BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048757
(864 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ AGGV LV L S E VQ++AARALAN +A G + A V + G +E LV+L
Sbjct: 40 IVDAGGVEVLVKLLTSTDSE-VQKEAARALAN-IASGPDEAIKAIV--DAGGVEVLVKLL 95
Query: 540 FSKHEGVRQEAAGALWNL-SFDDRNRXXXXXXXXXXXXXXXVRSCSSSSQGLQERAAGAL 598
S V++EAA AL N+ S D V+ +S+ +Q+ AA AL
Sbjct: 96 TSTDSEVQKEAARALANIASGPDE---AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 152
Query: 599 WGLSLSEANSI-AIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNAL-CIVEGG 656
++ +I AI GGV L+ L S +V + AA AL N+A P +A+ IV+ G
Sbjct: 153 ANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAG 212
Query: 657 GVQALIHLCSSSLSKMAR 674
GV+ L L +S+ S++ +
Sbjct: 213 GVEVLQKLLTSTDSEVQK 230
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 10/209 (4%)
Query: 352 EAILRHGGVRLLLDLARSPPEGLQSEVAKAIANL-SVDSKVAKAVSENGGIDILADLARS 410
+AI+ GGV +L+ L S +Q E A+A+AN+ S + KA+ + GG+++L L S
Sbjct: 38 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS 97
Query: 411 TNRLVAEEVVGGLWNLSVGEDHXXXXXXXXXXXXLVDLIFKWSSWNDGVLERXXXXXXX- 469
T+ V +E L N++ G D V+++ K + D +++
Sbjct: 98 TDSEVQKEAARALANIASGPDEAIKAIVDAGG---VEVLVKLLTSTDSEVQKEAARALAN 154
Query: 470 -XXXDDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLE 528
D+ + AGGV LV L S E VQ++AARALAN +A G +++ A V +
Sbjct: 155 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALAN-IASGPTSAIKAIV--D 210
Query: 529 TGALEALVQLTFSKHEGVRQEAAGALWNL 557
G +E L +L S V++EA AL N+
Sbjct: 211 AGGVEVLQKLLTSTDSEVQKEAQRALENI 239
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/213 (34%), Positives = 108/213 (50%), Gaps = 11/213 (5%)
Query: 486 VHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEG 545
V LV L S E Q++AAR LA +A G +++ A V + G +E LV+L S
Sbjct: 4 VEKLVKLLTSTDSE-TQKEAARDLAE-IASGPASAIKAIV--DAGGVEVLVKLLTSTDSE 59
Query: 546 VRQEAAGALWNL-SFDDRNRXXXXXXXXXXXXXXXVRSCSSSSQGLQERAAGALWGLSLS 604
V++EAA AL N+ S D V+ +S+ +Q+ AA AL ++
Sbjct: 60 VQKEAARALANIASGPDE---AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 116
Query: 605 EANSI-AIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNAL-CIVEGGGVQALI 662
+I AI GGV L+ L S +V + AA AL N+A P A+ IV+ GGV+ L+
Sbjct: 117 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLV 176
Query: 663 HLCSSSLSKMARFMAALALAYIVDGRMEDIASI 695
L +S+ S++ + AA ALA I G I +I
Sbjct: 177 KLLTSTDSEVQKE-AARALANIASGPTSAIKAI 208
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 96/202 (47%), Gaps = 10/202 (4%)
Query: 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKVA-KAVSENGGIDILADLARSTNRLVAEE 418
V L+ L S Q E A+ +A ++ A KA+ + GG+++L L ST+ V +E
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 419 VVGGLWNLSVGEDHXXXXXXXXXXXXLVDLIFKWSSWNDGVLERXXXXXXX--XXXDDKC 476
L N++ G D V+++ K + D +++ D+
Sbjct: 64 AARALANIASGPDEAIKAIVDAGG---VEVLVKLLTSTDSEVQKEAARALANIASGPDEA 120
Query: 477 SLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALV 536
+ AGGV LV L S E VQ++AARALAN +A G + A V + G +E LV
Sbjct: 121 IKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALAN-IASGPDEAIKAIV--DAGGVEVLV 176
Query: 537 QLTFSKHEGVRQEAAGALWNLS 558
+L S V++EAA AL N++
Sbjct: 177 KLLTSTDSEVQKEAARALANIA 198
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 352 EAILRHGGVRLLLDLARSPPEGLQSEVAKAIANL-SVDSKVAKAVSENGGIDILADLARS 410
+AI+ GGV +L+ L S +Q E A+A+AN+ S + KA+ + GG+++L L S
Sbjct: 164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS 223
Query: 411 TNRLVAEEVVGGLWNLSVG 429
T+ V +E L N+ G
Sbjct: 224 TDSEVQKEAQRALENIKSG 242
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 352 EAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVS--ENGGIDILADLAR 409
+ + + GG+ L+DL RSP + +Q A A+ NL S K + +NG + ++ L R
Sbjct: 38 QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR 97
