3579
Q ss_pred EEEEEeCCCCcc--------chhhccCCcCCC---C--CCeEEEEEeCChhhhh--------ccCCCcceEecCCCCHHH
Q 048755 74 ILIILDDIWGSL--------DLEAIGIPVADD---N--GGCKVLLTARSQDVLS--------CKMDCQQNFVVDVLNEKE 132 (674)
Q Consensus 74 ~LlVlDdv~~~~--------~~~~l~~~~~~~---~--~gs~ilvTtr~~~~~~--------~~~~~~~~~~l~~L~~~~ 132 (674)
++||+||++... .+..+...+... + .+..+|+||+...... ........+.+++++.++
T Consensus 140 ~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRE 219 (412)
T ss_dssp EEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred EEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHH
Confidence 999999997632 222222222111 2 3455777887554221 001112239999999999
Q ss_pred HHHHHHHHhC-CCCCCCchhHHHHHHHHHhC------CchhhHHHHHHHHh------cC---ChHHHHHHHHHhcccccc
Q 048755 133 AWSLFKKMTG-DCIENGELKSVATEVVKECA------GLPIAIVPVAKALK------NK---SLYEWRNALRQLKRPFLR 196 (674)
Q Consensus 133 ~~~lf~~~~~-~~~~~~~~~~~~~~i~~~c~------g~Plal~~~~~~l~------~~---~~~~w~~~l~~l~~~~~~ 196 (674)
++++|..++. .........+....+++.++ |.|..+..++.... +. +...+...+.....
T Consensus 220 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---- 295 (412)
T 1w5s_A 220 LYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---- 295 (412)
T ss_dssp HHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc----
Confidence 9999976643 10111223567889999999 99976655543321 11 33444444333210
Q ss_pred CCCcccccceeeeeeecccCCChHHHHHHHHHhccc
Q 048755 197 SFSGTQAVAAYSTIELSYYQLEGEELRRTFLLIGYA 232 (674)
Q Consensus 197 ~~~~~~~~~~~~~l~~s~~~L~~~~l~~~f~~~a~f 232 (674)
...+.-.+..|+.. .+.++..++.+
T Consensus 296 ----------~~~~~~~l~~l~~~-~~~~l~aia~l 320 (412)
T 1w5s_A 296 ----------ASIQTHELEALSIH-ELIILRLIAEA 320 (412)
T ss_dssp --------------CCSSSSSCHH-HHHHHHHHHHH
T ss_pred ----------cchHHHHHHcCCHH-HHHHHHHHHHH
Confidence 12344567788887 58887777754
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=1.2e-09 Score=110.41 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=110.6
Q ss_pred CCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCC----CCc--ccc------
Q 048755 329 CPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCIL----GDI--AII------ 395 (674)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~----~~~--~~~------ 395 (674)
|++|+.+.+.. .+..++...|.+|.+|+.+++.++.+..++ ..+..+.++.++....... ..+ ..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888887 777788888888888888888888776653 4455666666665544100 000 000
Q ss_pred --------------------------------------------cCcCCccEEecCCCCchhchH-hhcCCCCCcEEeCC
Q 048755 396 --------------------------------------------GDLKKLEILTLRGSDMEKLVE-EMGELTQLRLLDLS 430 (674)
Q Consensus 396 --------------------------------------------~~l~~L~~L~l~~~~~~~lp~-~~~~l~~L~~L~l~ 430 (674)
..+.+|+.+++++|+++.+|. .+.++.+|+.+++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 026678888888777777774 46777788888877
Q ss_pred CCCCCCCCChhhhhCCCCCC-eEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeeccCCCCCc-ccccccCc
Q 048755 431 YCFNLQVIPPNVISSLSRLE-ELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLPR-DLSFFKML 508 (674)
Q Consensus 431 ~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~~~~L 508 (674)
.+ +..++...+..+++|+ .+.+.. .+ .......+.++++|+.+++..+....++. .+.++++|
T Consensus 259 ~n--i~~I~~~aF~~~~~L~~~l~l~~-~l------------~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 259 HN--LKTIGQRVFSNCGRLAGTLELPA-SV------------TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEECT-TC------------CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred cc--cceehHHHhhCChhccEEEEEcc-cc------------eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 75 6667766677788887 777755 22 11123456677788888877777666655 45677777
Q ss_pred cEEE
Q 048755 509 QRYR 512 (674)
Q Consensus 509 ~~L~ 512 (674)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 7664
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=1e-09 Score=99.28 Aligned_cols=101 Identities=21% Similarity=0.349 Sum_probs=55.2
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc-cccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS-LGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 389 (674)
+.++++++.+..+|..+. ++|+.|++++|.+..+++..|.++++|++|+|++|.+..+|.. +..+++|++|++++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 455666666666665443 5566666666666555555555566666666666665555443 34555555555555555
Q ss_pred CC-cc-cccCcCCccEEecCCCCch
Q 048755 390 GD-IA-IIGDLKKLEILTLRGSDME 412 (674)
Q Consensus 390 ~~-~~-~~~~l~~L~~L~l~~~~~~ 412 (674)
.. +. .+..+++|++|++++|.+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ceeCHHHhccccCCCEEEeCCCCcc
Confidence 44 22 2444555555555555444
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.9e-09 Score=97.51 Aligned_cols=100 Identities=22% Similarity=0.386 Sum_probs=54.9
Q ss_pred eEEEecCcccCCCCcccccccCCcEEEcCCcCCCC--cccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCCC
Q 048755 357 RVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYCF 433 (674)
Q Consensus 357 r~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~ 433 (674)
+.++++++.+..+|..+. .+|++|++++|.+.. +..+..+++|++|++++|+++.+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N- 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN- 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-
Confidence 445555555555555442 555555555555544 23455556666666666666555543 355666666666665
Q ss_pred CCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 434 NLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 434 ~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
.+..++...++.+++|+.|++++|++
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 34445444455566666666665554
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.98 E-value=1.9e-09 Score=97.18 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=61.4
Q ss_pred ceEEEecCcccCCCCcccccccCCcEEEcCCcCCCC--cccccCcCCccEEecCCCCchhchHh-hcCCCCCcEEeCCCC
Q 048755 356 LRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLVEE-MGELTQLRLLDLSYC 432 (674)
Q Consensus 356 Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~ 432 (674)
.++++++++.+..+|..+. .+|++|++++|.++. +..+..+++|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3456666666666665442 566666666666655 23456666666666666666666543 456666777776666
Q ss_pred CCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 433 FNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 433 ~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
.+..++...++.+++|++|++++|++
T Consensus 89 -~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 -QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 44455554466666666666666654
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.94 E-value=4.1e-09 Score=95.01 Aligned_cols=100 Identities=21% Similarity=0.340 Sum_probs=59.2
Q ss_pred eeEeeccccccCCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCcc-cccccCCcEEEcCCcCC
Q 048755 311 TAISLFNTNISELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPSS-LGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 311 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~l~~~~~ 389 (674)
+.++++++.+..+|..+. ++|+.|++++|.+..+++..|.++++|++|+|++|.++.+|+. +..+++|++|++++|.+
T Consensus 12 ~~l~~s~n~l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 456666666666665542 5666666666666666655566666666666666666655443 35566666666666655
Q ss_pred CC-c-ccccCcCCccEEecCCCCc
Q 048755 390 GD-I-AIIGDLKKLEILTLRGSDM 411 (674)
Q Consensus 390 ~~-~-~~~~~l~~L~~L~l~~~~~ 411 (674)
+. + ..+..+++|++|++++|.+
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCC
Confidence 54 2 2345555555555555544
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1.3e-09 Score=110.26 Aligned_cols=284 Identities=10% Similarity=-0.043 Sum_probs=157.6
Q ss_pred CCcceEEEecCcccCCCCccccc-ccCCcEEEcCCcCCCCc-ccccCcCCccEEecCCCCchhch-HhhcC--------C
Q 048755 353 MTELRVLDFTEMHLLALPSSLGL-LQNLQTLSLDFCILGDI-AIIGDLKKLEILTLRGSDMEKLV-EEMGE--------L 421 (674)
Q Consensus 353 ~~~Lr~L~l~~~~~~~lp~~~~~-l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp-~~~~~--------l 421 (674)
+.+++.|.++++--..-...+.. +.+|++|+|++|.+... ..-+.++.+..+.+..+ .+| ..+.. +
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence 55678888876421111122233 78899999999987731 11122233344444443 344 23556 8
Q ss_pred CCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEEeeecc----CCC
Q 048755 422 TQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLEILIQD----EKT 497 (674)
Q Consensus 422 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~----~~~ 497 (674)
++|+.|++.. .++.++...+..+++|+++.+..+.+.... ...+..+.++..+...... ...
T Consensus 101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~------------~~aF~~~~~l~~l~~~~~~~~~~~~~ 166 (329)
T 3sb4_A 101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLL------------PEALADSVTAIFIPLGSSDAYRFKNR 166 (329)
T ss_dssp TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEEC------------TTSSCTTTCEEEECTTCTHHHHTSTT
T ss_pred CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccc------------hhhhcCCCceEEecCcchhhhhcccc
Confidence 8888888887 566777777888888999888877652111 1222333444444433211 111
Q ss_pred CC-cccccccCcc-EEEEEEccccccc--CCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCCCccccccCC
Q 048755 498 LP-RDLSFFKMLQ-RYRISIGYDWWSV--GPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEP 573 (674)
Q Consensus 498 ~~-~~l~~~~~L~-~L~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~ 573 (674)
+. ..+..+..|+ .+.+......... .......++..+...+.........+...+++|+.++|.++. ++.++...
T Consensus 167 i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~a 245 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFT 245 (329)
T ss_dssp TTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTT
T ss_pred ccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cceecHhh
Confidence 11 1223444444 2222111100000 000001122222222111111122233347899999999765 55555432
Q ss_pred CCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccc-cccccCcccccccccCCCCccccCCccEEEEecCCCccc
Q 048755 574 GREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLE-SLFLRDLRNLEEICCGPLTAESFSKLKTIRVEGCDKLKN 652 (674)
Q Consensus 574 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~ 652 (674)
..++++|+.|.+.+. ++.++.. ....+++|+ .+.+.+ +++.+. +..+..+++|+.|++.. .+++.
T Consensus 246 -F~~~~~L~~l~l~~n--i~~I~~~------aF~~~~~L~~~l~l~~--~l~~I~--~~aF~~c~~L~~l~l~~-n~i~~ 311 (329)
T 3sb4_A 246 -FAQKKYLLKIKLPHN--LKTIGQR------VFSNCGRLAGTLELPA--SVTAIE--FGAFMGCDNLRYVLATG-DKITT 311 (329)
T ss_dssp -TTTCTTCCEEECCTT--CCEECTT------TTTTCTTCCEEEEECT--TCCEEC--TTTTTTCTTEEEEEECS-SCCCE
T ss_pred -hhCCCCCCEEECCcc--cceehHH------HhhCChhccEEEEEcc--cceEEc--hhhhhCCccCCEEEeCC-CccCc
Confidence 377999999999874 7777432 223466787 888876 677774 34567889999999876 67999
Q ss_pred cCCchhh-hhcccceec
Q 048755 653 VFPLVIE-LTQLRTLEL 668 (674)
Q Consensus 653 l~~~~~~-l~~L~~L~l 668 (674)
+++.... +++|+.|+.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 9776555 889998864
No 146
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.92 E-value=7.1e-09 Score=105.82 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=103.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc------CHHHHHHHHHHHhCCC-----------------Cc-ccc
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP------QIKEIQREIAEKLGLK-----------------ID-EES 56 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~------~~~~~~~~i~~~l~~~-----------------~~-~~~ 56 (674)
++|+|||||+++++++. .++|+++.... +...+.+.+.+.+... .. ...
T Consensus 39 ~~G~GKT~Ll~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNER-------PGILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKL 111 (350)
T ss_dssp CTTSSHHHHHHHHHHHS-------SEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGC
T ss_pred CCcCCHHHHHHHHHHHc-------CcEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccc
Confidence 47999999999999864 16788876543 5667777777665420 00 011
Q ss_pred hHHHHHHHHHHHH-cCCcEEEEEeCCCCccc---------hhhccCCcCCCCCCeEEEEEeCChhhhhc----------c
Q 048755 57 ETVRAWRLLEQLK-KETKILIILDDIWGSLD---------LEAIGIPVADDNGGCKVLLTARSQDVLSC----------K 116 (674)
Q Consensus 57 ~~~~~~~~~~~l~-~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~gs~ilvTtr~~~~~~~----------~ 116 (674)
........+.... ..++++||+||++...+ +..+. .+.....+.++|+|++....... .
T Consensus 112 ~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l 190 (350)
T 2qen_A 112 SLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA-YAYDSLPNLKIILTGSEVGLLHDFLKITDYESPL 190 (350)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH-HHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTT
T ss_pred hHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH-HHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCcc
Confidence 1122222222222 22389999999976432 12221 11111247789999887643110 0
Q ss_pred C-CCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh
Q 048755 117 M-DCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALK 176 (674)
Q Consensus 117 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~ 176 (674)
. .....+.+.+|+.+|+.+++...+..... ....+.+..++..++|+|+++..++..+.
T Consensus 191 ~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~~~~~~~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVPENEIEEAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp TTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 1 12347899999999999999876531111 12245788999999999999999987653
No 147
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.86 E-value=1.1e-08 Score=104.74 Aligned_cols=167 Identities=13% Similarity=0.145 Sum_probs=100.9
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-----cCHHHHHHHHHHHhCC-------------C-------Cc--
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-----PQIKEIQREIAEKLGL-------------K-------ID-- 53 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-----~~~~~~~~~i~~~l~~-------------~-------~~-- 53 (674)
.+|+|||||+++++++... .++|+++... .+...+.+.+.+.+.. . ..
T Consensus 38 ~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~ 112 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEI 112 (357)
T ss_dssp STTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSE
T ss_pred CCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEE
Confidence 4799999999999987642 2588887643 3445555555444310 0 00
Q ss_pred ccc----hHHHHHHHHHHHHc-C-CcEEEEEeCCCCcc-----chhhccCCcCCCCCCeEEEEEeCChhhhhc-------
Q 048755 54 EES----ETVRAWRLLEQLKK-E-TKILIILDDIWGSL-----DLEAIGIPVADDNGGCKVLLTARSQDVLSC------- 115 (674)
Q Consensus 54 ~~~----~~~~~~~~~~~l~~-~-kr~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~------- 115 (674)
... .......+.+.+.. . ++++||+||++... ++..+...+.....+.++|+|++.......
T Consensus 113 ~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~ 192 (357)
T 2fna_A 113 KFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDP 192 (357)
T ss_dssp EEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCT
T ss_pred EeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCC
Confidence 000 01112334444432 1 49999999997632 222222222122246789999997643210
Q ss_pred ---cCC-CcceEecCCCCHHHHHHHHHHHhCC-CCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh
Q 048755 116 ---KMD-CQQNFVVDVLNEKEAWSLFKKMTGD-CIENGELKSVATEVVKECAGLPIAIVPVAKALK 176 (674)
Q Consensus 116 ---~~~-~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~ 176 (674)
..+ ....+.+.+|+.+++.+++...+.. ...... ...++..++|+|+++..++..+.
T Consensus 193 ~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 193 ESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp TSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHc
Confidence 011 1357899999999999999876531 111111 27899999999999999988765
No 148
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.79 E-value=5.7e-08 Score=100.44 Aligned_cols=189 Identities=12% Similarity=0.083 Sum_probs=115.0
Q ss_pred CCCCcHHHHHHHHHHhhhhcc----c--CceEEEEEecCCc-CHHHHHHHHHHHh-CCCCc--ccchHHHHHHHHHHHHc
Q 048755 1 MGGIGKTTLVKEVGRQAKENN----L--FEKVISSRVSQTP-QIKEIQREIAEKL-GLKID--EESETVRAWRLLEQLKK 70 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~----~--F~~~~wv~~~~~~-~~~~~~~~i~~~l-~~~~~--~~~~~~~~~~~~~~l~~ 70 (674)
.+|+||||+|+++++...... . ...++|++++... +...++.++++.+ +.... ..........+.+.+..
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~ 132 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN 132 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc
Confidence 479999999999999875431 1 2357888887776 8889999999887 32211 22223344455555554
Q ss_pred CCcEEEEEeCCCCccc---hhhccCCcCCCCCCeEEEEEeCChhhh----hc-cCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 71 ETKILIILDDIWGSLD---LEAIGIPVADDNGGCKVLLTARSQDVL----SC-KMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~gs~ilvTtr~~~~~----~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
++.+|||||++.... .+.+...+.....+.++|+||+..... .. .......+.+++++.++..+++..++.
T Consensus 133 -~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 133 -IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp -SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred -CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 344999999976421 111011111111678888898875321 00 012224899999999999999998753
Q ss_pred -CCCCCCchhHHHHHHHHHhC---Cchhh-HHHHHHHHh------cCChHHHHHHHHHh
Q 048755 143 -DCIENGELKSVATEVVKECA---GLPIA-IVPVAKALK------NKSLYEWRNALRQL 190 (674)
Q Consensus 143 -~~~~~~~~~~~~~~i~~~c~---g~Pla-l~~~~~~l~------~~~~~~w~~~l~~l 190 (674)
......-..+..+.+++.++ |.|.. +..+-.... .-+.+.+..+++..
T Consensus 212 ~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 212 YGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred hhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 11111223456777888887 88873 333333221 12677777776664
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.69 E-value=4.3e-09 Score=107.61 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=85.5
Q ss_pred CCCcEEEcccCCCcccCchhhc-----CCCcceEEEecCcccCC--CCcccccccCCcEEEcCCcCCCC--cccc-----
Q 048755 330 PQLKYFHIRNDPSLRISDNIFT-----GMTELRVLDFTEMHLLA--LPSSLGLLQNLQTLSLDFCILGD--IAII----- 395 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~-----~~~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L~l~~~~~~~--~~~~----- 395 (674)
++|+.|++++|.+.......+. ..++|++|+|++|.+.. +..-...+.+|++|++++|.++. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4455666666554433222222 22567777777776652 11222345567777777776654 1222
Q ss_pred cCcCCccEEecCCCCchh-----chHhhcCCCCCcEEeCCCCCCCCCCC----hhhhhCCCCCCeEEeccCCCccccccc
Q 048755 396 GDLKKLEILTLRGSDMEK-----LVEEMGELTQLRLLDLSYCFNLQVIP----PNVISSLSRLEELYIGQSPIMWGKVGG 466 (674)
Q Consensus 396 ~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~ 466 (674)
...++|++|++++|.++. ++..+..+++|++|++++|. ++... ...+...++|++|++++|.+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~----- 225 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGD----- 225 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCH-----
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCH-----
Confidence 234667777777776653 44455667777777777764 22211 1124556677777777776510
Q ss_pred cCCcccccchhhhcCCCCccEEEeeeccCC
Q 048755 467 VDGERRNASLDELNNLSKLTSLEILIQDEK 496 (674)
Q Consensus 467 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 496 (674)
.+.......+...++|+.|++++|.+.
T Consensus 226 ---~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 226 ---TAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp ---HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred ---HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 011223344455667777777776543
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.65 E-value=1.6e-07 Score=90.27 Aligned_cols=104 Identities=9% Similarity=0.093 Sum_probs=72.1
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhhh-ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVLS-CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++.+||+||++.. ..++.+...+.....+.++|+||+...... ........+++++++.++..+++...+.... .
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~ 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-C
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-C
Confidence 46899999999764 345555444444456788888887654331 1112346889999999999999988774211 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVAKAL 175 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~~~l 175 (674)
....+..+.+++.++|.|..+..+...+
T Consensus 204 ~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 204 AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2234678899999999999988776544
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=7.1e-07 Score=92.07 Aligned_cols=212 Identities=13% Similarity=0.124 Sum_probs=138.8
Q ss_pred CCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC-cccccCcCCccEEecC
Q 048755 330 PQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD-IAIIGDLKKLEILTLR 407 (674)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~L~~L~l~ 407 (674)
.+|+.+.+..+ +..+....|.++ +|+.+.+.. .+..++ ..+..|.+|+.+++..+.+.. +.......+|+.+.+.
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 36888887665 666777777774 688888875 566663 567888889999888887766 3333346888888887
Q ss_pred CCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCcc
Q 048755 408 GSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLT 486 (674)
Q Consensus 408 ~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 486 (674)
. +++.++ ..+.++++|+.+.+..+ +..++...+.+ .+|+.+.+..+ + .......+..+++|+
T Consensus 212 ~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i------------~~I~~~aF~~c~~L~ 274 (401)
T 4fdw_A 212 V-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-V------------TNIASRAFYYCPELA 274 (401)
T ss_dssp T-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-C------------CEECTTTTTTCTTCC
T ss_pred C-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-c------------cEEChhHhhCCCCCC
Confidence 4 466666 34778888888888763 56666665666 67888887433 1 112234566788888
Q ss_pred EEEeeeccCC-----CCC-cccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEe
Q 048755 487 SLEILIQDEK-----TLP-RDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTL 560 (674)
Q Consensus 487 ~L~l~~~~~~-----~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L 560 (674)
.+.+.++... .++ ..+..|++|+.+.+... ...........+.+|+.+.|
T Consensus 275 ~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~------------------------i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 275 EVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES------------------------IRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT------------------------CCEECTTTTTTCCSCCEEEE
T ss_pred EEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc------------------------eEEEhhhhhcCCCCccEEEE
Confidence 8888766543 233 34577788888776411 11222334445678888888
Q ss_pred cCCCCccccccCCCCCCccccceeeeccc
Q 048755 561 DGLPDMKNVLCEPGREVFPKLNRLQIEHN 589 (674)
Q Consensus 561 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 589 (674)
... ++.+.... ..++ +|+.+.+.++
T Consensus 331 p~~--l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 331 PAN--VTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTT--CCEECTTS-SSSS-CCCEEEECCS
T ss_pred Ccc--ccEEcHHh-CCCC-CCCEEEEcCC
Confidence 543 44444322 2456 8888888776
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.62 E-value=1.7e-07 Score=96.96 Aligned_cols=171 Identities=16% Similarity=0.136 Sum_probs=104.6
Q ss_pred CCCCcHHHHHHHHHHhhhhccc-CceEEEEEecCCcCHHHHHHHHHHHhCCCCccc--chHHHHHHHHHHHHc-CCcEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNL-FEKVISSRVSQTPQIKEIQREIAEKLGLKIDEE--SETVRAWRLLEQLKK-ETKILI 76 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~-~kr~Ll 76 (674)
.+|+||||||+.+++....... -..++|+++....+...+...++..++...... ........+.+.+.. +++.+|
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vl 132 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVI 132 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEE
Confidence 4799999999999998765411 125788888777778888888888876543221 222334444444443 458999
Q ss_pred EEeCCCCcc------chhhccCCcCC-CCCCeEEEEEeCChhhhhcc-----CC-CcceEecCCCCHHHHHHHHHHHhC-
Q 048755 77 ILDDIWGSL------DLEAIGIPVAD-DNGGCKVLLTARSQDVLSCK-----MD-CQQNFVVDVLNEKEAWSLFKKMTG- 142 (674)
Q Consensus 77 VlDdv~~~~------~~~~l~~~~~~-~~~gs~ilvTtr~~~~~~~~-----~~-~~~~~~l~~L~~~~~~~lf~~~~~- 142 (674)
|+|+++... .+..+...+.. ...+..+|+||+........ .. ....+.+++++.++..+++...+.
T Consensus 133 ilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~ 212 (386)
T 2qby_A 133 VLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM 212 (386)
T ss_dssp EEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh
Confidence 999996532 22222211111 23456678888766432110 01 114799999999999999987653
Q ss_pred CCCCCCchhHHHHHHHHHhC---CchhhHHHH
Q 048755 143 DCIENGELKSVATEVVKECA---GLPIAIVPV 171 (674)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~c~---g~Plal~~~ 171 (674)
.........++.+.+++.++ |.|..+..+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~l 244 (386)
T 2qby_A 213 AFKPGVLPDNVIKLCAALAAREHGDARRALDL 244 (386)
T ss_dssp HBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hccCCCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 11112223456677777777 999844433
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.62 E-value=3e-07 Score=86.86 Aligned_cols=158 Identities=12% Similarity=0.047 Sum_probs=95.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+.+++.......-...+.++.+.......+.+.+........ ...+++.+||+||+
T Consensus 47 ~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~vliiDe~ 111 (226)
T 2chg_A 47 PGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAP---------------IGGAPFKIIFLDEA 111 (226)
T ss_dssp TTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCC---------------STTCSCEEEEEETG
T ss_pred CCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccC---------------CCccCceEEEEeCh
Confidence 699999999999988654321123455555554444333333222211100 11247899999999
Q ss_pred CCc--cchhhccCCcCCCCCCeEEEEEeCChhhhh-ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHH
Q 048755 82 WGS--LDLEAIGIPVADDNGGCKVLLTARSQDVLS-CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVV 158 (674)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~ 158 (674)
+.. ...+.+...+.....+.++|+||+...... ........+.+.+++.++..+++.+.+.... ..-..+..+.++
T Consensus 112 ~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~ 190 (226)
T 2chg_A 112 DALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALI 190 (226)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Confidence 865 233444333333455778888888654321 1112234889999999999999988774111 112346778899
Q ss_pred HHhCCchhhHHHHHHHH
Q 048755 159 KECAGLPIAIVPVAKAL 175 (674)
Q Consensus 159 ~~c~g~Plal~~~~~~l 175 (674)
+.++|.|..+..+...+
T Consensus 191 ~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 191 YISGGDFRKAINALQGA 207 (226)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 99999998665544333
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=1.8e-07 Score=95.14 Aligned_cols=96 Identities=22% Similarity=0.116 Sum_probs=55.4
Q ss_pred EEcccC-CCcccCchhhcCCCcceEEEecC-cccCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCCccEEecCCC
Q 048755 335 FHIRND-PSLRISDNIFTGMTELRVLDFTE-MHLLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLRGS 409 (674)
Q Consensus 335 L~l~~~-~~~~~~~~~~~~~~~Lr~L~l~~-~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~ 409 (674)
++.+++ ....+|. +..+.+|++|+|++ |.+..+| ..++.|.+|++|+|++|.++. +..+..+++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 5555555 56666666666664 6666554 346666666666666666655 234556666666666666
Q ss_pred CchhchHhhcCCCCCcEEeCCCC
Q 048755 410 DMEKLVEEMGELTQLRLLDLSYC 432 (674)
Q Consensus 410 ~~~~lp~~~~~l~~L~~L~l~~~ 432 (674)
++..+|..+....+|++|++.+|
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS
T ss_pred ccceeCHHHcccCCceEEEeeCC
Confidence 66666544333223666666655
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.53 E-value=4e-06 Score=86.47 Aligned_cols=263 Identities=11% Similarity=0.073 Sum_probs=176.0
Q ss_pred CCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCCccEEe
Q 048755 329 CPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILT 405 (674)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~ 405 (674)
+..++.+.+.. ....+....|.++ +|+.+.+..+ +..++ ..+..+ +|+.+.+.. .+.. ...+..+.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35566665543 4556777888875 7999999876 66664 446554 699999986 4444 36788899999999
Q ss_pred cCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCc
Q 048755 406 LRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKL 485 (674)
Q Consensus 406 l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L 485 (674)
+..++++.+|...-...+|+.+.+.. .+..++...+..+++|+.+.+..+-. ......+.+ .+|
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~-------------~I~~~aF~~-~~L 250 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVS-------------TIGQEAFRE-SGI 250 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCC-------------EECTTTTTT-CCC
T ss_pred cCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCcc-------------Ccccccccc-CCc
Confidence 99999999997655578999999985 47777777789999999999865421 111122333 578
Q ss_pred cEEEeeeccCCCCC-cccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhccccEEEecCCC
Q 048755 486 TSLEILIQDEKTLP-RDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKGIEDLTLDGLP 564 (674)
Q Consensus 486 ~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 564 (674)
+.+.+. +....++ ..+..|++|+.+.+..+... ..............+++|+.+.|..
T Consensus 251 ~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~------------------~~~~~~I~~~aF~~c~~L~~l~l~~-- 309 (401)
T 4fdw_A 251 TTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN------------------DDPEAMIHPYCLEGCPKLARFEIPE-- 309 (401)
T ss_dssp SEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC------------------CCTTCEECTTTTTTCTTCCEECCCT--
T ss_pred cEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc------------------CCcccEECHHHhhCCccCCeEEeCC--
Confidence 999984 3344553 45688999999998643211 0011123444556689999999984
Q ss_pred CccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCcccc-CCccEEE
Q 048755 565 DMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAESF-SKLKTIR 643 (674)
Q Consensus 565 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~l-~~L~~L~ 643 (674)
.++.+.... ..++++|+.+.|.. +++.+... . ...+ +|+.+.+.+. .+..+... .+..+ ..++.|.
T Consensus 310 ~i~~I~~~a-F~~c~~L~~l~lp~--~l~~I~~~--a----F~~~-~L~~l~l~~n-~~~~l~~~--~F~~~~~~l~~l~ 376 (401)
T 4fdw_A 310 SIRILGQGL-LGGNRKVTQLTIPA--NVTQINFS--A----FNNT-GIKEVKVEGT-TPPQVFEK--VWYGFPDDITVIR 376 (401)
T ss_dssp TCCEECTTT-TTTCCSCCEEEECT--TCCEECTT--S----SSSS-CCCEEEECCS-SCCBCCCS--SCCCSCTTCCEEE
T ss_pred ceEEEhhhh-hcCCCCccEEEECc--cccEEcHH--h----CCCC-CCCEEEEcCC-CCcccccc--cccCCCCCccEEE
Confidence 355554432 36789999999954 47776422 1 2234 8999999874 34444322 23344 3677887
Q ss_pred Eec
Q 048755 644 VEG 646 (674)
Q Consensus 644 i~~ 646 (674)
+-.
T Consensus 377 vp~ 379 (401)
T 4fdw_A 377 VPA 379 (401)
T ss_dssp ECG
T ss_pred eCH
Confidence 754
No 156
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.53 E-value=5.5e-07 Score=93.06 Aligned_cols=190 Identities=14% Similarity=0.074 Sum_probs=113.8
Q ss_pred CCCCcHHHHHHHHHHhhhhcc---c-CceEEEEEecCCcCHHHHHHHHHHHhCCCCccc--chHHHHHHHHHHHH-cCCc
Q 048755 1 MGGIGKTTLVKEVGRQAKENN---L-FEKVISSRVSQTPQIKEIQREIAEKLGLKIDEE--SETVRAWRLLEQLK-KETK 73 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~---~-F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~-~~kr 73 (674)
.+|+||||+|+++++...... . -..++|+++....+...+...++++++...... ........+.+.+. .+++
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 131 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGI 131 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCe
Confidence 479999999999999875431 1 124788898888899999999999997643322 22333445555553 3568
Q ss_pred EEEEEeCCCCccc----hhhc---cCCcCCC--CCCeEEEEEeCChhhhh----c-cCCCc-ceEecCCCCHHHHHHHHH
Q 048755 74 ILIILDDIWGSLD----LEAI---GIPVADD--NGGCKVLLTARSQDVLS----C-KMDCQ-QNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 74 ~LlVlDdv~~~~~----~~~l---~~~~~~~--~~gs~ilvTtr~~~~~~----~-~~~~~-~~~~l~~L~~~~~~~lf~ 138 (674)
.+||+||++.... .+.+ ....... ..+..+|.||+...... . ..... ..+.+++++.++..+++.
T Consensus 132 ~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 132 YIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp EEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHH
T ss_pred EEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 9999999986421 1222 1111111 34557777777653210 0 01112 478999999999999998
Q ss_pred HHhCC-CCCCCchhHHHHHHHHHhC---CchhhHHHHHHHH----h--c--C-ChHHHHHHHHHh
Q 048755 139 KMTGD-CIENGELKSVATEVVKECA---GLPIAIVPVAKAL----K--N--K-SLYEWRNALRQL 190 (674)
Q Consensus 139 ~~~~~-~~~~~~~~~~~~~i~~~c~---g~Plal~~~~~~l----~--~--~-~~~~w~~~l~~l 190 (674)
..+.. ........++.+.+++.++ |.|..+..+.... . + . +.+.++.+++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 212 TRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 77531 0111222345677888887 9994433322222 1 1 1 666676666654
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.52 E-value=2.5e-07 Score=94.08 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=85.4
Q ss_pred eEeeccc-cccCCCCCcCCCCCcEEEccc-CCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcC
Q 048755 312 AISLFNT-NISELPQGFECPQLKYFHIRN-DPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCI 388 (674)
Q Consensus 312 ~l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~ 388 (674)
.++..++ .+..+|....+.+|+.|++++ |.+..+++..|.++.+|++|+|++|.+..+| ..|+.+++|++|+|++|.
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4566777 788899933788999999996 9999999988999999999999999999775 568999999999999999
Q ss_pred CCC-cccccCcCCccEEecCCCCch
Q 048755 389 LGD-IAIIGDLKKLEILTLRGSDME 412 (674)
Q Consensus 389 ~~~-~~~~~~l~~L~~L~l~~~~~~ 412 (674)
+.. |..+.....|+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 988 444444344999999999876
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=5.3e-06 Score=85.81 Aligned_cols=299 Identities=14% Similarity=0.099 Sum_probs=142.1
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCC-----------------
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCIL----------------- 389 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~----------------- 389 (674)
.|.+|+.+.+.. ....+....|.+|.+|+.+++..+ ++.++ ..+..+.+|+.+.+..+-.
