Query 048756
Match_columns 218
No_of_seqs 137 out of 304
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 12:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14009 DUF4228: Domain of un 100.0 8.2E-38 1.8E-42 251.8 8.1 107 1-130 1-107 (181)
2 TIGR03793 TOMM_pelo TOMM prope 78.8 2.5 5.3E-05 31.9 3.2 25 94-119 51-75 (77)
3 PF02824 TGS: TGS domain; Int 70.6 7.2 0.00016 27.3 3.7 26 31-56 1-26 (60)
4 cd00178 STI Soybean trypsin in 45.8 14 0.0003 31.3 1.8 19 88-106 6-24 (172)
5 PRK05659 sulfur carrier protei 45.6 21 0.00046 24.7 2.5 23 34-56 3-25 (66)
6 TIGR01683 thiS thiamine biosyn 45.3 30 0.00065 24.2 3.2 23 34-56 1-23 (64)
7 PF00197 Kunitz_legume: Trypsi 45.3 17 0.00036 30.8 2.3 20 88-107 6-25 (176)
8 cd01668 TGS_RelA_SpoT TGS_RelA 44.6 34 0.00073 22.5 3.3 25 32-56 2-26 (60)
9 TIGR01323 nitrile_alph nitrile 44.5 23 0.00049 31.1 3.0 37 86-122 132-174 (185)
10 PF15386 Tantalus: Drosophila 40.1 9.4 0.0002 27.9 -0.0 12 203-214 31-43 (61)
11 PRK00994 F420-dependent methyl 37.4 1E+02 0.0022 28.6 6.1 84 27-130 60-148 (277)
12 cd00565 ThiS ThiaminS ubiquiti 35.5 51 0.0011 23.0 3.2 23 34-56 2-24 (65)
13 PRK07440 hypothetical protein; 35.2 38 0.00082 24.5 2.5 25 32-56 5-29 (70)
14 PRK06944 sulfur carrier protei 34.4 40 0.00088 23.2 2.5 23 34-56 3-25 (65)
15 PRK05863 sulfur carrier protei 33.9 42 0.0009 23.7 2.5 23 34-56 3-25 (65)
16 PRK08053 sulfur carrier protei 32.8 45 0.00098 23.5 2.5 23 34-56 3-25 (66)
17 smart00452 STI Soybean trypsin 31.9 30 0.00065 29.3 1.8 18 88-105 5-22 (172)
18 PF02597 ThiS: ThiS family; I 26.7 12 0.00027 26.1 -1.2 18 39-56 14-31 (77)
19 PF08428 Rib: Rib/alpha-like r 25.8 28 0.00062 24.9 0.5 23 28-50 42-64 (65)
20 COG2895 CysN GTPases - Sulfate 25.7 22 0.00049 34.6 -0.1 68 28-102 265-337 (431)
21 PRK06083 sulfur carrier protei 25.0 68 0.0015 24.3 2.5 25 32-56 19-43 (84)
22 PRK06437 hypothetical protein; 25.0 1.9E+02 0.0041 20.6 4.7 52 34-100 5-61 (67)
23 PRK07696 sulfur carrier protei 24.2 76 0.0016 22.6 2.5 23 34-56 3-26 (67)
24 PF10857 DUF2701: Protein of u 24.0 23 0.0005 26.2 -0.3 16 191-213 36-51 (63)
25 PF01993 MTD: methylene-5,6,7, 23.8 80 0.0017 29.3 3.1 83 28-130 60-147 (276)
26 cd01616 TGS The TGS domain, na 22.4 1.5E+02 0.0033 18.3 3.5 25 32-56 2-26 (60)
27 cd01667 TGS_ThrRS_N TGS _ThrRS 22.2 1.6E+02 0.0035 18.5 3.6 25 32-56 2-26 (61)
28 PF02079 TP1: Nuclear transiti 20.8 47 0.001 23.6 0.8 32 176-207 18-52 (54)
29 PF05833 FbpA: Fibronectin-bin 20.3 67 0.0015 30.2 2.0 57 48-114 115-174 (455)
30 KOG3081 Vesicle coat complex C 20.2 35 0.00076 32.0 0.1 22 195-216 47-68 (299)
No 1
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=100.00 E-value=8.2e-38 Score=251.83 Aligned_cols=107 Identities=45% Similarity=0.671 Sum_probs=99.3
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCcCCCCCceEEEccCCcEEEecCCccHHHHHHHHHhhhcCcCCCCCeEEEccCCCCCC
Q 048756 1 MGGCFSSSSTSSPSSSSPSSPSSTSLKHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAAQADQEEAPSWFLCSSDSLLFD 80 (218)
Q Consensus 1 MGnCvS~~~~~~~~~~~~~~~~~~~~~~~taKVV~~DG~v~ef~~PvtAseVL~~~~~~~~~~~~~P~~FVC~SD~L~~~ 80 (218)
||||+||... ......++|||++||+|+||+.||+|+|||.+| |+||||+++.+.++
T Consensus 1 MGn~~~~~~~-------------~~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~----------P~h~v~~~~~~~~~ 57 (181)