Query: 410 STNRLVAEEVVGGLWNLSVGEDHXXXXXXXXXXXXLVD-LIFKWSSWNDG 458
+ N + +++ G LWNLS D L D +I +S W DG
Sbjct: 98 TGNAEIQKQLTGLLWNLS-STDELKEELIADALPVLADRVIIPFSGWCDG 146
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 473 DDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGAL 532
D+ +V + GG+ LV L RS + VQ+ AA AL NLV S +N + G
Sbjct: 33 DESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFR--STTNKLETRRQNGIR 89
Query: 533 EALVQLTFSKHEGVRQEAAGALWNLSFDD 561
EA+ L + + ++++ G LWNLS D
Sbjct: 90 EAVSLLRRTGNAEIQKQLTGLLWNLSSTD 118
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 585 SSSQGLQERAAGALWGLSL-SEANSIAIGREGGVAPLIAL-ARSAVVDVHETAAGALWNL 642
S +Q +Q+ AAGAL L S N + R+ G+ ++L R+ ++ + G LWNL
Sbjct: 55 SPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL 114
Query: 643 A 643
+
Sbjct: 115 S 115
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 586 SSQGLQERAAGALW---GLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNL 642
SSQ + +A GA + E+ + + GG+ L+ L RS +V + AAGAL NL
Sbjct: 12 SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNL 71
Query: 643 AF 644
F
Sbjct: 72 VF 73
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 10/212 (4%)
Query: 349 QRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANL-SVDSKVAKAVSENGGIDILADL 407
++ +A++ G + L+ L SP E + E A++N+ S ++ +AV + G + L L
Sbjct: 45 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 104
Query: 408 ARSTNRLVAEEVVGGLWNL-SVGEDHXXXXXXXXXXXXLVDLIFKWSSWNDGVLERXXXX 466
S N + +E + L N+ S G + LV L+ SS N+ +L+
Sbjct: 105 LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL---SSPNEQILQEALWA 161
Query: 467 XXXXXXDDKCSLE-VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAV 525
++ V AG + ALV L S + +QE A AL+N+ + G N AV
Sbjct: 162 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE-ALWALSNIASGG--NEQKQAV 218
Query: 526 GLETGALEALVQLTFSKHEGVRQEAAGALWNL 557
E GALE L QL ++E +++EA AL L
Sbjct: 219 K-EAGALEKLEQLQSHENEKIQKEAQEALEKL 249
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 24/213 (11%)
Query: 489 LVMLARSFMFEGVQEQ--AARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGV 546
L + + + +QEQ A R + +++ D N AV ++ GAL ALVQL S +E +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS--DGNEQIQAV-IDAGALPALVQLLSSPNEQI 70
Query: 547 RQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXVRSCSSSSQGLQERAAGALWGLSLSEA 606
QEA AL N++ + + S S + Q LQE ALW LS
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQE----ALWALS---- 121
Query: 607 NSIAIGRE--------GGVAPLIALARSAVVDVHETAAGALWNLAFNPGNAL-CIVEGGG 657
N + G E G + L+ L S + + A AL N+A + +++ G
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181
Query: 658 VQALIHLCSSSLSKMARFMAALALAYIVDGRME 690
+ AL+ L SS ++ + A AL+ I G E
Sbjct: 182 LPALVQLLSSPNEQILQE-ALWALSNIASGGNE 213
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 385 LSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNL-SVGEDHXXXXXXXXXXX 443
LS ++ +AV + G + L L S N + +E + L N+ S G +
Sbjct: 40 LSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99
Query: 444 XLVDLIFKWSSWNDGVLERXXXXXXXXXXDDKCSLE-VARAGGVHALVMLARSFMFEGVQ 502
LV L+ SS N+ +L+ ++ V AG + ALV L S + +Q
Sbjct: 100 ALVQLL---SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 156
Query: 503 EQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNL 557
E A AL+N+ + G N AV E GALE L QL ++E +++EA AL L
Sbjct: 157 E-ALWALSNIASGG--NEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 85/198 (42%), Gaps = 25/198 (12%)
Query: 489 LVMLARSFMFEGVQEQ--AARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGV 546
L + + + +QEQ A R + +++ D N AV ++ GAL ALVQL S +E +
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS--DGNEQIQAV-IDAGALPALVQLLSSPNEQI 70
Query: 547 RQEAAGALWNLSFDDRNRXXXXXXXXXXXXXXXVRSCSSSSQGLQERAAGALWGLSLSEA 606
