Query 048757
Match_columns 864
No_of_seqs 745 out of 4230
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 2.5E-38 5.4E-43 382.6 49.7 518 303-845 93-716 (2102)
2 PLN03200 cellulose synthase-in 100.0 1.2E-36 2.6E-41 368.1 51.0 475 303-806 50-638 (2102)
3 KOG4224 Armadillo repeat prote 100.0 5.3E-35 1.1E-39 286.8 23.8 364 307-689 83-449 (550)
4 KOG4224 Armadillo repeat prote 100.0 1.2E-32 2.5E-37 270.4 23.9 365 306-690 123-497 (550)
5 KOG0166 Karyopherin (importin) 100.0 4.2E-29 9.1E-34 265.0 33.0 360 311-685 68-435 (514)
6 KOG0166 Karyopherin (importin) 100.0 4.7E-28 1E-32 257.0 35.0 375 296-689 97-489 (514)
7 COG5064 SRP1 Karyopherin (impo 100.0 3.7E-27 7.9E-32 229.8 28.0 368 298-685 103-495 (526)
8 COG5064 SRP1 Karyopherin (impo 100.0 6.6E-28 1.4E-32 235.0 22.5 361 311-686 73-443 (526)
9 PF05804 KAP: Kinesin-associat 99.9 3.1E-23 6.7E-28 233.6 38.8 384 282-689 264-652 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.8E-22 3.9E-27 227.4 36.9 339 322-685 262-606 (708)
11 KOG4341 F-box protein containi 99.9 3.8E-23 8.1E-28 209.3 4.5 221 2-224 105-337 (483)
12 KOG1048 Neural adherens juncti 99.9 6.1E-20 1.3E-24 201.4 28.7 367 306-684 230-682 (717)
13 KOG1048 Neural adherens juncti 99.8 3.8E-19 8.2E-24 195.2 22.0 325 357-689 232-644 (717)
14 KOG4500 Rho/Rac GTPase guanine 99.8 2.5E-17 5.3E-22 166.6 27.4 462 319-830 52-549 (604)
15 KOG2122 Beta-catenin-binding p 99.8 3.7E-18 8.1E-23 193.6 23.3 364 313-691 201-606 (2195)
16 KOG4341 F-box protein containi 99.8 1.8E-20 4E-25 189.9 3.9 213 7-224 138-363 (483)
17 KOG2122 Beta-catenin-binding p 99.8 4.2E-17 9.2E-22 185.2 26.9 362 264-647 199-604 (2195)
18 KOG4199 Uncharacterized conser 99.7 2.2E-15 4.7E-20 148.1 28.6 320 357-687 103-445 (461)
19 KOG2120 SCF ubiquitin ligase, 99.7 3.3E-18 7.2E-23 165.7 6.4 206 9-224 187-400 (419)
20 KOG4199 Uncharacterized conser 99.7 7.1E-15 1.5E-19 144.5 28.5 322 311-651 106-451 (461)
21 PRK09687 putative lyase; Provi 99.7 8.9E-15 1.9E-19 150.8 24.2 258 356-682 21-278 (280)
22 PRK09687 putative lyase; Provi 99.7 1E-14 2.3E-19 150.3 22.0 255 309-641 23-279 (280)
23 KOG3665 ZYG-1-like serine/thre 99.7 5.5E-14 1.2E-18 161.4 29.3 546 6-624 59-676 (699)
24 KOG1222 Kinesin associated pro 99.6 1.5E-13 3.3E-18 141.0 28.8 360 311-689 262-666 (791)
25 PRK13800 putative oxidoreducta 99.6 1.1E-13 2.3E-18 167.3 30.5 273 311-682 623-895 (897)