T PF14009_consen 1 MGNCVSCCLA-------------SSSSAATVKVVHPDGKVEEFKRPVTAAEVMLEN----------PGHFVCDSDSFRFG 57 (181)
T ss_pred CCCccccccc-------------ccCCCceEEEEcCCCcEEEeCCCcCHHHHHHHC----------CCCEEeccccccCC
Confidence 9999999753 123568999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCccccccCCeEEEecCCccCCCCCHHHHHHHHHHHHHHHHhcc
Q 048756 81 DYIPALDLEDELEADQIYFVLPTSKLQYKLSASDMAALAVKASLALQNAS 130 (218)
Q Consensus 81 ~~i~aL~~DeeLqpGqiYFlLP~s~l~~~LSa~dmAaLAvkAssAL~~~~ 130 (218)
.++++|++||+|++||||||||+++++..+++.+|++++.+++.+.....
T Consensus 58 ~~~~~l~~d~~L~~G~~Y~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (181)
T PF14009_consen 58 RRIKPLPPDEELQPGQIYFLLPMSRLQSVLSASDMASLASSASSASSSSS 107 (181)
T ss_pred CcccCCCccCeecCCCEEEEEEccccCcccccchhcccccchhhcccccc
Confidence 99999999999999999999999999999999999999999988887754
No 2
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=78.82 E-value=2.5 Score=31.90 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=22.5
Q ss_pred cCCeEEEecCCccCCCCCHHHHHHHH
Q 048756 94 ADQIYFVLPTSKLQYKLSASDMAALA 119 (218)
Q Consensus 94 pGqiYFlLP~s~l~~~LSa~dmAaLA 119 (218)
|...|+|||...-. .||.++|+++|
T Consensus 51 ~~~~~lVlP~~P~~-~lse~~L~~va 75 (77)
T TIGR03793 51 PTVLYLVLPVNPDI-ELTDEQLDAVA 75 (77)
T ss_pred CCeEEEEecCCCCC-CCCHHHHHHhh
Confidence 68999999998887 99999999875
No 3
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=70.64 E-value=7.2 Score=27.34 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=23.4
Q ss_pred eEEEccCCcEEEecCCccHHHHHHHH
Q 048756 31 AKVLTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 31 aKVV~~DG~v~ef~~PvtAseVL~~~ 56 (218)
++|..+||++.+|+..+|+.|+...-
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I 26 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSI 26 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHH
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHH
Confidence 57889999999999999999998775
No 4
>cd00178 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors. Inhibit proteases by binding with high affinity to their active sites. Trefoil fold, common to interleukins and fibroblast growth factors.
Probab=45.80 E-value=14 Score=31.30 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.5
Q ss_pred CccccccCCeEEEecCCcc
Q 048756 88 LEDELEADQIYFVLPTSKL 106 (218)
Q Consensus 88 ~DeeLqpGqiYFlLP~s~l 106 (218)
.+++|++|.-||+||..+-
T Consensus 6 ~G~~l~~g~~YyI~p~~~g 24 (172)
T cd00178 6 DGNPLRNGGRYYILPAIRG 24 (172)
T ss_pred CCCCCcCCCeEEEEEceeC
Confidence 4688999999999999864
No 5
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=45.61 E-value=21 Score=24.74 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=21.3
Q ss_pred EccCCcEEEecCCccHHHHHHHH
Q 048756 34 LTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 34 V~~DG~v~ef~~PvtAseVL~~~ 56 (218)
|..||+..++..+.++.|+|...
T Consensus 3 i~vNG~~~~~~~~~tl~~lL~~l 25 (66)
T PRK05659 3 IQLNGEPRELPDGESVAALLARE 25 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHhc
Confidence 67899999999999999999876
No 6
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=45.35 E-value=30 Score=24.15 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.9
Q ss_pred EccCCcEEEecCCccHHHHHHHH
Q 048756 34 LTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 34 V~~DG~v~ef~~PvtAseVL~~~ 56 (218)
|..||+..++..+.++.|+|...