QEA AL N++ + + S S + Q LQE ALW LS
Sbjct: 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS-SPNEQILQE----ALWALS---- 121
Query: 607 NSIAIGRE--------GGVAPLIALARSAVVDVHETAAGALWNLAFNPGN--ALCIVEGG 656
N + G E G + L+ L S + + A AL N+A GN + E G
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAG 180
Query: 657 GVQALIHLCSSSLSKMAR 674
++ L L S K+ +
Sbjct: 181 ALEKLEQLQSHENEKIQK 198
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 9/167 (5%)
Query: 393 KAVSENGGIDILADLARSTNRLVAEEVVGGLWNL-SVGEDHXXXXXXXXXXXXLVDLIFK 451
+AV + G + L L S N + +E + L N+ S G + LV L+
Sbjct: 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-- 105
Query: 452 WSSWNDGVLERXXXXXXXXXXDDKCSLE-VARAGGVHALVMLARSFMFEGVQEQAARALA 510
SS N+ +L+ ++ V AG + ALV L S + +QE A AL+
Sbjct: 106 -SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE-ALWALS 163
Query: 511 NLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNL 557
N+ + G N AV E GALE L QL ++E +++EA AL L
Sbjct: 164 NIASGG--NEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKL 207
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 505 AARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNR 564
A R L+ + + G N AV ++ GAL ALVQL S +E + QEA AL N++ +
Sbjct: 32 ALRKLSQIASGG--NEQIQAV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 565 XXXXXXXXXXXXXXXVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGRE--------GG 616
+ S S + Q LQE ALW LS N + G E G
Sbjct: 89 IQAVIDAGALPALVQLLS-SPNEQILQE----ALWALS----NIASGGNEQIQAVIDAGA 139
Query: 617 VAPLIALARSAVVDVHETAAGALWNLAFNPGN--ALCIVEGGGVQALIHLCSSSLSKMAR 674
+ L+ L S + + A AL N+A GN + E G ++ L L S K+ +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGALEKLEQLQSHENEKIQK 198
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 479 EVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL 538
EV ++G V V F +Q +AA AL N+ + S N V ++ GA+ V+L
Sbjct: 74 EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS---GTSENTKVVIDHGAVPIFVKL 130
Query: 539 TFSKHEGVRQEAAGALWNLSFD 560
S + VR++A AL N++ D
Sbjct: 131 LGSSSDDVREQAVWALGNVAGD 152
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 36.2 bits (82), Expect = 0.074, Method: Composition-based stats.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
Query: 2 LGSSPCLWSSLD--------LRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQA 53
L S LW +LD L + S + S+C+ LQ L G +D ++ A
Sbjct: 42 LASDESLWQTLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 101
Query: 54 R--RLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIK-TVAYCCPKL 110
+ L +N+ C ++ +++ L+ L+ L C + ++ VA+ +
Sbjct: 102 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN--LSWCFDFTEKHVQVAVAHVSETI 159
Query: 111 RRLWLSGVRE-VNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYL 161
+L LSG R+ + ++ L ++C LV + DS + + + YL
Sbjct: 160 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 211
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 479 EVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL 538
EV ++G V V F +Q +AA AL N+ + S N V ++ GA+ V+L
Sbjct: 112 EVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS---GTSENTKVVIDHGAVPIFVKL 168
Query: 539 TFSKHEGVRQEAAGALWNLSFD 560
S + VR++A AL N++ D
Sbjct: 169 LGSSSDDVREQAVWALGNVAGD 190
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 31/151 (20%)
Query: 22 SAAESLSSRCTNLQALWFRGALSAD--AMIILQARRLREINV-EFCRELTDAIFSAI-VA 77
SA E L +RC NL++L A+ + A ++ +A +L E+ + E+ ++S + VA
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260
Query: 78 RHEMLEI-------------LHFGLDVCDRISS-----------DAIKTVAYCCPKLRRL 113
E+ L VC R+++ D +K + CPKL+RL
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQ-CPKLQRL 319
Query: 114 WLSGVREVNGDAINALAKQCRQLVEVGFIDS 144
W+ E G + LA C+ L E+ S
Sbjct: 320 WVLDYIEDAG--LEVLASTCKDLRELRVFPS 348