26 KOG4500 Rho/Rac GTPase guanine 99.6 1.6E-13 3.5E-18 139.2 26.1 365 311-687 89-476 (604)
27 KOG2120 SCF ubiquitin ligase, 99.6 7.3E-16 1.6E-20 149.6 8.1 214 2-224 131-355 (419)
28 PF10508 Proteasom_PSMB: Prote 99.6 1.5E-12 3.2E-17 146.8 35.2 343 308-664 76-441 (503)
29 KOG1293 Proteins containing ar 99.6 9.3E-13 2E-17 141.4 31.2 515 286-847 29-666 (678)
30 PRK13800 putative oxidoreducta 99.6 5.4E-13 1.2E-17 161.2 26.2 273 356-711 619-891 (897)
31 PF10508 Proteasom_PSMB: Prote 99.5 2.4E-11 5.2E-16 137.0 35.1 354 312-687 41-421 (503)
32 PF04826 Arm_2: Armadillo-like 99.5 1.3E-12 2.7E-17 131.5 19.7 197 395-604 8-206 (254)
33 KOG1222 Kinesin associated pro 99.5 5.5E-11 1.2E-15 122.5 27.9 350 289-655 285-675 (791)
34 PF04826 Arm_2: Armadillo-like 99.5 4.3E-12 9.4E-17 127.6 19.1 200 481-689 9-208 (254)
35 KOG1947 Leucine rich repeat pr 99.4 3.1E-13 6.8E-18 155.0 8.6 120 23-144 205-331 (482)
36 KOG1293 Proteins containing ar 99.4 1.8E-10 3.8E-15 124.2 26.9 383 314-711 14-525 (678)
37 cd00116 LRR_RI Leucine-rich re 99.3 1.9E-11 4.2E-16 131.8 17.2 162 54-222 108-293 (319)
38 KOG3665 ZYG-1-like serine/thre 99.3 4E-10 8.8E-15 129.8 27.3 181 33-217 61-260 (699)
39 PF01602 Adaptin_N: Adaptin N 99.3 9.5E-10 2.1E-14 127.5 30.1 427 310-803 80-521 (526)
40 cd00256 VATPase_H VATPase_H, r 99.3 2.4E-09 5.2E-14 114.8 29.2 324 311-644 55-425 (429)
41 KOG1947 Leucine rich repeat pr 99.3 7.8E-12 1.7E-16 143.5 8.9 159 31-191 160-330 (482)
42 PF01602 Adaptin_N: Adaptin N 99.2 2.9E-09 6.3E-14 123.5 28.3 326 309-689 42-372 (526)
43 KOG2171 Karyopherin (importin) 99.2 1.3E-08 2.9E-13 117.1 30.8 448 311-802 6-500 (1075)
44 cd00256 VATPase_H VATPase_H, r 99.2 2.5E-08 5.3E-13 107.1 29.2 321 358-686 53-425 (429)
45 cd00020 ARM Armadillo/beta-cat 99.2 5.5E-10 1.2E-14 101.0 13.9 115 526-643 3-119 (120)
46 cd00116 LRR_RI Leucine-rich re 99.2 5.7E-10 1.2E-14 120.4 16.0 81 108-191 137-230 (319)
47 cd00020 ARM Armadillo/beta-cat 99.1 1.5E-09 3.3E-14 98.0 14.1 116 566-685 2-119 (120)
48 KOG2171 Karyopherin (importin) 99.1 4.5E-08 9.7E-13 112.9 27.3 358 311-693 120-511 (1075)
49 KOG1909 Ran GTPase-activating 99.0 1.8E-09 3.9E-14 108.5 11.7 206 8-219 31-310 (382)
50 KOG0168 Putative ubiquitin fus 99.0 5.4E-08 1.2E-12 107.7 23.1 341 311-668 169-655 (1051)
51 KOG2759 Vacuolar H+-ATPase V1 99.0 1.6E-07 3.5E-12 96.9 24.2 324 311-644 67-438 (442)
52 KOG2023 Nuclear transport rece 99.0 6E-08 1.3E-12 104.5 20.7 269 400-686 129-463 (885)