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEEC
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccccc
Confidence 677777777753 355667777777777777777643 44442 3455555565554432200
Q ss_pred ----C--CcccccCcCCccEEecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccc
Q 048755 390 ----G--DIAIIGDLKKLEILTLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWG 462 (674)
Q Consensus 390 ----~--~~~~~~~l~~L~~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 462 (674)
. ....+..+.+|+.+.+..+ +..++ ..+.++.+|+.+.+..+ +..++...+..+..|+.+.+..+...
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~-- 221 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYY-- 221 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCE--
T ss_pred CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceE--
Confidence 0 0123344555555555432 23333 22445555555555432 33333333455555555444322110
Q ss_pred cccccCCcccccchhhhcCCCCccEEEeeeccCCCCC-cccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCc
Q 048755 463 KVGGVDGERRNASLDELNNLSKLTSLEILIQDEKTLP-RDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGAN 541 (674)
Q Consensus 463 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 541 (674)
.........+|+.+.+.... ..+. ..+..+..|+.+.+...........+.....+..+....
T Consensus 222 ------------i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~--- 285 (394)
T 4fs7_A 222 ------------LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGS--- 285 (394)
T ss_dssp ------------ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECS---
T ss_pred ------------eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCc---
Confidence 00111123456666554221 1121 223456666766664322111111111222222222221
Q ss_pred eecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcc
Q 048755 542 ICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLR 621 (674)
Q Consensus 542 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 621 (674)
...+......+.+|+.+.+.. .++.+.... ..++++|+.+.|.+ .++.+... ....+.+|+.+.|..
T Consensus 286 ~~i~~~~F~~~~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~------aF~~c~~L~~i~lp~-- 352 (394)
T 4fs7_A 286 VIVPEKTFYGCSSLTEVKLLD--SVKFIGEEA-FESCTSLVSIDLPY--LVEEIGKR------SFRGCTSLSNINFPL-- 352 (394)
T ss_dssp SEECTTTTTTCTTCCEEEECT--TCCEECTTT-TTTCTTCCEECCCT--TCCEECTT------TTTTCTTCCEECCCT--
T ss_pred eeecccccccccccccccccc--ccceechhh-hcCCCCCCEEEeCC--cccEEhHH------hccCCCCCCEEEECc--
Confidence 112333344567788888754 244443321 35677888888753 36665321 112345677776643
Q ss_pred cccccccCCCCccccCCccEEEEecCCCccccCCchhhhhcccce
Q 048755 622 NLEEICCGPLTAESFSKLKTIRVEGCDKLKNVFPLVIELTQLRTL 666 (674)
Q Consensus 622 ~L~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~l~~L~~L 666 (674)
+++.+. ...+..+++|+.+++.. +++.+......+++|+.+
T Consensus 353 ~l~~I~--~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 353 SLRKIG--ANAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEC--TTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred cccEeh--HHHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence 355553 23456678888888754 344442222225555543
No 159
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.44 E-value=3.1e-08 Score=101.23 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=107.0
Q ss_pred ccceeEeeccccccCC-----CCCc--CCCCCcEEEcccCCCcccC-chhhcCCCcceEEEecCcccCCC-Cccc-----
Q 048755 308 KVCTAISLFNTNISEL-----PQGF--ECPQLKYFHIRNDPSLRIS-DNIFTGMTELRVLDFTEMHLLAL-PSSL----- 373 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~-----~~~~--~~~~L~~L~l~~~~~~~~~-~~~~~~~~~Lr~L~l~~~~~~~l-p~~~----- 373 (674)
+.++.|++++|.+... ...+ .+++|+.|++++|.+.... ......+++|++|+|++|.+... ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566777777765421 1111 3368999999999875532 22334467899999999988742 2222
Q ss_pred ccccCCcEEEcCCcCCCC--c----ccccCcCCccEEecCCCCchh-----chHhhcCCCCCcEEeCCCCCCCCCCCh--
Q 048755 374 GLLQNLQTLSLDFCILGD--I----AIIGDLKKLEILTLRGSDMEK-----LVEEMGELTQLRLLDLSYCFNLQVIPP-- 440 (674)
Q Consensus 374 ~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~-- 440 (674)
....+|++|++++|.++. . ..+..+++|++|++++|.+.. ++..+...++|++|++++|.. +....
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i-~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC-CHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC-CHHHHHH
Confidence 246789999999998865 1 334678999999999998873 456678889999999999943 33211
Q ss_pred --hhhhCCCCCCeEEeccCCC
Q 048755 441 --NVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 441 --~~l~~l~~L~~L~l~~~~~ 459 (674)
..+...++|++|++++|.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHhCCCCCEEeccCCCC
Confidence 1245678999999999987
No 160
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.42 E-value=2.5e-06 Score=88.23 Aligned_cols=170 Identities=13% Similarity=0.112 Sum_probs=108.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc--cchHHHHHHHHHHHH-cCCcEEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE--ESETVRAWRLLEQLK-KETKILIIL 78 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~-~~kr~LlVl 78 (674)
+|+||||+|+.+++....... ..++|++++...+...+.+.++..++..... .........+.+.+. .+++.+||+
T Consensus 53 ~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlil 131 (389)
T 1fnn_A 53 PGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVL 131 (389)
T ss_dssp TTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 699999999999998765421 2578888888888899999999998754322 122233333444333 356899999
Q ss_pred eCCCCc--cchhhccCCcCCC-C---CCeEEEEEeCChhhhhccC-----C-CcceEecCCCCHHHHHHHHHHHhCC-CC
Q 048755 79 DDIWGS--LDLEAIGIPVADD-N---GGCKVLLTARSQDVLSCKM-----D-CQQNFVVDVLNEKEAWSLFKKMTGD-CI 145 (674)
Q Consensus 79 Ddv~~~--~~~~~l~~~~~~~-~---~gs~ilvTtr~~~~~~~~~-----~-~~~~~~l~~L~~~~~~~lf~~~~~~-~~ 145 (674)
||++.. .....+...+... . .+..+|++|+......... . ....+.+++++.++..+++...+.. ..
T Consensus 132 DE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~ 211 (389)
T 1fnn_A 132 DDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA 211 (389)
T ss_dssp ETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC
T ss_pred ECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC
Confidence 999765 2233332222111 1 3667888887664321110 0 1236999999999999999877631 11
Q ss_pred CCCchhHHHHHHHHHh---------CCchhhHHHHH
Q 048755 146 ENGELKSVATEVVKEC---------AGLPIAIVPVA 172 (674)
Q Consensus 146 ~~~~~~~~~~~i~~~c---------~g~Plal~~~~ 172 (674)
...-..+..+.+++.+ +|.|..+..+.
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l 247 (389)
T 1fnn_A 212 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDIL 247 (389)
T ss_dssp TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 1223456788899999 78876554443
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.26 E-value=3.1e-06 Score=85.00 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=92.0
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|+||||+|+.+++.......-..+++++.++......+ +++++.+..... ....+++.++|+||
T Consensus 50 ~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~-------------~~~~~~~~viiiDe 115 (323)
T 1sxj_B 50 MPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKHFAQKKL-------------HLPPGKHKIVILDE 115 (323)
T ss_dssp STTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHHHHHBCC-------------CCCTTCCEEEEEES
T ss_pred cCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHHHHhccc-------------cCCCCCceEEEEEC
Confidence 3799999999999998643311123555655544333222 222222110000 00034689999999
Q ss_pred CCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHH
Q 048755 81 IWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEV 157 (674)
Q Consensus 81 v~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i 157 (674)
++.. ..++.+...+.....++++|+||+..... .........+++.+++.++..+++...+.... .....+....+
T Consensus 116 ~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l 194 (323)
T 1sxj_B 116 ADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED-VKYTNDGLEAI 194 (323)
T ss_dssp GGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 9864 33444443333344677888888765432 11112345899999999999999988763111 11234677899
Q ss_pred HHHhCCchhhHHH
Q 048755 158 VKECAGLPIAIVP 170 (674)
Q Consensus 158 ~~~c~g~Plal~~ 170 (674)
++.++|.|..+..
T Consensus 195 ~~~~~G~~r~a~~ 207 (323)
T 1sxj_B 195 IFTAEGDMRQAIN 207 (323)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHcCCCHHHHHH
Confidence 9999999955433
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=2.5e-05 Score=80.66 Aligned_cols=291 Identities=11% Similarity=0.076 Sum_probs=146.9
Q ss_pred CCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCCccEEecCCCCchhch--
Q 048755 341 PSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEILTLRGSDMEKLV-- 415 (674)
Q Consensus 341 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~lp-- 415 (674)
....+....|.++.+|+.+.+.. .++.++ ..+..|.+|+.+++..+ ++. ...+..+.+|+.+.+..+ +..+.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 34568888899999999999974 477774 56889999999999765 333 245566777777665432 22222
Q ss_pred ---------------------HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccccccccCCccccc
Q 048755 416 ---------------------EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWGKVGGVDGERRNA 474 (674)
Q Consensus 416 ---------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 474 (674)
..+.++.+|+.+.+..+ ...++...+..+.+|+.+.+..+-. ..
T Consensus 135 aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~-------------~I 199 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLK-------------II 199 (394)
T ss_dssp TTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCC-------------EE
T ss_pred eeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCce-------------Ee
Confidence 12334444444444332 2233333344444444444322210 00
Q ss_pred chhhhcCCCCccEEEeeeccCCCCCcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCCceecchhHHhhhcc
Q 048755 475 SLDELNNLSKLTSLEILIQDEKTLPRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGANICLNEGHIMQLKG 554 (674)
Q Consensus 475 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 554 (674)
.-..+.++..|+.+.+..+. ..+........+|+.+.+...........+.....+..+.+.... ..........+.+
T Consensus 200 ~~~~F~~~~~L~~i~~~~~~-~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~ 277 (394)
T 4fs7_A 200 RDYCFAECILLENMEFPNSL-YYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSG 277 (394)
T ss_dssp CTTTTTTCTTCCBCCCCTTC-CEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTT
T ss_pred CchhhccccccceeecCCCc-eEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCc-ceeeccccccccc
Confidence 11222334444444433221 111122223345666655321111111111122233333333221 1222222333455
Q ss_pred ccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCcccccccccCCCCcc
Q 048755 555 IEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDLRNLEEICCGPLTAE 634 (674)
Q Consensus 555 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~ 634 (674)
++.+.+.... ++. ....++++|+.+.+.+ +++.+.+. ....+.+|+.+.|.+ +++.+. ...+.
T Consensus 278 l~~~~~~~~~----i~~-~~F~~~~~L~~i~l~~--~i~~I~~~------aF~~c~~L~~i~lp~--~v~~I~--~~aF~ 340 (394)
T 4fs7_A 278 LKKVIYGSVI----VPE-KTFYGCSSLTEVKLLD--SVKFIGEE------AFESCTSLVSIDLPY--LVEEIG--KRSFR 340 (394)
T ss_dssp CCEEEECSSE----ECT-TTTTTCTTCCEEEECT--TCCEECTT------TTTTCTTCCEECCCT--TCCEEC--TTTTT
T ss_pred cceeccCcee----ecc-cccccccccccccccc--ccceechh------hhcCCCCCCEEEeCC--cccEEh--HHhcc
Confidence 5555554321 111 1124577888887754 45665321 122356788887743 456663 23456
Q ss_pred ccCCccEEEEecCCCccccCCchhh-hhcccceeccc
Q 048755 635 SFSKLKTIRVEGCDKLKNVFPLVIE-LTQLRTLELKN 670 (674)
Q Consensus 635 ~l~~L~~L~i~~C~~L~~l~~~~~~-l~~L~~L~l~~ 670 (674)
.+.+|+.+++.. +++.+...... +++|+.+++.+
T Consensus 341 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 341 GCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 778899888853 47777655544 78888887743
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.18 E-value=1e-06 Score=89.14 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=17.0
Q ss_pred hcCCCcceEEEecCcccCCCCcccccccCCcEEEcCCcCC
Q 048755 350 FTGMTELRVLDFTEMHLLALPSSLGLLQNLQTLSLDFCIL 389 (674)
Q Consensus 350 ~~~~~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~ 389 (674)
+..+++|+.|+++++.-..++. + .+++|+.|++..|.+
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBC
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCC
Confidence 3445555555555542122222 2 244555555554443
No 164
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=4.6e-07 Score=80.23 Aligned_cols=91 Identities=8% Similarity=0.021 Sum_probs=67.2
Q ss_pred ccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCC----CCccccccccCccccccccc
Q 048755 553 KGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIA----FPLLESLFLRDLRNLEEICC 628 (674)
Q Consensus 553 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~----~~~L~~L~l~~c~~L~~~~~ 628 (674)
.+|+.|++++|. +++..... ..++++|+.|++++|..+++..-. .... .++|+.|+|++|+++++-..
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~------~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLE------RLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHH------HHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHH------HHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 468999999997 55544322 367999999999999888764211 1122 35799999999998876432
Q ss_pred CCCCccccCCccEEEEecCCCcccc
Q 048755 629 GPLTAESFSKLKTIRVEGCDKLKNV 653 (674)
Q Consensus 629 ~~~~~~~l~~L~~L~i~~C~~L~~l 653 (674)
..+..+++|++|++++|+.+++.
T Consensus 133 --~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 133 --IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp --HHGGGCTTCCEEEEESCTTCCCH
T ss_pred --HHHhcCCCCCEEECCCCCCCCch
Confidence 22457899999999999999875
No 165
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.15 E-value=1.2e-06 Score=88.55 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=95.7
Q ss_pred cCCCcceEEEecCcccC----------CCCcccccccCCcEEEcCCcCCCCcccccCcCCccEEecCCCCchh-chHhhc
Q 048755 351 TGMTELRVLDFTEMHLL----------ALPSSLGLLQNLQTLSLDFCILGDIAIIGDLKKLEILTLRGSDMEK-LVEEMG 419 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~~~~----------~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~ 419 (674)
.++++|+.|.+.+.... .++..+..+++|+.|.+++|.-..++.+ .+++|++|++..|.+.. ....+.
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHH
Confidence 34566777766543221 2444556788999999988731222334 38899999999887752 223333
Q ss_pred --CCCCCcEEeCCCCCC-------CCCCChhh-hhCCCCCCeEEeccCCCccccccccCCcccccchhhhcCCCCccEEE
Q 048755 420 --ELTQLRLLDLSYCFN-------LQVIPPNV-ISSLSRLEELYIGQSPIMWGKVGGVDGERRNASLDELNNLSKLTSLE 489 (674)
Q Consensus 420 --~l~~L~~L~l~~~~~-------~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 489 (674)
.+++|++|+++.+.. ...+.... .+.+++|+.|.+.+|.+... ....+...+.+++|++|+
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~---------~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV---------VVEMFLESDILPQLETMD 285 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH---------HHHHHHHCSSGGGCSEEE
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH---------HHHHHHhCccCCCCCEEE
Confidence 789999998853211 11111110 13578999999988875200 011122224578999999
Q ss_pred eeeccCCC-----CCcccccccCccEEEEEEc
Q 048755 490 ILIQDEKT-----LPRDLSFFKMLQRYRISIG 516 (674)
Q Consensus 490 l~~~~~~~-----~~~~l~~~~~L~~L~l~~~ 516 (674)
++.|.... ++..+..+++|+.|+++.|
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 98876443 4455567889999988655
No 166
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.1e-05 Score=81.06 Aligned_cols=158 Identities=13% Similarity=0.083 Sum_probs=91.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+.+++.......-..++.++.+.......+...+.+..... .+..+++.++|+||+
T Consensus 55 ~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~vliiDe~ 119 (327)
T 1iqp_A 55 PGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTK---------------PIGGASFKIIFLDEA 119 (327)
T ss_dssp TTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSC---------------CGGGCSCEEEEEETG
T ss_pred CCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhC---------------CcCCCCCeEEEEeCC
Confidence 69999999999999864331111244455443222111111111100000 011246889999999
Q ss_pred CCc--cchhhccCCcCCCCCCeEEEEEeCChhhhh-ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHH
Q 048755 82 WGS--LDLEAIGIPVADDNGGCKVLLTARSQDVLS-CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVV 158 (674)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~ 158 (674)
+.. ...+.+...+.....+.++|+||....... ........+++.+++.++..+++...+.... ..-..+..+.++
T Consensus 120 ~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~ 198 (327)
T 1iqp_A 120 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELTEEGLQAIL 198 (327)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTT-CEECHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHH
Confidence 865 334444433434455788888887654321 0111234789999999999999987764211 122346788899
Q ss_pred HHhCCchhhHHHHHHHH
Q 048755 159 KECAGLPIAIVPVAKAL 175 (674)
Q Consensus 159 ~~c~g~Plal~~~~~~l 175 (674)
+.++|.|..+..+...+
T Consensus 199 ~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 199 YIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHH
Confidence 99999998765554443
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.02 E-value=0.0008 Score=69.26 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=66.5
Q ss_pred CCcEEEcccCCCcccCchhhcCCCcceEEEecCcc---cCCCC-cccccccCCcEEEcCCcCCCC--cccccCcCCccEE
Q 048755 331 QLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMH---LLALP-SSLGLLQNLQTLSLDFCILGD--IAIIGDLKKLEIL 404 (674)
Q Consensus 331 ~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~---~~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~~~~l~~L~~L 404 (674)
.|+.+.+.. ....+....|.++.+|+.+.+..+. ++.+. ..+..+.+|+.+.+..+ +.. ...+..+.+|+.+
T Consensus 65 ~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 467666654 3556667777778888887776653 44442 34566666666655443 222 2345566777777
Q ss_pred ecCCCCchhch-HhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEec
Q 048755 405 TLRGSDMEKLV-EEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIG 455 (674)
Q Consensus 405 ~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 455 (674)
.+.. .+..++ ..+..+.+|+.+.+..+ +..+....+. ...|+.+.+-
T Consensus 143 ~lp~-~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip 190 (394)
T 4gt6_A 143 TIPE-GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIP 190 (394)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEEC
T ss_pred cccc-eeeeecccceecccccccccccce--eeEecccccc-ccceeEEEEC
Confidence 7653 233333 23556667777766542 3444433333 2456666653
No 168
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.02 E-value=3.8e-06 Score=74.39 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=53.5
Q ss_pred CcceEEEecCcccCCC-CcccccccCCcEEEcCCcC-CCC--cccccCc----CCccEEecCCC-Cchhc-hHhhcCCCC
Q 048755 354 TELRVLDFTEMHLLAL-PSSLGLLQNLQTLSLDFCI-LGD--IAIIGDL----KKLEILTLRGS-DMEKL-VEEMGELTQ 423 (674)
Q Consensus 354 ~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~l~~~~-~~~--~~~~~~l----~~L~~L~l~~~-~~~~l-p~~~~~l~~ 423 (674)
..|+.||+++|.++.. ...+..+++|++|+|++|. +++ +..+..+ ++|++|++++| +++.- -..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688888888887632 3456677788888888773 554 3444443 36777777776 35521 133556677
Q ss_pred CcEEeCCCCCCCCC
Q 048755 424 LRLLDLSYCFNLQV 437 (674)
Q Consensus 424 L~~L~l~~~~~~~~ 437 (674)
|++|++++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777765554
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.97 E-value=0.00013 Score=70.81 Aligned_cols=169 Identities=15% Similarity=0.155 Sum_probs=89.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... | +.++.+... .+. ...........+.+.....+..+|++||+
T Consensus 73 ~GtGKT~la~~ia~~~~~~--~---~~i~~~~~~------------~g~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 133 (272)
T 1d2n_A 73 PHSGKTALAAKIAEESNFP--F---IKICSPDKM------------IGF--SETAKCQAMKKIFDDAYKSQLSCVVVDDI 133 (272)
T ss_dssp TTSSHHHHHHHHHHHHTCS--E---EEEECGGGC------------TTC--CHHHHHHHHHHHHHHHHTSSEEEEEECCH
T ss_pred CCCcHHHHHHHHHHHhCCC--E---EEEeCHHHh------------cCC--chHHHHHHHHHHHHHHHhcCCcEEEEECh
Confidence 6999999999999975322 2 233332210 000 00011112233344444456899999998
Q ss_pred CCc-----------cc-hhhc---cCCcCCCCCCeEEEEEeCChhhhhc---cCCCcceEecCCCCH-HHHHHHHHHHhC
Q 048755 82 WGS-----------LD-LEAI---GIPVADDNGGCKVLLTARSQDVLSC---KMDCQQNFVVDVLNE-KEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~-----------~~-~~~l---~~~~~~~~~gs~ilvTtr~~~~~~~---~~~~~~~~~l~~L~~-~~~~~lf~~~~~ 142 (674)
+.. .. .+.+ ............||.||........ .......+.+++++. ++...++.+...
T Consensus 134 d~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~ 213 (272)
T 1d2n_A 134 ERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN 213 (272)
T ss_dssp HHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC
T ss_pred hhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC
Confidence 542 11 1222 2222123334556777776644321 122246788999988 677776665321
Q ss_pred CCCCCCchhHHHHHHHHHhCCc------hhhHHHHHHHHhcCChHHHHHHHHHhccccc
Q 048755 143 DCIENGELKSVATEVVKECAGL------PIAIVPVAKALKNKSLYEWRNALRQLKRPFL 195 (674)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~c~g~------Plal~~~~~~l~~~~~~~w~~~l~~l~~~~~ 195 (674)
...+....+++.+.|. .-++..+-......+...++.+++.+.+...
T Consensus 214 ------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 214 ------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGA 266 (272)
T ss_dssp ------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTSC
T ss_pred ------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcCC
Confidence 1245678888898883 3333333322223356677777777655433
No 170
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.93 E-value=9.7e-05 Score=72.47 Aligned_cols=141 Identities=9% Similarity=0.049 Sum_probs=83.0
Q ss_pred CCCcHHHHHHHHHHhhhhccc---C--ceEEEEEecCCcCHHHHHHHHHHHhCCCCc-ccchHHHHHHHHHHH--HcCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNL---F--EKVISSRVSQTPQIKEIQREIAEKLGLKID-EESETVRAWRLLEQL--KKETK 73 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~---F--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~l--~~~kr 73 (674)
+|+|||++|++|++....... . -.++.|++....+...++..|++++..... .......+..+.+.+ ..+++
T Consensus 54 PGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~ 133 (318)
T 3te6_A 54 DDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRK 133 (318)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCE
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCc
Confidence 799999999999998864321 1 136777877888899999999999954422 122233444555543 24578
Q ss_pred EEEEEeCCCCccchhhccCCc--CCC-CCCeEEEEEeCChhh----hhcc--CCC-cceEecCCCCHHHHHHHHHHHhC
Q 048755 74 ILIILDDIWGSLDLEAIGIPV--ADD-NGGCKVLLTARSQDV----LSCK--MDC-QQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 74 ~LlVlDdv~~~~~~~~l~~~~--~~~-~~gs~ilvTtr~~~~----~~~~--~~~-~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+++|||+++...+-+.+...+ +.. .....+|.++...+. .... .+. ...+.+++++.+|..+++.+++.
T Consensus 134 ~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 134 TLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp EEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 999999998653211111111 111 111223333332211 1100 011 24689999999999999988774
No 171
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.76 E-value=0.00012 Score=73.06 Aligned_cols=154 Identities=11% Similarity=0.057 Sum_probs=89.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHH--HHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQ--LKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--l~~~kr~LlVlD 79 (674)
.|+|||++|+.+++.......-..++.++.+.......+.+ ........ ...+++.++|+|
T Consensus 47 ~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~vliiD 109 (319)
T 2chq_A 47 PGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRH-----------------KIKEFARTAPIGGAPFKIIFLD 109 (319)
T ss_dssp SSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSH-----------------HHHHHHHSCCSSSCCCEEEEEE
T ss_pred CCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHH-----------------HHHHHHhcCCCCCCCceEEEEe
Confidence 69999999999999864321111234445543221111000 00111100 112468899999
Q ss_pred CCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHH
Q 048755 80 DIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATE 156 (674)
Q Consensus 80 dv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 156 (674)
+++.. ...+.+...+.....+.++|+||...... .........+++.+++.++..+++...+.... ..-..+....
T Consensus 110 e~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~ 188 (319)
T 2chq_A 110 EADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEA 188 (319)
T ss_dssp TGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTC-CCBCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHH
Confidence 99764 23455544444445677888888765422 11112335899999999999999987764211 1223467788
Q ss_pred HHHHhCCchhhHHHHHH
Q 048755 157 VVKECAGLPIAIVPVAK 173 (674)
Q Consensus 157 i~~~c~g~Plal~~~~~ 173 (674)
+++.++|.+..+.....
T Consensus 189 l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 189 LIYISGGDFRKAINALQ 205 (319)
T ss_dssp HHHTTTTCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHH
Confidence 88999999876554433
No 172
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.74 E-value=3.1e-05 Score=70.31 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=59.5
Q ss_pred hcCCCcceEEEecCc-ccC-----CCCcccccccCCcEEEcCCcCCCC--c----ccccCcCCccEEecCCCCchh----
Q 048755 350 FTGMTELRVLDFTEM-HLL-----ALPSSLGLLQNLQTLSLDFCILGD--I----AIIGDLKKLEILTLRGSDMEK---- 413 (674)
Q Consensus 350 ~~~~~~Lr~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~--~----~~~~~l~~L~~L~l~~~~~~~---- 413 (674)
+...+.|++|+|++| .+. .+...+...++|++|++++|.+.. . ..+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 444556666666665 543 123334445566666666665544 1 223344566677776666552
Q ss_pred -chHhhcCCCCCcEEeC--CCCCCCCCCC---hhhhhCCCCCCeEEeccCCC
Q 048755 414 -LVEEMGELTQLRLLDL--SYCFNLQVIP---PNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 414 -lp~~~~~l~~L~~L~l--~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~ 459 (674)
+...+...++|++|++ ++|.....-. ...+...+.|++|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4455666667777777 5553221110 01244556777777777654
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.67 E-value=0.00014 Score=72.86 Aligned_cols=147 Identities=12% Similarity=0.047 Sum_probs=85.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... .++++.+......++... +.. . ..+..+|++||+
T Consensus 47 ~GtGKT~la~~i~~~~~~~-----~~~~~~~~~~~~~~l~~~----l~~-----------------~-~~~~~~l~lDEi 99 (324)
T 1hqc_A 47 PGLGKTTLAHVIAHELGVN-----LRVTSGPAIEKPGDLAAI----LAN-----------------S-LEEGDILFIDEI 99 (324)
T ss_dssp TTCCCHHHHHHHHHHHTCC-----EEEECTTTCCSHHHHHHH----HTT-----------------T-CCTTCEEEETTT
T ss_pred CCCCHHHHHHHHHHHhCCC-----EEEEeccccCChHHHHHH----HHH-----------------h-ccCCCEEEEECC
Confidence 6999999999999876422 345554433222222211 100 0 135678899998
Q ss_pred CCcc--chhhccCCcCC------------------CCCCeEEEEEeCChhhhhc--cCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL--DLEAIGIPVAD------------------DNGGCKVLLTARSQDVLSC--KMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~--~~~~l~~~~~~------------------~~~gs~ilvTtr~~~~~~~--~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... ....+...+.. ...+.++|.||........ ..+....+.+.+++.++..+++.+
T Consensus 100 ~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~ 179 (324)
T 1hqc_A 100 HRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMR 179 (324)
T ss_dssp TSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHH
Confidence 7652 11211111100 0123456666654332211 112235789999999999999988
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHHHh
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVPVAKALK 176 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~l~ 176 (674)
.+.... ..-..+..+.+++.+.|.|..+..+...+.
T Consensus 180 ~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 180 DARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp HHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred HHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 774221 122346788999999999988877766553
No 174
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.66 E-value=0.0013 Score=67.71 Aligned_cols=292 Identities=13% Similarity=0.158 Sum_probs=155.2
Q ss_pred ceeEeeccccccCCCCC--cCCCCCcEEEcccC---CCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEE
Q 048755 310 CTAISLFNTNISELPQG--FECPQLKYFHIRND---PSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLS 383 (674)
Q Consensus 310 ~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~ 383 (674)
++.+.+.. .+..+... ..|.+|+.+.+..+ ....+....|.++..|+.+.+..+ +..++ ..+..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 55555543 24444433 28999999998765 356688888999999988777643 44453 4577889999999
Q ss_pred cCCcCCCC-cccccCcCCccEEecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCCccc
Q 048755 384 LDFCILGD-IAIIGDLKKLEILTLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPIMWG 462 (674)
Q Consensus 384 l~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 462 (674)
+......- ...+..+.+|+.+.+..+ ++.+....-...+|+.+.+... ...+....+..+..+.............
T Consensus 144 lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred ccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccccccccc
Confidence 87542211 345677889999988654 5555544334567888887653 3344444467777887776544332110
Q ss_pred cccccCCc-ccccchhhhcCCCCccEEEeeeccCCCC-CcccccccCccEEEEEEcccccccCCCCcccceeEEeecCCC
Q 048755 463 KVGGVDGE-RRNASLDELNNLSKLTSLEILIQDEKTL-PRDLSFFKMLQRYRISIGYDWWSVGPWDGISRKFKLKLTNGA 540 (674)
Q Consensus 463 ~~~~~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 540 (674)
........ ..............+..+.+-.. ...+ ...+..+.+|+.+.+...
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~------------------------ 275 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDS------------------------ 275 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTT------------------------
T ss_pred cceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccc------------------------
Confidence 00000000 00000001111122222222110 0011 122345556666555211
Q ss_pred ceecchhHHhhhccccEEEecCCCCccccccCCCCCCccccceeeeccccCceeeeecCCCCCCCCCCCCccccccccCc
Q 048755 541 NICLNEGHIMQLKGIEDLTLDGLPDMKNVLCEPGREVFPKLNRLQIEHNGNLVRLVDTMDCTPAPTIAFPLLESLFLRDL 620 (674)
Q Consensus 541 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~L~~L~l~~c 620 (674)
...........+++|+.+.+.. .++.++... ..++++|+.+.|-. +++.+.+. ....+.+|+.+.|-.
T Consensus 276 ~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~------aF~~C~~L~~i~ip~- 343 (394)
T 4gt6_A 276 VVSIGTGAFMNCPALQDIEFSS--RITELPESV-FAGCISLKSIDIPE--GITQILDD------AFAGCEQLERIAIPS- 343 (394)
T ss_dssp CCEECTTTTTTCTTCCEEECCT--TCCEECTTT-TTTCTTCCEEECCT--TCCEECTT------TTTTCTTCCEEEECT-
T ss_pred cceecCcccccccccccccCCC--cccccCcee-ecCCCCcCEEEeCC--cccEehHh------HhhCCCCCCEEEECc-
Confidence 1112223334467777777753 344443322 35677788877754 35555321 122345677777632
Q ss_pred ccccccccCCCCccccCCccEEEEec
Q 048755 621 RNLEEICCGPLTAESFSKLKTIRVEG 646 (674)
Q Consensus 621 ~~L~~~~~~~~~~~~l~~L~~L~i~~ 646 (674)
+++.+. ...+..|++|+.+++.+
T Consensus 344 -sv~~I~--~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 344 -SVTKIP--ESAFSNCTALNNIEYSG 366 (394)
T ss_dssp -TCCBCC--GGGGTTCTTCCEEEESS
T ss_pred -ccCEEh--HhHhhCCCCCCEEEECC
Confidence 355553 22345677888887765
No 175
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.65 E-value=0.00015 Score=74.12 Aligned_cols=103 Identities=9% Similarity=0.093 Sum_probs=66.7
Q ss_pred CCcEEEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++.++|+||++.. ...+.+...+.....+..+|++|...... .........+++.+++.++..+++...+.... .
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~ 196 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I 196 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-C
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 46789999999754 23444433333344567777777654322 11122346889999999999999987663110 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~~~ 174 (674)
....+....+++.++|.|..+..+...
T Consensus 197 ~~~~~a~~~l~~~~~G~~r~~~~~l~~ 223 (373)
T 1jr3_A 197 AHEPRALQLLARAAEGSLRDALSLTDQ 223 (373)
T ss_dssp CBCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 123466788999999999887665533
No 176
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.64 E-value=2.8e-05 Score=70.64 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=61.8
Q ss_pred CCCCCcEEEcccC-CCccc----CchhhcCCCcceEEEecCcccCC-----CCcccccccCCcEEEcCCcCCCC------
Q 048755 328 ECPQLKYFHIRND-PSLRI----SDNIFTGMTELRVLDFTEMHLLA-----LPSSLGLLQNLQTLSLDFCILGD------ 391 (674)
Q Consensus 328 ~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~Lr~L~l~~~~~~~-----lp~~~~~l~~L~~L~l~~~~~~~------ 391 (674)
..++|+.|++++| .+... ....+...++|++|+|++|.+.. +...+...++|++|++++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3566777777766 54331 12234456667777777776652 33444455667777777776654
Q ss_pred cccccCcCCccEEec--CCCCchh-----chHhhcCCCCCcEEeCCCC
Q 048755 392 IAIIGDLKKLEILTL--RGSDMEK-----LVEEMGELTQLRLLDLSYC 432 (674)
Q Consensus 392 ~~~~~~l~~L~~L~l--~~~~~~~-----lp~~~~~l~~L~~L~l~~~ 432 (674)
...+...++|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 134455566777777 6666552 3444556667777777666
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.62 E-value=0.00041 Score=69.47 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=63.8
Q ss_pred CCcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhh-hhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 71 ETKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDV-LSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 71 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+++-++|+|+++... ..+++...+.....++.+|++|.+... ..........+++++++.++..+.+.....