T Consensus 1 i~iNg~~~~~~~~~tv~~ll~~l 23 (64)
T TIGR01683 1 ITVNGEPVEVEDGLTLAALLESL 23 (64)
T ss_pred CEECCeEEEcCCCCcHHHHHHHc
Confidence 46799999999999999999987
No 7
>PF00197 Kunitz_legume: Trypsin and protease inhibitor; InterPro: IPR002160 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The Kunitz-type soybean trypsin inhibitor (STI) family consists mainly of proteinase inhibitors from Leguminosae seeds []. They belong to MEROPS inhibitor family I3, clan IC. They exhibit proteinase inhibitory activity against serine proteinases; trypsin (MEROPS peptidase family S1, IPR001254 from INTERPRO) and subtilisin (MEROPS peptidase family S8, IPR000209 from INTERPRO), thiol proteinases (MEROPS peptidase family C1, IPR000668 from INTERPRO) and aspartic proteinases (MEROPS peptidase family A1, IPR001461 from INTERPRO) []. Inhibitors from cereals are active against subtilisin and endogenous alpha-amylases, while some also inhibit tissue plasminogen activator. The inhibitors are usually specific for either trypsin or chymotrypsin, and some are effective against both. They are thought to protect the seeds against consumption by animal predators, while at the same time existing as seed storage proteins themselves - all the actively inhibitory members contain 2 disulphide bridges. The existence of a member with no inhibitory activity, winged bean albumin 1, suggests that the inhibitors may have evolved from seed storage proteins. Proteins from the Kunitz family contain from 170 to 200 amino acid residues and one or two intra-chain disulphide bonds. The best conserved region is found in their N-terminal section. The crystal structures of soybean trypsin inhibitor (STI), trypsin inhibitor DE-3 from the Kaffir tree Erythrina caffra (ETI) [] and the bifunctional proteinase K/alpha-amylase inhibitor from wheat (PK13) have been solved, showing them to share the same 12-stranded beta-sheet structure as those of interleukin-1 and heparin-binding growth factors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Despite the structural similarity, STI shows no interleukin-1 bioactivity, presumably as a result of their primary sequence disparities. The active inhibitory site containing the scissile bond is located in the loop between beta-strands 4 and 5 in STI and ETI. The STIs belong to a superfamily that also contains the interleukin-1 proteins, heparin binding growth factors (HBGF) and histactophilin, all of which have very similar structures, but share no sequence similarity with the STI family.; GO: 0004866 endopeptidase inhibitor activity; PDB: 3TC2_B 3S8J_A 3S8K_A 1TIE_A 2GZB_A 3E8L_C 2IWT_B 3BX1_C 1AVA_D 3IIR_A ....
Probab=45.33 E-value=17 Score=30.76 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=15.9
Q ss_pred CccccccCCeEEEecCCccC
Q 048756 88 LEDELEADQIYFVLPTSKLQ 107 (218)
Q Consensus 88 ~DeeLqpGqiYFlLP~s~l~ 107 (218)
.+++|++|.-||+||..+-.
T Consensus 6 ~G~~l~~g~~YyI~p~~~~~ 25 (176)
T PF00197_consen 6 DGNPLRNGGEYYILPAIRGA 25 (176)
T ss_dssp TSCB-BTTSEEEEEESSTGC
T ss_pred CCCCCcCCCCEEEEeCccCC
Confidence 46789999999999987753
No 8
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=44.63 E-value=34 Score=22.51 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=21.8
Q ss_pred EEEccCCcEEEecCCccHHHHHHHH
Q 048756 32 KVLTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 32 KVV~~DG~v~ef~~PvtAseVL~~~ 56 (218)
-|..+||+..+|..++++.|++...