53 TIGR02270 conserved hypothetic 98.9 1.2E-07 2.6E-12 102.7 22.2 241 310-644 55-296 (410)
54 TIGR02270 conserved hypothetic 98.9 1.7E-07 3.7E-12 101.5 23.3 244 357-687 53-297 (410)
55 PTZ00429 beta-adaptin; Provisi 98.9 8.1E-06 1.7E-10 94.9 35.5 324 311-686 142-471 (746)
56 PF03224 V-ATPase_H_N: V-ATPas 98.8 4.7E-07 1E-11 96.3 23.0 230 311-549 57-304 (312)
57 PLN03210 Resistant to P. syrin 98.8 6.8E-09 1.5E-13 129.8 8.9 86 132-224 800-886 (1153)
58 PF03224 V-ATPase_H_N: V-ATPas 98.8 2.9E-07 6.3E-12 97.9 19.8 225 401-634 57-304 (312)
59 COG1413 FOG: HEAT repeat [Ener 98.8 2.1E-06 4.7E-11 93.0 26.9 248 309-643 43-303 (335)
60 KOG3678 SARM protein (with ste 98.8 2.6E-07 5.7E-12 95.5 18.1 278 391-689 172-455 (832)
61 KOG2759 Vacuolar H+-ATPase V1 98.7 3.7E-06 7.9E-11 87.1 24.2 321 358-686 65-438 (442)
62 KOG3678 SARM protein (with ste 98.7 2.3E-07 4.9E-12 96.0 15.2 255 524-834 174-434 (832)
63 KOG2160 Armadillo/beta-catenin 98.7 7.8E-07 1.7E-11 91.0 18.3 186 369-559 94-282 (342)
64 COG1413 FOG: HEAT repeat [Ener 98.7 2.6E-06 5.6E-11 92.3 23.6 254 358-689 43-307 (335)
65 KOG3207 Beta-tubulin folding c 98.7 2.9E-09 6.3E-14 110.0 0.5 186 30-222 119-316 (505)
66 PTZ00429 beta-adaptin; Provisi 98.7 5.8E-05 1.3E-09 88.0 35.5 407 291-804 12-431 (746)
67 KOG0946 ER-Golgi vesicle-tethe 98.7 1.6E-05 3.4E-10 88.1 28.8 337 309-689 22-402 (970)
68 KOG3207 Beta-tubulin folding c 98.7 2.4E-09 5.1E-14 110.6 -0.3 234 8-259 122-370 (505)
69 PLN00113 leucine-rich repeat r 98.7 2.1E-08 4.5E-13 125.2 7.8 37 29-65 90-129 (968)
70 KOG2160 Armadillo/beta-catenin 98.6 2.4E-06 5.2E-11 87.4 17.6 179 498-683 96-279 (342)
71 PLN00113 leucine-rich repeat r 98.6 1.2E-07 2.6E-12 118.4 10.2 109 106-219 234-344 (968)
72 KOG1909 Ran GTPase-activating 98.6 2.8E-07 6E-12 93.1 10.2 186 2-194 88-310 (382)
73 KOG2973 Uncharacterized conser 98.5 2.9E-05 6.2E-10 77.2 22.9 271 361-644 6-315 (353)
74 PF05536 Neurochondrin: Neuroc 98.5 8.7E-05 1.9E-09 84.2 29.6 156 311-474 7-170 (543)
75 KOG2023 Nuclear transport rece 98.5 1.8E-06 3.8E-11 93.5 14.6 360 311-693 395-782 (885)
76 KOG0168 Putative ubiquitin fus 98.5 7.9E-06 1.7E-10 91.0 19.0 254 401-667 169-437 (1051)
77 KOG2973 Uncharacterized conser 98.5 4.1E-05 8.9E-10 76.1 21.6 273 312-603 6-315 (353)
78 KOG1062 Vesicle coat complex A 98.5 6.2E-05 1.4E-09 84.0 25.3 337 311-689 144-547 (866)