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~----- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT----- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC-----
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC-----
Confidence 467889999998652 344444344444456777777776542 221223446899999999999999887751
Q ss_pred CchhHHHHHHHHHhCCchhhHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
...+.+..++..++|.|..+..+
T Consensus 182 -~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 -MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp -CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred -CCHHHHHHHHHHcCCCHHHHHHH
Confidence 12356678999999999765443
No 178
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.62 E-value=0.0022 Score=65.57 Aligned_cols=122 Identities=7% Similarity=0.101 Sum_probs=60.5
Q ss_pred CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCC-cccccccCCcEEEcCCcCCCCc--ccccCcCCccEE
Q 048755 328 ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALP-SSLGLLQNLQTLSLDFCILGDI--AIIGDLKKLEIL 404 (674)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L 404 (674)
...+|+.+.+.. .+..+....|.+|.+|+.+.|..+ ++.+. ..+..+ +|+.+.+..+ +..+ ..+. ..+|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~-~~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQ-GTDLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTT-TCCCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceec-cCCcccc
Confidence 445566666543 345566677777777777777543 44443 334444 4555555432 2221 1222 2367777
Q ss_pred ecCCCCchhchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccC
Q 048755 405 TLRGSDMEKLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQS 457 (674)
Q Consensus 405 ~l~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 457 (674)
.+..+ +..+....-.-.+|..+.+.. .+..+....+..+.+++.+.+...
T Consensus 119 ~lp~~-~~~i~~~~F~~~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 119 EFPGA-TTEIGNYIFYNSSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp ECCTT-CCEECTTTTTTCCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTT
T ss_pred cCCCc-cccccccccccceeeeeeccc--eeeccccchhcccccccccccccc
Confidence 76543 333332222223455554433 233333333556666666665443
No 179
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.60 E-value=0.00094 Score=64.30 Aligned_cols=151 Identities=15% Similarity=0.202 Sum_probs=80.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... .+.++.+.-.+ .... ........+.+......+.+|++||+
T Consensus 48 ~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~a~~~~~~vl~iDei 107 (262)
T 2qz4_A 48 PGCGKTLLAKAVATEAQVP-----FLAMAGAEFVE--------------VIGG-LGAARVRSLFKEARARAPCIVYIDEI 107 (262)
T ss_dssp TTSSHHHHHHHHHHHHTCC-----EEEEETTTTSS--------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred CCCCHHHHHHHHHHHhCCC-----EEEechHHHHh--------------hccC-hhHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 6999999999999976532 34445443211 0000 11122333444444456899999999
Q ss_pred CCcc-------------c----hhhccCCcCC--CCCCeEEEEEeCChhhhhc--cC--CCcceEecCCCCHHHHHHHHH
Q 048755 82 WGSL-------------D----LEAIGIPVAD--DNGGCKVLLTARSQDVLSC--KM--DCQQNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 82 ~~~~-------------~----~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~--~~--~~~~~~~l~~L~~~~~~~lf~ 138 (674)
+... . ...+...+.. ...+..+|.||........ .. .....+.++..+.++..+++.
T Consensus 108 d~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~ 187 (262)
T 2qz4_A 108 DAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFE 187 (262)
T ss_dssp -------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHH
T ss_pred chhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHH
Confidence 7530 0 1122111111 1235566667765443211 11 234577899999999999998
Q ss_pred HHhCCCCCCCchhHHHHHHHHHhCCchh-hHHHHH
Q 048755 139 KMTGDCIENGELKSVATEVVKECAGLPI-AIVPVA 172 (674)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~~ 172 (674)
..+...............++..+.|.+- .+..+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 188 QHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp HHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred HHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 7764221222222234677888877653 444443
No 180
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.59 E-value=7.8e-05 Score=71.29 Aligned_cols=78 Identities=27% Similarity=0.278 Sum_probs=45.3
Q ss_pred cCCCcceEEEecCcccCCC---CcccccccCCcEEEcCCcCCCCcccccCcC--CccEEecCCCCchh-ch-------Hh
Q 048755 351 TGMTELRVLDFTEMHLLAL---PSSLGLLQNLQTLSLDFCILGDIAIIGDLK--KLEILTLRGSDMEK-LV-------EE 417 (674)
Q Consensus 351 ~~~~~Lr~L~l~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~-lp-------~~ 417 (674)
..+++|+.|+|++|.+..+ |..+..+++|++|+|++|.+.....+..+. +|++|++.+|.+.. +| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3466677777777766644 244556677777777777666544444444 66666666665542 22 22
Q ss_pred hcCCCCCcEEe
Q 048755 418 MGELTQLRLLD 428 (674)
Q Consensus 418 ~~~l~~L~~L~ 428 (674)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555565554
No 181
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.58 E-value=0.00066 Score=66.40 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... .+.++.+.-.. ... .........+.......++.+|++||+
T Consensus 60 ~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEi 119 (285)
T 3h4m_A 60 PGTGKTLLAKAVATETNAT-----FIRVVGSELVK--------------KFI-GEGASLVKDIFKLAKEKAPSIIFIDEI 119 (285)
T ss_dssp SSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC--------------CST-THHHHHHHHHHHHHHHTCSEEEEEETT
T ss_pred CCCcHHHHHHHHHHHhCCC-----EEEEehHHHHH--------------hcc-chHHHHHHHHHHHHHHcCCeEEEEECH
Confidence 6999999999999876533 23333322110 000 111122334444444556789999999
Q ss_pred CCc------------c----chhhccCCcC--CCCCCeEEEEEeCChhhhh----ccCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGS------------L----DLEAIGIPVA--DDNGGCKVLLTARSQDVLS----CKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~------------~----~~~~l~~~~~--~~~~gs~ilvTtr~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+.. . .+..+...+. ....+..||.||....... ........+.++..+.++..+++..
T Consensus 120 d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~ 199 (285)
T 3h4m_A 120 DAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKI 199 (285)
T ss_dssp HHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHH
T ss_pred HHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHH
Confidence 642 0 1111111111 1233566777776553331 0112334789999999999999998
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCC-chhhHHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAG-LPIAIVPVA 172 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g-~Plal~~~~ 172 (674)
.+........ .....++....| .|-.+..+.
T Consensus 200 ~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l~ 231 (285)
T 3h4m_A 200 HTRKMNLAED--VNLEEIAKMTEGCVGAELKAIC 231 (285)
T ss_dssp HHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHHH
T ss_pred HHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHHH
Confidence 8753221111 124677777777 454555443
No 182
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.48 E-value=6.7e-05 Score=71.43 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=83.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+.+++..... ...++|++++..... +. ...+.+ .++.+||+||+
T Consensus 61 ~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~-----------------~~~~~~--~~~~vliiDe~ 113 (242)
T 3bos_A 61 VKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST-----------------ALLEGL--EQFDLICIDDV 113 (242)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG-----------------GGGTTG--GGSSEEEEETG
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH-----------------HHHHhc--cCCCEEEEecc
Confidence 6999999999999987755 345677776542210 00 000111 24678999999
Q ss_pred CCcc--c--hhhccCCcCC-CCCC-eEEEEEeCChhh-hh-------ccCCCcceEecCCCCHHHHHHHHHHHhCCCCCC
Q 048755 82 WGSL--D--LEAIGIPVAD-DNGG-CKVLLTARSQDV-LS-------CKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIEN 147 (674)
Q Consensus 82 ~~~~--~--~~~l~~~~~~-~~~g-s~ilvTtr~~~~-~~-------~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 147 (674)
+... . .+.+...+.. ...+ .++|+||+.... .. ........+.+++++.++..+++...+.... .
T Consensus 114 ~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~ 192 (242)
T 3bos_A 114 DAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-L 192 (242)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-C
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-C
Confidence 7542 1 1222111111 0112 247777764321 00 0001126789999999999999988764111 1
Q ss_pred CchhHHHHHHHHHhCCchhhHHHHH
Q 048755 148 GELKSVATEVVKECAGLPIAIVPVA 172 (674)
Q Consensus 148 ~~~~~~~~~i~~~c~g~Plal~~~~ 172 (674)
.-..+..+.+++.++|.+..+..+.
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 2234677889999999887665543
No 183
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.40 E-value=0.00031 Score=73.19 Aligned_cols=154 Identities=12% Similarity=0.124 Sum_probs=88.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||||+.+++.......-..+++++.. ++...+...+.... ...+..... .+.-+|++||+
T Consensus 139 ~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~vL~IDEi 203 (440)
T 2z4s_A 139 VGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK--------LNEFREKYR-KKVDILLIDDV 203 (440)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC--------HHHHHHHHT-TTCSEEEEECG
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc--------HHHHHHHhc-CCCCEEEEeCc
Confidence 6999999999999987654111235555543 23444444432211 112222222 25679999999
Q ss_pred CCccc----hhhccCCcCC-CCCCeEEEEEeCChhhh--------hccCCCcceEecCCCCHHHHHHHHHHHhC--CCCC
Q 048755 82 WGSLD----LEAIGIPVAD-DNGGCKVLLTARSQDVL--------SCKMDCQQNFVVDVLNEKEAWSLFKKMTG--DCIE 146 (674)
Q Consensus 82 ~~~~~----~~~l~~~~~~-~~~gs~ilvTtr~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~--~~~~ 146 (674)
+.... .+.+...+.. ...|..||+||.+.... .........+.+++++.++...++.+.+. +..-
T Consensus 204 ~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i 283 (440)
T 2z4s_A 204 QFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGEL 283 (440)
T ss_dssp GGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC
T ss_pred ccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 65321 1222211111 13466788888763221 11112235789999999999999988763 1111
Q ss_pred CCchhHHHHHHHHHhCCchhhHHHHHH
Q 048755 147 NGELKSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 147 ~~~~~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
..++...|++.+.|.+..+..+..
T Consensus 284 ---~~e~l~~la~~~~gn~R~l~~~L~ 307 (440)
T 2z4s_A 284 ---PEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_dssp ---CTTHHHHHHHHCCSCHHHHHHHHH
T ss_pred ---CHHHHHHHHHhcCCCHHHHHHHHH
Confidence 234577888999998876554433
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.0043 Score=61.59 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... ..+.++.+.-.+ ..... .......+.+.....++.+|++|++
T Consensus 54 pGtGKT~la~ala~~~~~~----~~~~i~~~~l~~--------------~~~g~-~~~~~~~lf~~a~~~~~~vl~iDEi 114 (322)
T 1xwi_A 54 PGTGKSYLAKAVATEANNS----TFFSISSSDLVS--------------KWLGE-SEKLVKNLFQLARENKPSIIFIDEI 114 (322)
T ss_dssp SSSCHHHHHHHHHHHTTSC----EEEEEECCSSCC--------------SSCCS-CHHHHHHHHHHHHHTSSEEEEEETT
T ss_pred CCccHHHHHHHHHHHcCCC----cEEEEEhHHHHh--------------hhhhH-HHHHHHHHHHHHHhcCCcEEEeecH
Confidence 6999999999999976321 233444432211 00111 1223344444444557899999999
Q ss_pred CCcc--------c-----hhhccCCc---CCCCCCeEEEEEeCChhhhhc--cCCCcceEecCCCCHHHHHHHHHHHhCC
Q 048755 82 WGSL--------D-----LEAIGIPV---ADDNGGCKVLLTARSQDVLSC--KMDCQQNFVVDVLNEKEAWSLFKKMTGD 143 (674)
Q Consensus 82 ~~~~--------~-----~~~l~~~~---~~~~~gs~ilvTtr~~~~~~~--~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 143 (674)
+... + ...+...+ .....+..||.||........ ..+....+.++..+.++..+++..++..
T Consensus 115 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 115 DSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT 194 (322)
T ss_dssp TGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 7541 0 11111111 112345556666654432210 1134457888999999999999887753
Q ss_pred CCCCCchhHHHHHHHHHhCCc-hhhHHHHH
Q 048755 144 CIENGELKSVATEVVKECAGL-PIAIVPVA 172 (674)
Q Consensus 144 ~~~~~~~~~~~~~i~~~c~g~-Plal~~~~ 172 (674)
... .........+++.+.|. +-.+..+.
T Consensus 195 ~~~-~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 195 TQN-SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp CCB-CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 221 11235577888888886 44455554
No 185
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.38 E-value=0.0013 Score=68.31 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=82.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||+|+.+++..... | +-++... ....++ +.+++ ........+++.+|++|++
T Consensus 59 pGtGKTtlAr~ia~~~~~~--f---~~l~a~~-~~~~~i-r~~~~----------------~a~~~~~~~~~~iLfIDEI 115 (447)
T 3pvs_A 59 PGTGKTTLAEVIARYANAD--V---ERISAVT-SGVKEI-REAIE----------------RARQNRNAGRRTILFVDEV 115 (447)
T ss_dssp TTSSHHHHHHHHHHHTTCE--E---EEEETTT-CCHHHH-HHHHH----------------HHHHHHHTTCCEEEEEETT
T ss_pred CCCcHHHHHHHHHHHhCCC--e---EEEEecc-CCHHHH-HHHHH----------------HHHHhhhcCCCcEEEEeCh
Confidence 6999999999999987543 3 2222221 122221 11111 1111122457899999999
Q ss_pred CCc--cchhhccCCcCCCCCCeEEEEEeCChhhh--hccCCCcceEecCCCCHHHHHHHHHHHhCCC------CCCCchh
Q 048755 82 WGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL--SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDC------IENGELK 151 (674)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~------~~~~~~~ 151 (674)
+.. .+.+.+...+.. +.-..|..||.+.... .........+.+++++.++...++.+.+... ....-..
T Consensus 116 ~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~ 194 (447)
T 3pvs_A 116 HRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPD 194 (447)
T ss_dssp TCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCH
T ss_pred hhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCH
Confidence 764 233333322222 2222233355554321 1112334588999999999999998776421 1122345
Q ss_pred HHHHHHHHHhCCchhhHHHHHHHH
Q 048755 152 SVATEVVKECAGLPIAIVPVAKAL 175 (674)
Q Consensus 152 ~~~~~i~~~c~g~Plal~~~~~~l 175 (674)
+..+.+++.++|.+..+..+...+
T Consensus 195 ~al~~L~~~~~Gd~R~lln~Le~a 218 (447)
T 3pvs_A 195 ETRRAIAELVNGDARRALNTLEMM 218 (447)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHH
Confidence 678888889999887655544433
No 186
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.35 E-value=0.00049 Score=69.68 Aligned_cols=165 Identities=15% Similarity=0.133 Sum_probs=88.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccC-ceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF-EKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+||||+|+.+++.......+ ..++.++.+.......+.+.+.............. .......+++-++++|+
T Consensus 67 ~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE 141 (353)
T 1sxj_D 67 PGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDE 141 (353)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETT
T ss_pred CCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchh-----hcccCCCCCceEEEEEC
Confidence 6999999999999986532111 12444555543333332222211111110000000 00001123567999999
Q ss_pred CCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHH
Q 048755 81 IWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEV 157 (674)
Q Consensus 81 v~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i 157 (674)
++... ..+.+...+.......++|++|...... .........+++.+++.++..+.+...+.... ..-..+..+.+
T Consensus 142 ~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l 220 (353)
T 1sxj_D 142 ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN-VKCDDGVLERI 220 (353)
T ss_dssp GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHH
Confidence 87542 2333333333334466777777554322 11112234789999999999999988764211 11235678899
Q ss_pred HHHhCCchhhHHHHH
Q 048755 158 VKECAGLPIAIVPVA 172 (674)
Q Consensus 158 ~~~c~g~Plal~~~~ 172 (674)
++.++|.|..+..+.
T Consensus 221 ~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 221 LDISAGDLRRGITLL 235 (353)
T ss_dssp HHHTSSCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHH
Confidence 999999998654443
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.34 E-value=0.0023 Score=63.65 Aligned_cols=150 Identities=18% Similarity=0.162 Sum_probs=83.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... | +.++.+. +.. .... ........+.......++.+|+||++
T Consensus 60 pGtGKT~la~aia~~~~~~--~---~~v~~~~------l~~--------~~~g-~~~~~~~~~f~~a~~~~~~vl~iDEi 119 (322)
T 3eie_A 60 PGTGKSYLAKAVATEANST--F---FSVSSSD------LVS--------KWMG-ESEKLVKQLFAMARENKPSIIFIDQV 119 (322)
T ss_dssp SSSCHHHHHHHHHHHHTCE--E---EEEEHHH------HHT--------TTGG-GHHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CCCcHHHHHHHHHHHHCCC--E---EEEchHH------Hhh--------cccc-hHHHHHHHHHHHHHhcCCeEEEechh
Confidence 6999999999999976533 2 3333321 110 0001 11223334444445557799999999
Q ss_pred CCccc-------------hhhccC---CcCCCCCCeEEEEEeCChhhhhc--cCCCcceEecCCCCHHHHHHHHHHHhCC
Q 048755 82 WGSLD-------------LEAIGI---PVADDNGGCKVLLTARSQDVLSC--KMDCQQNFVVDVLNEKEAWSLFKKMTGD 143 (674)
Q Consensus 82 ~~~~~-------------~~~l~~---~~~~~~~gs~ilvTtr~~~~~~~--~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 143 (674)
+.... ...+.. .+.....+..||.||........ ..+....+.++..+.++-.+++..++..
T Consensus 120 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 120 DALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp GGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 74310 111211 11123345566667765433210 1133456788889999999999988864
Q ss_pred CCCCCchhHHHHHHHHHhCC-chhhHHHHH
Q 048755 144 CIENGELKSVATEVVKECAG-LPIAIVPVA 172 (674)
Q Consensus 144 ~~~~~~~~~~~~~i~~~c~g-~Plal~~~~ 172 (674)
... .........+++.+.| .+-.+..+.
T Consensus 200 ~~~-~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 200 TPC-VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CCC-CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 221 1123456788888877 454555443
No 188
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.31 E-value=0.00027 Score=67.58 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=43.4
Q ss_pred ccccCCcEEEcCCcCCCCccc----ccCcCCccEEecCCCCchhchHhhcCCC--CCcEEeCCCCCCCCCCCh------h
Q 048755 374 GLLQNLQTLSLDFCILGDIAI----IGDLKKLEILTLRGSDMEKLVEEMGELT--QLRLLDLSYCFNLQVIPP------N 441 (674)
Q Consensus 374 ~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~lp~~~~~l~--~L~~L~l~~~~~~~~~~~------~ 441 (674)
..+++|++|+|++|.+..+.. +..+++|+.|+|++|.+..+. .+..+. +|++|++++|+....+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 346677777777776665322 335666777777666666542 223333 666666666654333331 2
Q ss_pred hhhCCCCCCeEE
Q 048755 442 VISSLSRLEELY 453 (674)
Q Consensus 442 ~l~~l~~L~~L~ 453 (674)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245555555554
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.26 E-value=0.0037 Score=63.10 Aligned_cols=151 Identities=10% Similarity=0.073 Sum_probs=82.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... .+.++++.-.. .... ........+.......++.+|+||++
T Consensus 126 pGtGKT~la~aia~~~~~~-----~~~i~~~~l~~--------------~~~g-~~~~~~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 126 PGTGKTLIGKCIASQSGAT-----FFSISASSLTS--------------KWVG-EGEKMVRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp TTSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC--------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred CCCCHHHHHHHHHHHcCCe-----EEEEehHHhhc--------------cccc-hHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 6999999999999876422 34555543211 0000 01112233333344456899999998
Q ss_pred CCc-------------cchhhccCCcC----CCCCCeEEEEEeCChhhhh--ccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGS-------------LDLEAIGIPVA----DDNGGCKVLLTARSQDVLS--CKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~-------------~~~~~l~~~~~----~~~~gs~ilvTtr~~~~~~--~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+.. .....+...+. ....+..||.||....... ...+....+.+...+.++..+++...+.
T Consensus 186 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 186 DSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp HHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh
Confidence 432 01112211111 1223455666665443221 1113345778899999999999887763
Q ss_pred CCCCCCchhHHHHHHHHHhCC-chhhHHHHHH
Q 048755 143 DCIENGELKSVATEVVKECAG-LPIAIVPVAK 173 (674)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~c~g-~Plal~~~~~ 173 (674)
... .....+....+++.+.| .+-.+..+..
T Consensus 266 ~~~-~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 266 KEQ-CCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp TSC-BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred hcC-CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 211 11224567888999888 5556665543
No 190
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.20 E-value=0.00036 Score=63.56 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=60.3
Q ss_pred CCCcHHHHHHHHHHhhhhcc-----cCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENN-----LFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l-~~~kr~L 75 (674)
+|+|||++|+++++...... ....+++++++... ...............+.+.+ ..+++.+
T Consensus 52 ~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v 118 (195)
T 1jbk_A 52 PGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-------------AGAKYRGEFEERLKGVLNDLAKQEGNVI 118 (195)
T ss_dssp TTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-------------TTTCSHHHHHHHHHHHHHHHHHSTTTEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh-------------ccCCccccHHHHHHHHHHHHhhcCCCeE
Confidence 69999999999999875421 01234555442110 00000011111223333333 2456889
Q ss_pred EEEeCCCCcc---------chhhccCCcCCCCCCeEEEEEeCChhhh------hccCCCcceEecCCCCHHHHHHHH
Q 048755 76 IILDDIWGSL---------DLEAIGIPVADDNGGCKVLLTARSQDVL------SCKMDCQQNFVVDVLNEKEAWSLF 137 (674)
Q Consensus 76 lVlDdv~~~~---------~~~~l~~~~~~~~~gs~ilvTtr~~~~~------~~~~~~~~~~~l~~L~~~~~~~lf 137 (674)
||+||++... ++..+...+.. ..+..+|.||...... .........+.+++++.++..+++
T Consensus 119 l~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 119 LFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 9999997541 11111111111 1234566666654321 111122236788888888876653
No 191
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.19 E-value=0.00084 Score=67.02 Aligned_cols=145 Identities=14% Similarity=0.104 Sum_probs=78.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH-hCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK-LGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+|||++|+++++.... .++.++.+... ...+ ++++.. ..... ..+++-++|+||
T Consensus 57 ~G~GKT~la~~la~~l~~-----~~~~i~~~~~~-~~~i-~~~~~~~~~~~~----------------~~~~~~vliiDE 113 (324)
T 3u61_B 57 PGTGKTTVAKALCHDVNA-----DMMFVNGSDCK-IDFV-RGPLTNFASAAS----------------FDGRQKVIVIDE 113 (324)
T ss_dssp TTSSHHHHHHHHHHHTTE-----EEEEEETTTCC-HHHH-HTHHHHHHHBCC----------------CSSCEEEEEEES
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEcccccC-HHHH-HHHHHHHHhhcc----------------cCCCCeEEEEEC
Confidence 699999999999987642 24556654422 2222 222211 10000 013688999999
Q ss_pred CCCcc---chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHH-------HHhCCCCCCCc
Q 048755 81 IWGSL---DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFK-------KMTGDCIENGE 149 (674)
Q Consensus 81 v~~~~---~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~-------~~~~~~~~~~~ 149 (674)
++... ..+.+...+.....+.++|+||...... .........+++++++.++..+++. +.+.... ..-
T Consensus 114 i~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~ 192 (324)
T 3u61_B 114 FDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAI 192 (324)
T ss_dssp CCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCB
T ss_pred CcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCC
Confidence 98753 2333322222223456788877764422 1011123478999999888544332 2221100 111
Q ss_pred hh-HHHHHHHHHhCCchhhHHH
Q 048755 150 LK-SVATEVVKECAGLPIAIVP 170 (674)
Q Consensus 150 ~~-~~~~~i~~~c~g~Plal~~ 170 (674)
.. +....+++.++|.+..+..
T Consensus 193 ~~~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 193 ADMKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp SCHHHHHHHHHHTCSCTTHHHH
T ss_pred CcHHHHHHHHHhCCCCHHHHHH
Confidence 23 6778888888887765443
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.16 E-value=0.0032 Score=63.52 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=82.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... .+.++.+ ++... .... .......+.......++.+|+||++
T Consensus 93 pGtGKT~la~ala~~~~~~-----~~~v~~~------~l~~~--------~~g~-~~~~~~~~f~~a~~~~~~vl~iDEi 152 (355)
T 2qp9_X 93 PGTGKSYLAKAVATEANST-----FFSVSSS------DLVSK--------WMGE-SEKLVKQLFAMARENKPSIIFIDQV 152 (355)
T ss_dssp TTSCHHHHHHHHHHHHTCE-----EEEEEHH------HHHSC--------C----CHHHHHHHHHHHHHTSSEEEEEECG
T ss_pred CCCcHHHHHHHHHHHhCCC-----EEEeeHH------HHhhh--------hcch-HHHHHHHHHHHHHHcCCeEEEEech
Confidence 6999999999999987532 2333332 11110 0011 1122334444444457899999999
Q ss_pred CCccc-------------hhhccCCcC---CCCCCeEEEEEeCChhhhh--ccCCCcceEecCCCCHHHHHHHHHHHhCC
Q 048755 82 WGSLD-------------LEAIGIPVA---DDNGGCKVLLTARSQDVLS--CKMDCQQNFVVDVLNEKEAWSLFKKMTGD 143 (674)
Q Consensus 82 ~~~~~-------------~~~l~~~~~---~~~~gs~ilvTtr~~~~~~--~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 143 (674)
+.... ...+...+. ....+..||.||....... ...+....+.++..+.++..+++..++..
T Consensus 153 d~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 153 DALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp GGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 74310 111211111 1234555666666543221 01134467789999999999999888753
Q ss_pred CCCCCchhHHHHHHHHHhCC-chhhHHHHH
Q 048755 144 CIENGELKSVATEVVKECAG-LPIAIVPVA 172 (674)
Q Consensus 144 ~~~~~~~~~~~~~i~~~c~g-~Plal~~~~ 172 (674)
... .........|++.+.| .+-.|..+.
T Consensus 233 ~~~-~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 233 TPS-VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp SCB-CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 211 1123456788899888 455555554
No 193
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.11 E-value=0.0016 Score=66.36 Aligned_cols=51 Identities=6% Similarity=-0.104 Sum_probs=35.9
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhC-CchhhHHHHH
Q 048755 121 QNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECA-GLPIAIVPVA 172 (674)
Q Consensus 121 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~-g~Plal~~~~ 172 (674)
..+.+++++.++..+++...+.... ..-..+....+++.+. |.|..+..+.
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~-~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEED-VEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4579999999999999987764211 1233567788888887 8776554443
No 194
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.09 E-value=0.00077 Score=66.78 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=67.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+.+++...........-++.++.. .+....... .......+.... +..+|++|++
T Consensus 76 ~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------------~l~~~~~g~-~~~~~~~~~~~~---~~~vl~iDEi 139 (309)
T 3syl_A 76 PGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD------------DLVGQYIGH-TAPKTKEVLKRA---MGGVLFIDEA 139 (309)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG------------GTCCSSTTC-HHHHHHHHHHHH---TTSEEEEETG
T ss_pred CCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH------------Hhhhhcccc-cHHHHHHHHHhc---CCCEEEEECh
Confidence 699999999999998765433222223333210 010110111 111122222222 3459999999
Q ss_pred CCc-----------cchhhccCCcCCCCCCeEEEEEeCChhhh-------hccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGS-----------LDLEAIGIPVADDNGGCKVLLTARSQDVL-------SCKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~-----------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+.. .....+...+.....+..+|.||...... ....+....+.+++++.++...++...+.
T Consensus 140 d~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 140 YYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp GGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 732 22333333333344466777777543210 00112336889999999999999987764
No 195
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.06 E-value=0.0034 Score=62.98 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=80.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... .+.++.+......++ ...... ..+..+|++|++
T Consensus 64 ~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~---------------------~~~~~~--~~~~~vl~lDEi 115 (338)
T 3pfi_A 64 AGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDL---------------------AAILTN--LSEGDILFIDEI 115 (338)
T ss_dssp TTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHH---------------------HHHHHT--CCTTCEEEEETG
T ss_pred CCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHH---------------------HHHHHh--ccCCCEEEEech
Confidence 6999999999998875432 233443322111111 111111 135678899998
Q ss_pred CCcc--chhhccCCcCC------------------CCCCeEEEEEeCChhhhh--ccCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL--DLEAIGIPVAD------------------DNGGCKVLLTARSQDVLS--CKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~--~~~~l~~~~~~------------------~~~gs~ilvTtr~~~~~~--~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... ....+...+.. ..++.++|.+|....... ...+....+.+++++.++..+++.+
T Consensus 116 ~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~ 195 (338)
T 3pfi_A 116 HRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQK 195 (338)
T ss_dssp GGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHH
Confidence 7541 11111111111 011245666665433221 0123346899999999999999987
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIAIVPVAKA 174 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~~ 174 (674)
.+.... .....+..+.+++.+.|.|..+..+...
T Consensus 196 ~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~ 229 (338)
T 3pfi_A 196 AALKLN-KTCEEKAALEIAKRSRSTPRIALRLLKR 229 (338)
T ss_dssp HHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 774211 1223567788888999999666554443
No 196
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.04 E-value=0.0011 Score=67.16 Aligned_cols=101 Identities=6% Similarity=0.007 Sum_probs=62.6
Q ss_pred CcEEEEEeCCCCcc--chhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 72 TKILIILDDIWGSL--DLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 72 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
++-++|+|++.... ..+.+...+.....+..+|++|.+.... .........+++++++.++..+.+...+.... ..
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-IQ 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CE
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-CC
Confidence 57799999998642 2233322222223467788877764322 11123347899999999999999987763110 01
Q ss_pred ch-hHHHHHHHHHhCCchhhHHHHHH
Q 048755 149 EL-KSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 149 ~~-~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
-. .+....|++.++|.+..+..+..
T Consensus 213 ~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 213 LETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp ECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 12 36678899999999876555443
No 197
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.98 E-value=0.01 Score=60.62 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... ++.++++.-.... ... .......+.......++.+|+||++
T Consensus 157 pGtGKT~la~aia~~~~~~-----~~~v~~~~l~~~~--------------~g~-~~~~~~~~~~~a~~~~~~il~iDEi 216 (389)
T 3vfd_A 157 PGNGKTMLAKAVAAESNAT-----FFNISAASLTSKY--------------VGE-GEKLVRALFAVARELQPSIIFIDQV 216 (389)
T ss_dssp TTSCHHHHHHHHHHHTTCE-----EEEECSCCC----------------------CHHHHHHHHHHHHHSSSEEEEEETG
T ss_pred CCCCHHHHHHHHHHhhcCc-----EEEeeHHHhhccc--------------cch-HHHHHHHHHHHHHhcCCeEEEEECc
Confidence 6999999999998875422 3444443322100 000 1122333444444446789999999
Q ss_pred CCc--------cc-----hhhccCCc---CC-CCCCeEEEEEeCChhhhh--ccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGS--------LD-----LEAIGIPV---AD-DNGGCKVLLTARSQDVLS--CKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~--------~~-----~~~l~~~~---~~-~~~gs~ilvTtr~~~~~~--~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+.. .. ...+...+ .. ...+..||.||....... ...+....+.+...+.++..+++...+.
T Consensus 217 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 217 DSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC 296 (389)
T ss_dssp GGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT
T ss_pred hhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH
Confidence 643 00 11111111 11 122345555665433221 0113334688999999999999988775
Q ss_pred CCCCCCchhHHHHHHHHHhCCchh-hHHHHH
Q 048755 143 DCIENGELKSVATEVVKECAGLPI-AIVPVA 172 (674)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~~ 172 (674)
.... ....+....+++.+.|..- ++..+.
T Consensus 297 ~~~~-~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 297 KQGS-PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp TSCC-CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hcCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3211 2234567788888888543 554443
No 198
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.94 E-value=0.00094 Score=71.20 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=81.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+.+++... + .++.++++.......+ ...+........-..-...... .....+++.+||+|++
T Consensus 86 pGtGKTtla~~la~~l~----~-~~i~in~s~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEi 157 (516)
T 1sxj_A 86 PGIGKTTAAHLVAQELG----Y-DILEQNASDVRSKTLL-NAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEV 157 (516)
T ss_dssp TTSSHHHHHHHHHHHTT----C-EEEEECTTSCCCHHHH-HHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSG
T ss_pred CCCCHHHHHHHHHHHcC----C-CEEEEeCCCcchHHHH-HHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECC
Confidence 69999999999999873 2 2455666655444322 2222211111000000000000 0012357899999999
Q ss_pred CCccc-----hhhccCCcCCCCCCeEEEEEeCChh--hhhccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHH
Q 048755 82 WGSLD-----LEAIGIPVADDNGGCKVLLTARSQD--VLSCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVA 154 (674)
Q Consensus 82 ~~~~~-----~~~l~~~~~~~~~gs~ilvTtr~~~--~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~ 154 (674)
+.... +..+...+.. .+..||+++.+.. ...........+.+++++.++..+++.+.+..... .-..+..