T Consensus 2 ~~~~~~g~~~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 2 YVFTPKGEIIELPAGATVLDFAYAI 26 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHH
Confidence 4677899999999999999998765
No 9
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=44.47 E-value=23 Score=31.15 Aligned_cols=37 Identities=24% Similarity=0.410 Sum_probs=27.8
Q ss_pred CCCccccc-----cCCeEEEecCCccC-CCCCHHHHHHHHHHH
Q 048756 86 LDLEDELE-----ADQIYFVLPTSKLQ-YKLSASDMAALAVKA 122 (218)
Q Consensus 86 L~~DeeLq-----pGqiYFlLP~s~l~-~~LSa~dmAaLAvkA 122 (218)
|++|-+.+ +..+|||||+..-. ..||.+++++|.-+-
T Consensus 132 lP~~veVrV~Dstae~rYlVLP~RP~gte~lsEeqLa~lVtrd 174 (185)
T TIGR01323 132 LPSDVEIRVWDSSAESRYLVLPQRPAGTEHMSEEQLQQLVTRD 174 (185)
T ss_pred CCCCeEEEEEeCCCCeEEEEEecCCCCCCCCCHHHHHHhhccc
Confidence 45555443 67899999998765 459999999987653
No 10
>PF15386 Tantalus: Drosophila Tantalus-like
Probab=40.13 E-value=9.4 Score=27.87 Aligned_cols=12 Identities=42% Similarity=0.498 Sum_probs=9.6
Q ss_pred cccee-eeeeeec
Q 048756 203 RSFRL-RLATIFE 214 (218)
Q Consensus 203 rs~~~-~l~ti~e 214 (218)
.++-. .|+||||
T Consensus 31 k~~~~~~LETIfE 43 (61)
T PF15386_consen 31 KKPTPKNLETIFE 43 (61)
T ss_pred CCCCcCCcchhhc
Confidence 55666 8999998
No 11
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=37.35 E-value=1e+02 Score=28.65 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=56.5
Q ss_pred CCCceEEEccCCcEEEecCCccHHHHHHHHHhhhcCcCCCCCeEEEccCCCCCCCCCCCCCCcccc-ccCCeEEEecCCc
Q 048756 27 KHSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAAQADQEEAPSWFLCSSDSLLFDDYIPALDLEDEL-EADQIYFVLPTSK 105 (218)
Q Consensus 27 ~~~taKVV~~DG~v~ef~~PvtAseVL~~~~~~~~~~~~~P~~FVC~SD~L~~~~~i~aL~~DeeL-qpGqiYFlLP~s~ 105 (218)
.+..+-||.+|+. ...|..|.|+|.+.. =|--+|.+. |....+++| +-|.=|+++|.+.
T Consensus 60 ~pDf~i~isPN~a---~PGP~~ARE~l~~~~--------iP~IvI~D~---------p~~K~~d~l~~~g~GYIivk~Dp 119 (277)
T PRK00994 60 KPDFVIVISPNPA---APGPKKAREILKAAG--------IPCIVIGDA---------PGKKVKDAMEEQGLGYIIVKADP 119 (277)
T ss_pred CCCEEEEECCCCC---CCCchHHHHHHHhcC--------CCEEEEcCC---------CccchHHHHHhcCCcEEEEecCc
Confidence 4567778888876 478999999999761 043333222 234344555 4577799999876
Q ss_pred c----CCCCCHHHHHHHHHHHHHHHHhcc
Q 048756 106 L----QYKLSASDMAALAVKASLALQNAS 130 (218)
Q Consensus 106 l----~~~LSa~dmAaLAvkAssAL~~~~ 130 (218)
. +.-|.+.|||.+..-+-..|..++
T Consensus 120 MIGArREFLDP~EMa~fNaD~~kVLa~tG 148 (277)
T PRK00994 120 MIGARREFLDPVEMALFNADVLKVLAGTG 148 (277)
T ss_pred cccchhhccCHHHHHHhhhhHHHHHHhhh
Confidence 4 233999999998877666665543
No 12
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=35.52 E-value=51 Score=22.96 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.1
Q ss_pred EccCCcEEEecCCccHHHHHHHH
Q 048756 34 LTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 34 V~~DG~v~ef~~PvtAseVL~~~ 56 (218)
|..||+..++..+.++.++|...
T Consensus 2 i~iNg~~~~~~~~~tv~~ll~~l 24 (65)
T cd00565 2 ITVNGEPREVEEGATLAELLEEL 24 (65)
T ss_pred EEECCeEEEcCCCCCHHHHHHHc
Confidence 56799999999999999999887
No 13
>PRK07440 hypothetical protein; Provisional
Probab=35.24 E-value=38 Score=24.51 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.4
Q ss_pred EEEccCCcEEEecCCccHHHHHHHH
Q 048756 32 KVLTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 32 KVV~~DG~v~ef~~PvtAseVL~~~ 56 (218)
.-|..||+..++..+.++.|+|.+.