79 KOG1241 Karyopherin (importin) 98.5 1.2E-05 2.6E-10 88.8 19.5 348 314-689 95-480 (859)
80 KOG1789 Endocytosis protein RM 98.4 0.00015 3.4E-09 82.3 28.2 336 323-668 1739-2142(2235)
81 KOG4413 26S proteasome regulat 98.4 0.00012 2.6E-09 73.1 24.1 342 311-664 84-460 (524)
82 PLN03210 Resistant to P. syrin 98.4 4.4E-07 9.6E-12 113.7 8.4 111 105-223 799-909 (1153)
83 KOG0213 Splicing factor 3b, su 98.4 0.00011 2.3E-09 81.0 24.4 453 314-801 558-1060(1172)
84 KOG0946 ER-Golgi vesicle-tethe 98.4 7.7E-05 1.7E-09 82.9 23.6 307 303-611 55-408 (970)
85 KOG1059 Vesicle coat complex A 98.4 0.00026 5.7E-09 78.1 27.2 214 312-559 147-365 (877)
86 KOG1242 Protein containing ada 98.4 0.00011 2.5E-09 80.3 24.5 365 291-686 83-483 (569)
87 KOG4646 Uncharacterized conser 98.4 4.5E-06 9.7E-11 72.1 10.8 148 530-681 16-165 (173)
88 COG5215 KAP95 Karyopherin (imp 98.3 0.0002 4.4E-09 76.6 23.5 338 319-689 15-398 (858)
89 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00035 7.6E-09 75.2 25.9 248 388-644 14-269 (371)
90 KOG1241 Karyopherin (importin) 98.3 0.00019 4.1E-09 79.7 23.0 356 312-693 132-537 (859)
91 KOG0212 Uncharacterized conser 98.3 5.9E-05 1.3E-09 80.7 18.5 348 306-685 81-443 (675)
92 KOG0567 HEAT repeat-containing 98.2 0.00036 7.7E-09 68.2 21.6 231 400-686 37-280 (289)
93 KOG4646 Uncharacterized conser 98.2 6.3E-06 1.4E-10 71.2 8.6 115 572-689 17-131 (173)
94 KOG1062 Vesicle coat complex A 98.2 0.0034 7.4E-08 70.6 31.5 284 318-649 116-421 (866)
95 KOG1824 TATA-binding protein-i 98.2 0.00063 1.4E-08 77.3 25.5 296 313-644 572-886 (1233)
96 KOG2734 Uncharacterized conser 98.2 0.00046 1E-08 72.0 22.6 263 294-559 110-400 (536)
97 PF13646 HEAT_2: HEAT repeats; 98.2 4.7E-06 1E-10 70.3 7.0 88 573-682 1-88 (88)
98 KOG4413 26S proteasome regulat 98.2 0.00079 1.7E-08 67.4 22.8 297 328-644 62-377 (524)
99 PF14664 RICTOR_N: Rapamycin-i 98.1 0.0047 1E-07 66.6 29.0 305 311-643 27-363 (371)
100 KOG0567 HEAT repeat-containing 98.1 0.00043 9.3E-09 67.7 18.7 226 360-643 38-279 (289)
101 KOG1789 Endocytosis protein RM 98.1 0.0019 4.2E-08 73.8 26.1 309 374-689 1741-2119(2235)
102 KOG3864 Uncharacterized conser 98.0 3.3E-06 7.2E-11 79.1 3.7 74 94-168 112-188 (221)
103 KOG0213 Splicing factor 3b, su 98.0 0.00026 5.6E-09 78.1 18.1 260 401-689 801-1068(1172)
104 KOG1060 Vesicle coat complex A 98.0 0.0095 2E-07 66.9 29.6 250 312-602 74-349 (968)
105 KOG4194 Membrane glycoprotein 98.0 7.1E-06 1.5E-10 88.2 4.5 130 6-143 77-230 (873)