T Consensus 158 d~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~~~l 234 (516)
T 1sxj_A 158 DGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDPNVI 234 (516)
T ss_dssp GGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCTTHH
T ss_pred CccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHH
Confidence 75421 2222211111 1233555554322 11112234567899999999999988876631100 1112457
Q ss_pred HHHHHHhCCchh-hHHHH
Q 048755 155 TEVVKECAGLPI-AIVPV 171 (674)
Q Consensus 155 ~~i~~~c~g~Pl-al~~~ 171 (674)
..|++.++|.+. ++..+
T Consensus 235 ~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 235 DRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp HHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHH
Confidence 789999999554 44444
No 199
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.012 Score=59.22 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=80.9
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|+|||.+|+++++..... | +.|+.+.-.+ ...++. ...+..+........+++|++|+
T Consensus 190 PPGTGKTllAkAiA~e~~~~--f---~~v~~s~l~s--------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDE 249 (405)
T 4b4t_J 190 PPGTGKTLLARAVAHHTDCK--F---IRVSGAELVQ--------------KYIGEG-SRMVRELFVMAREHAPSIIFMDE 249 (405)
T ss_dssp CSSSSHHHHHHHHHHHHTCE--E---EEEEGGGGSC--------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCCCHHHHHHHHHHhhCCC--c---eEEEhHHhhc--------------cccchH-HHHHHHHHHHHHHhCCceEeeec
Confidence 37999999999999987754 3 4444443211 111111 12233444444455799999999
Q ss_pred CCCcc----------c------hhhccCCcC--CCCCCeEEEEEeCChhhh----hccCCCcceEecCCCCHHHHHHHHH
Q 048755 81 IWGSL----------D------LEAIGIPVA--DDNGGCKVLLTARSQDVL----SCKMDCQQNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 81 v~~~~----------~------~~~l~~~~~--~~~~gs~ilvTtr~~~~~----~~~~~~~~~~~l~~L~~~~~~~lf~ 138 (674)
++..- + ...+...+. ....+-.||.||...+.. .+.-+....+.++.-+.++-.++|.
T Consensus 250 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 250 IDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILR 329 (405)
T ss_dssp SSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHH
T ss_pred chhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHH
Confidence 86420 0 111211121 123344566677655443 1112455688899889999999998
Q ss_pred HHhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 139 KMTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
.+........+.. ...+++.+.|.-
T Consensus 330 ~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 330 IHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp HHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred HHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 7775322222111 467788887754
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.91 E-value=0.012 Score=61.32 Aligned_cols=151 Identities=19% Similarity=0.194 Sum_probs=81.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... ..+.++.+.-. .. ..+.. . .....+.......++.+|+||++
T Consensus 176 pGtGKT~lA~aia~~~~~~----~~~~v~~~~l~------~~---~~g~~---~---~~~~~~f~~a~~~~~~vl~iDEi 236 (444)
T 2zan_A 176 PGTGKSYLAKAVATEANNS----TFFSISSSDLV------SK---WLGES---E---KLVKNLFQLARENKPSIIFIDEI 236 (444)
T ss_dssp TTSSHHHHHHHHHHHCCSS----EEEEECCC------------------C---C---CTHHHHHHHHHHSCSEEEEESCT
T ss_pred CCCCHHHHHHHHHHHcCCC----CEEEEeHHHHH------hh---hcchH---H---HHHHHHHHHHHHcCCeEEEEech
Confidence 6999999999999976211 12333332211 10 11111 0 11233334444457899999999
Q ss_pred CCcc-------------chhhccCCcCC---CCCCeEEEEEeCChhhhh--ccCCCcceEecCCCCHHHHHHHHHHHhCC
Q 048755 82 WGSL-------------DLEAIGIPVAD---DNGGCKVLLTARSQDVLS--CKMDCQQNFVVDVLNEKEAWSLFKKMTGD 143 (674)
Q Consensus 82 ~~~~-------------~~~~l~~~~~~---~~~gs~ilvTtr~~~~~~--~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 143 (674)
+... ....+...+.. ...+..||.||....... ...+....+.++..+.++...++..++..
T Consensus 237 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 237 DSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp TTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred HhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 7540 01222222222 234566666776543321 01133457788888999999999888753
Q ss_pred CCCCCchhHHHHHHHHHhCC-chhhHHHHH
Q 048755 144 CIENGELKSVATEVVKECAG-LPIAIVPVA 172 (674)
Q Consensus 144 ~~~~~~~~~~~~~i~~~c~g-~Plal~~~~ 172 (674)
... .........|++.+.| .+-.+..+.
T Consensus 317 ~~~-~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 317 TQN-SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp SCE-ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 211 1123456788888888 454555544
No 201
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.84 E-value=0.021 Score=55.93 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=79.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||+|+++++..... .+.++.+.-.. .... ........+.......++.+|++|++
T Consensus 63 ~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEi 122 (297)
T 3b9p_A 63 PGNGKTLLARAVATECSAT-----FLNISAASLTS--------------KYVG-DGEKLVRALFAVARHMQPSIIFIDEV 122 (297)
T ss_dssp SSSCHHHHHHHHHHHTTCE-----EEEEESTTTSS--------------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred CCCCHHHHHHHHHHHhCCC-----eEEeeHHHHhh--------------cccc-hHHHHHHHHHHHHHHcCCcEEEeccH
Confidence 6999999999999876422 34444433211 0001 11222333334444456889999999
Q ss_pred CCccc-------------hhhccC---CcCC--CCCCeEEEEEeCChhhhhc--cCCCcceEecCCCCHHHHHHHHHHHh
Q 048755 82 WGSLD-------------LEAIGI---PVAD--DNGGCKVLLTARSQDVLSC--KMDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 82 ~~~~~-------------~~~l~~---~~~~--~~~gs~ilvTtr~~~~~~~--~~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
+.... ...+.. .++. .+.+..||.||........ .......+.++..+.++...++...+
T Consensus 123 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~ 202 (297)
T 3b9p_A 123 DSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLL 202 (297)
T ss_dssp GGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHH
Confidence 64310 001111 1111 1234566667765432210 01233567788888888888888766
Q ss_pred CCCCCCCchhHHHHHHHHHhCCchh-hHHHHH
Q 048755 142 GDCIENGELKSVATEVVKECAGLPI-AIVPVA 172 (674)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~~c~g~Pl-al~~~~ 172 (674)
..... ....+....+++.+.|.+- ++..+.
T Consensus 203 ~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 203 QKQGS-PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp GGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 42111 1223567788888988775 554443
No 202
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.79 E-value=0.0028 Score=63.11 Aligned_cols=145 Identities=16% Similarity=0.120 Sum_probs=80.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||||+.+++..... -..++++++. ++...+...+... ....+..... +.-+|++||+
T Consensus 46 ~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~~vL~iDEi 107 (324)
T 1l8q_A 46 VGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKKG--------TINEFRNMYK--SVDLLLLDDV 107 (324)
T ss_dssp SSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHHT--------CHHHHHHHHH--TCSEEEEECG
T ss_pred CCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHhc--CCCEEEEcCc
Confidence 6999999999999987644 1234555543 3333333332111 0112222222 3679999999
Q ss_pred CCcc---ch-hhccCCcCC-CCCCeEEEEEeCChhhh--------hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCC
Q 048755 82 WGSL---DL-EAIGIPVAD-DNGGCKVLLTARSQDVL--------SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENG 148 (674)
Q Consensus 82 ~~~~---~~-~~l~~~~~~-~~~gs~ilvTtr~~~~~--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~ 148 (674)
+... .+ +.+...+.. ...|.+||+||...... .........+++++ +.++...++...+.... ..
T Consensus 108 ~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~-~~ 185 (324)
T 1l8q_A 108 QFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN-LE 185 (324)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT-CC
T ss_pred ccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcC-CC
Confidence 7542 11 222111111 12355788877643221 11112225689999 99999999988774111 12
Q ss_pred chhHHHHHHHHHhCCchhh
Q 048755 149 ELKSVATEVVKECAGLPIA 167 (674)
Q Consensus 149 ~~~~~~~~i~~~c~g~Pla 167 (674)
-..++...+++.+ |....
T Consensus 186 l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 186 LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CCHHHHHHHHHHC-SSHHH
T ss_pred CCHHHHHHHHHhC-CCHHH
Confidence 2246677888888 77654
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.79 E-value=0.0051 Score=61.68 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||+|+.++........-..+.-++.+.......+.+ ++..+..... ...+++-++|+|++
T Consensus 55 ~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~-~i~~~~~~~~--------------~~~~~~~viiiDe~ 119 (340)
T 1sxj_C 55 PGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN-QIKDFASTRQ--------------IFSKGFKLIILDEA 119 (340)
T ss_dssp SSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT-HHHHHHHBCC--------------SSSCSCEEEEETTG
T ss_pred CCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHH-HHHHHHhhcc--------------cCCCCceEEEEeCC
Confidence 69999999999999865331101233344443323322221 1111100000 01124778999998
Q ss_pred CCc--cchhhccCCcCCCCCCeEEEEEeCChhhh-hccCCCcceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHH
Q 048755 82 WGS--LDLEAIGIPVADDNGGCKVLLTARSQDVL-SCKMDCQQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVV 158 (674)
Q Consensus 82 ~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~ 158 (674)
+.. ...+.+...+.......++|++|...... .........+++.+++.++..+.+...+.... ..-..+..+.++
T Consensus 120 ~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~i~~~~~~~i~ 198 (340)
T 1sxj_C 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK-LKLSPNAEKALI 198 (340)
T ss_dssp GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT-CCBCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Confidence 754 22333322222233456677776544321 11112335789999999999988877662111 112245677888
Q ss_pred HHhCCchhh
Q 048755 159 KECAGLPIA 167 (674)
Q Consensus 159 ~~c~g~Pla 167 (674)
+.++|.+..
T Consensus 199 ~~s~G~~r~ 207 (340)
T 1sxj_C 199 ELSNGDMRR 207 (340)
T ss_dssp HHHTTCHHH
T ss_pred HHcCCCHHH
Confidence 888988753
No 204
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.71 E-value=0.16 Score=51.47 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=46.9
Q ss_pred ccceeEeeccccccCCCCCc--CCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCcccCCCCc-ccccccCCcEEEc
Q 048755 308 KVCTAISLFNTNISELPQGF--ECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHLLALPS-SLGLLQNLQTLSL 384 (674)
Q Consensus 308 ~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~l 384 (674)
.+++.+.+. ..+..+++.- .|.+|+.+.+..+ ...+....|.++ .|..+.+..+ +..+.. .+.. .+|+.+.+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 456666664 3455555442 8899999998653 667888888887 5666666432 444432 2333 36888887
Q ss_pred CCc
Q 048755 385 DFC 387 (674)
Q Consensus 385 ~~~ 387 (674)
..+
T Consensus 121 p~~ 123 (379)
T 4h09_A 121 PGA 123 (379)
T ss_dssp CTT
T ss_pred CCc
Confidence 654
No 205
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.56 E-value=0.0014 Score=58.91 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||||+.+++.......+. ++++ +..++...+.......... ...+.+. +.-+|||||+
T Consensus 47 ~G~GKTtL~~~i~~~~~~~~g~~-~~~~------~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~~~llilDE~ 109 (180)
T 3ec2_A 47 PGVGKTHLAVATLKAIYEKKGIR-GYFF------DTKDLIFRLKHLMDEGKDT--------KFLKTVL--NSPVLVLDDL 109 (180)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCCC-CCEE------EHHHHHHHHHHHHHHTCCS--------HHHHHHH--TCSEEEEETC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCe-EEEE------EHHHHHHHHHHHhcCchHH--------HHHHHhc--CCCEEEEeCC
Confidence 69999999999999886432222 3333 3444555544433211111 2233333 4678999999
Q ss_pred CC--ccchhh--ccCCcCC-CCCCeEEEEEeCCh
Q 048755 82 WG--SLDLEA--IGIPVAD-DNGGCKVLLTARSQ 110 (674)
Q Consensus 82 ~~--~~~~~~--l~~~~~~-~~~gs~ilvTtr~~ 110 (674)
+. ...|.. +...+.. ...|..+|+||...
T Consensus 110 ~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 110 GSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 73 233321 1111111 12466788888743
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.0064 Score=59.58 Aligned_cols=122 Identities=17% Similarity=0.087 Sum_probs=75.2
Q ss_pred CCCcHHHHHHHHHHhhhh-cccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKE-NNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILD 79 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~-~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlD 79 (674)
.|+||||+|+.+++.... ......+.+++.++ ...++++ +++.+.+..... .+++-++|+|
T Consensus 27 ~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i-r~li~~~~~~p~----------------~~~~kvviId 89 (305)
T 2gno_A 27 DLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI-RTIKDFLNYSPE----------------LYTRKYVIVH 89 (305)
T ss_dssp SSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH-HHHHHHHTSCCS----------------SSSSEEEEET
T ss_pred CCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH-HHHHHHHhhccc----------------cCCceEEEec
Confidence 699999999999985321 11122345666543 3343333 345555432211 1457789999
Q ss_pred CCCCc--cchhhccCCcCCCCCCeEEEEEeCChhhhhccCCCcceEecCCCCHHHHHHHHHHHh
Q 048755 80 DIWGS--LDLEAIGIPVADDNGGCKVLLTARSQDVLSCKMDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 80 dv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
+++.. ...+++...+......+++|++|.++.-........ .+++++++.++..+.+.+.+
T Consensus 90 ead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 90 DCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred cHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 99865 345555544444556778888776654332122223 89999999999999988776
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.43 E-value=0.029 Score=53.58 Aligned_cols=148 Identities=20% Similarity=0.234 Sum_probs=75.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||+|+.+++..... .+.++.+.-.+ ...... ......+.+......+.++++|++
T Consensus 54 ~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~--------------~~~~~~-~~~~~~~~~~a~~~~~~il~iDei 113 (257)
T 1lv7_A 54 PGTGKTLLAKAIAGEAKVP-----FFTISGSDFVE--------------MFVGVG-ASRVRDMFEQAKKAAPCIIFIDEI 113 (257)
T ss_dssp TTSCHHHHHHHHHHHHTCC-----EEEECSCSSTT--------------SCCCCC-HHHHHHHHHHHHTTCSEEEEETTH
T ss_pred CCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHH--------------Hhhhhh-HHHHHHHHHHHHHcCCeeehhhhh
Confidence 6999999999999876432 23443332111 000111 122334444444456789999998
Q ss_pred CCcc----------------chhhccCCcC--CCCCCeEEEEEeCChhhhh-ccC---CCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL----------------DLEAIGIPVA--DDNGGCKVLLTARSQDVLS-CKM---DCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~----------------~~~~l~~~~~--~~~~gs~ilvTtr~~~~~~-~~~---~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... ....+...+. ....+..||.||...+... ... .....+.++..+.++-.+++..
T Consensus 114 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~ 193 (257)
T 1lv7_A 114 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 193 (257)
T ss_dssp HHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred hhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHH
Confidence 4210 0111111111 1123456666776554221 111 2345677888888888888877
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCC-chhhHHHH
Q 048755 140 MTGDCIENGELKSVATEVVKECAG-LPIAIVPV 171 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g-~Plal~~~ 171 (674)
.+......+.. ....++....| .+--+..+
T Consensus 194 ~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 194 HMRRVPLAPDI--DAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp HHTTSCBCTTC--CHHHHHHTCTTCCHHHHHHH
T ss_pred HHhcCCCCccc--cHHHHHHHcCCCCHHHHHHH
Confidence 66422111111 13456667777 66555443
No 208
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.43 E-value=0.022 Score=58.26 Aligned_cols=143 Identities=23% Similarity=0.276 Sum_probs=78.6
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|+|||++|+++++..... | +.++.+.-.+ ...+. .......+........+++|++|+
T Consensus 223 PPGtGKTllAkAiA~e~~~~--~---~~v~~s~l~s--------------k~~Ge-se~~ir~~F~~A~~~~P~IifiDE 282 (437)
T 4b4t_L 223 PPGTGKTLLAKAVAATIGAN--F---IFSPASGIVD--------------KYIGE-SARIIREMFAYAKEHEPCIIFMDE 282 (437)
T ss_dssp CTTSSHHHHHHHHHHHHTCE--E---EEEEGGGTCC--------------SSSSH-HHHHHHHHHHHHHHSCSEEEEEEC
T ss_pred CCCCcHHHHHHHHHHHhCCC--E---EEEehhhhcc--------------ccchH-HHHHHHHHHHHHHhcCCceeeeec
Confidence 37999999999999987754 3 4444443211 11111 112233444444455799999999
Q ss_pred CCCcc--------c--------hhhccCCcC--CCCCCeEEEEEeCChhhhhc-cCC---CcceEecCCCCHHHHHHHHH
Q 048755 81 IWGSL--------D--------LEAIGIPVA--DDNGGCKVLLTARSQDVLSC-KMD---CQQNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 81 v~~~~--------~--------~~~l~~~~~--~~~~gs~ilvTtr~~~~~~~-~~~---~~~~~~l~~L~~~~~~~lf~ 138 (674)
++..- . ...+...+. ....+..||.||...+.... ..+ ....+.++.-+.++-.++|.
T Consensus 283 iDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 283 VDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp CCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHH
T ss_pred ccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHH
Confidence 86320 0 111222221 12234567777765554311 112 34577888888888888888
Q ss_pred HHhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 139 KMTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
.+.......... + ...+++.+.|.-
T Consensus 363 ~~~~~~~~~~d~-d-l~~lA~~t~G~s 387 (437)
T 4b4t_L 363 IHTAKVKKTGEF-D-FEAAVKMSDGFN 387 (437)
T ss_dssp HHHHTSCBCSCC-C-HHHHHHTCCSCC
T ss_pred HHhcCCCCCccc-C-HHHHHHhCCCCC
Confidence 776422111111 1 456777777754
No 209
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.056 Score=55.25 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=77.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... | +.++.+.-. ....++. ......+........+++|++|++
T Consensus 252 PGTGKTlLAkAiA~e~~~~--f---i~vs~s~L~--------------sk~vGes-ek~ir~lF~~Ar~~aP~IIfiDEi 311 (467)
T 4b4t_H 252 PGTGKTLCARAVANRTDAT--F---IRVIGSELV--------------QKYVGEG-ARMVRELFEMARTKKACIIFFDEI 311 (467)
T ss_dssp TTSSHHHHHHHHHHHHTCE--E---EEEEGGGGC--------------CCSSSHH-HHHHHHHHHHHHHTCSEEEEEECC
T ss_pred CCCcHHHHHHHHHhccCCC--e---EEEEhHHhh--------------cccCCHH-HHHHHHHHHHHHhcCCceEeeccc
Confidence 7999999999999987754 3 444443211 1111111 122334444444557999999998
Q ss_pred CCcc--------c--------hhhccCCcCC--CCCCeEEEEEeCChhhh----hccCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL--------D--------LEAIGIPVAD--DNGGCKVLLTARSQDVL----SCKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~--------~--------~~~l~~~~~~--~~~gs~ilvTtr~~~~~----~~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+..- . ...+...+.. ...+-.||.||-..+.. .+.-+....+.++.-+.++-.++|..
T Consensus 312 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~ 391 (467)
T 4b4t_H 312 DAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRI 391 (467)
T ss_dssp TTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHH
T ss_pred ccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHH
Confidence 6320 0 0111111111 22344555566544433 11113456888888899999999987
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
++......... + ...+++.+.|.-
T Consensus 392 ~l~~~~l~~dv-d-l~~LA~~T~GfS 415 (467)
T 4b4t_H 392 HSKSMSVERGI-R-WELISRLCPNST 415 (467)
T ss_dssp HHTTSCBCSSC-C-HHHHHHHCCSCC
T ss_pred HhcCCCCCCCC-C-HHHHHHHCCCCC
Confidence 77532211111 1 456778887753
No 210
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.029 Score=56.77 Aligned_cols=142 Identities=15% Similarity=0.191 Sum_probs=77.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||.+|+++++..... | +.++.+.-. ....++ .......+........+++|++|++
T Consensus 225 PGTGKTlLAkAiA~e~~~~--f---i~v~~s~l~--------------sk~vGe-sek~ir~lF~~Ar~~aP~IIfiDEi 284 (437)
T 4b4t_I 225 PGTGKTLLAKAVANQTSAT--F---LRIVGSELI--------------QKYLGD-GPRLCRQIFKVAGENAPSIVFIDEI 284 (437)
T ss_dssp TTTTHHHHHHHHHHHHTCE--E---EEEESGGGC--------------CSSSSH-HHHHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CCchHHHHHHHHHHHhCCC--E---EEEEHHHhh--------------hccCch-HHHHHHHHHHHHHhcCCcEEEEehh
Confidence 7999999999999987754 3 334443211 111111 1122334444444557899999998
Q ss_pred CCc-------c-----c----hhhccCCcC--CCCCCeEEEEEeCChhhhhc-cC---CCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGS-------L-----D----LEAIGIPVA--DDNGGCKVLLTARSQDVLSC-KM---DCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~-------~-----~----~~~l~~~~~--~~~~gs~ilvTtr~~~~~~~-~~---~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+.. . . ...+...+. ....+-.||.||-..+.... .. +....+.++.-+.++-.++|..
T Consensus 285 Dai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~ 364 (437)
T 4b4t_I 285 DAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGI 364 (437)
T ss_dssp SSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHH
T ss_pred hhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHH
Confidence 632 0 0 111111111 12234566667765554421 11 2334677888888888899987
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
++......++. + ...+++.+.|.-
T Consensus 365 ~l~~~~l~~dv-d-l~~LA~~T~GfS 388 (437)
T 4b4t_I 365 HTSKMNLSEDV-N-LETLVTTKDDLS 388 (437)
T ss_dssp HHTTSCBCSCC-C-HHHHHHHCCSCC
T ss_pred HhcCCCCCCcC-C-HHHHHHhCCCCC
Confidence 77532211111 1 456777877753
No 211
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.32 E-value=0.024 Score=55.59 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... .+.++. .++.... .+.. ......+.+......+.+|++|++
T Consensus 58 ~GtGKT~la~ala~~~~~~-----~i~v~~------~~l~~~~---~g~~------~~~~~~~f~~a~~~~p~il~iDEi 117 (301)
T 3cf0_A 58 PGCGKTLLAKAIANECQAN-----FISIKG------PELLTMW---FGES------EANVREIFDKARQAAPCVLFFDEL 117 (301)
T ss_dssp SSSSHHHHHHHHHHHTTCE-----EEEECH------HHHHHHH---HTTC------TTHHHHHHHHHHHTCSEEEEECST
T ss_pred CCcCHHHHHHHHHHHhCCC-----EEEEEh------HHHHhhh---cCch------HHHHHHHHHHHHhcCCeEEEEECh
Confidence 6999999999999976522 233322 2232221 2211 112233444444456899999999
Q ss_pred CCcc----------------chhhccCCcC--CCCCCeEEEEEeCChhhhhc-cC---CCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL----------------DLEAIGIPVA--DDNGGCKVLLTARSQDVLSC-KM---DCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~----------------~~~~l~~~~~--~~~~gs~ilvTtr~~~~~~~-~~---~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... ....+...+. ....+..||.||...+.... .. .....+.++..+.++-.+++..
T Consensus 118 d~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~ 197 (301)
T 3cf0_A 118 DSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 197 (301)
T ss_dssp THHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred HHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHH
Confidence 7320 0112211111 12335667777765533211 11 2345788999999999999887
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCchhh
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLPIA 167 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~Pla 167 (674)
.+......... -...++..+.|.|-+
T Consensus 198 ~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 198 NLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp HHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred HHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 77522111111 134556667776643
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.15 E-value=0.015 Score=59.43 Aligned_cols=143 Identities=14% Similarity=0.166 Sum_probs=75.8
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|+|||.+|+++++..... | +.++.+.-. ....+.. ......+........+++|++|+
T Consensus 223 PPGTGKTllAkAiA~e~~~~--f---~~v~~s~l~--------------~~~vGes-e~~ir~lF~~A~~~aP~IifiDE 282 (434)
T 4b4t_M 223 PPGTGKTLLARACAAQTNAT--F---LKLAAPQLV--------------QMYIGEG-AKLVRDAFALAKEKAPTIIFIDE 282 (434)
T ss_dssp CTTSSHHHHHHHHHHHHTCE--E---EEEEGGGGC--------------SSCSSHH-HHHHHHHHHHHHHHCSEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHhCCC--E---EEEehhhhh--------------hcccchH-HHHHHHHHHHHHhcCCeEEeecc
Confidence 37999999999999987754 3 444443311 1111111 12223333333344689999999
Q ss_pred CCCc-------c-----c----hhhccCCcCCC--CCCeEEEEEeCChhhhhcc-C---CCcceEecCCCCHHHHHHHHH
Q 048755 81 IWGS-------L-----D----LEAIGIPVADD--NGGCKVLLTARSQDVLSCK-M---DCQQNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 81 v~~~-------~-----~----~~~l~~~~~~~--~~gs~ilvTtr~~~~~~~~-~---~~~~~~~l~~L~~~~~~~lf~ 138 (674)
++.. . . ...+...+... ..+-.||.||...+..... . +....+.++.-+.++-.++|.
T Consensus 283 iDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 283 LDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp THHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHH
T ss_pred hhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHH
Confidence 8521 0 0 11122222221 2344566677655443211 1 234578888888888888887
Q ss_pred HHhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 139 KMTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
.++......+.. + ...+++.+.|.-
T Consensus 363 ~~~~~~~~~~dv-d-l~~lA~~t~G~s 387 (434)
T 4b4t_M 363 IHSRKMTTDDDI-N-WQELARSTDEFN 387 (434)
T ss_dssp HHHHHSCBCSCC-C-HHHHHHHCSSCC
T ss_pred HHhcCCCCCCcC-C-HHHHHHhCCCCC
Confidence 666311111111 1 456778887753
No 213
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.05 E-value=0.068 Score=55.58 Aligned_cols=142 Identities=19% Similarity=0.235 Sum_probs=76.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||+||+++++..... | +.++.+.-... .... .......+......+.+.+|++|++
T Consensus 58 pGtGKT~Laraia~~~~~~--f---~~is~~~~~~~--------------~~g~-~~~~~r~lf~~A~~~~p~ILfIDEi 117 (476)
T 2ce7_A 58 PGTGKTLLARAVAGEANVP--F---FHISGSDFVEL--------------FVGV-GAARVRDLFAQAKAHAPCIVFIDEI 117 (476)
T ss_dssp TTSSHHHHHHHHHHHHTCC--E---EEEEGGGTTTC--------------CTTH-HHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred CCCCHHHHHHHHHHHcCCC--e---eeCCHHHHHHH--------------Hhcc-cHHHHHHHHHHHHhcCCCEEEEech
Confidence 6999999999999976532 2 34444322110 0000 1122333444444557899999998
Q ss_pred CCcc----------------chhhccCCcC--CCCCCeEEEEEeCChhhhhc-cC---CCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL----------------DLEAIGIPVA--DDNGGCKVLLTARSQDVLSC-KM---DCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~----------------~~~~l~~~~~--~~~~gs~ilvTtr~~~~~~~-~~---~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... ....+...+. ....+..||.||...+.... .. .....+.++..+.++-.+++..
T Consensus 118 d~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~ 197 (476)
T 2ce7_A 118 DAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEI 197 (476)
T ss_dssp GGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHH
T ss_pred hhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHH
Confidence 5420 1122221111 11235567777766554321 11 2334778888888888888877
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
++......+.. + ...++..+.|..
T Consensus 198 ~~~~~~l~~~v-~-l~~la~~t~G~s 221 (476)
T 2ce7_A 198 HTRNKPLAEDV-N-LEIIAKRTPGFV 221 (476)
T ss_dssp HHTTSCBCTTC-C-HHHHHHTCTTCC
T ss_pred HHHhCCCcchh-h-HHHHHHhcCCCc
Confidence 76532111111 1 345777788876
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.11 Score=53.07 Aligned_cols=143 Identities=19% Similarity=0.231 Sum_probs=72.8
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.+|+|||++|+++++..... | +.|+.+.-.+ ...+. ....+..+........++++++|+
T Consensus 214 PPGtGKT~lakAiA~~~~~~--~---~~v~~~~l~~--------------~~~Ge-~e~~ir~lF~~A~~~aP~IifiDE 273 (428)
T 4b4t_K 214 PPGTGKTMLVKAVANSTKAA--F---IRVNGSEFVH--------------KYLGE-GPRMVRDVFRLARENAPSIIFIDE 273 (428)
T ss_dssp CTTTTHHHHHHHHHHHHTCE--E---EEEEGGGTCC--------------SSCSH-HHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred CCCCCHHHHHHHHHHHhCCC--e---EEEecchhhc--------------cccch-hHHHHHHHHHHHHHcCCCeeechh
Confidence 37999999999999987644 3 4444443211 00111 112233444444455789999999
Q ss_pred CCCc-----------c-c----hhhccCCcC--CCCCCeEEEEEeCChhhh---hccC-CCcceEecCCC-CHHHHHHHH
Q 048755 81 IWGS-----------L-D----LEAIGIPVA--DDNGGCKVLLTARSQDVL---SCKM-DCQQNFVVDVL-NEKEAWSLF 137 (674)
Q Consensus 81 v~~~-----------~-~----~~~l~~~~~--~~~~gs~ilvTtr~~~~~---~~~~-~~~~~~~l~~L-~~~~~~~lf 137 (674)
++.. . . ...+...+. ....+-.||.||...+.. .... +....+.+..+ +.++-..+|
T Consensus 274 iD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il 353 (428)
T 4b4t_K 274 VDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIF 353 (428)
T ss_dssp THHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHH
T ss_pred hhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHH
Confidence 8421 0 0 111211111 123355666677654433 1111 23345677656 455556677
Q ss_pred HHHhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 138 KKMTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
..+.......++. + ...+++.+.|.-
T Consensus 354 ~~~~~~~~l~~~~-d-l~~lA~~t~G~s 379 (428)
T 4b4t_K 354 GTIASKMSLAPEA-D-LDSLIIRNDSLS 379 (428)
T ss_dssp HHHHHSSCBCTTC-C-HHHHHHHTTTCC
T ss_pred HHHhcCCCCCccc-C-HHHHHHHCCCCC
Confidence 6665321111111 1 457777887753
No 215
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.85 E-value=0.023 Score=56.06 Aligned_cols=76 Identities=18% Similarity=0.224 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+.+++..... -...+.++++....... . .+.++......... ....+...+......+++||++
T Consensus 56 ~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~~-~---~~l~g~~~~~~~~~-~~~~~~~~~~~~~~~vl~lDEi 128 (311)
T 4fcw_A 56 TGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKHA-V---SRLIGAPPGYVGYE-EGGQLTEAVRRRPYSVILFDAI 128 (311)
T ss_dssp SSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTTH-H---HHHHCCCTTSTTTT-TCCHHHHHHHHCSSEEEEEETG
T ss_pred CCcCHHHHHHHHHHHHcCC--CcceEEeeccccccccc-H---HHhcCCCCcccccc-ccchHHHHHHhCCCeEEEEeCh
Confidence 6999999999999987543 12355666654332211 1 11222221111100 0012333344345579999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
+..
T Consensus 129 ~~l 131 (311)
T 4fcw_A 129 EKA 131 (311)
T ss_dssp GGS
T ss_pred hhc
Confidence 765
No 216
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.78 E-value=0.012 Score=53.89 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||+||+++++..... ...++++++. ++...+....... . ...+.+.+.. .-+|||||+
T Consensus 63 ~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~----~----~~~~~~~~~~--~~~lilDei 124 (202)
T 2w58_A 63 FGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQDQ----T----MNEKLDYIKK--VPVLMLDDL 124 (202)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC---C----C----CHHHHHHHHH--SSEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhccc----h----HHHHHHHhcC--CCEEEEcCC
Confidence 6999999999999988754 3456666653 4444444322111 1 1122333332 239999999
Q ss_pred CCc--cchhh--ccC-CcCCC-CCCeEEEEEeCC
Q 048755 82 WGS--LDLEA--IGI-PVADD-NGGCKVLLTARS 109 (674)
Q Consensus 82 ~~~--~~~~~--l~~-~~~~~-~~gs~ilvTtr~ 109 (674)
+.. .+|.. +.. .+... ..+.++|+||..
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 643 33322 111 11111 234568888774
No 217
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.59 E-value=0.0033 Score=54.11 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+|||++|+.+++....
T Consensus 33 ~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 33 PGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TTSSHHHHHHHHHHSSTT
T ss_pred CCCCHHHHHHHHHHhCCc
Confidence 699999999999986543
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.37 E-value=0.079 Score=55.49 Aligned_cols=148 Identities=11% Similarity=0.151 Sum_probs=77.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... .+.++++. + ...+ .. ........+.+....+++.+|+||++
T Consensus 247 pGtGKT~lAraia~~~~~~-----fv~vn~~~------l----~~~~----~g-~~~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 247 PGTGKTLIARAVANETGAF-----FFLINGPE------I----MSKL----AG-ESESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp TTSSHHHHHHHHHHHCSSE-----EEEEEHHH------H----HTSC----TT-HHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred CCCCHHHHHHHHHHHhCCC-----EEEEEchH------h----hhhh----cc-hhHHHHHHHHHHHHhcCCcEEEecch
Confidence 6999999999998876322 34444321 1 1100 01 11122333444445567899999998
Q ss_pred CCc--------c-----chhhccCCcC--CCCCCeEEEEEeCChhhhh---cc-CCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGS--------L-----DLEAIGIPVA--DDNGGCKVLLTARSQDVLS---CK-MDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~--------~-----~~~~l~~~~~--~~~~gs~ilvTtr~~~~~~---~~-~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+.. . ....+...+. ....+.+||.||....... .. ......+.+...+.++-.+++..++.