T Consensus 5 m~i~vNG~~~~~~~~~tl~~lL~~l 29 (70)
T PRK07440 5 ITLQVNGETRTCSSGTSLPDLLQQL 29 (70)
T ss_pred eEEEECCEEEEcCCCCCHHHHHHHc
Confidence 4577899999999999999999876
No 14
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=34.42 E-value=40 Score=23.18 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=21.1
Q ss_pred EccCCcEEEecCCccHHHHHHHH
Q 048756 34 LTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 34 V~~DG~v~ef~~PvtAseVL~~~ 56 (218)
|..||+..++....+++|++...
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~l 25 (65)
T PRK06944 3 IQLNQQTLSLPDGATVADALAAY 25 (65)
T ss_pred EEECCEEEECCCCCcHHHHHHhh
Confidence 67899999999999999999877
No 15
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=33.94 E-value=42 Score=23.70 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=21.3
Q ss_pred EccCCcEEEecCCccHHHHHHHH
Q 048756 34 LTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 34 V~~DG~v~ef~~PvtAseVL~~~ 56 (218)
|..||+..++..+.++.|+|.+.
T Consensus 3 i~vNG~~~~~~~~~tl~~ll~~l 25 (65)
T PRK05863 3 VVVNEEQVEVDEQTTVAALLDSL 25 (65)
T ss_pred EEECCEEEEcCCCCcHHHHHHHc
Confidence 67899999999999999999987
No 16
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=32.75 E-value=45 Score=23.48 Aligned_cols=23 Identities=9% Similarity=0.163 Sum_probs=21.1
Q ss_pred EccCCcEEEecCCccHHHHHHHH
Q 048756 34 LTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 34 V~~DG~v~ef~~PvtAseVL~~~ 56 (218)
|..||+..++..++++.|+|...
T Consensus 3 i~vNg~~~~~~~~~tl~~ll~~l 25 (66)
T PRK08053 3 ILFNDQPMQCAAGQTVHELLEQL 25 (66)
T ss_pred EEECCeEEEcCCCCCHHHHHHHc
Confidence 67899999999999999999876
No 17
>smart00452 STI Soybean trypsin inhibitor (Kunitz) family of protease inhibitors.
Probab=31.87 E-value=30 Score=29.30 Aligned_cols=18 Identities=22% Similarity=0.530 Sum_probs=15.9
Q ss_pred CccccccCCeEEEecCCc
Q 048756 88 LEDELEADQIYFVLPTSK 105 (218)
Q Consensus 88 ~DeeLqpGqiYFlLP~s~ 105 (218)
.+++|++|.-||+||..+
T Consensus 5 ~G~~l~~G~~YyI~p~~~ 22 (172)
T smart00452 5 DGNPLRNGGTYYILPAIR 22 (172)
T ss_pred CCCCCcCCCcEEEEEccc
Confidence 467899999999999975
No 18
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=26.66 E-value=12 Score=26.10 Aligned_cols=18 Identities=22% Similarity=0.099 Sum_probs=13.7
Q ss_pred cEEEecCCccHHHHHHHH
Q 048756 39 EVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 39 ~v~ef~~PvtAseVL~~~ 56 (218)
...++..+.|+.|++...
T Consensus 14 ~~~~~~~~~tv~~ll~~l 31 (77)
T PF02597_consen 14 EEIEVPEGSTVRDLLEAL 31 (77)
T ss_dssp EEEEESSTSBHHHHHHHH
T ss_pred eEEecCCCCcHHHHHHHH
Confidence 344556699999999886
No 19
>PF08428 Rib: Rib/alpha-like repeat; InterPro: IPR012706 This entry represents a region of about 79 amino acids found tandemly repeated up to fourteen times within the proteins that contain it. The repeats lack cysteines and are highly conserved, even at the DNA level, within and between proteins []. Proteins containing these repeats include the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis (Streptococcus faecalis), and related proteins of Lactobacillus. Most members of this protein family also have the cell wall anchor motif, LPXTG, shared by many staphyloccal and streptococcal surface antigens. These repeats are thought to define protective epitopes and may play a role in generating phenotypic and genotypic variation [].
Probab=25.77 E-value=28 Score=24.92 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.0
Q ss_pred CCceEEEccCCcEEEecCCccHH
Q 048756 28 HSTAKVLTLKGEVAEYKVPVIVS 50 (218)
Q Consensus 28 ~~taKVV~~DG~v~ef~~PvtAs 50 (218)
...++|.++||+..+...||+|.