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 32.7 bits (73), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 6/161 (3%)
Query: 5 SPCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQAR--RLREINVE 62
SP +DL + S + S+C+ LQ L G +D ++ A+ L +N+
Sbjct: 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150
Query: 63 FCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKT-VAYCCPKLRRLWLSGVRE- 120
C ++ +++ L+ L+ L C + ++ VA+ + +L LSG R+
Sbjct: 151 GCSGFSEFALQTLLSSCSRLDELN--LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208
Query: 121 VNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYL 161
+ ++ L ++C LV + DS + + + YL
Sbjct: 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 97
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 98 ASPHAHISEQAVWALGNIAGD 118
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 32.7 bits (73), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 41 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 97
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 98 ASPHAHISEQAVWALGNIAGD 118
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 101
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 102 ASPHAHISEQAVWALGNIAGD 122
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 32.7 bits (73), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 594 AAGALWGLSL--SEANSIAIGREGGVAPLIALARSAV-VDVHETAAGALWNLAFNPGNAL 650
A GAL +S + N IAI GV L+ L R A +D+ E G LWNL+ + +
Sbjct: 110 ACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM 169
Query: 651 CIVE 654
IV+
Sbjct: 170 EIVD 173
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 531 ALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNR 564
AL A+ L ++HE V + A+GAL NL+ D RN+
Sbjct: 356 ALSAIADLLTNEHERVVKAASGALRNLAVDARNK 389
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 45 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 101
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 102 ASPHAHISEQAVWALGNIAGD 122
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 102
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 103 ASPHAHISEQAVWALGNIAGD 123
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 102
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 103 ASPHAHISEQAVWALGNIAGD 123
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 80 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 136
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 137 ASPHAHISEQAVWALGNIAGD 157
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 72 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 128
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 129 ASPHAHISEQAVWALGNIAGD 149
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 152
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 153 ASPHAHISEQAVWALGNIAGD 173
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 152
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 153 ASPHAHISEQAVWALGNIAGD 173
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 52 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 108
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 109 ASPHAHISEQAVWALGNIAGD 129
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 46 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 102
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 103 ASPHAHISEQAVWALGNIAGD 123
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 47 IIRAGLIPKFVSFLGRTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 103
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 104 ASPHAHISEQAVWALGNIAGD 124
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 152
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 153 ASPHAHISEQAVWALGNIAGD 173