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp HHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTT
T ss_pred hhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHh
Confidence 421 0 0111211111 1223455666666543321 11 12334688999999999999998875
Q ss_pred CCCCCCchhHHHHHHHHHhCCc-hhhHHHH
Q 048755 143 DCIENGELKSVATEVVKECAGL-PIAIVPV 171 (674)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~c~g~-Plal~~~ 171 (674)
....... ....+++..+.|. +-.+..+
T Consensus 387 ~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 387 NMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp TSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred cCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 3221111 1135566677664 4444443
No 219
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.33 E-value=0.034 Score=58.20 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHHhhhhccc---C-c-eEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNL---F-E-KVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~---F-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+|||++|+.++........ . + .++.++++..+ .+.. ......++..+...++.+|
T Consensus 210 pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~-----------------~g~~-e~~~~~~~~~~~~~~~~iL 271 (468)
T 3pxg_A 210 PGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY-----------------RGEF-EDRLKKVMDEIRQAGNIIL 271 (468)
T ss_dssp TTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHHHHTCCCCEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccc-----------------cchH-HHHHHHHHHHHHhcCCeEE
Confidence 699999999999998753210 1 1 13334443000 0000 0123344455555568899
Q ss_pred EEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhh---h---hccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 77 ILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDV---L---SCKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 77 VlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~---~---~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
++| ...+....+...+ ..+ .-++|.+|..... . ......-..+.++..+.++..+++...+.
T Consensus 272 fiD--~~~~a~~~L~~~L-~~g-~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 272 FID--AAIDASNILKPSL-ARG-ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp EEC--C--------CCCT-TSS-SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred EEe--CchhHHHHHHHhh-cCC-CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 999 2222222233222 212 3345544443321 0 00111224689999999999999987653
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.29 E-value=0.056 Score=53.06 Aligned_cols=19 Identities=5% Similarity=0.090 Sum_probs=16.6
Q ss_pred ceEecCCCCHHHHHHHHHH
Q 048755 121 QNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 121 ~~~~l~~L~~~~~~~lf~~ 139 (674)
..+.+++++.++..+++.+
T Consensus 195 ~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 195 IRVELTALSAADFERILTE 213 (310)
T ss_dssp EEEECCCCCHHHHHHHHHS
T ss_pred ceEEcCCcCHHHHHHHHHh
Confidence 5689999999999998874
No 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.24 E-value=0.014 Score=56.20 Aligned_cols=121 Identities=23% Similarity=0.212 Sum_probs=61.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+|||++|+++++..... |- .++.+.-.+. ..+..... ...+.+.....++.+|++||+
T Consensus 53 ~GtGKT~la~~la~~~~~~--~~---~v~~~~~~~~---------~~~~~~~~------~~~~~~~a~~~~~~vl~iDEi 112 (268)
T 2r62_A 53 PGTGKTLLAKAVAGEAHVP--FF---SMGGSSFIEM---------FVGLGASR------VRDLFETAKKQAPSIIFIDEI 112 (268)
T ss_dssp SCSSHHHHHHHHHHHHTCC--CC---CCCSCTTTTS---------CSSSCSSS------SSTTHHHHHHSCSCEEEESCG
T ss_pred CCCcHHHHHHHHHHHhCCC--EE---EechHHHHHh---------hcchHHHH------HHHHHHHHHhcCCeEEEEeCh
Confidence 6999999999999976543 31 1222111000 00111000 111222233345789999999
Q ss_pred CCcc-----------------chhhccCCcCCC---CCCeEEEEEeCChhhh----hccCCCcceEecCCCCHHHHHHHH
Q 048755 82 WGSL-----------------DLEAIGIPVADD---NGGCKVLLTARSQDVL----SCKMDCQQNFVVDVLNEKEAWSLF 137 (674)
Q Consensus 82 ~~~~-----------------~~~~l~~~~~~~---~~gs~ilvTtr~~~~~----~~~~~~~~~~~l~~L~~~~~~~lf 137 (674)
+... ....+...+... .....||.||...... .........+.++..+.++..+++
T Consensus 113 d~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il 192 (268)
T 2r62_A 113 DAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEIL 192 (268)
T ss_dssp GGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHH
T ss_pred hhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHH
Confidence 5421 122232222221 1224566666654322 111123456788888999888888
Q ss_pred HHHhC
Q 048755 138 KKMTG 142 (674)
Q Consensus 138 ~~~~~ 142 (674)
...+.
T Consensus 193 ~~~~~ 197 (268)
T 2r62_A 193 KVHIK 197 (268)
T ss_dssp HHHTS
T ss_pred HHHHh
Confidence 87664
No 222
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.22 E-value=0.036 Score=62.96 Aligned_cols=126 Identities=14% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCCcHHHHHHHHHHhhhhccc-----CceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHc-CCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNL-----FEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKK-ETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~-----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~kr~L 75 (674)
+|+|||++|+.+++....... -..+++++++.-.. +... ..........+.+.+.. +++.+
T Consensus 200 pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------------g~~~-~g~~~~~l~~~~~~~~~~~~~~i 266 (854)
T 1qvr_A 200 PGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------------GAKY-RGEFEERLKAVIQEVVQSQGEVI 266 (854)
T ss_dssp TTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------------------CHHHHHHHHHHHHHTTCSSEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------------cCcc-chHHHHHHHHHHHHHHhcCCCeE
Confidence 699999999999998754210 11345554432110 0000 01112233444555543 36899
Q ss_pred EEEeCCCCcc---c----hhh--ccCCcCCCCCCeEEEEEeCChhh-----hhccCCCcceEecCCCCHHHHHHHHHHHh
Q 048755 76 IILDDIWGSL---D----LEA--IGIPVADDNGGCKVLLTARSQDV-----LSCKMDCQQNFVVDVLNEKEAWSLFKKMT 141 (674)
Q Consensus 76 lVlDdv~~~~---~----~~~--l~~~~~~~~~gs~ilvTtr~~~~-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 141 (674)
|++|++.... . ++. +..++... .+-.+|.+|..... .......-..+.+++.+.++..+++....
T Consensus 267 L~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 267 LFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp EEECCC-------------------HHHHHT-TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred EEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 9999997542 0 111 11111111 22335555543321 11112223468999999999999887443
No 223
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.15 E-value=0.093 Score=50.72 Aligned_cols=78 Identities=8% Similarity=0.021 Sum_probs=51.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHH-HHHHHHH---HcCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRA-WRLLEQL---KKET 72 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~~~~l---~~~k 72 (674)
.|+||||||.+++.....+..=..++||+.-..++.. .+++++.+.+. ....+.+ ..+.+.+ ..++
T Consensus 37 pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~~ 111 (333)
T 3io5_A 37 SKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERGE 111 (333)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhccC
Confidence 6999999999998876643111358999988777653 37778776432 1222333 3344444 4567
Q ss_pred cEEEEEeCCCCc
Q 048755 73 KILIILDDIWGS 84 (674)
Q Consensus 73 r~LlVlDdv~~~ 84 (674)
.-++|+|.|...
T Consensus 112 ~~lvVIDSI~aL 123 (333)
T 3io5_A 112 KVVVFIDSLGNL 123 (333)
T ss_dssp CEEEEEECSTTC
T ss_pred ceEEEEeccccc
Confidence 889999999643
No 224
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.80 E-value=0.25 Score=48.98 Aligned_cols=53 Identities=17% Similarity=0.126 Sum_probs=38.8
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhCCchhhHHHHHH
Q 048755 120 QQNFVVDVLNEKEAWSLFKKMTGDCIENGELKSVATEVVKECAGLPIAIVPVAK 173 (674)
Q Consensus 120 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~~~ 173 (674)
...+.+++.+.++..+++.+.+.... .....+.+..|++.++|.|..+..+..
T Consensus 172 ~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 172 GIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred CceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 34688999999999999988764111 123356789999999999976655443
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.56 E-value=0.016 Score=64.95 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=62.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+++++..... -...+.++++...... ... ...+...+......+|+||++
T Consensus 530 ~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~-------------~~~------~~~l~~~~~~~~~~vl~lDEi 588 (758)
T 3pxi_A 530 TGVGKTELARALAESIFGD--EESMIRIDMSEYMEKH-------------STS------GGQLTEKVRRKPYSVVLLDAI 588 (758)
T ss_dssp TTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSC-------------CCC---------CHHHHHHCSSSEEEEECG
T ss_pred CCCCHHHHHHHHHHHhcCC--CcceEEEechhccccc-------------ccc------cchhhHHHHhCCCeEEEEeCc
Confidence 6999999999999987533 2335666665422100 000 011112222233458999999
Q ss_pred CCcc--chhhccCCcCC-----------CCCCeEEEEEeCChh-----h-------h--hccCCCcceEecCCCCHHHHH
Q 048755 82 WGSL--DLEAIGIPVAD-----------DNGGCKVLLTARSQD-----V-------L--SCKMDCQQNFVVDVLNEKEAW 134 (674)
Q Consensus 82 ~~~~--~~~~l~~~~~~-----------~~~gs~ilvTtr~~~-----~-------~--~~~~~~~~~~~l~~L~~~~~~ 134 (674)
+... ....+...+.. ...+.+||+||.... + . .-..+....+.+.+++.++..
T Consensus 589 ~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~ 668 (758)
T 3pxi_A 589 EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT 668 (758)
T ss_dssp GGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHH
T ss_pred cccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHH
Confidence 7652 12222111111 123567888887311 0 0 001233358899999999988
Q ss_pred HHHHHHh
Q 048755 135 SLFKKMT 141 (674)
Q Consensus 135 ~lf~~~~ 141 (674)
+++...+
T Consensus 669 ~i~~~~l 675 (758)
T 3pxi_A 669 EIVSLMS 675 (758)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876544
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.53 E-value=0.12 Score=57.31 Aligned_cols=142 Identities=11% Similarity=0.163 Sum_probs=76.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||+||+++++..... .+.|+.++- . ..... ........+.+......+.+|++|++
T Consensus 247 PGTGKT~LAraiA~elg~~-----~~~v~~~~l----------~----sk~~g-ese~~lr~lF~~A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 247 PGTGKTLIARAVANETGAF-----FFLINGPEI----------M----SKLAG-ESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp TTSCHHHHHHHHHTTTTCE-----EEEEEHHHH----------H----SSCTT-HHHHHHHHHHHHHTTSCSEEEEEESG
T ss_pred CCCCHHHHHHHHHHHhCCe-----EEEEEhHHh----------h----cccch-HHHHHHHHHHHHHHHcCCeEEEEehh
Confidence 6999999999999977643 344544321 0 00011 11222334444555567899999998
Q ss_pred CCcc--------c-----hhhccCCcCC--CCCCeEEEEEeCChhhhhccC----CCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGSL--------D-----LEAIGIPVAD--DNGGCKVLLTARSQDVLSCKM----DCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~~--------~-----~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+..- + ...+...+.. ...+-.||.||...+...... .....++++.-+.++-.+++..+..
T Consensus 307 Dal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp GGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCS
T ss_pred cccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhc
Confidence 6320 1 1111111111 112334555665444331111 2345788888899999999987764
Q ss_pred CCCCCCchhHHHHHHHHHhCCch
Q 048755 143 DCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
........ -...+++++.|.-
T Consensus 387 ~~~~~~dv--dl~~lA~~T~Gfs 407 (806)
T 3cf2_A 387 NMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp SSEECTTC--CHHHHHHHCCSCC
T ss_pred CCCCCccc--CHHHHHHhcCCCC
Confidence 22111111 1456788887754
No 227
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.52 E-value=0.031 Score=49.98 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
+|+|||++|+.+++....
T Consensus 52 ~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 52 PGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp GGGCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 699999999999998754
No 228
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.43 E-value=0.43 Score=45.09 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||||+.+++.... +.+.++.. ++. .. .. .. .......+.+........++++|++
T Consensus 58 ~G~GKTtl~~~i~~~~~~-----~~i~~~~~------~~~----~~-~~---~~-~~~~i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 58 PGVGKTHLARAVAGEARV-----PFITASGS------DFV----EM-FV---GV-GAARVRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp TTSSHHHHHHHHHHHTTC-----CEEEEEHH------HHH----HS-CT---TH-HHHHHHHHHHHHTTSSSEEEEEETH
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEeeHH------HHH----HH-Hh---hH-HHHHHHHHHHHHHhcCCeEEEehhh
Confidence 699999999999987652 23333321 111 10 00 00 0112233344443335689999998
Q ss_pred CCc------------cc----hhhccCCcCCC--CCCeEEEEEeCChhhhhcc----CCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGS------------LD----LEAIGIPVADD--NGGCKVLLTARSQDVLSCK----MDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~------------~~----~~~l~~~~~~~--~~gs~ilvTtr~~~~~~~~----~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+.. .. ...+...+..+ .....++.||...+..... ......+.++..+.++-.+++..
T Consensus 118 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 197 (254)
T 1ixz_A 118 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRI 197 (254)
T ss_dssp HHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred hhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHH
Confidence 421 01 11222122221 2233455566666554211 12345778888899888888887
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
.+......+.. ....+++.+.|.-
T Consensus 198 ~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 198 HARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp HHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHcCCCCCccc--CHHHHHHHcCCCC
Confidence 66422111111 1345666776653
No 229
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.32 E-value=0.4 Score=45.91 Aligned_cols=121 Identities=14% Similarity=0.203 Sum_probs=66.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||||+.++..... ..+.++...-.+. .... .......+.+......+.++++|++
T Consensus 53 ~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~--------------~~~~-~~~~i~~vf~~a~~~~p~i~~~Dei 112 (274)
T 2x8a_A 53 PGCGKTLLAKAVANESGL-----NFISVKGPELLNM--------------YVGE-SERAVRQVFQRAKNSAPCVIFFDEV 112 (274)
T ss_dssp TTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS--------------TTHH-HHHHHHHHHHHHHHTCSEEEEEETC
T ss_pred CCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh--------------hhhH-HHHHHHHHHHHHHhcCCCeEeeehh
Confidence 699999999999987653 2455544321110 0000 0112223333333346789999998
Q ss_pred CCccc-------------hhhccCCcCC--CCCCeEEEEEeCChhhhhcc----CCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGSLD-------------LEAIGIPVAD--DNGGCKVLLTARSQDVLSCK----MDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~~~-------------~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+.... ...+...+.. ......++.+|...++.... -.-...+.++.-+.++-.+++.....
T Consensus 113 d~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 113 DALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred hhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 64210 0111111111 12344566677776654211 13456778888899999999987764
No 230
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.25 E-value=0.065 Score=44.77 Aligned_cols=54 Identities=9% Similarity=0.191 Sum_probs=30.1
Q ss_pred eEeecccccc--CCCCCcCCCCCcEEEcccCCCcccCchhhcCCCcceEEEecCccc
Q 048755 312 AISLFNTNIS--ELPQGFECPQLKYFHIRNDPSLRISDNIFTGMTELRVLDFTEMHL 366 (674)
Q Consensus 312 ~l~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~Lr~L~l~~~~~ 366 (674)
.++.+++.+. .+|..+. .+|+.|++++|.+..++...|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555555 5554331 3456666666666666665555566666666655543
No 231
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.25 E-value=0.078 Score=56.58 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+||||+|+.++.....
T Consensus 117 ~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 117 PGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp SSSSHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHhcCC
Confidence 699999999999998753
No 232
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.24 E-value=0.18 Score=47.32 Aligned_cols=81 Identities=16% Similarity=0.102 Sum_probs=46.1
Q ss_pred CCCcHHHHHHHHHHhhhhcc----cCceEEEEEecCCcCHHHHHHHHHHHhCCCCc---------ccchHH----HHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENN----LFEKVISSRVSQTPQIKEIQREIAEKLGLKID---------EESETV----RAWRL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~----~~~~~ 64 (674)
+|+||||||+.++....... .-..++|++....++...+ .++++.++.... ...... ....+
T Consensus 33 ~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (243)
T 1n0w_A 33 FRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQA 111 (243)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHHHH
Confidence 69999999999998543211 1246899988775555444 334555554321 011111 12223
Q ss_pred HHHHHcCCcEEEEEeCCCC
Q 048755 65 LEQLKKETKILIILDDIWG 83 (674)
Q Consensus 65 ~~~l~~~kr~LlVlDdv~~ 83 (674)
.+.+...+.-++|+|++..
T Consensus 112 ~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 112 SAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHSCEEEEEEETSSG
T ss_pred HHHHhcCCceEEEEeCchH
Confidence 3334344677899998753
No 233
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.21 E-value=0.13 Score=53.72 Aligned_cols=96 Identities=6% Similarity=-0.054 Sum_probs=54.5
Q ss_pred EEEEeCCCCc--cchhhccCCcCCCCCCeEEEEEe---------CC----h-hhhhccCCCcceEecCCCCHHHHHHHHH
Q 048755 75 LIILDDIWGS--LDLEAIGIPVADDNGGCKVLLTA---------RS----Q-DVLSCKMDCQQNFVVDVLNEKEAWSLFK 138 (674)
Q Consensus 75 LlVlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt---------r~----~-~~~~~~~~~~~~~~l~~L~~~~~~~lf~ 138 (674)
++++|+++.. +..+.+...+...... .+|+.| .+ . .+..........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999865 3355554333333333 344344 21 1 0000011223457999999999999998
Q ss_pred HHhCCCCCCCchhHHHHHHHHHh-CCchhhHHHHH
Q 048755 139 KMTGDCIENGELKSVATEVVKEC-AGLPIAIVPVA 172 (674)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~i~~~c-~g~Plal~~~~ 172 (674)
.++... ...-..+....++..+ +|.|..+..+.
T Consensus 377 ~~~~~~-~~~~~~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTE-GINISEEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHH-TCCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHh-CCCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence 776310 0112345677788888 78887554443
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.18 E-value=0.27 Score=47.29 Aligned_cols=142 Identities=16% Similarity=0.232 Sum_probs=72.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||||+.++..... ..+.++.. ++.. .. . . ........+.+......+.++|+|++
T Consensus 82 ~GtGKTtl~~~i~~~~~~-----~~i~~~~~------~~~~----~~-~---~-~~~~~i~~~~~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 82 PGVGKTHLARAVAGEARV-----PFITASGS------DFVE----MF-V---G-VGAARVRDLFETAKRHAPCIVFIDEI 141 (278)
T ss_dssp TTSSHHHHHHHHHHHTTC-----CEEEEEHH------HHHH----ST-T---T-HHHHHHHHHHHHHHTSCSEEEEEETH
T ss_pred CcChHHHHHHHHHHHcCC-----CEEEecHH------HHHH----HH-h---h-HHHHHHHHHHHHHHhcCCcEEehhhh
Confidence 699999999999987652 23444322 1111 00 0 0 00112233444443345789999998
Q ss_pred CCc------------cc----hhhccCCcCCC--CCCeEEEEEeCChhhhh----ccCCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGS------------LD----LEAIGIPVADD--NGGCKVLLTARSQDVLS----CKMDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~------------~~----~~~l~~~~~~~--~~gs~ilvTtr~~~~~~----~~~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+.. .. ...+...+..+ .....++.||...+... ........+.++..+.++-.+++..
T Consensus 142 d~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 221 (278)
T 1iy2_A 142 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRI 221 (278)
T ss_dssp HHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHH
Confidence 421 01 11222122222 22334555666655431 1113445788998999988888887
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
.+......++. ....++..+.|..
T Consensus 222 ~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 222 HARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp HHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred HHccCCCCccc--CHHHHHHHcCCCC
Confidence 66422111111 1345667776654
No 235
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.06 E-value=0.015 Score=50.07 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=21.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
.|+|||||++.+++..... .+ .+++++..+
T Consensus 45 ~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~ 74 (149)
T 2kjq_A 45 EGAGKSHLLQAWVAQALEA-GK-NAAYIDAAS 74 (149)
T ss_dssp STTTTCHHHHHHHHHHHTT-TC-CEEEEETTT
T ss_pred CCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHH
Confidence 6999999999999987643 11 266666544
No 236
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.00 E-value=0.2 Score=46.10 Aligned_cols=35 Identities=23% Similarity=0.097 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQ 41 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~ 41 (674)
+|+||||+|..++. .. -..++|++....++...+.
T Consensus 29 ~GsGKTtl~~~l~~-~~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 29 YASGKTTLALQTGL-LS----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSSHHHHHHHHHH-HH----CSEEEEEESSCCCCHHHHH
T ss_pred CCCCHHHHHHHHHH-Hc----CCcEEEEECCCCCCHHHHH
Confidence 69999999999998 21 2468888877655655544
No 237
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.97 E-value=0.11 Score=48.50 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 43 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (674)
.|+|||||++.++....... ..++|++... ...++.+.
T Consensus 32 ~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHH
Confidence 69999999999997665431 2467766543 34444443
No 238
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.79 E-value=0.043 Score=49.09 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=57.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC---cCHHHHHHHHH---HHhC--CCCcccc---hHHH----HHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT---PQIKEIQREIA---EKLG--LKIDEES---ETVR----AWRLLE 66 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~---~~l~--~~~~~~~---~~~~----~~~~~~ 66 (674)
.|.||||.|-.++-+...+. ..|..+.+.+. ....++++.+. ...+ ..-..+. +... .....+
T Consensus 37 ~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a~~ 114 (196)
T 1g5t_A 37 NGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKR 114 (196)
T ss_dssp SSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHHHH
Confidence 48999999999999888663 25666666542 23344444431 0000 0000111 1111 122333
Q ss_pred HHHcCCcEEEEEeCCCC-----ccchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 67 QLKKETKILIILDDIWG-----SLDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 67 ~l~~~kr~LlVlDdv~~-----~~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
.+..++-=|||||++-. .-+.+.+...+.....+.-||+|+|+...
T Consensus 115 ~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 115 MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 33344445999999843 22333333334445556789999998643
No 239
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=93.74 E-value=0.12 Score=57.90 Aligned_cols=119 Identities=16% Similarity=0.243 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHHHhhhhcc-c---Cce-EEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENN-L---FEK-VISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-~---F~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+|||++|+.+++...... . ... ++.++. +....+.. ......+.......++.+|
T Consensus 210 pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----------------g~~~~G~~-e~~l~~~~~~~~~~~~~iL 271 (758)
T 3pxi_A 210 PGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----------------GTKYRGEF-EDRLKKVMDEIRQAGNIIL 271 (758)
T ss_dssp TTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------------------------CTTHHHHHHHHHTCCCCEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------------cccccchH-HHHHHHHHHHHHhcCCEEE
Confidence 69999999999999864321 0 111 222332 01101100 1123344444554578899
Q ss_pred EEeCCCCccchhhccCCcCCCCCCeEEEEEeCChhh----h--hccCCCcceEecCCCCHHHHHHHHHHHhC
Q 048755 77 ILDDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDV----L--SCKMDCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 77 VlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~----~--~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
++|. .......+...+ . ...-++|.||..... . ......-..+.++..+.++..+++.....
T Consensus 272 fiD~--~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 272 FIDA--AIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp EECC----------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred EEcC--chhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 9992 121222232222 2 223445555544331 0 00011225689999999999999986653
No 240
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.62 E-value=0.26 Score=49.08 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHHHhhhhcc----cCceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKENN----LFEKVISSRVSQTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (674)
+|+||||+|.+++....... .-..++|++....++.+.+. ++++.++.+
T Consensus 131 ~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~ 183 (343)
T 1v5w_A 131 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVD 183 (343)
T ss_dssp TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 69999999999998743311 12468999998877766654 445555543
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.59 E-value=0.19 Score=49.68 Aligned_cols=80 Identities=26% Similarity=0.265 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHHhhhhccc----CceEEEEEecCCcCHHHHHHHHHHHhCCCCcc---------cchHH----HHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNL----FEKVISSRVSQTPQIKEIQREIAEKLGLKIDE---------ESETV----RAWRL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~----F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---------~~~~~----~~~~~ 64 (674)
+|+||||+|.+++........ -..++|++....++.+.+. ++++.++..... ..... ....+
T Consensus 116 ~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l 194 (324)
T 2z43_A 116 FGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDL 194 (324)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHH
Confidence 699999999999887542211 1368999988877766655 445666554210 11111 12233
Q ss_pred HHHHHc-CCcEEEEEeCCC
Q 048755 65 LEQLKK-ETKILIILDDIW 82 (674)
Q Consensus 65 ~~~l~~-~kr~LlVlDdv~ 82 (674)
...+.. .+.-+||+|.+.
T Consensus 195 ~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 195 QELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHCTTEEEEEETTTT
T ss_pred HHHHHhccCCCEEEEeCcH
Confidence 333333 456788888874
No 242
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.57 E-value=0.08 Score=51.39 Aligned_cols=61 Identities=20% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEe--cCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRV--SQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIIL 78 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVl 78 (674)
.+|+|||+||.+++.. .. ..+.|+++ .+..+ .- ..........+.+.+.+ .+ +||+
T Consensus 131 pPGsGKTtLAlqlA~~-~G----~~VlyIs~~~eE~v~-------------~~--~~~le~~l~~i~~~l~~-~~-LLVI 188 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEA-LG----GKDKYATVRFGEPLS-------------GY--NTDFNVFVDDIARAMLQ-HR-VIVI 188 (331)
T ss_dssp SCSSSHHHHHHHHHHH-HH----TTSCCEEEEBSCSST-------------TC--BCCHHHHHHHHHHHHHH-CS-EEEE
T ss_pred CCCCCHHHHHHHHHHh-CC----CCEEEEEecchhhhh-------------hh--hcCHHHHHHHHHHHHhh-CC-EEEE
Confidence 4799999999999987 21 13456666 22211 00 01122233345555554 34 9999
Q ss_pred eCCCC
Q 048755 79 DDIWG 83 (674)
Q Consensus 79 Ddv~~ 83 (674)
|++..
T Consensus 189 DsI~a 193 (331)
T 2vhj_A 189 DSLKN 193 (331)
T ss_dssp ECCTT
T ss_pred ecccc
Confidence 99864
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.40 E-value=0.24 Score=48.82 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCCcHHHHHHHHHHhhhhcc---------cC-----ceEEEEEecCCcCHHHHHHHHHHHhCCC
Q 048755 2 GGIGKTTLVKEVGRQAKENN---------LF-----EKVISSRVSQTPQIKEIQREIAEKLGLK 51 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 51 (674)
+|+|||++|.+++....... .. ..++|++....++.+.+.+ +++.++.+
T Consensus 107 ~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 107 FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 69999999999987642110 11 4689999888777766654 45566554
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.33 E-value=0.41 Score=53.54 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=64.9
Q ss_pred CCCcHHHHHHHHHHhhhhcc----cCceEEE-EEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENN----LFEKVIS-SRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~----~F~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+|||++|+.+++...... .....++ ++++.- +........-......+.+.+...++.+|
T Consensus 216 ~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l-------------~~~~~~~g~~e~~l~~~~~~~~~~~~~iL 282 (758)
T 1r6b_X 216 SGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL-------------LAGTKYRGDFEKRFKALLKQLEQDTNSIL 282 (758)
T ss_dssp TTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------------CCCCCSSCHHHHHHHHHHHHSSSSCEEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-------------hccccccchHHHHHHHHHHHHHhcCCeEE
Confidence 69999999999998874321 1222222 222211 00011111122234455555555567999
Q ss_pred EEeCCCCc----------cchhhccCCcCCCCCCeEEEEEeCChhhhh------ccCCCcceEecCCCCHHHHHHHHHHH
Q 048755 77 ILDDIWGS----------LDLEAIGIPVADDNGGCKVLLTARSQDVLS------CKMDCQQNFVVDVLNEKEAWSLFKKM 140 (674)
Q Consensus 77 VlDdv~~~----------~~~~~l~~~~~~~~~gs~ilvTtr~~~~~~------~~~~~~~~~~l~~L~~~~~~~lf~~~ 140 (674)
++||++.. .+...+..++... .+-++|.+|...+... .....-..+.++..+.++..+++...
T Consensus 283 ~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 283 FIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_dssp EETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHH
T ss_pred EEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence 99999754 1111222222222 2345555555433210 01112236889999999998888754
Q ss_pred h
Q 048755 141 T 141 (674)
Q Consensus 141 ~ 141 (674)
.
T Consensus 362 ~ 362 (758)
T 1r6b_X 362 K 362 (758)
T ss_dssp H
T ss_pred H
Confidence 4
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=93.18 E-value=0.4 Score=50.10 Aligned_cols=142 Identities=16% Similarity=0.216 Sum_probs=70.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||||+++++.... ..+.++.+.-.. ..... .......+.+......+.++++|++
T Consensus 73 pGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~--------------~~~g~-~~~~v~~lfq~a~~~~p~il~IDEI 132 (499)
T 2dhr_A 73 PGVGKTHLARAVAGEARV-----PFITASGSDFVE--------------MFVGV-GAARVRDLFETAKRHAPCIVFIDEI 132 (499)
T ss_dssp SSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS--------------SCTTH-HHHHHHHHTTTSSSSSSCEEEEECG
T ss_pred CCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH--------------hhhhh-HHHHHHHHHHHHHhcCCCEEEEehH
Confidence 699999999999987652 234454432110 00000 0001111111111123589999999
Q ss_pred CCcc------------c----hhhccCCcCCC--CCCeEEEEEeCChhhhhc-cC---CCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL------------D----LEAIGIPVADD--NGGCKVLLTARSQDVLSC-KM---DCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~------------~----~~~l~~~~~~~--~~gs~ilvTtr~~~~~~~-~~---~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+... . ...+...+..+ ..+..++.||...+.... .. .....+.++..+.++-.+++..
T Consensus 133 d~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 133 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp GGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred HHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHH
Confidence 5320 0 11222222211 234456666666654321 11 2345788998899988888887
Q ss_pred HhCCCCCCCchhHHHHHHHHHhCCch
Q 048755 140 MTGDCIENGELKSVATEVVKECAGLP 165 (674)
Q Consensus 140 ~~~~~~~~~~~~~~~~~i~~~c~g~P 165 (674)
++......+.. ....++..+.|..
T Consensus 213 ~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 213 HARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp TTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred HHhcCCCChHH--HHHHHHHhcCCCC
Confidence 66422111111 1345666676654
No 246
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.94 E-value=0.0096 Score=51.00 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||++|+.+++...
T Consensus 36 ~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 36 AGSPFETVARYFHKNGT 52 (143)
T ss_dssp TTCCHHHHHGGGCCTTS
T ss_pred CCccHHHHHHHHHHhCC
Confidence 69999999999987644
No 247
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.86 E-value=0.14 Score=42.72 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=31.8
Q ss_pred EEecCCCCch--hchHhhcCCCCCcEEeCCCCCCCCCCChhhhhCCCCCCeEEeccCCC
Q 048755 403 ILTLRGSDME--KLVEEMGELTQLRLLDLSYCFNLQVIPPNVISSLSRLEELYIGQSPI 459 (674)
Q Consensus 403 ~L~l~~~~~~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 459 (674)
.++-++++++ .+|..+ ..+|++|+|++| .++.++.+.+..+++|++|++.+|+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4445555555 555421 135666676666 45566665566677777777776654
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.77 E-value=0.1 Score=58.44 Aligned_cols=73 Identities=15% Similarity=0.216 Sum_probs=37.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+.+++... ...+-++++...... .+.+.++......+ ......+...+......+|+||++
T Consensus 497 ~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~----~~~~l~g~~~g~~g-~~~~~~l~~~~~~~~~~vl~lDEi 566 (758)
T 1r6b_X 497 TGVGKTEVTVQLSKALG-----IELLRFDMSEYMERH----TVSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEI 566 (758)
T ss_dssp TTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSS----CCSSSCCCCSCSHH-HHHTTHHHHHHHHCSSEEEEEETG
T ss_pred CCCcHHHHHHHHHHHhc-----CCEEEEechhhcchh----hHhhhcCCCCCCcC-ccccchHHHHHHhCCCcEEEEeCc
Confidence 69999999999999773 234556655432110 00011111111100 011112233444445789999999
Q ss_pred CCc
Q 048755 82 WGS 84 (674)
Q Consensus 82 ~~~ 84 (674)
+..
T Consensus 567 ~~~ 569 (758)
T 1r6b_X 567 EKA 569 (758)
T ss_dssp GGS
T ss_pred ccc
Confidence 865
No 249
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.71 E-value=0.38 Score=47.76 Aligned_cols=76 Identities=18% Similarity=0.221 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l-~~~kr~L 75 (674)
+|+||||||.+++....... ..++|++....++.. .++.++...+. .............+ ...+.-+
T Consensus 70 pGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 70 ESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 69999999999998876432 347888887766654 55666654321 12222222333333 2345668
Q ss_pred EEEeCCCCc
Q 048755 76 IILDDIWGS 84 (674)
Q Consensus 76 lVlDdv~~~ 84 (674)
+|+|.+...
T Consensus 143 vVIDSi~~l 151 (356)
T 3hr8_A 143 IVVDSVAAL 151 (356)
T ss_dssp EEEECTTTC
T ss_pred EEehHhhhh
Confidence 999998543
No 250
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.62 E-value=0.36 Score=48.96 Aligned_cols=80 Identities=16% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHHHhhhhcc----cCceEEEEEecCCcCHHHHHHHHHHHhCCCCc---------ccch----HHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENN----LFEKVISSRVSQTPQIKEIQREIAEKLGLKID---------EESE----TVRAWRL 64 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~----~~~~~~~ 64 (674)
.|+|||||+..++-...... .-..++|++....++...+ +++++.++.... .... ......+
T Consensus 187 sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~~ 265 (400)
T 3lda_A 187 FRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAA 265 (400)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHHH
Confidence 69999999998764332210 1246899988776665544 446666665421 0111 1122233
Q ss_pred HHHHHcCCcEEEEEeCCC
Q 048755 65 LEQLKKETKILIILDDIW 82 (674)
Q Consensus 65 ~~~l~~~kr~LlVlDdv~ 82 (674)
...+...+.-+||+|.+.