106 KOG4194 Membrane glycoprotein 97.9 1.1E-06 2.4E-11 94.2 -1.6 58 106-165 267-326 (873)
107 KOG3864 Uncharacterized conser 97.9 7.2E-06 1.6E-10 76.9 3.8 88 56-148 103-190 (221)
108 PF13646 HEAT_2: HEAT repeats; 97.9 2.2E-05 4.8E-10 66.2 6.6 86 311-424 1-88 (88)
109 KOG1824 TATA-binding protein-i 97.9 0.0035 7.7E-08 71.5 24.3 362 309-720 651-1035(1233)
110 KOG0212 Uncharacterized conser 97.9 0.00099 2.2E-08 71.7 18.9 277 397-689 82-368 (675)
111 COG5240 SEC21 Vesicle coat com 97.8 0.012 2.7E-07 63.6 26.2 419 313-811 69-560 (898)
112 PF14580 LRR_9: Leucine-rich r 97.8 5.7E-06 1.2E-10 78.5 1.2 128 52-191 17-149 (175)
113 PF14580 LRR_9: Leucine-rich r 97.8 8.3E-06 1.8E-10 77.4 1.8 106 109-220 20-126 (175)
114 COG5215 KAP95 Karyopherin (imp 97.8 0.011 2.4E-07 63.9 24.8 315 363-693 99-444 (858)
115 PF00514 Arm: Armadillo/beta-c 97.8 4.1E-05 8.9E-10 53.6 4.6 41 388-428 1-41 (41)
116 KOG1517 Guanine nucleotide bin 97.8 0.00059 1.3E-08 78.3 16.0 228 458-692 485-738 (1387)
117 PF00514 Arm: Armadillo/beta-c 97.8 3.2E-05 7E-10 54.1 3.8 40 604-643 1-40 (41)
118 KOG1060 Vesicle coat complex A 97.8 0.018 3.9E-07 64.7 26.6 382 361-804 38-456 (968)
119 KOG1061 Vesicle coat complex A 97.7 0.0027 5.9E-08 71.4 20.5 390 311-743 51-473 (734)
120 PF10165 Ric8: Guanine nucleot 97.7 0.004 8.7E-08 69.3 22.1 261 291-561 4-339 (446)
121 COG5181 HSH155 U2 snRNP splice 97.7 0.0016 3.5E-08 70.6 17.6 258 360-647 606-873 (975)
122 KOG1242 Protein containing ada 97.7 0.007 1.5E-07 66.7 21.8 312 357-689 95-447 (569)
123 KOG0444 Cytoskeletal regulator 97.7 8.9E-07 1.9E-11 95.4 -7.6 194 12-224 155-379 (1255)
124 PF05536 Neurochondrin: Neuroc 97.7 0.0048 1E-07 70.2 21.6 239 359-604 6-262 (543)
125 KOG2259 Uncharacterized conser 97.6 0.00068 1.5E-08 74.2 13.2 220 445-687 203-476 (823)
126 KOG0618 Serine/threonine phosp 97.6 2.8E-05 6.1E-10 88.5 2.8 107 109-219 360-488 (1081)
127 KOG2982 Uncharacterized conser 97.6 7.2E-05 1.6E-09 74.2 5.2 183 36-224 49-266 (418)
128 KOG2734 Uncharacterized conser 97.6 0.024 5.1E-07 59.7 23.5 259 379-644 105-400 (536)
129 KOG1077 Vesicle coat complex A 97.6 0.12 2.7E-06 57.6 29.9 296 311-643 113-432 (938)
130 KOG2982 Uncharacterized conser 97.6 3E-05 6.5E-10 76.8 2.4 175 9-191 73-258 (418)
131 KOG1077 Vesicle coat complex A 97.6 0.016 3.4E-07 64.3 23.0 311 313-657 150-501 (938)
