BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048756
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MUC0|PSAA_GINBI Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Ginkgo
biloba GN=psaA PE=3 SV=1
Length = 721
Score = 37.4 bits (85), Expect = 0.088, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 7 SSSTSSPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
++ S+PSS++P + +STSL +L + G+VA +P+ + L H + A
Sbjct: 477 NTHASAPSSTAPGAAASTSLTWGGGDLLAVGGKVALLPIPLGTADFLVHHIHA 529
>sp|P41639|PSAA_PINTH Photosystem I P700 chlorophyll a apoprotein A1 OS=Pinus thunbergii
GN=psaA PE=3 SV=1
Length = 753
Score = 33.9 bits (76), Expect = 0.97, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 7 SSSTSSPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
++ S+P S++P + +STSL ++T+ +VA +P+ + L H + A
Sbjct: 489 NTHASAPGSTAPGATASTSLTWGGGDLVTVGSKVALLPIPLGTADFLVHHIHA 541
>sp|Q85WX3|PSAA_PINKO Photosystem I P700 chlorophyll a apoprotein A1 OS=Pinus koraiensis
GN=psaA PE=3 SV=1
Length = 750
Score = 33.5 bits (75), Expect = 1.0, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 7 SSSTSSPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
++ S+P S++P + +STSL ++T+ +VA +P+ + L H + A
Sbjct: 486 NTHASAPGSTAPGATASTSLTWGGGDLVTVGSKVALLPIPLGTADFLVHHIHA 538
>sp|Q06GR0|PSAA_PIPCE Photosystem I P700 chlorophyll a apoprotein A1 OS=Piper cenocladum
GN=psaA PE=3 SV=1
Length = 750
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS+++P + +STSL A ++ + G+VA +P+ + L H + A
Sbjct: 491 APSATAPGAIASTSLTWGGADLVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|Q9MUK2|PSAA_WELMI Photosystem I P700 chlorophyll a apoprotein A1 OS=Welwitschia
mirabilis GN=psaA PE=3 SV=2
Length = 751
Score = 33.5 bits (75), Expect = 1.2, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 5 FSSSSTSSPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
++ ++PS ++P++ +STSL ++T+ +VA +P+ + L H + A
Sbjct: 485 LQNTHVTAPSFTAPAATASTSLTWGGGDIITVGNKVALLPIPLGTADFLVHHIHA 539
>sp|P06511|PSAA_SPIOL Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea
GN=psaA PE=3 SV=1
Length = 750
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS+++P + +STSL + ++ + G+VA +P+ + L H + A
Sbjct: 491 APSATAPGATASTSLTWGGSDLVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|Q0ZJ20|PSAA_VITVI Photosystem I P700 chlorophyll a apoprotein A1 OS=Vitis vinifera
GN=psaA PE=3 SV=1
Length = 750
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS+++P + +STSL ++ + G+VA +P+ + L H + A
Sbjct: 491 APSATAPGATTSTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|Q0G9W2|PSAA_DAUCA Photosystem I P700 chlorophyll a apoprotein A1 OS=Daucus carota
GN=psaA PE=3 SV=1
Length = 750
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS+++P + +STSL ++ + G+VA +P+ + L H + A
Sbjct: 491 APSATAPGATTSTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|Q7YJX2|PSAA_CALFG Photosystem I P700 chlorophyll a apoprotein A1 OS=Calycanthus
floridus var. glaucus GN=psaA PE=3 SV=1
Length = 750
Score = 32.7 bits (73), Expect = 2.0, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS+++P + +STSL ++ + G+VA +P+ + L H + A
Sbjct: 491 APSATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|P0C355|PSAA_ORYSJ Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza sativa
subsp. japonica GN=psaA PE=3 SV=1
Length = 750
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS ++P + +STSL +++ + G+VA +P+ + L H + A
Sbjct: 491 APSVTAPGATTSTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|P0C354|PSAA_ORYSI Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza sativa
subsp. indica GN=psaA PE=3 SV=1
Length = 750
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS ++P + +STSL +++ + G+VA +P+ + L H + A
Sbjct: 491 APSVTAPGATTSTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|P0C353|PSAA_ORYSA Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza sativa
GN=psaA PE=3 SV=1
Length = 750
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS ++P + +STSL +++ + G+VA +P+ + L H + A
Sbjct: 491 APSVTAPGATTSTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|Q6ENH4|PSAA_ORYNI Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza nivara
GN=psaA PE=3 SV=1
Length = 750
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS ++P + +STSL +++ + G+VA +P+ + L H + A
Sbjct: 491 APSVTAPGATTSTSLTWGGGELVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|A0ZZ35|PSAA_GOSBA Photosystem I P700 chlorophyll a apoprotein A1 OS=Gossypium
barbadense GN=psaA PE=3 SV=1
Length = 750
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 7 SSSTSSPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
++ T +P +++P + +STSL ++ + G+VA +P+ + L H + A
Sbjct: 486 NTHTLAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|Q2L907|PSAA_GOSHI Photosystem I P700 chlorophyll a apoprotein A1 OS=Gossypium
hirsutum GN=psaA PE=3 SV=1
Length = 750
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 7 SSSTSSPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
++ T +P +++P + +STSL ++ + G+VA +P+ + L H + A
Sbjct: 486 NTHTLAPGATAPGATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|Q9MUK0|PSAA_CYCRE Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Cycas
revoluta GN=psaA PE=3 SV=1
Length = 717
Score = 32.3 bits (72), Expect = 2.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+P S++P + +STSL ++ + G+VA +P+ + L H + A
Sbjct: 480 APGSTAPDATASTSLTWGGGDLVAVGGKVALLPIPLGTADFLVHHIHA 527
>sp|Q9MUJ0|PSAA_TORCL Photosystem I P700 chlorophyll a apoprotein A1 (Fragment)
OS=Torreya californica GN=psaA PE=3 SV=1
Length = 719
Score = 32.0 bits (71), Expect = 2.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 29/53 (54%)
Query: 7 SSSTSSPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
++ SSPS ++P + +STSL ++ + +VA +P+ + L H + A
Sbjct: 477 NTHASSPSLTAPDATASTSLTWGGGDLVAVGAKVALLPIPLGTADFLVHHIHA 529
>sp|Q9MUJ5|PSAA_ANGEV Photosystem I P700 chlorophyll a apoprotein A1 OS=Angiopteris
evecta GN=psaA PE=3 SV=2
Length = 750
Score = 32.0 bits (71), Expect = 3.4, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+PS ++P++ +STSL ++ + G+VA +P+ + L H + A
Sbjct: 491 APSLTAPNATASTSLTWGGGDLIAVGGKVALLPIPLGTADFLVHHIHA 538
>sp|A4QK18|PSAA_ARAHI Photosystem I P700 chlorophyll a apoprotein A1 OS=Arabis hirsuta
GN=psaA PE=3 SV=1
Length = 750
Score = 32.0 bits (71), Expect = 3.5, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 12 SPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAA 59
+P ++P +STSL +++T+ G+VA +P+ + L H + A
Sbjct: 491 APGVTAPGETASTSLTWGGGELVTVGGKVALLPIPLGTADFLVHHIHA 538
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.125 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,726,690
Number of Sequences: 539616
Number of extensions: 2565362
Number of successful extensions: 20020
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 18496
Number of HSP's gapped (non-prelim): 1155
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)