T Consensus 266 ~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 266 AQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHSCEEEEEEETGG
T ss_pred HHHHHhcCCceEEecchh
Confidence 333444467788999864
No 251
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.44 E-value=0.086 Score=51.27 Aligned_cols=19 Identities=32% Similarity=0.233 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+|||+||+++++.....
T Consensus 45 pGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 45 KGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp TTSCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHhCCC
Confidence 7999999999999988533
No 252
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.26 E-value=0.21 Score=44.82 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=53.6
Q ss_pred CCcceEEEecCc-ccC-----CCCcccccccCCcEEEcCCcCCCCc------ccccCcCCccEEecCCCCch-----hch
Q 048755 353 MTELRVLDFTEM-HLL-----ALPSSLGLLQNLQTLSLDFCILGDI------AIIGDLKKLEILTLRGSDME-----KLV 415 (674)
Q Consensus 353 ~~~Lr~L~l~~~-~~~-----~lp~~~~~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~l~~~~~~-----~lp 415 (674)
-+.|+.|+|+++ .+. .+...+..=..|+.|+|++|.+.+. ..+..-+.|++|+|++|.|. .+-
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 332 1223333344566666666655441 22223456777777776655 233
Q ss_pred HhhcCCCCCcEEeCCCCCC--CCCCC----hhhhhCCCCCCeEEeccCC
Q 048755 416 EEMGELTQLRLLDLSYCFN--LQVIP----PNVISSLSRLEELYIGQSP 458 (674)
Q Consensus 416 ~~~~~l~~L~~L~l~~~~~--~~~~~----~~~l~~l~~L~~L~l~~~~ 458 (674)
+.+..-+.|++|+++++.. ++... .+.+..-+.|++|++..+.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4455556677777775422 12110 0124455677777776553
No 253
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.26 E-value=0.42 Score=47.83 Aligned_cols=75 Identities=21% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHHH-cCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQLK-KETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~-~~kr~L 75 (674)
+|+||||||.+++...... =..++|++....++.. .++.++.+.+. ....+....+.+.+. .++.-+
T Consensus 83 pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred CCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 6999999999998877644 2368999988766644 25556554221 122233334444443 334569
Q ss_pred EEEeCCCC
Q 048755 76 IILDDIWG 83 (674)
Q Consensus 76 lVlDdv~~ 83 (674)
||+|.+..
T Consensus 156 VVIDsl~~ 163 (366)
T 1xp8_A 156 VVVDSVAA 163 (366)
T ss_dssp EEEECTTT
T ss_pred EEEeChHH
Confidence 99999853
No 254
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.25 E-value=0.096 Score=50.10 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 34 (674)
.|+|||++|+.+++...... ...+.++++..
T Consensus 38 ~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~~ 68 (265)
T 2bjv_A 38 RGTGKELIASRLHYLSSRWQ--GPFISLNCAAL 68 (265)
T ss_dssp TTSCHHHHHHHHHHTSTTTT--SCEEEEEGGGS
T ss_pred CCCcHHHHHHHHHHhcCccC--CCeEEEecCCC
Confidence 69999999999998765331 12455666543
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.22 E-value=0.42 Score=47.63 Aligned_cols=74 Identities=23% Similarity=0.233 Sum_probs=46.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHHH-cCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQLK-KETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~-~~kr~L 75 (674)
+|+||||||.+++...... =..++|++....++.. .++.++.+.+. .........+.+.+. ..+.-+
T Consensus 72 pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 72 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 7999999999999877644 2368999987776643 24556554321 112233333444442 344568
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
||+|.+.
T Consensus 145 VVIDsl~ 151 (356)
T 1u94_A 145 IVVDSVA 151 (356)
T ss_dssp EEEECGG
T ss_pred EEEcCHH
Confidence 9999874
No 256
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.09 E-value=1.1 Score=44.56 Aligned_cols=100 Identities=4% Similarity=-0.111 Sum_probs=64.8
Q ss_pred CCcEEEEEeCCCC-c--cchhhccCCcCCCCCCeEEEEEeCC-------hhhhhccCCCcceEecCCCCHHHHHHHHHHH
Q 048755 71 ETKILIILDDIWG-S--LDLEAIGIPVADDNGGCKVLLTARS-------QDVLSCKMDCQQNFVVDVLNEKEAWSLFKKM 140 (674)
Q Consensus 71 ~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~gs~ilvTtr~-------~~~~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 140 (674)
+++-++|+|+++. . ..++++...+.....++.+|+++.. ..+..........++..+++.++..+.+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 4577889999866 3 4456665444444557777776643 1232222345578999999999999888776
Q ss_pred hCCCCCCCchhHHHHHHHHHhCCchhhHHHH
Q 048755 141 TGDCIENGELKSVATEVVKECAGLPIAIVPV 171 (674)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~~c~g~Plal~~~ 171 (674)
+.... ..-..+.+..+++.++|...++...
T Consensus 155 ~~~~g-~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQLN-LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHTT-CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHcC-CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 63111 1223467888889999988776554
No 257
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.99 E-value=0.7 Score=46.65 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||++|+.+++...
T Consensus 81 ~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 81 TGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998774
No 258
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=91.79 E-value=0.23 Score=48.48 Aligned_cols=29 Identities=10% Similarity=0.258 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHHHhhhhc-ccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-~~F~~~~wv~~~~ 33 (674)
.|+|||++|+.+++..... .. .+.++++.
T Consensus 34 ~GtGKt~lAr~i~~~~~~~~~~---~v~v~~~~ 63 (304)
T 1ojl_A 34 SGTGKELVARALHACSARSDRP---LVTLNCAA 63 (304)
T ss_dssp TTSCHHHHHHHHHHHSSCSSSC---CCEEECSS
T ss_pred CCchHHHHHHHHHHhCcccCCC---eEEEeCCC
Confidence 6999999999999865432 22 34455554
No 259
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.73 E-value=0.38 Score=49.40 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCC---------CCcccchHH----HHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGL---------KIDEESETV----RAWRLLEQ 67 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~---------~~~~~~~~~----~~~~~~~~ 67 (674)
.|+||||||..++.....+.. +..+++.+.+.. ...++.+++.+.=.. ..+...... ....+.++
T Consensus 160 sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAEy 238 (473)
T 1sky_E 160 AGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAEY 238 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999988775522 334556665543 455555555432000 000000111 11234444
Q ss_pred HH--cCCcEEEEEeCCC
Q 048755 68 LK--KETKILIILDDIW 82 (674)
Q Consensus 68 l~--~~kr~LlVlDdv~ 82 (674)
.. .++++|+++||+.
T Consensus 239 Frd~~G~~VLl~~D~it 255 (473)
T 1sky_E 239 FRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHSCCEEEEEEECTH
T ss_pred HHHhcCCcEEEEeccHH
Confidence 44 4899999999984
No 260
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.66 E-value=0.53 Score=46.82 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHHH-cCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQLK-KETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~-~~kr~L 75 (674)
+|+||||||.+++...... =..++|++....++.. .++.++...+. .........+...+. ..+.-+
T Consensus 70 pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 70 ESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 6999999999998776643 2358899887766643 35566654321 112233333444443 334669
Q ss_pred EEEeCCCC
Q 048755 76 IILDDIWG 83 (674)
Q Consensus 76 lVlDdv~~ 83 (674)
||+|.+..
T Consensus 143 IVIDsl~~ 150 (349)
T 2zr9_A 143 IVIDSVAA 150 (349)
T ss_dssp EEEECGGG
T ss_pred EEEcChHh
Confidence 99998853
No 261
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.41 E-value=0.24 Score=44.49 Aligned_cols=103 Identities=11% Similarity=0.090 Sum_probs=48.9
Q ss_pred CCCcEEEcccC-CCccc----CchhhcCCCcceEEEecCcccC-----CCCcccccccCCcEEEcCCcCCCC--c----c
Q 048755 330 PQLKYFHIRND-PSLRI----SDNIFTGMTELRVLDFTEMHLL-----ALPSSLGLLQNLQTLSLDFCILGD--I----A 393 (674)
Q Consensus 330 ~~L~~L~l~~~-~~~~~----~~~~~~~~~~Lr~L~l~~~~~~-----~lp~~~~~l~~L~~L~l~~~~~~~--~----~ 393 (674)
+.|+.|+++++ .+.+. ....+..-..|+.|+|++|.+. .+...+..=+.|++|+|+.|.++. . .
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 45566666553 33221 1122344556666666666554 123333334456666666665544 1 2
Q ss_pred cccCcCCccEEecCCC---Cch-----hchHhhcCCCCCcEEeCCCC
Q 048755 394 IIGDLKKLEILTLRGS---DME-----KLVEEMGELTQLRLLDLSYC 432 (674)
Q Consensus 394 ~~~~l~~L~~L~l~~~---~~~-----~lp~~~~~l~~L~~L~l~~~ 432 (674)
.+..-..|++|+++++ .+. .+-..+..-+.|+.|+++.+
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 2333345666666543 122 12233444455666665543
No 262
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.00 E-value=0.17 Score=49.50 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHhhh-hcccCceEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAK-ENNLFEKVISSRV 31 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~-~~~~F~~~~wv~~ 31 (674)
.|+|||+||+++++... .+. ..++++++
T Consensus 161 ~GtGKT~La~aia~~~~~~~g--~~v~~~~~ 189 (308)
T 2qgz_A 161 MGIGKSYLLAAMAHELSEKKG--VSTTLLHF 189 (308)
T ss_dssp TTSSHHHHHHHHHHHHHHHSC--CCEEEEEH
T ss_pred CCCCHHHHHHHHHHHHHHhcC--CcEEEEEH
Confidence 69999999999999877 442 23555555
No 263
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.87 E-value=0.25 Score=56.07 Aligned_cols=30 Identities=27% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
.|+|||++|+.+++...... ...+.++++.
T Consensus 597 ~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~ 626 (854)
T 1qvr_A 597 TGVGKTELAKTLAATLFDTE--EAMIRIDMTE 626 (854)
T ss_dssp SSSSHHHHHHHHHHHHHSSG--GGEEEECTTT
T ss_pred CCCCHHHHHHHHHHHhcCCC--CcEEEEechh
Confidence 69999999999999875421 1245555554
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.62 E-value=0.77 Score=40.15 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHH
Q 048755 1 MGGIGKTTLVKEV 13 (674)
Q Consensus 1 mgGiGKTtla~~~ 13 (674)
+.|+||||+|+.+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5799999999999
No 265
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.48 E-value=0.74 Score=47.40 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCC-------Cc-------ccch------HHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK-------ID-------EESE------TVR 60 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~-------~~~~------~~~ 60 (674)
+|+|||+|+..++++.... +-+.++++-+.+.. .+.++.+++.+.=... .. +++. ...
T Consensus 174 ~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~~ 252 (498)
T 1fx0_B 174 AGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLT 252 (498)
T ss_dssp SSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHHH
T ss_pred CCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHHH
Confidence 6999999999999986543 23567777776544 6777788877642221 10 1111 112
Q ss_pred HHHHHHHHHc--CCcEEEEEeCCC
Q 048755 61 AWRLLEQLKK--ETKILIILDDIW 82 (674)
Q Consensus 61 ~~~~~~~l~~--~kr~LlVlDdv~ 82 (674)
...+.+++.. |+.+|+++||+.
T Consensus 253 altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 253 ALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp HHHTHHHHTTTSCCEEEEEEECSH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHH
Confidence 3345555654 799999999984
No 266
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.64 E-value=3.9 Score=51.64 Aligned_cols=71 Identities=17% Similarity=0.269 Sum_probs=42.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+|||++|+.+..... .+ ..+.++++...+...+++.+-..+.......+... ..-..+|++++.+||+
T Consensus 1276 pGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~------~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A 1276 PGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL------LPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp TTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE------EEBSSSSCEEEEEETT
T ss_pred CCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc------cCCCCCceEEEEeccc
Confidence 69999999977766432 12 45678888777777777766665532210000000 0001368899999996
Q ss_pred C
Q 048755 82 W 82 (674)
Q Consensus 82 ~ 82 (674)
.
T Consensus 1346 n 1346 (2695)
T 4akg_A 1346 N 1346 (2695)
T ss_dssp T
T ss_pred c
Confidence 4
No 267
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=89.55 E-value=1.4 Score=45.18 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=50.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCC------Cc-------ccchH------HHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLK------ID-------EESET------VRA 61 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~-------~~~~~------~~~ 61 (674)
+|+|||+|+..+++..... +-+.++++-+.+.. .+.++.+++.+.=... .. +++.. ...
T Consensus 162 ~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~a 240 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTG 240 (482)
T ss_dssp TTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHHH
Confidence 6999999999999886432 23456677776543 5677778877652221 10 11111 122
Q ss_pred HHHHHHHH--cCCcEEEEEeCCC
Q 048755 62 WRLLEQLK--KETKILIILDDIW 82 (674)
Q Consensus 62 ~~~~~~l~--~~kr~LlVlDdv~ 82 (674)
..+.+++. .|+.+|+++||+.
T Consensus 241 ~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 241 LTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHhcCCcEEEEeccHH
Confidence 34455554 3799999999984
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.54 E-value=1.4 Score=40.65 Aligned_cols=47 Identities=30% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHHHhhhhc---c-cCceEEEEEecCCcCHHHHHHHHHHHhC
Q 048755 2 GGIGKTTLVKEVGRQAKEN---N-LFEKVISSRVSQTPQIKEIQREIAEKLG 49 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~---~-~F~~~~wv~~~~~~~~~~~~~~i~~~l~ 49 (674)
.|+|||||++.++...... . .-..++|++......... ...+++..+
T Consensus 34 nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 34 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 6999999999998754321 1 124588887755444332 333444443
No 269
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.51 E-value=0.29 Score=48.65 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHHhhhhc-ccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCcccchHH------HHHHHHHHHH-cCC
Q 048755 2 GGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDEESETV------RAWRLLEQLK-KET 72 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~~~~l~-~~k 72 (674)
.|+|||||++.+++....+ ..++ ++.+-+.+.. .+.++.+++-..+-.....++... ....+.+++. .|+
T Consensus 183 sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~ 261 (422)
T 3ice_A 183 PKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKK 261 (422)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999998876543 2233 3446666443 333333332000000001111111 1112233333 579
Q ss_pred cEEEEEeCCCCc
Q 048755 73 KILIILDDIWGS 84 (674)
Q Consensus 73 r~LlVlDdv~~~ 84 (674)
.+|+++||+...
T Consensus 262 dVLil~DslTR~ 273 (422)
T 3ice_A 262 DVIILLDSITRL 273 (422)
T ss_dssp EEEEEEECHHHH
T ss_pred CEEEEEeCchHH
Confidence 999999998543
No 270
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.99 E-value=1.6 Score=48.87 Aligned_cols=121 Identities=11% Similarity=0.190 Sum_probs=61.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|+||||||+.+++..... | +.++.+. +...... ........+.+........++++|++
T Consensus 247 ~GtGKTtLarala~~l~~~--~---i~v~~~~--------------l~~~~~g-~~~~~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 247 PGTGKTLIARAVANETGAF--F---FLINGPE--------------IMSKLAG-ESESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCE--E---EEEEHHH--------------HSSSSTT-HHHHHHHHHHHHHHHHCSEEEEEESG
T ss_pred CCCCHHHHHHHHHHHcCCc--E---EEEEchH--------------hhhhhhh-hHHHHHHHHHHHHHhcCCcEEEeccH
Confidence 6999999999999876432 2 3343311 1011111 11122333444444446789999998
Q ss_pred CCcc--------c-----hhhccCCcCC--CCCCeEEEEEeCChhhhhccC----CCcceEecCCCCHHHHHHHHHHHhC
Q 048755 82 WGSL--------D-----LEAIGIPVAD--DNGGCKVLLTARSQDVLSCKM----DCQQNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 82 ~~~~--------~-----~~~l~~~~~~--~~~gs~ilvTtr~~~~~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
+... + ...+...+.. ...+-.+|.||.......... .....+.+...+.++-.+++...+.
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp GGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred HHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 4220 0 1111111111 112344555555443221111 2234567888889999999887664
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.96 E-value=1.9 Score=42.15 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
+|+||||+|..++.+...+. ..++|++.- .+.+++.+.+...
T Consensus 77 pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 77 PSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 79999999999998776543 467776654 5677777777655
No 272
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.87 E-value=0.91 Score=43.90 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
+|+||||++..++........ ..+..++... .....+.++...+..+.+.........+...+..+ . +.=++|+|-
T Consensus 114 ~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~-~~dlvIiDT 190 (296)
T 2px0_A 114 TGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-S-EYDHVFVDT 190 (296)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-G-GSSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-c-CCCEEEEeC
Confidence 799999999999988875321 2355555532 22334444444444444322111222222333333 2 345788894
Q ss_pred C
Q 048755 81 I 81 (674)
Q Consensus 81 v 81 (674)
.
T Consensus 191 ~ 191 (296)
T 2px0_A 191 A 191 (296)
T ss_dssp C
T ss_pred C
Confidence 3
No 273
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.25 E-value=0.78 Score=46.71 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHhhhhccc-Cc-eEEEEEecC-CcCHHHHHHHHHHHhCCC-------CcccchHH------HHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNL-FE-KVISSRVSQ-TPQIKEIQREIAEKLGLK-------IDEESETV------RAWRLL 65 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~-F~-~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~~~ 65 (674)
+|+|||+|+.++++.....+. -+ .++++-+.+ ...+.++.+++.+.=... ..+++... ....+.
T Consensus 160 ~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~tiA 239 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTAA 239 (465)
T ss_dssp TTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 599999999999998765211 11 455566654 345667777765531111 11111111 123455
Q ss_pred HHHH--cCCcEEEEEeCCC
Q 048755 66 EQLK--KETKILIILDDIW 82 (674)
Q Consensus 66 ~~l~--~~kr~LlVlDdv~ 82 (674)
+++. .|+.+|+++||+.
T Consensus 240 Eyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 240 EYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHTTCCEEEEEEECHH
T ss_pred HHHHHhcCCeEEEEEcChH
Confidence 6665 3899999999984
No 274
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.20 E-value=1.3 Score=44.02 Aligned_cols=47 Identities=30% Similarity=0.236 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccC----ceEEEEEecCCcCHHHHHHHHHHHhC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF----EKVISSRVSQTPQIKEIQREIAEKLG 49 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~l~ 49 (674)
.|+|||||+..++......... ..++|++....+....+ ..+++..+
T Consensus 140 ~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~ 190 (349)
T 1pzn_A 140 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRG 190 (349)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTT
T ss_pred CCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcC
Confidence 6999999999999876321111 24689888665544333 33454443
No 275
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.83 E-value=0.82 Score=46.52 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCCcHHHHHHHHHHhhhhc--------ccCc-eEEEEEecCC-cCHHHHHHHHHHHhCCC-------CcccchHH-----
Q 048755 2 GGIGKTTLVKEVGRQAKEN--------NLFE-KVISSRVSQT-PQIKEIQREIAEKLGLK-------IDEESETV----- 59 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~--------~~F~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 59 (674)
+|+|||+|+.++++..... ++-+ .++++-+.+. ..+.++.+++.+.=... ..+++...
T Consensus 156 ~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~~ 235 (464)
T 3gqb_B 156 SGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTP 235 (464)
T ss_dssp TTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHHH
Confidence 5999999999999886642 1112 4555556543 35666666654421011 01111111
Q ss_pred -HHHHHHHHHH--cCCcEEEEEeCCC
Q 048755 60 -RAWRLLEQLK--KETKILIILDDIW 82 (674)
Q Consensus 60 -~~~~~~~~l~--~~kr~LlVlDdv~ 82 (674)
....+.+++. .|+.+|+++||+.
T Consensus 236 ~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 236 RMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 2234556665 3799999999984
No 276
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=87.34 E-value=0.61 Score=42.54 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIK 38 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (674)
||+||||+|..++....... .+.-|+.....+..
T Consensus 10 GGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~ 43 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSAT 43 (209)
T ss_dssp TTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHH
Confidence 89999999999999888653 68888887655433
No 277
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.12 E-value=0.23 Score=45.75 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=54.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHc----CCcEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKK----ETKILII 77 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~----~kr~LlV 77 (674)
.|+||||+|..++++...+. ..++.+...... + ...+|++.++....... ......+.+.+.. ++.-+||
T Consensus 21 mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~-~~~~~~i~~~i~~~~~~~~~dvVi 94 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVE-VESAPEILNYIMSNSFNDETKVIG 94 (223)
T ss_dssp TTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEE-ESSTHHHHHHHHSTTSCTTCCEEE
T ss_pred CCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCccccc-cCCHHHHHHHHHHHhhCCCCCEEE
Confidence 49999999999999987652 234444433321 1 23355555654322211 0111223333332 3344999
Q ss_pred EeCCCCc--cchhhccCCcCCCCCCeEEEEEeCChh
Q 048755 78 LDDIWGS--LDLEAIGIPVADDNGGCKVLLTARSQD 111 (674)
Q Consensus 78 lDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtr~~~ 111 (674)
+|.+... ++++.+. .+.. .|-.||+|.++.+
T Consensus 95 IDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 95 IDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp ECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred EecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 9999753 2333332 2222 2677888888554
No 278
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.07 E-value=1.9 Score=38.80 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=28.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
-|+||||.++.+++....++ ..++..........-+..+.++..
T Consensus 9 DGsGKsTq~~~L~~~L~~~g--~~v~~treP~~t~~~~~ir~~l~~ 52 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEKRG--KKVILKREPGGTETGEKIRKILLE 52 (197)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCcHHHHHHHHhhc
Confidence 49999999999999988662 245544443333444555555543
No 279
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.74 E-value=0.83 Score=46.79 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccC--ceEEEEEecCC-cCHHHHHHHHHHHhCCCC-------cccchH------HHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLF--EKVISSRVSQT-PQIKEIQREIAEKLGLKI-------DEESET------VRAWRLL 65 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~~------~~~~~~~ 65 (674)
+|+|||+|+.+++.+....+.= +.++++-+.+. ..+.++.+++.+.=.... .+++.. .....+.
T Consensus 161 ~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~tiA 240 (469)
T 2c61_A 161 SGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTAA 240 (469)
T ss_dssp TTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 6999999999999987653211 24566666543 356677777765421111 111111 1223455
Q ss_pred HHHH--cCCcEEEEEeCCC
Q 048755 66 EQLK--KETKILIILDDIW 82 (674)
Q Consensus 66 ~~l~--~~kr~LlVlDdv~ 82 (674)
+++. .|+.+|+++||+.
T Consensus 241 Eyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 241 EYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHCCEEEEEEECHH
T ss_pred HHHHHhcCCeEEEEEeCHH
Confidence 5555 5899999999963
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.73 E-value=0.29 Score=43.26 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
++|+||||+|+.++.+..
T Consensus 11 ~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999998765
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.83 E-value=2.4 Score=41.05 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=41.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCc---ccchH-HHH-HHHHHHHHcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKID---EESET-VRA-WRLLEQLKKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~-~~~-~~~~~~l~~~kr~L 75 (674)
+|+||||++..++...... =..+..++..... ...+-++..++..+...- ...+. ... ..+...+.. +.=+
T Consensus 113 ~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~-~~dv 189 (306)
T 1vma_A 113 NGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALAR-NKDV 189 (306)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHT-TCSE
T ss_pred CCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhc-CCCE
Confidence 6999999999999988754 1246666653221 222233445555554321 11111 111 123333333 3447
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|...
T Consensus 190 vIiDtpg 196 (306)
T 1vma_A 190 VIIDTAG 196 (306)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 8889664
No 282
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=85.69 E-value=2.1 Score=39.78 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQRE 43 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 43 (674)
+|+||||+|.+++...... =..++|++... +..++.+.
T Consensus 32 ~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 32 PGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH
Confidence 6999999999998766543 23578877654 34444443
No 283
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=85.46 E-value=0.27 Score=48.86 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=40.9
Q ss_pred CCCcHHHHHHHHHHhhhhc-ccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCcccchHH------HHHHHHHHHH-cCC
Q 048755 2 GGIGKTTLVKEVGRQAKEN-NLFEKVISSRVSQTP-QIKEIQREIAEKLGLKIDEESETV------RAWRLLEQLK-KET 72 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~-~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~------~~~~~~~~l~-~~k 72 (674)
+|+|||+|+.++++....+ ..+. ++++-+.+.. .+.++.+++...+-....+++... ....+.+++. .|+
T Consensus 184 ~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEyfrd~G~ 262 (427)
T 3l0o_A 184 PKAGKTTILKEIANGIAENHPDTI-RIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKRLVEFNY 262 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6999999999999987643 1233 3445555432 111222221100000111111111 1122333333 579
Q ss_pred cEEEEEeCCCCc
Q 048755 73 KILIILDDIWGS 84 (674)
Q Consensus 73 r~LlVlDdv~~~ 84 (674)
.+|+++||+...
T Consensus 263 dVLil~DslTR~ 274 (427)
T 3l0o_A 263 DVVILLDSLTRL 274 (427)
T ss_dssp EEEEEEECHHHH
T ss_pred CEEEecccchHH
Confidence 999999998643
No 284
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.92 E-value=2.7 Score=40.52 Aligned_cols=79 Identities=23% Similarity=0.164 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCc----ccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKID----EESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+||||++..++...... =..+.+++..... ...+.++...+..+...- ..+....+...++.+..++-=++
T Consensus 107 ~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D~V 184 (297)
T 1j8m_F 107 QGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEII 184 (297)
T ss_dssp SCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 7999999999999887754 2346677664322 233334455555554321 11223333445555542222378
Q ss_pred EEeCCC
Q 048755 77 ILDDIW 82 (674)
Q Consensus 77 VlDdv~ 82 (674)
|+|-.-
T Consensus 185 iIDTpg 190 (297)
T 1j8m_F 185 IVDTAG 190 (297)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 888653
No 285
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=84.64 E-value=2.6 Score=40.64 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHHHHHhCCCCc----ccchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREIAEKLGLKID----EESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+||||++..++....... ..+.+++..... .....+..+.+..+...- .......+...+..+...+.=++
T Consensus 107 ~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~v 184 (295)
T 1ls1_A 107 QGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLI 184 (295)
T ss_dssp TTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEE
Confidence 79999999999998877541 246666654322 112223345555554322 11222333344444432234578
Q ss_pred EEeCC
Q 048755 77 ILDDI 81 (674)
Q Consensus 77 VlDdv 81 (674)
|+|-.
T Consensus 185 iiDtp 189 (295)
T 1ls1_A 185 LVDTA 189 (295)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 88976
No 286
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=84.60 E-value=0.89 Score=41.10 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=25.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 36 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (674)
||+||||+|..++.....+. ..+.-|+.....+
T Consensus 11 gG~GKTt~a~~la~~la~~g--~~vlliD~D~~~~ 43 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSG--YNIAVVDTDPQMS 43 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred CCccHHHHHHHHHHHHHHCC--CeEEEEECCCCCC
Confidence 89999999999999887642 3577778765443
No 287
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.49 E-value=1.9 Score=40.18 Aligned_cols=40 Identities=23% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREI 44 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 44 (674)
+|+|||++|.+++.+...+. -..+++++.. .+.+++.+.+
T Consensus 39 pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 39 TGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 69999999999876543321 2246665553 4555555554
No 288
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=84.07 E-value=0.47 Score=41.52 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 9 ~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp SSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998765
No 289
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=84.04 E-value=1 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 34 (674)
||+||||+|..++.....+. + .+..+++...
T Consensus 15 gGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~q 45 (228)
T 2r8r_A 15 PGVGKTYAMLQAAHAQLRQG-V-RVMAGVVETH 45 (228)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-C-CEEEEECCCT
T ss_pred CCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCCC
Confidence 89999999999999887552 3 3555566543
No 290
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=84.02 E-value=2.6 Score=41.38 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
+|+||||+|..++.+.... =..+.|++. .-+.+++...++..
T Consensus 55 pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 55 PSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 6999999999999887753 135667555 55677777777554
No 291
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=83.99 E-value=2.3 Score=39.66 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHHhhh-hcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAK-ENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~-~~~~F~~~~wv~~~ 32 (674)
.|+|||||++.++.... .. -..++++...
T Consensus 39 nGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~ 68 (251)
T 2ehv_A 39 TGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE 68 (251)
T ss_dssp TTSSHHHHHHHHHHHHHHHH--CCCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHhC--CCeEEEEEcc
Confidence 69999999999985433 22 2345665543
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=83.17 E-value=3.9 Score=41.81 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHHHhCCCC----cccchHHHHHHHHHHHHcCCcEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAEKLGLKI----DEESETVRAWRLLEQLKKETKIL 75 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~~l~~~kr~L 75 (674)
.||+||||+|.+++.....+... .+.-|++... ....+.++......+.+. ...+....+...+..+....-=+
T Consensus 108 ~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~ 186 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLKFYDV 186 (433)
T ss_dssp STTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 38999999999999988765122 4555665432 233333334444444321 11122233334444444222225
Q ss_pred EEEeCC
Q 048755 76 IILDDI 81 (674)
Q Consensus 76 lVlDdv 81 (674)
+|+|-.
T Consensus 187 VIIDTp 192 (433)
T 2xxa_A 187 LLVDTA 192 (433)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 666764
No 293
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.99 E-value=0.55 Score=41.74 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 13 ~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 294
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.58 E-value=3.5 Score=42.04 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCCCCcc----cchHHHHHHHHHHHHcCCcEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGLKIDE----ESETVRAWRLLEQLKKETKILI 76 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~l~~~kr~Ll 76 (674)
+|+||||++..++.....+. ..+..++... .....+.++...+..+.+... ..........+..+.....=++
T Consensus 106 ~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~~~~~Dvv 183 (433)
T 3kl4_A 106 QGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFVKNKMDII 183 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTTTTTCSEE
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999999999998887542 2355555432 123334444555555543211 1222222333333332233466
Q ss_pred EEeCCC
Q 048755 77 ILDDIW 82 (674)
Q Consensus 77 VlDdv~ 82 (674)
|+|-..
T Consensus 184 IIDTaG 189 (433)
T 3kl4_A 184 IVDTAG 189 (433)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 788654
No 295
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=82.48 E-value=0.59 Score=42.18 Aligned_cols=18 Identities=44% Similarity=0.505 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 33 ~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 579999999999998764
No 296
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=82.42 E-value=1.8 Score=44.62 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=44.8
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCce-EEEEEecCCc-CHHHHHHHHHHHhCCCC-------cccchHHH------HHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFEK-VISSRVSQTP-QIKEIQREIAEKLGLKI-------DEESETVR------AWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~~------~~~~~ 65 (674)
+|+|||+|| ..+++... -+. ++++-+.+.. .+.++.+++.+.=.... .+++.... ...+-
T Consensus 171 ~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (502)
T 2qe7_A 171 RQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAMG 246 (502)
T ss_dssp SSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhhc----CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 599999995 57777653 343 4666666544 56666777665322211 11111111 12333
Q ss_pred HHHH-cCCcEEEEEeCCCC
Q 048755 66 EQLK-KETKILIILDDIWG 83 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~~ 83 (674)
+++. .|+.+|+++||+..
T Consensus 247 Eyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 247 EYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHTTTCEEEEEEECHHH
T ss_pred HHHHHcCCcEEEEEecHHH
Confidence 4443 47999999999743
No 297
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=82.27 E-value=0.62 Score=40.96 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 12 ~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 12 FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998765
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=82.22 E-value=3 Score=37.45 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
..|+||||+|+.++...
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999998866
No 299
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=81.81 E-value=1.8 Score=44.63 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=44.5
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCce-EEEEEecCCc-CHHHHHHHHHHHhCCC-------CcccchHH------HHHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFEK-VISSRVSQTP-QIKEIQREIAEKLGLK-------IDEESETV------RAWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~~~~ 65 (674)
.|+|||+|| ..+++... -+. ++++-+.+.. .+.++.+++.+.=... ..+++... ....+-
T Consensus 184 ~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiA 259 (515)
T 2r9v_A 184 RQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAMG 259 (515)
T ss_dssp TTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 599999995 57777653 343 4666666544 5666677665431111 11111111 122334
Q ss_pred HHHH-cCCcEEEEEeCCCC
Q 048755 66 EQLK-KETKILIILDDIWG 83 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~~ 83 (674)
+++. .|+.+|+++||+..
T Consensus 260 Eyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 260 EYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHTTTCEEEEEEETHHH
T ss_pred HHHHHcCCcEEEEeccHHH
Confidence 4443 47999999999753
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=81.79 E-value=0.66 Score=41.42 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.6
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+|+.++.....
T Consensus 9 ~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp CTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999999998764
No 301
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=81.76 E-value=1 Score=42.18 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 36 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (674)
||+||||+|..++....... ..|.-|+.....+
T Consensus 9 GGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~ 41 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSC 41 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSC
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcC
Confidence 89999999999999888653 3577777765443
No 302
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.60 E-value=0.68 Score=41.28 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+|+.++.....
T Consensus 11 ~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CTTSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 4799999999999997763
No 303
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.49 E-value=2.6 Score=51.35 Aligned_cols=74 Identities=23% Similarity=0.242 Sum_probs=47.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCc-----ccchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKID-----EESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~~~~l-~~~kr~L 75 (674)
+|+|||+||.+++.....+ =..++|+++...++... ++.++.+.+ .....+.+..+.+++ ...+.-+
T Consensus 1436 pGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~l 1508 (2050)
T 3cmu_A 1436 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1508 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCE
Confidence 6999999999998876644 23588888887776665 455553321 112223333444433 4567889
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
||+|++.