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 82 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 138
Query: 540 FSKHEGVRQEAAGALWNLSFD 560
S H + ++A AL N++ D
Sbjct: 139 ASPHAHISEQAVWALGNIAGD 159
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 505 AARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNR 564
A R L+ + + G N AV ++ GAL ALVQL S +E + QEA AL N++ +
Sbjct: 32 ALRKLSQIASGG--NEQIQAV-IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88
Query: 565 XXXXXXXXXXXXXXXVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGRE--------GG 616
+ S S + Q LQE ALW LS N + G E G
Sbjct: 89 IQAVIDAGALPALVQLLS-SPNEQILQE----ALWALS----NIASGGNEQIQAVIDAGA 139
Query: 617 VAPLIALARSAVVDVHETAAGALWNLAFNPGN--ALCIVEGGGVQALIHLCSSSLSKMAR 674
+ L+ L S + + A AL N+A GN + E G AL L SS K+ +
Sbjct: 140 LPALVQLLSSPNEQILQEALWALSNIASG-GNEQKQAVKEAGAEPALEQLQSSPNEKIQK 198
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 51/137 (37%), Gaps = 24/137 (17%)
Query: 528 ETGALEALVQLTFSKHE----------------GVRQE-----AAGALWNLSFDDRNRXX 566
E + LVQL H+ GVR E GAL L+ D NR
Sbjct: 397 EAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCTGALHILARDPMNRME 456
Query: 567 XXXXXXXXXXXXXVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS 626
V+ SS + +Q AAG L L+ + + AI EG APL+ L S
Sbjct: 457 IFRLNTIPLF---VQLLYSSVENIQRVAAGVLCELAQDKEAADAIDAEGASAPLMELLHS 513
Query: 627 AVVDVHETAAGALWNLA 643
AA L+ ++
Sbjct: 514 RNEGTATYAAAVLFRIS 530
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539
+ RAG + V +Q ++A AL N +A G S A V + GA+ A + L
Sbjct: 115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTN-IASGTSEQTKAVV--DGGAIPAFISLL 171
Query: 540 FSKHEGVRQEAAGALWNLS 558
S H + ++A AL N++
Sbjct: 172 ASPHAHISEQAVWALGNIA 190
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 588 QGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETA---AGALWNLAF 644
Q + +AA + LS EA+ AI R + I DV ETA AG L NL+
Sbjct: 27 QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSH 85
Query: 645 NPGNALCIVEGGGVQALIHLCSSSL 669
+ L I + GG+ AL+ + S +
Sbjct: 86 HREGLLAIFKSGGIPALVKMLGSPV 110
>pdb|3TT9|A Chain A, Crystal Structure Of The Stable Degradation Fragment Of
Human Plakophilin 2 Isoform A (Pkp2a) C752r Variant
Length = 233
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 372 EGLQSEVAKAIANLSVDSKVAK-AVSENGGIDILADLARSTNRL-VAEEVVGGLWNLSVG 429
E +Q V A+ NL + K V+E G+ L + + T L +++ G LWNLS
Sbjct: 66 EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125
Query: 430 EDHXXXXXXXXXXXXLVDLIFKWSSWNDG 458
+ ++I +S W +G
Sbjct: 126 DKLKNLMITEALLTLTENIIIPFSGWPEG 154
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 499 EGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLS 558
E VQ AL NLV + N N V G L L ++ +++ G LWNLS
Sbjct: 66 EDVQRAVCGALRNLVF--EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123
Query: 559 FDDR 562
+D+
Sbjct: 124 SNDK 127
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 593 RAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETA---AGALWNLAFNPGNA 649
+AA + LS EA+ AI R + I DV ETA AG L NL+ +
Sbjct: 34 KAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV-ETARCTAGTLHNLSHHREGL 92
Query: 650 LCIVEGGGVQALIHLCSSSL 669
L I + GG+ AL+ + S +
Sbjct: 93 LAIFKSGGIPALVKMLGSPV 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,537,216
Number of Sequences: 62578
Number of extensions: 694538
Number of successful extensions: 1905
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1730
Number of HSP's gapped (non-prelim): 164
length of query: 864
length of database: 14,973,337
effective HSP length: 107
effective length of query: 757
effective length of database: 8,277,491
effective search space: 6266060687
effective search space used: 6266060687
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)