T Consensus 42 ~~~V~VtypDgS~~~V~v~V~V~ 64 (65)
T PF08428_consen 42 TGKVKVTYPDGSTDEVPVPVTVT 64 (65)
T ss_pred EEEEEEEcCCCCEEEEEeEEEEe
Confidence 56799999999999999988764
No 20
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=25.67 E-value=22 Score=34.63 Aligned_cols=68 Identities=21% Similarity=0.265 Sum_probs=45.6
Q ss_pred CCceEEEccCCcEEEecCCccHHHHHHHHHhhhcCcCCCCCeEEEccCCCC-----CCCCCCCCCCccccccCCeEEEec
Q 048756 28 HSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAAQADQEEAPSWFLCSSDSLL-----FDDYIPALDLEDELEADQIYFVLP 102 (218)
Q Consensus 28 ~~taKVV~~DG~v~ef~~PvtAseVL~~~~~~~~~~~~~P~~FVC~SD~L~-----~~~~i~aL~~DeeLqpGqiYFlLP 102 (218)
....+|+.+||.+.+-...-.|--+|.++.+-+ -|-++|+.|.-. |...+--| .|+.|+||+-|.|==
T Consensus 265 s~V~~Ivt~dg~~~~A~aG~aVtl~L~deidis------RGd~i~~~~~~~~~~~~f~A~vvWm-~~~pl~pGr~Y~lK~ 337 (431)
T COG2895 265 SRVKRIVTFDGELAQASAGEAVTLVLADEIDIS------RGDLIVAADAPPAVADAFDADVVWM-DEEPLLPGRSYDLKI 337 (431)
T ss_pred eeEEEEeccCCchhhccCCceEEEEEcceeecc------cCcEEEccCCCcchhhhcceeEEEe-cCCCCCCCceEEEEe
Confidence 456788899999998887766666666654332 577888877622 22222212 578899999998753
No 21
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=25.03 E-value=68 Score=24.32 Aligned_cols=25 Identities=8% Similarity=0.283 Sum_probs=22.5
Q ss_pred EEEccCCcEEEecCCccHHHHHHHH
Q 048756 32 KVLTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 32 KVV~~DG~v~ef~~PvtAseVL~~~ 56 (218)
.-|..||+..+++.+.++.|+|...
T Consensus 19 m~I~VNG~~~~~~~~~tl~~LL~~l 43 (84)
T PRK06083 19 ITISINDQSIQVDISSSLAQIIAQL 43 (84)
T ss_pred EEEEECCeEEEcCCCCcHHHHHHHc
Confidence 3478999999999999999999887
No 22
>PRK06437 hypothetical protein; Provisional
Probab=25.00 E-value=1.9e+02 Score=20.61 Aligned_cols=52 Identities=8% Similarity=0.238 Sum_probs=31.6
Q ss_pred EccCC---cEEEecCCccHHHHHHHHHhhhcCcCCCCC-eEEEccCCCCCCCCCCCCCCccccccC-CeEEE
Q 048756 34 LTLKG---EVAEYKVPVIVSQVLAHQLAAQADQEEAPS-WFLCSSDSLLFDDYIPALDLEDELEAD-QIYFV 100 (218)
Q Consensus 34 V~~DG---~v~ef~~PvtAseVL~~~~~~~~~~~~~P~-~FVC~SD~L~~~~~i~aL~~DeeLqpG-qiYFl 100 (218)
|..|| ...++..+.+++|+|.+..-. +. ..|..- +. .++.|..|+.| .|-++
T Consensus 5 ~~v~g~~~~~~~i~~~~tv~dLL~~Lgi~-------~~~vaV~vN-----g~---iv~~~~~L~dgD~Veiv 61 (67)
T PRK06437 5 IRVKGHINKTIEIDHELTVNDIIKDLGLD-------EEEYVVIVN-----GS---PVLEDHNVKKEDDVLIL 61 (67)
T ss_pred EEecCCcceEEEcCCCCcHHHHHHHcCCC-------CccEEEEEC-----CE---ECCCceEcCCCCEEEEE
Confidence 45568 557788889999999987211 33 333211 11 23478888887 44443
No 23
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=24.24 E-value=76 Score=22.63 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred EccCCcEEEecCC-ccHHHHHHHH
Q 048756 34 LTLKGEVAEYKVP-VIVSQVLAHQ 56 (218)
Q Consensus 34 V~~DG~v~ef~~P-vtAseVL~~~ 56 (218)
|..||+-.++..+ .++.|+|.+.
T Consensus 3 I~vNG~~~~~~~~~~tv~~lL~~l 26 (67)
T PRK07696 3 LKINGNQIEVPESVKTVAELLTHL 26 (67)
T ss_pred EEECCEEEEcCCCcccHHHHHHHc
Confidence 6789999999987 6899999876
No 24
>PF10857 DUF2701: Protein of unknown function (DUF2701); InterPro: IPR022586 This entry represents viral proteins with unknown function. The entry contains ORF C51 from Swinepox virus (strain Kasza).