T Consensus 1509 VVIDsi~ 1515 (2050)
T 3cmu_A 1509 IVVDSVA 1515 (2050)
T ss_dssp EEESCGG
T ss_pred EEEcChh
Confidence 9999984
No 304
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=81.33 E-value=4.4 Score=41.32 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=16.8
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+||||++.+++.....+
T Consensus 109 ~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 109 QGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp TTSSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 7999999999999887754
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.30 E-value=0.65 Score=40.92 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGR 15 (674)
Q Consensus 1 mgGiGKTtla~~~~~ 15 (674)
+.|+||||+|+.++.
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=80.92 E-value=0.72 Score=41.21 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 13 ~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 13 HPATGKTTLSQALATGLR 30 (193)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999988763
No 307
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=80.74 E-value=1.3 Score=39.38 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.3
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+|+.++......
T Consensus 21 ~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999987754
No 308
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.68 E-value=0.75 Score=40.64 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 19 ~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 19 TPGVGKTTLGKELASKSG 36 (180)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=80.62 E-value=0.78 Score=39.98 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 15 ~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998765
No 310
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=80.53 E-value=1.7 Score=39.40 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+|+.++.+....
T Consensus 12 ~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 46999999999999987654
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.00 E-value=0.81 Score=40.02 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 12 ~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988754
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=79.66 E-value=0.83 Score=41.26 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.++...
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 46999999999999876
No 313
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=79.62 E-value=2.9 Score=43.15 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=46.0
Q ss_pred CCCcHHHHH-HHHHHhhhh----cccCc-eEEEEEecCCc-CHHHHHHHHHHHhCCC-------CcccchHH------HH
Q 048755 2 GGIGKTTLV-KEVGRQAKE----NNLFE-KVISSRVSQTP-QIKEIQREIAEKLGLK-------IDEESETV------RA 61 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~----~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------~~ 61 (674)
.|+|||+|| ..+++.... .++-+ .++++-+.+.. .+.++.+++.+.=... ..+++... ..
T Consensus 171 ~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a 250 (510)
T 2ck3_A 171 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSG 250 (510)
T ss_dssp TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHHH
Confidence 699999995 577776653 11233 36667776544 5666676666532111 01111111 11
Q ss_pred HHHHHHHH-cCCcEEEEEeCCCC
Q 048755 62 WRLLEQLK-KETKILIILDDIWG 83 (674)
Q Consensus 62 ~~~~~~l~-~~kr~LlVlDdv~~ 83 (674)
..+-+++. .|+.+|+++||+..
T Consensus 251 ~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 251 CSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHcCCcEEEEEcCHHH
Confidence 23344443 47999999999853
No 314
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=79.49 E-value=0.86 Score=41.11 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 8 ~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CTTSCHHHHHHHHHHHHC
T ss_pred CCccCHHHHHHHHHHhcC
Confidence 479999999999998765
No 315
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.45 E-value=7.2 Score=40.09 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
+|+||||+|..++.+...... ..++|++.- -+..++.+.++..
T Consensus 209 pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 209 PAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 699999999999988775311 247776654 4566777776543
No 316
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=79.32 E-value=1.6 Score=41.36 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++.....++ ..+.-|+...
T Consensus 10 GGvGKTT~a~nLA~~la~~G--~~VlliD~D~ 39 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHAMG--KTIMVVGCDP 39 (269)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CCEEEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHCC--CcEEEEcCCC
Confidence 89999999999999887542 2577777753
No 317
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.22 E-value=6.1 Score=40.16 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=41.2
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHH--HHHHHHHHHhCCCCc----ccchHHHHHHHHHHHHcCCcE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIK--EIQREIAEKLGLKID----EESETVRAWRLLEQLKKETKI 74 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~kr~ 74 (674)
.+|+||||++..++....... ..+..++.. .+... +.++...+..+.+.- .......+...++.+.. +.|
T Consensus 106 ~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D-~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~-~~~ 181 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYKGKG--RRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL-EAR 181 (425)
T ss_dssp CTTSSHHHHHHHHHHHHHTTT--CCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH-TTC
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CeEEEeecc-ccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH-CCC
Confidence 379999999999999887542 245566553 33222 223445555554321 11222333344444432 233
Q ss_pred -EEEEeCC
Q 048755 75 -LIILDDI 81 (674)
Q Consensus 75 -LlVlDdv 81 (674)
++|+|-.
T Consensus 182 DvVIIDTa 189 (425)
T 2ffh_A 182 DLILVDTA 189 (425)
T ss_dssp SEEEEECC
T ss_pred CEEEEcCC
Confidence 6777854
No 318
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=79.11 E-value=1.6 Score=41.45 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 37 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~ 37 (674)
||+||||+|..++.... +. ..|.-|++....+.
T Consensus 37 GGvGKTT~a~~LA~~la-~g--~~VlliD~D~~~~~ 69 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS-KN--NKVLLIDMDTQASI 69 (267)
T ss_dssp SSSCHHHHHHHHHHHHT-TT--SCEEEEEECTTCHH
T ss_pred CCchHHHHHHHHHHHHH-CC--CCEEEEECCCCCCH
Confidence 89999999999999888 52 45777888654433
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.91 E-value=0.91 Score=42.82 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++.+..
T Consensus 9 ~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHhcCC
Confidence 479999999999998764
No 320
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.91 E-value=0.94 Score=39.56 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 10 ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999998764
No 321
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=78.67 E-value=2.9 Score=37.13 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+|+.+++....
T Consensus 8 ~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp STTSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4699999999999998753
No 322
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.64 E-value=0.95 Score=40.10 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 10 ~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998764
No 323
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=78.51 E-value=0.99 Score=39.21 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.+++...
T Consensus 8 ~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 324
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=78.43 E-value=0.98 Score=40.04 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 12 ~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQELG 29 (186)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988653
No 325
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=78.21 E-value=2.2 Score=41.82 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 37 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~ 37 (674)
||+||||+|..++...... =..+.-|+.....+.
T Consensus 23 GGvGKTTvA~~LA~~lA~~--G~rVLlvD~D~~~~l 56 (324)
T 3zq6_A 23 GGVGKTTISAATALWMARS--GKKTLVISTDPAHSL 56 (324)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCSSCCH
T ss_pred CCchHHHHHHHHHHHHHHC--CCcEEEEeCCCCcCH
Confidence 8999999999999888755 224666666544443
No 326
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=77.83 E-value=1.9 Score=41.42 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++....... ..|.-|+...
T Consensus 11 GGvGKTT~a~nLA~~La~~G--~rVlliD~D~ 40 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAEMG--KKVMIVGCDP 40 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEECS
T ss_pred CcCcHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 89999999999999887542 2477777754
No 327
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=77.75 E-value=0.91 Score=40.47 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHHh
Q 048755 1 MGGIGKTTLVKEVGRQ 16 (674)
Q Consensus 1 mgGiGKTtla~~~~~~ 16 (674)
+.|+||||+++.++..
T Consensus 17 ~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 17 HPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTSCHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 4799999999999876
No 328
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=77.72 E-value=3 Score=43.06 Aligned_cols=77 Identities=19% Similarity=0.254 Sum_probs=42.2
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCc-eEEEEEecCCc-CHHHHHHHHHHHhCCC--------Cccc-----chHHHHHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFE-KVISSRVSQTP-QIKEIQREIAEKLGLK--------IDEE-----SETVRAWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~~-----~~~~~~~~~~ 65 (674)
+|+|||+|| ..+++... -+ .++++-+.+.. .+.++.+++.+.=... .++. ........+-
T Consensus 172 ~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~tiA 247 (507)
T 1fx0_A 172 RQTGKTAVATDTILNQQG----QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAALA 247 (507)
T ss_dssp SSSSHHHHHHHHHHTCCT----TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 699999995 57777653 33 34666666543 4555555554321110 0110 0111222333
Q ss_pred HHHH-cCCcEEEEEeCCC
Q 048755 66 EQLK-KETKILIILDDIW 82 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~ 82 (674)
+++. .|+.+|+++||+.
T Consensus 248 Eyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 248 EYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHTTCEEEEEEECHH
T ss_pred HHHHHcCCcEEEEEecHH
Confidence 3333 4799999999974
No 329
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.72 E-value=3 Score=37.10 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
..|+||||+|+.+++....
T Consensus 8 ~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 3699999999999998754
No 330
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.71 E-value=1 Score=40.56 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 33 ~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 33 LSGSGKSTLACALNQMLY 50 (200)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999999876
No 331
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=77.66 E-value=4.2 Score=48.84 Aligned_cols=76 Identities=22% Similarity=0.258 Sum_probs=45.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l-~~~kr~L 75 (674)
+|+||||||.+++....... ..++|++........ .++.++.+.+. ...........+++ ...+.-+
T Consensus 741 PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~l 813 (1706)
T 3cmw_A 741 ESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 813 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCCE
Confidence 59999999999999877542 357887776665543 26666644221 11222222222222 2345679
Q ss_pred EEEeCCCCc
Q 048755 76 IILDDIWGS 84 (674)
Q Consensus 76 lVlDdv~~~ 84 (674)
||+|.+.-.
T Consensus 814 VVIDsLq~l 822 (1706)
T 3cmw_A 814 IVVDSVAAL 822 (1706)
T ss_dssp EEESCSTTC
T ss_pred EEEechhhh
Confidence 999998643
No 332
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=77.66 E-value=2.1 Score=42.11 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 35 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (674)
||+||||+|..++...... =..+.-|+.....
T Consensus 25 GGvGKTt~a~~lA~~la~~--g~~vllid~D~~~ 56 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAH 56 (334)
T ss_dssp TTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSC
T ss_pred CCccHHHHHHHHHHHHHhC--CCcEEEEECCCCC
Confidence 8999999999999888754 2357777776443
No 333
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=77.54 E-value=5.7 Score=41.00 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=28.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIA 45 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 45 (674)
+|+||||+|..++........ ..++|++.. .+..++.+.++
T Consensus 212 pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 212 PSVGKTAFALNIAQNVATKTN-ENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TTSCHHHHHHHHHHHHHHHSS-CCEEEEESS--SCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHH
Confidence 699999999999998775311 257776654 34566666654
No 334
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=77.37 E-value=1.6 Score=40.38 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++.....+ =..+.-|+...
T Consensus 12 gGvGKTt~a~~LA~~la~~--g~~VlliD~D~ 41 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDR--GRKVLAVDGDL 41 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEeCCC
Confidence 8999999999999988754 23577777754
No 335
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=77.36 E-value=1.1 Score=39.87 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHHh
Q 048755 1 MGGIGKTTLVKEVGRQ 16 (674)
Q Consensus 1 mgGiGKTtla~~~~~~ 16 (674)
+.|+||||+|+.++..
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999999886
No 336
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=77.28 E-value=6.6 Score=36.03 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.+++.+.
T Consensus 16 ~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998775
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=77.04 E-value=1.1 Score=39.91 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 11 ~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987653
No 338
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=77.01 E-value=7.2 Score=40.13 Aligned_cols=78 Identities=26% Similarity=0.310 Sum_probs=44.6
Q ss_pred CCCcHHHHH-HHHHHhhhhcccCc-eEEEEEecCCc-CHHHHHHHHHHHhCCCC-------cccchHH------HHHHHH
Q 048755 2 GGIGKTTLV-KEVGRQAKENNLFE-KVISSRVSQTP-QIKEIQREIAEKLGLKI-------DEESETV------RAWRLL 65 (674)
Q Consensus 2 gGiGKTtla-~~~~~~~~~~~~F~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~------~~~~~~ 65 (674)
.|+|||+|| ..+++... -+ .++++-+.+.. .+.++.+++.+.=.... .+++... ....+-
T Consensus 171 ~g~GKT~l~l~~I~n~~~----~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiA 246 (513)
T 3oaa_A 171 RQTGKTALAIDAIINQRD----SGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAMG 246 (513)
T ss_dssp SSSSHHHHHHHHHHTTSS----SSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHhhcc----CCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHHH
Confidence 489999996 57777522 23 35677777654 56677777655421211 1111111 112233
Q ss_pred HHHH-cCCcEEEEEeCCCC
Q 048755 66 EQLK-KETKILIILDDIWG 83 (674)
Q Consensus 66 ~~l~-~~kr~LlVlDdv~~ 83 (674)
+++. .|+.+|+++||+..
T Consensus 247 Eyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 247 EYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHTTCEEEEEEETHHH
T ss_pred HHHHhcCCCEEEEecChHH
Confidence 3333 57999999999853
No 339
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=76.97 E-value=3 Score=37.82 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.0
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+|+.++......
T Consensus 17 ~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp STTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 36999999999999987644
No 340
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.78 E-value=1.2 Score=39.91 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 17 ~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988664
No 341
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=76.76 E-value=0.78 Score=40.55 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=11.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 13 ~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CC----CHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 479999999999988755
No 342
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=76.72 E-value=2.3 Score=40.78 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKE 39 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~ 39 (674)
||+||||+|..++....... ..|.-|+... ..+...
T Consensus 14 GGvGKTT~a~nLA~~La~~G--~~VlliD~D~~q~~l~~ 50 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYGG--AKVAVIDLDLRQRTSAR 50 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHTT--CCEEEEECCTTTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CcEEEEECCCCCCCHHH
Confidence 89999999999999887542 2466677765 444333
No 343
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.72 E-value=10 Score=39.43 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEe
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRV 31 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~ 31 (674)
+|+||||++.+++.....+. . .+.-|+.
T Consensus 110 ~GvGKTTl~~kLA~~l~~~G-~-kVllVd~ 137 (504)
T 2j37_W 110 QGSGKTTTCSKLAYYYQRKG-W-KTCLICA 137 (504)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-C-CEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhCC-C-eEEEEec
Confidence 79999999999998877542 2 3555555
No 344
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.71 E-value=15 Score=47.07 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=42.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCccc-chHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEE-SETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
.|+|||++++.+...... + ..+.+++|..-+...++..+-..+....... +.. ......||+.++++||
T Consensus 1313 tGtGKT~li~~~L~~l~~---~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~------~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A 1313 PGSGKTMTLTSTLRAFPD---F-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV------LRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp TTSSHHHHHHHHGGGCTT---E-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEE------EEESSTTCEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCC---C-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcc------cCCCcCCceEEEEecc
Confidence 699999998877654431 2 3567888888888888877754442111000 000 0000126889999999
Q ss_pred CC
Q 048755 81 IW 82 (674)
Q Consensus 81 v~ 82 (674)
+.
T Consensus 1383 iN 1384 (3245)
T 3vkg_A 1383 IN 1384 (3245)
T ss_dssp TT
T ss_pred cC
Confidence 85
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=76.49 E-value=1.2 Score=40.14 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 28 ~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 346
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=76.10 E-value=1.2 Score=39.83 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 20 ~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 347
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=76.08 E-value=1.2 Score=40.40 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+++.+.....
T Consensus 20 ~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CTTSCHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhCc
Confidence 479999999999998764
No 348
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=76.03 E-value=1.8 Score=40.92 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 34 (674)
||+||||+|..++......+ ..+.-|+....
T Consensus 28 GGvGKTT~a~nLA~~la~~G--~~VlliD~D~~ 58 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQG--KKVGILDADFL 58 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHTT--CCEEEEECCSS
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 89999999999999887542 24666776543
No 349
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=75.86 E-value=1.3 Score=38.85 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.++...
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998764
No 350
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=75.83 E-value=1.3 Score=41.76 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++.....++ ..+.-|+...
T Consensus 12 gGvGKTt~a~~LA~~la~~g--~~VlliD~D~ 41 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQKG--KKTVVIDFAI 41 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CCCcHHHHHHHHHHHHHhCC--CcEEEEECCC
Confidence 89999999999999888542 2477777764
No 351
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=75.82 E-value=1.2 Score=41.46 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++........ ..+.-|+...
T Consensus 14 GGvGKTt~a~~LA~~la~~~g-~~VlliD~D~ 44 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQEPD-IHVLAVDISL 44 (245)
T ss_dssp TTSSHHHHHHHHHHHHTTSTT-CCEEEEECCT
T ss_pred CCcchHHHHHHHHHHHHhCcC-CCEEEEECCC
Confidence 899999999999998875411 2467777753
No 352
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=75.71 E-value=8.4 Score=40.34 Aligned_cols=43 Identities=16% Similarity=0.139 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
+|+||||+|.+++.+...+.. ..++|++. ..+.+++.+.++..
T Consensus 251 pG~GKT~lal~~a~~~a~~~g-~~vl~~s~--E~s~~~l~~r~~~~ 293 (503)
T 1q57_A 251 SGMVMSTFVRQQALQWGTAMG-KKVGLAML--EESVEETAEDLIGL 293 (503)
T ss_dssp SCHHHHHHHHHHHHHHTTTSC-CCEEEEES--SSCHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHhcC-CcEEEEec--cCCHHHHHHHHHHH
Confidence 699999999999988775411 24777665 44567777776544
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=75.69 E-value=1.3 Score=40.65 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 12 ~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999998764
No 354
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=75.66 E-value=2 Score=43.08 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++.....+ =..|.-|++..
T Consensus 153 GGvGKTT~a~nLA~~La~~--g~rVlliD~D~ 182 (373)
T 3fkq_A 153 GGVGTSTVAAACAIAHANM--GKKVFYLNIEQ 182 (373)
T ss_dssp TTSSHHHHHHHHHHHHHHH--TCCEEEEECCT
T ss_pred CCChHHHHHHHHHHHHHhC--CCCEEEEECCC
Confidence 8999999999999887754 23578888763
No 355
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=75.46 E-value=1.2 Score=42.04 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
++|+||||+|+.++....
T Consensus 12 ~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 579999999999998755
No 356
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=75.39 E-value=1.3 Score=41.74 Aligned_cols=17 Identities=53% Similarity=0.712 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
||+||||++..++....
T Consensus 23 gGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 23 AGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999998776
No 357
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=75.15 E-value=1.4 Score=40.41 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=16.9
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
||+||||+|..++.....+
T Consensus 11 gGvGKTt~a~nLa~~la~~ 29 (224)
T 1byi_A 11 TEVGKTVASCALLQAAKAA 29 (224)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC
Confidence 8999999999999887754
No 358
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=75.12 E-value=2.5 Score=41.02 Aligned_cols=31 Identities=23% Similarity=0.340 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 34 (674)
||+||||+|..++....... ..|.-|++...
T Consensus 50 GGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred CCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 89999999999999887652 25777777643
No 359
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=74.99 E-value=7.8 Score=39.79 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
+|+||||+|.+++.+...++ ..++|++. .-+.+++.+.++..
T Consensus 206 pG~GKTtlal~ia~~~a~~g--~~vl~fSl--Ems~~ql~~R~~~~ 247 (444)
T 3bgw_A 206 PSMGKTAFALKQAKNMSDND--DVVNLHSL--EMGKKENIKRLIVT 247 (444)
T ss_dssp SSSSHHHHHHHHHHHHHHTT--CEEEEECS--SSCTTHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHcC--CEEEEEEC--CCCHHHHHHHHHHH
Confidence 79999999999998877551 25676554 34555666665543
No 360
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=74.89 E-value=1.4 Score=40.55 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 13 ~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 13 APASGKGTQCELIKTKYQ 30 (222)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998765
No 361
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=74.62 E-value=4.2 Score=42.42 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc-CHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP-QIKEIQREI 44 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i 44 (674)
.|+|||+|+.++++... -+.++++-+.+.. .+.++.+++
T Consensus 236 ~g~GKT~L~~~ia~~~~----~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 236 AGSGKTVTQHQLAKWSD----AQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CSHHHHHHHHHHHHHSS----CSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 58999999999987633 3467777777554 455666654
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=74.62 E-value=1.3 Score=40.79 Aligned_cols=18 Identities=22% Similarity=0.315 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 15 ~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CTTSSHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 479999999999988653
No 363
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=74.60 E-value=2.7 Score=41.72 Aligned_cols=29 Identities=34% Similarity=0.495 Sum_probs=21.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||+|..++....... ..+.-|+..
T Consensus 35 GGvGKTTvA~~LA~~lA~~G--~rVLlvD~D 63 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLAEKG--LKVVIVSTD 63 (349)
T ss_dssp SSTTHHHHHHHHHHHHHHSS--CCEEEEECC
T ss_pred CCccHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 89999999999998877552 245555553
No 364
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=74.43 E-value=2.3 Score=47.03 Aligned_cols=121 Identities=16% Similarity=0.222 Sum_probs=58.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
+|.|||.+|+++++..... | +.++ ..+ ++ ....++. ...+.++.+......+++|+||++
T Consensus 520 PGtGKT~lAkaiA~e~~~~--f-----~~v~----~~~----l~----s~~vGes-e~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 520 PGCGKTLLAKAIANECQAN--F-----ISIK----GPE----LL----TMWFGES-EANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp TTSSHHHHHHHHHHTTTCE--E-----EECC----HHH----HH----TTTCSSC-HHHHHHHHHHHHTTCSEEEECSCG
T ss_pred CCCCchHHHHHHHHHhCCc--e-----EEec----cch----hh----ccccchH-HHHHHHHHHHHHHcCCceeechhh
Confidence 7999999999999987643 2 2332 111 11 1111222 234555666666667999999998
Q ss_pred CCcc--------c--------hhhccCCcCCC--CCCeEEEEEeCChhhh---hcc-CCCcceEecCCCCHHHHHHHHHH
Q 048755 82 WGSL--------D--------LEAIGIPVADD--NGGCKVLLTARSQDVL---SCK-MDCQQNFVVDVLNEKEAWSLFKK 139 (674)
Q Consensus 82 ~~~~--------~--------~~~l~~~~~~~--~~gs~ilvTtr~~~~~---~~~-~~~~~~~~l~~L~~~~~~~lf~~ 139 (674)
+..- . ...+...+... ..+-.||.||-..+.. ... -+-...+.++.-+.++-.++|..
T Consensus 580 Dsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~ 659 (806)
T 3cf2_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKA 659 (806)
T ss_dssp GGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTT
T ss_pred hHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHH
Confidence 6320 0 11122112111 1232333344433322 111 13445677777677777777776
Q ss_pred HhC
Q 048755 140 MTG 142 (674)
Q Consensus 140 ~~~ 142 (674)
+..
T Consensus 660 ~l~ 662 (806)
T 3cf2_A 660 NLR 662 (806)
T ss_dssp TSS
T ss_pred Hhc
Confidence 654
No 365
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=74.43 E-value=3 Score=40.24 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCc
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTP 35 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~ 35 (674)
||+||||+|..++......+ ..|.-|+.....
T Consensus 46 GGvGKTT~a~nLA~~la~~G--~rVlliD~D~q~ 77 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDKLN--LKVLMIDKDLQA 77 (298)
T ss_dssp SSSSHHHHHHHHHHHHHHTT--CCEEEEEECTTC
T ss_pred CCchHHHHHHHHHHHHHhCC--CeEEEEeCCCCC
Confidence 89999999999998877542 257777776543
No 366
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.19 E-value=1.5 Score=40.09 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++.+..
T Consensus 8 ~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999988653
No 367
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=74.02 E-value=1.5 Score=40.10 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 13 ~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999998764
No 368
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=73.88 E-value=2 Score=40.54 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=24.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~ 34 (674)
||+||||+|..++....... ..|.-|+....
T Consensus 16 GGvGKTt~a~~LA~~la~~g--~~VlliD~D~~ 46 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLARLG--KRVLLVDLDPQ 46 (257)
T ss_dssp CCHHHHHHHHHHHHHHHHTT--CCEEEEECCTT
T ss_pred CCchHHHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 89999999999999887542 35777777543
No 369
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.77 E-value=1.5 Score=39.72 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+|+.++......
T Consensus 18 ~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp STTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 36999999999999987643
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=73.73 E-value=1.5 Score=38.94 Aligned_cols=18 Identities=28% Similarity=0.220 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 14 ~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp STTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999988654
No 371
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=73.72 E-value=8.8 Score=37.37 Aligned_cols=29 Identities=28% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
+|+||||++..++...... =..+.+++..
T Consensus 114 ~G~GKTT~~~~LA~~l~~~--g~kVllid~D 142 (320)
T 1zu4_A 114 NGTGKTTSLAKMANYYAEL--GYKVLIAAAD 142 (320)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHC--CCeEEEEeCC
Confidence 7999999999999887754 2346666654
No 372
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=73.29 E-value=1.5 Score=39.54 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.+++..
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998764
No 373
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=73.27 E-value=3.1 Score=41.18 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHhhh--hcccCceEEEEEecCCc
Q 048755 2 GGIGKTTLVKEVGRQAK--ENNLFEKVISSRVSQTP 35 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~--~~~~F~~~~wv~~~~~~ 35 (674)
||+||||+|..++.... .. =..+.-|+.....
T Consensus 27 GGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~ 60 (348)
T 3io3_A 27 GGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAH 60 (348)
T ss_dssp TTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSC
T ss_pred CCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCC
Confidence 89999999999998877 33 1246667775433
No 374
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=73.23 E-value=2.4 Score=40.05 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++.....+. ..+.-|+...
T Consensus 12 gGvGKTt~a~~LA~~la~~g--~~VlliD~D~ 41 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQLG--HDVTIVDADI 41 (263)
T ss_dssp SCSCHHHHHHHHHHHHHHTT--CCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhCC--CcEEEEECCC
Confidence 89999999999999887542 2577777754
No 375
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=73.20 E-value=1.8 Score=37.66 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
.|+||||++.++......+
T Consensus 13 sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 13 KHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp TTSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhhHhc
Confidence 6999999999999987644
No 376
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=73.12 E-value=1.6 Score=39.78 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.++...
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999876
No 377
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=72.92 E-value=3.2 Score=40.44 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
|||||||.|..++--..... ..|.-|++..
T Consensus 57 GGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 89999999999998887652 2577777763
No 378
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=72.86 E-value=1.5 Score=38.89 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGR 15 (674)
Q Consensus 1 mgGiGKTtla~~~~~ 15 (674)
..|+||||+++.++.
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 369999999999986
No 379
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=72.80 E-value=1.5 Score=39.92 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
..|+||||+|+.++.+.
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999998765
No 380
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=72.75 E-value=5 Score=38.60 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=27.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEK 47 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 47 (674)
.|+|||||++.++........ ..++|++... +..++.+.+...
T Consensus 44 ~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 44 SGMGKSTFVRQQALQWGTAMG-KKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTSSHHHHHHHHHHHHHHTSC-CCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcC--CHHHHHHHHHHH
Confidence 699999999999988775411 1466665533 444555555443
No 381
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=72.54 E-value=1.4 Score=42.45 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
++|+||||+|+.++.+..
T Consensus 41 ~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CTTSCTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988653
No 382
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=72.52 E-value=1.7 Score=40.26 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 24 ~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999998765
No 383
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=72.17 E-value=1.8 Score=39.85 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 8 ~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999988763
No 384
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=72.05 E-value=3.5 Score=40.53 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++....... ..+.-|+...
T Consensus 28 GGvGKTTva~~LA~~lA~~G--~rVllvD~D~ 57 (329)
T 2woo_A 28 GGVGKTTTSCSLAIQMSKVR--SSVLLISTDP 57 (329)
T ss_dssp SSSSHHHHHHHHHHHHHTSS--SCEEEEECCT
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEECCC
Confidence 89999999999998887542 2466666653
No 385
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=72.01 E-value=5.5 Score=36.15 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=27.6
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAE 46 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 46 (674)
..|+||||+++.+++...... +..++..........-+..++++.
T Consensus 11 ~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 369999999999999887653 433443333222234455555554
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=71.47 E-value=1.9 Score=39.21 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 33 ~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQLV 50 (211)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 469999999999998876
No 387
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=71.44 E-value=6.7 Score=41.07 Aligned_cols=39 Identities=15% Similarity=0.331 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREI 44 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i 44 (674)
.|+|||+|+.++++... -+.++++-+.+. ..+.++++++
T Consensus 241 ~g~GKT~L~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 241 FGAGKTVVQHQIAKWSD----VDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp TTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 58999999999988643 245777777654 3455555543
No 388
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=71.25 E-value=1.8 Score=39.03 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGR 15 (674)
Q Consensus 1 mgGiGKTtla~~~~~ 15 (674)
..|+||||+|+.++.
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 369999999999987
No 389
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=71.23 E-value=1.9 Score=38.09 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||||++.+.....
T Consensus 14 sGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 14 HGVGRRHIKNTLITKHP 30 (180)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 69999999999998654
No 390
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=71.07 E-value=22 Score=34.65 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC-CcCHHHHHHHHHHHhCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ-TPQIKEIQREIAEKLGL 50 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 50 (674)
.|+||||+++.++...+... ..+.++.... .....+.++...+.++.
T Consensus 138 nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 138 NGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 69999999999998877542 2355554432 22345555666676664
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=70.98 E-value=1.7 Score=39.04 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.++...
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46999999999999876
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.98 E-value=2 Score=37.75 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+|+.++.....
T Consensus 13 ~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 4699999999999987654
No 393
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=70.87 E-value=7.3 Score=37.81 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=17.5
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+||.|||-++..+++..+.+
T Consensus 46 vGGTGKTP~vi~L~~~L~~~ 65 (315)
T 4ehx_A 46 VGGSGKTSFVMYLADLLKDK 65 (315)
T ss_dssp SSCCSHHHHHHHHHHHTTTS
T ss_pred eCCCChHHHHHHHHHHHhhc
Confidence 59999999999999988643
No 394
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.85 E-value=7.7 Score=47.40 Aligned_cols=74 Identities=23% Similarity=0.272 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l-~~~kr~L 75 (674)
+|+||||||.+++....... ..++|++.-...+.. .++.++.+.+. ......+....+.+ ...+.-+
T Consensus 392 pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~l 464 (2050)
T 3cmu_A 392 ESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 464 (2050)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcE
Confidence 69999999999998877542 358888887766643 25666654321 12223333333333 2345679
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
||+|.+.
T Consensus 465 IVIDSL~ 471 (2050)
T 3cmu_A 465 IVVDSVA 471 (2050)
T ss_dssp EEESCGG
T ss_pred EEECCHH
Confidence 9999875
No 395
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=70.67 E-value=9.6 Score=35.18 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
.|.|||.+|..++...
T Consensus 117 tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL 132 (237)
T ss_dssp SSTTHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5999999999888765
No 396
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=70.56 E-value=2.1 Score=37.72 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+|||||++.++.....
T Consensus 9 nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 9 PGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp TTSSHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 699999999999987754
No 397
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=70.44 E-value=2.2 Score=39.05 Aligned_cols=97 Identities=12% Similarity=0.065 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc--cchHHHHHHHHHHHHcCCcEEEEEeC
Q 048755 3 GIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE--ESETVRAWRLLEQLKKETKILIILDD 80 (674)
Q Consensus 3 GiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~kr~LlVlDd 80 (674)
|.||||-|...+.+...++ . .++-+...... +.- ..|.+.++..... .... .++.+.. ++-=+|++|+
T Consensus 29 gsGKTT~lL~~~~r~~~~g-~-kvli~kp~~D~--Ryg-~~i~sr~G~~~~a~~i~~~---~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 29 FSGKSTELMRRVRRFQIAQ-Y-KCLVIKYAKDT--RYS-SSFCTHDRNTMEALPACLL---RDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp TSCHHHHHHHHHHHHHTTT-C-CEEEEEETTCC--CC------------CEEEEESSG---GGGHHHH--TTCSEEEESS
T ss_pred CCcHHHHHHHHHHHHHHCC-C-eEEEEeecCCc--cch-HHHHhhcCCeeEEEecCCH---HHHHHHh--ccCCEEEEEc
Confidence 8999999988888877552 2 23333332211 111 3455555443221 1111 1122222 2233999999
Q ss_pred CCCccchhhccCCcCCCCCCeEEEEEeCChh
Q 048755 81 IWGSLDLEAIGIPVADDNGGCKVLLTARSQD 111 (674)
Q Consensus 81 v~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~ 111 (674)
+.-..+..++...+.. .|-.||+|.++-+
T Consensus 99 aQF~~~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 99 GQFFPDIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp GGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred hhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence 8644333333222222 4678999999743
No 398
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.30 E-value=0.73 Score=45.88 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=49.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||+.+.+....... -.+.+. .+.++.... .+.....+...............+...+.. .+=+|++|++
T Consensus 132 tGSGKTTlL~~l~g~~~~~--~~~~i~-t~ed~~e~~--~~~~~~~v~q~~~~~~~~~~~~~La~aL~~-~PdvillDEp 205 (356)
T 3jvv_A 132 TGSGKSTTLAAMLDYLNNT--KYHHIL-TIEDPIEFV--HESKKCLVNQREVHRDTLGFSEALRSALRE-DPDIILVGEM 205 (356)
T ss_dssp TTSCHHHHHHHHHHHHHHH--CCCEEE-EEESSCCSC--CCCSSSEEEEEEBTTTBSCHHHHHHHHTTS-CCSEEEESCC
T ss_pred CCCCHHHHHHHHHhcccCC--CCcEEE-EccCcHHhh--hhccccceeeeeeccccCCHHHHHHHHhhh-CcCEEecCCC
Confidence 6999999999998876643 122222 121211000 000000000000000111122234444444 6778899999
Q ss_pred CCccchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 82 WGSLDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 82 ~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
.+.+.++.+... ...|.-|++|+.....