132 KOG1058 Vesicle coat complex C 97.6 0.0065 1.4E-07 67.8 20.0 320 316-689 106-466 (948)
133 COG5231 VMA13 Vacuolar H+-ATPa 97.6 0.0073 1.6E-07 60.6 18.5 233 406-643 156-427 (432)
134 COG5181 HSH155 U2 snRNP splice 97.6 0.0017 3.7E-08 70.4 14.9 260 401-689 606-873 (975)
135 COG5369 Uncharacterized conser 97.5 0.00087 1.9E-08 71.6 11.7 296 376-684 407-739 (743)
136 KOG1517 Guanine nucleotide bin 97.5 0.0044 9.5E-08 71.5 17.4 223 376-604 488-733 (1387)
137 KOG1061 Vesicle coat complex A 97.4 0.0046 9.9E-08 69.7 16.9 327 311-687 123-454 (734)
138 KOG2259 Uncharacterized conser 97.4 0.0034 7.3E-08 69.0 15.1 255 363-644 203-475 (823)
139 COG5240 SEC21 Vesicle coat com 97.4 0.023 4.9E-07 61.6 20.1 298 294-643 254-554 (898)
140 KOG1943 Beta-tubulin folding c 97.3 0.46 1E-05 56.1 31.3 346 309-685 341-746 (1133)
141 COG5238 RNA1 Ran GTPase-activa 97.3 0.0038 8.3E-08 61.5 12.7 68 156-224 185-259 (388)
142 PRK15387 E3 ubiquitin-protein 97.3 0.00011 2.4E-09 85.9 2.4 17 203-219 441-457 (788)
143 PF10165 Ric8: Guanine nucleot 97.3 0.032 6.9E-07 62.2 21.7 235 368-605 42-339 (446)
144 COG5369 Uncharacterized conser 97.3 0.0022 4.7E-08 68.6 11.5 237 311-557 433-739 (743)
145 KOG1259 Nischarin, modulator o 97.3 0.00017 3.7E-09 71.5 3.2 156 24-191 174-361 (490)
146 COG5231 VMA13 Vacuolar H+-ATPa 97.3 0.021 4.5E-07 57.5 17.2 232 314-557 154-426 (432)
147 KOG0444 Cytoskeletal regulator 97.2 2.4E-05 5.2E-10 84.8 -4.1 31 134-165 222-254 (1255)
148 KOG0618 Serine/threonine phosp 97.2 0.0001 2.2E-09 84.1 0.5 126 53-191 358-485 (1081)
149 KOG1240 Protein kinase contain 97.1 0.017 3.7E-07 68.0 17.6 265 360-644 424-725 (1431)
150 PF13513 HEAT_EZ: HEAT-like re 97.1 0.00062 1.4E-08 51.2 4.3 55 588-642 1-55 (55)
151 PRK14707 hypothetical protein; 97.1 1.4 3.1E-05 55.8 33.9 394 304-715 326-735 (2710)
152 COG5238 RNA1 Ran GTPase-activa 97.1 0.0026 5.6E-08 62.6 8.9 202 9-215 32-280 (388)
153 KOG1059 Vesicle coat complex A 97.1 0.45 9.8E-06 53.6 26.5 212 402-644 147-365 (877)
154 PRK14707 hypothetical protein; 97.0 1.7 3.8E-05 55.1 34.1 472 306-802 244-735 (2710)
155 KOG0211 Protein phosphatase 2A 97.0 0.13 2.8E-06 60.1 23.4 367 311-711 239-617 (759)
156 PRK15370 E3 ubiquitin-protein 97.0 0.00053 1.2E-08 80.7 4.3 55 156-219 325-379 (754)
157 smart00185 ARM Armadillo/beta- 96.9 0.0022 4.7E-08 44.7 5.1 38 606-643 3-40 (41)
158 KOG4535 HEAT and armadillo rep 96.9 0.0017 3.7E-08 68.4 6.3 268 408-684 304-601 (728)