Probab=24.05 E-value=23 Score=26.17 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=13.3
Q ss_pred eeehhhccccccccceeeeeeee
Q 048756 191 QRYTSRRTKLAVRSFRLRLATIF 213 (218)
Q Consensus 191 ~r~~~~~~~~~~rs~~~~l~ti~ 213 (218)
-..|+| |||+ +|+++|
T Consensus 36 in~TtR------RsF~-~Ld~vY 51 (63)
T PF10857_consen 36 INATTR------RSFT-QLDNVY 51 (63)
T ss_pred HHHHhH------hhHH-HhcCEE
Confidence 345888 9999 999998
No 25
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=23.78 E-value=80 Score=29.30 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=48.9
Q ss_pred CCceEEEccCCcEEEecCCccHHHHHHHHHhhhcCcCCCCCeEEEccCCCCCCCCCCCCCCcccc-ccCCeEEEecCCcc
Q 048756 28 HSTAKVLTLKGEVAEYKVPVIVSQVLAHQLAAQADQEEAPSWFLCSSDSLLFDDYIPALDLEDEL-EADQIYFVLPTSKL 106 (218)
Q Consensus 28 ~~taKVV~~DG~v~ef~~PvtAseVL~~~~~~~~~~~~~P~~FVC~SD~L~~~~~i~aL~~DeeL-qpGqiYFlLP~s~l 106 (218)
+..+-||.+|+. ...|..+.|++.+.. =|--+|.+. |.....++| +-|.=|+++|.+..
T Consensus 60 pdf~I~isPN~~---~PGP~~ARE~l~~~~--------iP~IvI~D~---------p~~k~kd~l~~~g~GYIivk~DpM 119 (276)
T PF01993_consen 60 PDFVIVISPNAA---APGPTKAREMLSAKG--------IPCIVISDA---------PTKKAKDALEEEGFGYIIVKADPM 119 (276)
T ss_dssp -SEEEEE-S-TT---SHHHHHHHHHHHHSS--------S-EEEEEEG---------GGGGGHHHHHHTT-EEEEETTS--
T ss_pred CCEEEEECCCCC---CCCcHHHHHHHHhCC--------CCEEEEcCC---------CchhhHHHHHhcCCcEEEEecCcc
Confidence 456777778875 367889999996651 054444332 223333444 45777999998865
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHhcc
Q 048756 107 ----QYKLSASDMAALAVKASLALQNAS 130 (218)
Q Consensus 107 ----~~~LSa~dmAaLAvkAssAL~~~~ 130 (218)
+.-|.+.|||.+..-+-..|..++
T Consensus 120 IGArREFLDP~EMa~fNaD~~kVLa~tG 147 (276)
T PF01993_consen 120 IGARREFLDPVEMALFNADVLKVLAITG 147 (276)
T ss_dssp ----TTT--HHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccCHHHHHHhhhhHHHHHHhhh
Confidence 233999999999887777776654
No 26
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=22.36 E-value=1.5e+02 Score=18.33 Aligned_cols=25 Identities=12% Similarity=0.081 Sum_probs=21.4
Q ss_pred EEEccCCcEEEecCCccHHHHHHHH
Q 048756 32 KVLTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 32 KVV~~DG~v~ef~~PvtAseVL~~~ 56 (218)
.++..||...++....++.+++.+.
T Consensus 2 ~~~~~~~~~~~~~~g~t~~~~~~~~ 26 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKI 26 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHH
Confidence 4677889999999999999988776
No 27
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=22.18 E-value=1.6e+02 Score=18.45 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.5
Q ss_pred EEEccCCcEEEecCCccHHHHHHHH
Q 048756 32 KVLTLKGEVAEYKVPVIVSQVLAHQ 56 (218)
Q Consensus 32 KVV~~DG~v~ef~~PvtAseVL~~~ 56 (218)
++...||...++..+++..+++.+.