T Consensus 206 ~d~e~~~~~~~~---~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 206 RDLETIRLALTA---AETGHLVFGTLHTTSA 233 (356)
T ss_dssp CSHHHHHHHHHH---HHTTCEEEEEESCSSH
T ss_pred CCHHHHHHHHHH---HhcCCEEEEEEccChH
Confidence 877655543322 2236568888887654
No 399
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=70.18 E-value=7.7 Score=37.72 Aligned_cols=17 Identities=18% Similarity=0.198 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+||||+|+.+.....
T Consensus 101 sGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 101 VAVGKSTTSRVLKALLS 117 (321)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999987665
No 400
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=70.16 E-value=5.8 Score=36.65 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHHHhhhhcccCceEEEE
Q 048755 1 MGGIGKTTLVKEVGRQAKENNLFEKVISS 29 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~~~F~~~~wv 29 (674)
+.|+||||+++.+++..... .+..+...
T Consensus 35 ~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp STTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 36999999999999988754 35434433
No 401
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=69.71 E-value=6.3 Score=35.74 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=17.2
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+++.+++.....
T Consensus 14 ~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp STTSSHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHc
Confidence 36999999999999988754
No 402
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=69.70 E-value=4.7 Score=40.00 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHhhh--hcccCceEEEEEecCCcCHH
Q 048755 2 GGIGKTTLVKEVGRQAK--ENNLFEKVISSRVSQTPQIK 38 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~--~~~~F~~~~wv~~~~~~~~~ 38 (674)
||+||||+|..++-... ... ..+.-|+.....+..
T Consensus 27 GGvGKTTvaanLA~~lA~~~~G--~rVLLvD~D~~~~l~ 63 (354)
T 2woj_A 27 GGVGKTTSSCSIAIQMALSQPN--KQFLLISTDPAHNLS 63 (354)
T ss_dssp TTSSHHHHHHHHHHHHHHHCTT--SCEEEEECCSSCCHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCC--CeEEEEECCCCCCHH
Confidence 89999999999998887 432 246666665444433
No 403
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=69.63 E-value=2.1 Score=39.95 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||+++.++....
T Consensus 35 ~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 369999999999997653
No 404
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=69.62 E-value=2.2 Score=39.23 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||+|+.++....
T Consensus 13 ~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 369999999999988654
No 405
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=69.27 E-value=2.2 Score=38.12 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.+....
T Consensus 20 ~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 20 KIGTGKSTVCEILKNKY 36 (192)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 46999999999998863
No 406
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=69.14 E-value=2.2 Score=39.95 Aligned_cols=18 Identities=44% Similarity=0.447 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+++.++....
T Consensus 56 ~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp STTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 579999999999998765
No 407
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=69.03 E-value=5.6 Score=35.84 Aligned_cols=18 Identities=39% Similarity=0.518 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
-|+||||+++.+++....
T Consensus 11 dGsGKsTq~~~L~~~L~~ 28 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRLVK 28 (205)
T ss_dssp TTSCHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHC
Confidence 499999999999998863
No 408
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=68.82 E-value=3.3 Score=41.32 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=25.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 36 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (674)
||+||||+|..++...... =..|.-|++....+
T Consensus 11 GGvGKTT~a~nLA~~LA~~--G~rVLlID~D~q~~ 43 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHYFALQ--GKRVLYVDCDPQCN 43 (361)
T ss_dssp CCHHHHHHHHHHHHHHHHT--TCCEEEEECCTTCT
T ss_pred CCCcHHHHHHHHHHHHHhC--CCcEEEEEcCCCCC
Confidence 8999999999999887753 13577788765443
No 409
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=68.77 E-value=2.3 Score=39.68 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||+|+.+++...
T Consensus 37 ~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CTTSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999987653
No 410
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=68.43 E-value=1.9 Score=39.01 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+|||||++.++.....
T Consensus 31 sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 31 PGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp TTSCTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 699999999999987764
No 411
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=68.21 E-value=2.2 Score=38.40 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
..|+||||+++.++...
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999998876
No 412
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=67.82 E-value=5 Score=40.61 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=23.6
Q ss_pred CCCcHHHHHHHHHHhhhhc----ccCceEEEEEecCC
Q 048755 2 GGIGKTTLVKEVGRQAKEN----NLFEKVISSRVSQT 34 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~----~~F~~~~wv~~~~~ 34 (674)
||+||||+|..++...... ..=..|.-|++...
T Consensus 118 GGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 118 GGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp SSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 8999999999999887631 00124777777643
No 413
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=67.68 E-value=2.2 Score=38.56 Aligned_cols=15 Identities=33% Similarity=0.251 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGR 15 (674)
Q Consensus 1 mgGiGKTtla~~~~~ 15 (674)
+.|+||||+++.++.
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999976
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=67.46 E-value=19 Score=37.15 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQ 36 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~ 36 (674)
.|+||||+++.++...... .+.+++...+.+.
T Consensus 302 NGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 302 NGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 6999999999999887643 3444554344443
No 415
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.23 E-value=2.4 Score=38.01 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHHh
Q 048755 1 MGGIGKTTLVKEVGRQ 16 (674)
Q Consensus 1 mgGiGKTtla~~~~~~ 16 (674)
+.|+||||+|+.++..
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 3699999999999885
No 416
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=67.00 E-value=1.8 Score=39.24 Aligned_cols=18 Identities=33% Similarity=0.542 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+||||+|+.+......
T Consensus 9 ~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEHHHHHHHHHHHHHE
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 599999999999988764
No 417
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=66.93 E-value=1.7 Score=40.86 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
.+|+||||+|+.++....
T Consensus 40 ~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CGGGTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 469999999999988764
No 418
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=66.75 E-value=6.3 Score=36.05 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+++.+++....
T Consensus 29 ~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 3699999999999998876
No 419
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=66.50 E-value=3 Score=41.61 Aligned_cols=33 Identities=12% Similarity=0.371 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQI 37 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~ 37 (674)
||+||||+|..++....... ..+.-|+. ...+.
T Consensus 11 GG~GKTt~a~~la~~la~~g--~~vllvd~-~~~~l 43 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQG--KRVLLAGL-AEPVL 43 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTT--CCEEEEEC-SCSHH
T ss_pred CCCcHHHHHHHHHHHHHHCC--CCeEEEeC-CCCCh
Confidence 89999999999998877552 24777777 54443
No 420
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=66.45 E-value=2.5 Score=38.30 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+||||+++.++.....
T Consensus 17 sGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 17 SGVGKGTVREAVFKDPET 34 (208)
T ss_dssp TTSCHHHHHHHHHHSTTC
T ss_pred CCCCHHHHHHHHHhhCCC
Confidence 699999999999987653
No 421
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=66.44 E-value=2.5 Score=38.05 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
.|+|||||++.++...
T Consensus 16 ~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 16 SGAGKTSLVRALVKAL 31 (205)
T ss_dssp TTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 6999999999998864
No 422
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=66.43 E-value=11 Score=45.46 Aligned_cols=74 Identities=23% Similarity=0.238 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcc-----cchHHHHHHHHHHH-HcCCcEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDE-----ESETVRAWRLLEQL-KKETKIL 75 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l-~~~kr~L 75 (674)
.|+||||||.++....... =..++|+++-...++.- ++.++.+.+. .+..+.+-.+.+.+ ..+..-+
T Consensus 1440 ~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~ 1512 (1706)
T 3cmw_A 1440 ESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1512 (1706)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred CCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCE
Confidence 5899999999998776654 24588988877776653 7888877542 12223344444444 4566779
Q ss_pred EEEeCCC
Q 048755 76 IILDDIW 82 (674)
Q Consensus 76 lVlDdv~ 82 (674)
+|+|.|.
T Consensus 1513 vvvDsv~ 1519 (1706)
T 3cmw_A 1513 IVVDSVA 1519 (1706)
T ss_dssp EEESCST
T ss_pred EEEccHH
Confidence 9999884
No 423
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=66.27 E-value=2.5 Score=36.34 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
.|+|||||++.++.-.
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5999999999999876
No 424
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.23 E-value=2.6 Score=37.28 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+|||||++.+......
T Consensus 10 sGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 10 SGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp SSSSHHHHHHHHHHHCGG
T ss_pred CCCCHHHHHHHHHhhCCc
Confidence 599999999999987653
No 425
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=66.13 E-value=2.3 Score=37.73 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+|||||++++..+....
T Consensus 10 SG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 10 SGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp TTSSHHHHHHHHHHHCTTT
T ss_pred CCCCHHHHHHHHHHhCCCC
Confidence 6999999999998876543
No 426
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=66.09 E-value=8.6 Score=37.26 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+|||||++.++.-...
T Consensus 99 sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 99 VAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TTSCHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHhhccc
Confidence 699999999999987664
No 427
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=65.84 E-value=2.9 Score=37.85 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||||++.++....
T Consensus 15 ~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 15 TASGKTTLAQALARTLG 31 (211)
T ss_dssp TTSSHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999998755
No 428
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=65.43 E-value=2.8 Score=39.32 Aligned_cols=18 Identities=11% Similarity=0.130 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||+|+.++....
T Consensus 30 ~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHhh
Confidence 369999999999988654
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=65.29 E-value=3.5 Score=42.08 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHHhh
Q 048755 1 MGGIGKTTLVKEVGRQA 17 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~ 17 (674)
+.|+||||+|+.++.+.
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998765
No 430
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=65.24 E-value=3 Score=37.57 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||+|+.++....
T Consensus 10 ~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 10 PSASGKSSVARRVAAALG 27 (208)
T ss_dssp STTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 369999999999988664
No 431
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=65.15 E-value=2.8 Score=40.49 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHHh
Q 048755 1 MGGIGKTTLVKEVGRQ 16 (674)
Q Consensus 1 mgGiGKTtla~~~~~~ 16 (674)
++|+||||+|+.++..
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999999874
No 432
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=65.08 E-value=2.6 Score=38.05 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
.|+||||+|+.+....
T Consensus 30 ~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 30 TNSGKTTLAKNLQKHL 45 (207)
T ss_dssp TTSSHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhc
Confidence 6999999999998754
No 433
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=65.02 E-value=2.9 Score=39.19 Aligned_cols=18 Identities=33% Similarity=0.458 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||+++.++....
T Consensus 35 ~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 35 PSGAGKGTLCKALAESLN 52 (252)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 469999999999997654
No 434
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=64.80 E-value=3.1 Score=38.35 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||+|+.++....
T Consensus 17 ~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 17 PAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CTTSSHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 379999999999988764
No 435
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=64.79 E-value=4.8 Score=37.03 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+++.+++....
T Consensus 34 ~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CTTSCHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 4699999999999998875
No 436
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=64.03 E-value=3.2 Score=37.29 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
.|+||||+++.+......
T Consensus 31 ~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 31 SRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 699999999999987654
No 437
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=63.85 E-value=2.8 Score=36.60 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSR 30 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~ 30 (674)
.|+|||||++.+..-......-.+.+.++
T Consensus 11 SGsGKSTL~~~L~~~~~~~g~~~G~I~~d 39 (171)
T 2f1r_A 11 SDSGKTTLITRMMPILRERGLRVAVVKRH 39 (171)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEC-
T ss_pred CCCCHHHHHHHHHHHhhhcCCceEEEEEc
Confidence 58999999999998877542223455543
No 438
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=63.55 E-value=3.1 Score=37.86 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGR 15 (674)
Q Consensus 1 mgGiGKTtla~~~~~ 15 (674)
+.|+||||+|+.++.
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999976
No 439
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=63.44 E-value=2.7 Score=37.77 Aligned_cols=18 Identities=11% Similarity=0.016 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
+|+||||+|.++++....
T Consensus 67 PGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 67 ANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp GGGCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 699999999999998753
No 440
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=63.42 E-value=2.3 Score=37.07 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=11.1
Q ss_pred CCCcHHHHHHHHH
Q 048755 2 GGIGKTTLVKEVG 14 (674)
Q Consensus 2 gGiGKTtla~~~~ 14 (674)
.|+|||||++.++
T Consensus 18 nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 18 SGSGKSTFAKKHF 30 (171)
T ss_dssp TTSCHHHHHHHHS
T ss_pred CCCCHHHHHHHHc
Confidence 6999999999644
No 441
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=62.72 E-value=3.3 Score=43.18 Aligned_cols=19 Identities=5% Similarity=-0.092 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+|++++.+...
T Consensus 403 lsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 4799999999999999874
No 442
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=62.32 E-value=3.7 Score=36.48 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+||||+++.++....
T Consensus 10 nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 10 PGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhhcc
Confidence 69999999999998765
No 443
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=62.29 E-value=6.2 Score=34.44 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=16.0
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
.|+||||++..+.......
T Consensus 15 sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 15 SGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcccc
Confidence 6999999999999876543
No 444
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=62.16 E-value=3.5 Score=39.58 Aligned_cols=70 Identities=11% Similarity=0.039 Sum_probs=35.4
Q ss_pred CCCcHHHHHHHHHHhhhhcc-cCceEEEEEecCCcCHHHHHHHHHHHh------CC-CCcccchHHHHHHHHHHHHcC
Q 048755 2 GGIGKTTLVKEVGRQAKENN-LFEKVISSRVSQTPQIKEIQREIAEKL------GL-KIDEESETVRAWRLLEQLKKE 71 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i~~~l------~~-~~~~~~~~~~~~~~~~~l~~~ 71 (674)
.|+||||||+.+........ ....+..|....-.-.......+...- .. ......+...+.+.++.+..+
T Consensus 40 sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~~~l~~l~~g 117 (290)
T 1odf_A 40 QGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNN 117 (290)
T ss_dssp TTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHHHHHHHhhcc
Confidence 69999999999988776431 112344334443222233444444331 10 012223445555666666544
No 445
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=62.06 E-value=6.8 Score=40.81 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHH
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREI 44 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i 44 (674)
.|+|||+|+.++++... -+.++++-+.+. ..+.++.+++
T Consensus 230 ~g~GKT~l~~~ia~~~~----~~v~V~~~iGER~~Ev~e~~~~~ 269 (578)
T 3gqb_A 230 FGSGKSVTQQSLAKWSN----ADVVVYVGSGERGNEMTDVLVEF 269 (578)
T ss_dssp TTSCHHHHHHHHHHHSS----CSEEEEEEEEECHHHHHHHHTTG
T ss_pred CCccHHHHHHHHHhccC----CCEEEEEEecccHHHHHHHHHHH
Confidence 58999999999988743 245777777654 3444555443
No 446
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=62.04 E-value=3.6 Score=37.15 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
+|+||||.|+.++.++.
T Consensus 9 PGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 9 PGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp TTSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHC
Confidence 79999999999998764
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=61.80 E-value=3.5 Score=40.09 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
..|+||||||+.++.+..
T Consensus 13 ptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 13 PTAAGKTDLAMALADALP 30 (323)
T ss_dssp CTTSCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 369999999999998654
No 448
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=61.75 E-value=3.5 Score=37.70 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+|||||+.+++......
T Consensus 47 ~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TTSSHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHhccC
Confidence 7999999999999875433
No 449
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=61.64 E-value=3.6 Score=36.82 Aligned_cols=17 Identities=18% Similarity=0.423 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||||++.+.....
T Consensus 28 SGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 28 SGVGRSHIKNALLSQNP 44 (197)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 69999999999998754
No 450
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=61.51 E-value=5.8 Score=37.60 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=23.4
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||+|..++...... =..|.-|+..
T Consensus 92 gG~GKTt~a~nLA~~lA~~--G~rVLLID~D 120 (271)
T 3bfv_A 92 PGAGKSTIAANLAVAYAQA--GYKTLIVDGD 120 (271)
T ss_dssp TTSSHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHhC--CCeEEEEeCC
Confidence 8999999999999988754 2357778775
No 451
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=61.45 E-value=3.9 Score=40.28 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+++.++......
T Consensus 32 ~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp CTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhCCC
Confidence 57999999999999877644
No 452
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=61.30 E-value=3.6 Score=38.20 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 10 ~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CTTSSHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 369999999999998864
No 453
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=61.29 E-value=5.9 Score=38.77 Aligned_cols=22 Identities=5% Similarity=0.306 Sum_probs=18.4
Q ss_pred ceEecCCCCHHHHHHHHHHHhC
Q 048755 121 QNFVVDVLNEKEAWSLFKKMTG 142 (674)
Q Consensus 121 ~~~~l~~L~~~~~~~lf~~~~~ 142 (674)
..+.++..+.++-.+++.+.+.
T Consensus 178 ~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 178 MKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EEEECCCCCHHHHHHHHHHHHC
T ss_pred EEEEcCCCCHHHHHHHHHhccc
Confidence 3588999999999999988775
No 454
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=60.67 E-value=3.6 Score=38.36 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
.|+||||+|+.++...
T Consensus 34 ~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 34 TASGKSTVCEKIMELL 49 (245)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5999999999998864
No 455
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=60.26 E-value=4.1 Score=36.47 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||||++.+.....
T Consensus 13 sGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 13 SGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCc
Confidence 69999999999988654
No 456
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=60.10 E-value=3.7 Score=40.94 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
+|+|||++|+++++...
T Consensus 60 pGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 60 TGSGKTLLAETLARLLD 76 (363)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999998874
No 457
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=60.09 E-value=3.8 Score=36.99 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||||++.++.-..
T Consensus 29 nGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 29 SAVGKSTVVRCLRERIP 45 (207)
T ss_dssp TTSSHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 59999999999988764
No 458
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=60.02 E-value=7.1 Score=41.88 Aligned_cols=29 Identities=24% Similarity=0.451 Sum_probs=22.3
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
||+||||+|..++....... ..+.-|+..
T Consensus 17 GGvGKTT~a~~lA~~lA~~G--~rVLlvd~D 45 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAEQG--KRVLLVSTD 45 (589)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CcCHHHHHHHHHHHHHHHCC--CcEEEEECC
Confidence 89999999999998877552 246666665
No 459
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=59.23 E-value=3.8 Score=34.82 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
+|+|||||+..+....
T Consensus 12 ~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 12 GGVGKSALTIQLIQNH 27 (166)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHhCc
Confidence 6999999999998753
No 460
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=59.13 E-value=4.4 Score=39.20 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=16.6
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+||||+++.++......
T Consensus 111 nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 111 NGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp TTSSHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 6999999999999887754
No 461
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=58.86 E-value=4.4 Score=39.71 Aligned_cols=17 Identities=35% Similarity=0.411 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+||||||+.++....
T Consensus 16 tgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 16 TASGKTELSIEVAKKFN 32 (340)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHHcC
Confidence 69999999999998765
No 462
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=58.75 E-value=6.8 Score=37.76 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++...... =..|.-|+..-
T Consensus 114 gG~GKTtva~nLA~~lA~~--G~rVLLID~D~ 143 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQS--DQKVLFIDADL 143 (299)
T ss_dssp SSSCHHHHHHHHHHHHHHT--TCCEEEEECCT
T ss_pred CCCChHHHHHHHHHHHHhC--CCcEEEEECCC
Confidence 8999999999999988754 23577777753
No 463
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=58.74 E-value=3.9 Score=40.04 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=15.9
Q ss_pred CCcHHHHHHHHHHhhhhc
Q 048755 3 GIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 3 GiGKTtla~~~~~~~~~~ 20 (674)
|+||||+++.+++.....
T Consensus 17 GaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 17 GIGKSTTGRVMASAASGG 34 (334)
T ss_dssp TSSHHHHHHHHHSGGGCS
T ss_pred CCCHHHHHHHHHHHhccC
Confidence 999999999999987753
No 464
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=58.35 E-value=4.8 Score=36.65 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
.+|+||||.|+.++.++.
T Consensus 37 pPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CTTCCHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHC
Confidence 379999999999998764
No 465
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=58.27 E-value=6.9 Score=36.84 Aligned_cols=99 Identities=16% Similarity=0.113 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCC-cCHHHHHHHHHH--HhCCCCcccchHHHHHHHHHHHHcCCcEEEEE
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQT-PQIKEIQREIAE--KLGLKIDEESETVRAWRLLEQLKKETKILIIL 78 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVl 78 (674)
.|+||||+++.++...... +.+.+++.-... +-.... ..+.. .++. ........+...+.. ++=++++
T Consensus 34 ~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl-----~~~~l~~~la~aL~~-~p~illl 104 (261)
T 2eyu_A 34 TGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGE-----DTKSFADALRAALRE-DPDVIFV 104 (261)
T ss_dssp TTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTT-----TBSCHHHHHHHHHHH-CCSEEEE
T ss_pred CCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCC-----CHHHHHHHHHHHHhh-CCCEEEe
Confidence 5999999999998876543 234443322110 000000 00000 0000 011123445555555 4667888
Q ss_pred eCCCCccchhhccCCcCCCCCCeEEEEEeCChhh
Q 048755 79 DDIWGSLDLEAIGIPVADDNGGCKVLLTARSQDV 112 (674)
Q Consensus 79 Ddv~~~~~~~~l~~~~~~~~~gs~ilvTtr~~~~ 112 (674)
|+..+.+........ ...|.-|++||.+...
T Consensus 105 DEp~D~~~~~~~l~~---~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 105 GEMRDLETVETALRA---AETGHLVFGTLHTNTA 135 (261)
T ss_dssp SCCCSHHHHHHHHHH---HHTTCEEEEEECCSSH
T ss_pred CCCCCHHHHHHHHHH---HccCCEEEEEeCcchH
Confidence 999755443332211 1236668888876543
No 466
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=58.18 E-value=4.3 Score=37.06 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
.|+|||||++.++...
T Consensus 32 sGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 32 SGVGKGTLIKKLLNEF 47 (218)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhhC
Confidence 5999999999998865
No 467
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=58.16 E-value=4.2 Score=38.87 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHH
Q 048755 1 MGGIGKTTLVKEVGR 15 (674)
Q Consensus 1 mgGiGKTtla~~~~~ 15 (674)
+.|+||||+|+.+..
T Consensus 83 ~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 83 ISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999983
No 468
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=57.51 E-value=4.8 Score=38.87 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.6
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
.|+||||+++.++...+..
T Consensus 109 nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 109 NGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHc
Confidence 6999999999999987754
No 469
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=57.35 E-value=12 Score=39.31 Aligned_cols=29 Identities=34% Similarity=0.345 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEec
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVS 32 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~ 32 (674)
.|+|||||++.++....... ..++++..-
T Consensus 290 ~GsGKSTLl~~l~g~~~~~G--~~vi~~~~e 318 (525)
T 1tf7_A 290 TGTGKTLLVSRFVENACANK--ERAILFAYE 318 (525)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHhCC--CCEEEEEEe
Confidence 69999999999998766431 134555443
No 470
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=57.34 E-value=7.6 Score=37.13 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=23.8
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~ 33 (674)
||+||||+|..++....... ..|.-|++.-
T Consensus 102 gG~GKTtva~nLA~~lA~~G--~rVLLID~D~ 131 (286)
T 3la6_A 102 PSIGMTFVCANLAAVISQTN--KRVLLIDCDM 131 (286)
T ss_dssp SSSSHHHHHHHHHHHHHTTT--CCEEEEECCT
T ss_pred CCCcHHHHHHHHHHHHHhCC--CCEEEEeccC
Confidence 89999999999999887542 3577787754
No 471
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=57.29 E-value=4.6 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
+|+|||||+.++......
T Consensus 39 ~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 39 IGSGKTLLIERTIERIGN 56 (221)
T ss_dssp TTSCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhcc
Confidence 799999999999987643
No 472
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=57.23 E-value=4.1 Score=39.82 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||||..++.+..
T Consensus 48 PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp STTSSHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHCC
Confidence 369999999999998654
No 473
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=57.04 E-value=4.4 Score=34.38 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
+|+|||||+..+.+..
T Consensus 10 ~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 10 PNVGKSSLFNRLLKKR 25 (161)
T ss_dssp TTSSHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999998753
No 474
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=56.63 E-value=4.6 Score=36.85 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||||++.++....
T Consensus 25 sGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 25 SGAGKSSLIQALLKTQP 41 (219)
T ss_dssp TTSCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhccCC
Confidence 69999999999998765
No 475
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=56.58 E-value=3.4 Score=43.10 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=15.9
Q ss_pred CCCcHHHHHHHHHHhhhh
Q 048755 2 GGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~ 19 (674)
+|+|||+||+++++....
T Consensus 50 PGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 50 PGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp SSSSHHHHHHHGGGGBSS
T ss_pred chHHHHHHHHHHHHHHhh
Confidence 799999999999987754
No 476
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=56.25 E-value=4.8 Score=35.63 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+|||||.+.+.....
T Consensus 38 ~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 38 SGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp TTSSHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHhcCCC
Confidence 69999999999987543
No 477
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=55.65 E-value=4.7 Score=35.48 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
+|+|||||+..+....
T Consensus 30 ~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 30 GGVGKSALTIQLIQNH 45 (190)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998753
No 478
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=55.48 E-value=6.2 Score=34.82 Aligned_cols=102 Identities=16% Similarity=0.051 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHHhhhhcccCceEEEEEecCCcCHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHHcCCcEEEEEeCC
Q 048755 2 GGIGKTTLVKEVGRQAKENNLFEKVISSRVSQTPQIKEIQREIAEKLGLKIDEESETVRAWRLLEQLKKETKILIILDDI 81 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~kr~LlVlDdv 81 (674)
.|+||||+|..++.+...++ . .++.+.... +.+....++...++....... ......+.+.+. ++.-+|++|++
T Consensus 12 ~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~--d~r~~~~~i~s~~g~~~~~~~-~~~~~~~~~~~~-~~~dvviIDE~ 85 (184)
T 2orw_A 12 MYSGKTTELLSFVEIYKLGK-K-KVAVFKPKI--DSRYHSTMIVSHSGNGVEAHV-IERPEEMRKYIE-EDTRGVFIDEV 85 (184)
T ss_dssp TTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEE-ESSGGGGGGGCC-TTEEEEEECCG
T ss_pred CCCCHHHHHHHHHHHHHHCC-C-eEEEEeecc--ccccCcccEEecCCCceeeEE-ECCHHHHHHHhc-CCCCEEEEECc
Confidence 49999999988887775442 1 233333221 100000011111111111000 000111222222 34569999999
Q ss_pred CCc-cchhhccCCcCCCCCCeEEEEEeCChh
Q 048755 82 WGS-LDLEAIGIPVADDNGGCKVLLTARSQD 111 (674)
Q Consensus 82 ~~~-~~~~~l~~~~~~~~~gs~ilvTtr~~~ 111 (674)
... .+|......+... |..|++|.++.+
T Consensus 86 Q~~~~~~~~~l~~l~~~--~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 86 QFFNPSLFEVVKDLLDR--GIDVFCAGLDLT 114 (184)
T ss_dssp GGSCTTHHHHHHHHHHT--TCEEEEEEESBC
T ss_pred ccCCHHHHHHHHHHHHC--CCCEEEEeeccc
Confidence 765 3343332222222 677888887543
No 479
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=55.44 E-value=8.9 Score=39.60 Aligned_cols=19 Identities=32% Similarity=0.303 Sum_probs=17.0
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
+|+||||++.+++......
T Consensus 54 aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 54 AGTGATTLTKFIIEALIST 72 (459)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 7999999999999988765
No 480
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=55.20 E-value=3.1 Score=42.29 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHHhhhhc----ccCceEEEEEecC
Q 048755 2 GGIGKTTLVKEVGRQAKEN----NLFEKVISSRVSQ 33 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~----~~F~~~~wv~~~~ 33 (674)
||+||||+|..++...... ..=..|.-|++..
T Consensus 121 GGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~ 156 (403)
T 3ez9_A 121 GGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP 156 (403)
T ss_dssp -------CHHHHHHHHHSCGGGGGGCCCEEEEEESS
T ss_pred CCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC
Confidence 8999999999999887631 0012467777653
No 481
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=54.42 E-value=8.7 Score=40.33 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+|++++......
T Consensus 43 lpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 43 LPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhhc
Confidence 57999999999999877543
No 482
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=54.30 E-value=4.3 Score=36.22 Aligned_cols=17 Identities=24% Similarity=0.476 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+||||||.+++.+..
T Consensus 43 sGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 43 SGVGKSETALELVQRGH 59 (205)
T ss_dssp CTTTTHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 69999999999998755
No 483
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=54.29 E-value=6.1 Score=35.49 Aligned_cols=20 Identities=15% Similarity=0.114 Sum_probs=16.9
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+|+.++.+....
T Consensus 14 ~~GsGk~ti~~~la~~lg~~ 33 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHYNIP 33 (201)
T ss_dssp CTTSSHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHhCcC
Confidence 46999999999999987633
No 484
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=53.85 E-value=5.6 Score=35.45 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
.|+|||||.+.+....
T Consensus 14 ~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 14 SGVGKSNLLSRFTRNE 29 (199)
T ss_dssp TTSSHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998753
No 485
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=53.66 E-value=4 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
=|+||||+++.+++.....
T Consensus 13 dGsGKTT~~~~La~~L~~~ 31 (331)
T 1e2k_A 13 HGMGKTTTTQLLVALGSRD 31 (331)
T ss_dssp TTSSHHHHHHHHTC----C
T ss_pred CCCCHHHHHHHHHHHhhhC
Confidence 3999999999998877644
No 486
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=53.51 E-value=6 Score=34.35 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHHh
Q 048755 2 GGIGKTTLVKEVGRQ 16 (674)
Q Consensus 2 gGiGKTtla~~~~~~ 16 (674)
+|+||||+|.++..+
T Consensus 25 SGaGKStlal~L~~r 39 (181)
T 3tqf_A 25 ANIGKSELSLALIDR 39 (181)
T ss_dssp SSSSHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc
Confidence 699999999999885
No 487
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=53.34 E-value=6.2 Score=36.43 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+++.++....
T Consensus 24 ~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp SSCSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHcC
Confidence 369999999999988653
No 488
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=53.33 E-value=4.6 Score=37.08 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+++.+++.....
T Consensus 33 ~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CC---CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhh
Confidence 46999999999999988754
No 489
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=53.18 E-value=8.5 Score=39.91 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.8
Q ss_pred CCCCcHHHHHHHHHHhhhhc
Q 048755 1 MGGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~~ 20 (674)
+.|+||||+|++++......
T Consensus 47 lpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 47 LPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CTTSSHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc
Confidence 47999999999999877633
No 490
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=52.93 E-value=6.2 Score=37.56 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
+|+||||||..++....
T Consensus 39 ~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 39 GGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 69999999999987654
No 491
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=52.75 E-value=6.1 Score=33.71 Aligned_cols=16 Identities=19% Similarity=0.596 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHHhh
Q 048755 2 GGIGKTTLVKEVGRQA 17 (674)
Q Consensus 2 gGiGKTtla~~~~~~~ 17 (674)
+|+|||||+..+.+..
T Consensus 14 ~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKGI 29 (168)
T ss_dssp TTSSHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998753
No 492
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=52.69 E-value=5.3 Score=34.26 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHHh
Q 048755 2 GGIGKTTLVKEVGRQ 16 (674)
Q Consensus 2 gGiGKTtla~~~~~~ 16 (674)
+|+|||||...+...
T Consensus 12 ~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 12 PNVGKSTIFNALTGE 26 (165)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999864
No 493
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=52.65 E-value=5.9 Score=38.24 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+||||||..++....
T Consensus 12 tgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 12 TAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp TTSCHHHHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHhCc
Confidence 69999999999998654
No 494
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.54 E-value=5.9 Score=40.45 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
.+|+||||+|+.++.....
T Consensus 58 ppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHcCC
Confidence 3699999999999998754
No 495
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=52.48 E-value=6 Score=38.08 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHHhhh
Q 048755 2 GGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~ 18 (674)
.|+||||||..++....
T Consensus 19 tgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 19 TASGKTALAIELRKILP 35 (316)
T ss_dssp TTSCHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHhCC
Confidence 69999999999998754
No 496
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=52.46 E-value=6.7 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+++.+++....
T Consensus 13 ~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CSSSSHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHhcc
Confidence 3699999999999998874
No 497
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=52.39 E-value=4.5 Score=35.53 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHHh
Q 048755 2 GGIGKTTLVKEVGRQ 16 (674)
Q Consensus 2 gGiGKTtla~~~~~~ 16 (674)
+|+|||||++.+...
T Consensus 11 ~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 11 TGSGKTTLLQQLMKT 25 (184)
T ss_dssp TTSSHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999873
No 498
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=52.07 E-value=6.6 Score=38.89 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=16.6
Q ss_pred CCCcHHHHHHHHHHhhhhc
Q 048755 2 GGIGKTTLVKEVGRQAKEN 20 (674)
Q Consensus 2 gGiGKTtla~~~~~~~~~~ 20 (674)
.|+||||+++.++...+..
T Consensus 166 nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 166 NGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp TTSCHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHhhcccc
Confidence 6999999999999987754
No 499
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=51.71 E-value=6.4 Score=42.15 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=16.5
Q ss_pred CCCCcHHHHHHHHHHhhhh
Q 048755 1 MGGIGKTTLVKEVGRQAKE 19 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~~ 19 (674)
+.|+||||+|+.++.....
T Consensus 60 lsGSGKSTlAr~La~~L~~ 78 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYLVC 78 (630)
T ss_dssp STTSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 5799999999999998753
No 500
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=51.59 E-value=6.9 Score=35.47 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHHhhh
Q 048755 1 MGGIGKTTLVKEVGRQAK 18 (674)
Q Consensus 1 mgGiGKTtla~~~~~~~~ 18 (674)
+.|+||||+|+.++....
T Consensus 11 ~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 11 PAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CTTSSHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC
Confidence 369999999999987653
Done!