T Consensus 2 ~i~~~~~~~~~~~~~~t~~~~~~~~ 26 (61)
T cd01667 2 KITLPDGSVKEFPKGTTPLDIAKSI 26 (61)
T ss_pred EEEcCCCCEEEeCCCCCHHHHHHHH
Confidence 5667789999999999999988876
No 28
>PF02079 TP1: Nuclear transition protein 1; InterPro: IPR001319 Nuclear transition protein 1 (TP1) is one of the spermatid-specific proteins []. TP1 is a basic protein well conserved in mammalian species. In mammals, the second stage of spermatogenesis is characterised by the conversion of nucleosomal chromatin to the compact, non-nucleosomal and transcriptionally inactive form found in the sperm nucleus. This condensation is associated with a double-protein transition. The first transition corresponds to the replacement of histones by several spermatid-specific proteins (also called transition proteins) which are themselves replaced by protamines during the second transition.; GO: 0003677 DNA binding, 0007283 spermatogenesis, 0000786 nucleosome, 0005634 nucleus
Probab=20.82 E-value=47 Score=23.59 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=23.2
Q ss_pred ccccCcccccccccceee---hhhcccccccccee
Q 048756 176 RANFGISRSASVRKFQRY---TSRRTKLAVRSFRL 207 (218)
Q Consensus 176 ~~~~g~~~~~~~~~~~r~---~~~~~~~~~rs~~~ 207 (218)
.++.|+.|.|+-||.++- +..|-.-|-|.||-
T Consensus 18 ~phkgvkrggskrkyrk~~lksrkr~ddanrn~rs 52 (54)
T PF02079_consen 18 SPHKGVKRGGSKRKYRKSSLKSRKRGDDANRNYRS 52 (54)
T ss_pred CCccccccccccchhhhccccccccccccccchhc
Confidence 457999999999998874 23455566677763
No 29
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO. Fibronectin binding is considered to be an important virulence factor in streptococcal infections. Fibronectin is a dimeric glycoprotein that is present in a soluble form in plasma and extracellular fluids; it is also present in a fibrillar form on cell surfaces. Both the soluble and cellular forms of fibronectin may be incorporated into the extracellular tissue matrix. While fibronectin has critical roles in eukaryotic cellular processes, such as adhesion, migration and differentiation, it is also a substrate for the attachment of bacteria. The binding of pathogenic Streptococcus pyogenes and Staphylococcus aureus to epithelial cells via fibronectin facilitates their internalisation and systemic spread within the host [].; PDB: 3DOA_A 2ZBK_F 2HKJ_A 1Z5B_A 1Z5C_B 1MX0_F 1Z5A_A 1MU5_A 1Z59_A.
Probab=20.29 E-value=67 Score=30.24 Aligned_cols=57 Identities=12% Similarity=0.255 Sum_probs=22.9
Q ss_pred cHHHHHHHHHhhhcCcCCCCCeEEEccCCCCCCC--CCCC-CCCccccccCCeEEEecCCccCCCCCHHH
Q 048756 48 IVSQVLAHQLAAQADQEEAPSWFLCSSDSLLFDD--YIPA-LDLEDELEADQIYFVLPTSKLQYKLSASD 114 (218)
Q Consensus 48 tAseVL~~~~~~~~~~~~~P~~FVC~SD~L~~~~--~i~a-L~~DeeLqpGqiYFlLP~s~l~~~LSa~d 114 (218)
-+-|+|..+ .+-+||+.+.--++. ++.. ...|-++.||..|..-|......+++.++
T Consensus 115 Li~El~g~~----------~NiiL~d~~~~Il~a~~~~~~~~~~~R~i~~G~~Y~~Pp~~~~~~p~~~~~ 174 (455)
T PF05833_consen 115 LIIELMGRH----------SNIILTDEDGKILDALRRVSFSQSRDREILPGEPYIPPPPQDKLDPLDLEE 174 (455)
T ss_dssp EEEE--GGG-----------EEEEEETT-BEEEESS-B---------BSTTSB---------B-CCC--H
T ss_pred EEEEEcCCc----------ccEEEEcCCCeEEeehhhcCcccccceeeccCccccccccccCCCcccchh
Confidence 477899998 789999887632222 2221 34478999999999777755555655444
No 30
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=35 Score=31.97 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.2
Q ss_pred hhccccccccceeeeeeeeccc
Q 048756 195 SRRTKLAVRSFRLRLATIFEGI 216 (218)
Q Consensus 195 ~~~~~~~~rs~~~~l~ti~e~~ 216 (218)
.-|++||.++++..+.+|-||.
T Consensus 47 ~~raylAlg~~~~~~~eI~~~~ 68 (299)
T KOG3081|consen 47 MYRAYLALGQYQIVISEIKEGK 68 (299)
T ss_pred HHHHHHHccccccccccccccc
Confidence 4599999999999999999986
Done!