159 smart00185 ARM Armadillo/beta- 96.9 0.0026 5.6E-08 44.3 5.4 40 389-428 2-41 (41)
160 PRK15387 E3 ubiquitin-protein 96.9 0.00081 1.7E-08 78.8 4.3 23 414-436 547-569 (788)
161 smart00367 LRR_CC Leucine-rich 96.9 0.001 2.2E-08 41.0 2.7 24 107-130 1-24 (26)
162 PF13513 HEAT_EZ: HEAT-like re 96.9 0.0015 3.2E-08 49.1 4.2 55 629-684 1-55 (55)
163 KOG0211 Protein phosphatase 2A 96.8 0.092 2E-06 61.3 20.2 371 311-711 278-656 (759)
164 KOG1078 Vesicle coat complex C 96.7 1.8 3.8E-05 49.6 31.4 64 488-560 249-312 (865)
165 PRK15386 type III secretion pr 96.6 0.0036 7.8E-08 67.2 6.5 166 28-224 48-217 (426)
166 smart00367 LRR_CC Leucine-rich 96.6 0.0024 5.2E-08 39.4 2.8 24 79-104 1-24 (26)
167 KOG1859 Leucine-rich repeat pr 96.6 0.00038 8.3E-09 77.3 -1.3 183 23-222 75-294 (1096)
168 KOG0915 Uncharacterized conser 96.5 0.19 4.1E-06 61.2 19.8 310 361-693 821-1167(1702)
169 COG5096 Vesicle coat complex, 96.5 1.8 3.9E-05 50.5 27.0 102 311-429 94-196 (757)
170 PRK15370 E3 ubiquitin-protein 96.5 0.0047 1E-07 72.9 6.7 186 6-219 198-400 (754)
171 PF12348 CLASP_N: CLASP N term 96.4 0.021 4.5E-07 58.0 10.2 183 495-687 17-207 (228)
172 PF09759 Atx10homo_assoc: Spin 96.4 0.011 2.3E-07 50.2 6.4 65 374-438 2-70 (102)
173 PF12717 Cnd1: non-SMC mitotic 96.3 0.18 3.8E-06 48.7 15.9 92 322-429 1-93 (178)
174 PF13764 E3_UbLigase_R4: E3 ub 96.3 0.54 1.2E-05 55.5 22.2 262 356-646 82-408 (802)
175 PF11841 DUF3361: Domain of un 96.3 0.078 1.7E-06 48.8 12.1 123 392-516 4-133 (160)
176 KOG4151 Myosin assembly protei 96.2 0.054 1.2E-06 61.7 13.1 225 427-666 491-722 (748)
177 PF08569 Mo25: Mo25-like; Int 96.2 0.84 1.8E-05 48.5 21.3 204 436-649 72-288 (335)
178 KOG1020 Sister chromatid cohes 96.2 5 0.00011 49.6 32.5 104 311-429 818-922 (1692)
179 PF12719 Cnd3: Nuclear condens 96.2 0.23 5E-06 52.5 17.2 167 315-496 33-209 (298)
180 PF12348 CLASP_N: CLASP N term 96.2 0.074 1.6E-06 53.9 13.1 179 454-644 18-206 (228)
181 PF13855 LRR_8: Leucine rich r 96.2 0.00086 1.9E-08 51.8 -0.9 57 108-166 1-59 (61)
182 PF11841 DUF3361: Domain of un 96.1 0.059 1.3E-06 49.6 10.2 120 524-644 5-131 (160)
183 PF04063 DUF383: Domain of unk 96.1 0.046 9.9E-07 52.8 10.1 125 542-666 7-157 (192)
184 PF05004 IFRD: Interferon-rela 96.1 0.42 9E-06 50.5 18.0 193 360-557 45-255 (309)
185 KOG0915 Uncharacterized conser 96.0 1.1 2.4E-05 55.0 22.9 271 360-644 1000-1306(1702)
186 PF09759 Atx10homo_assoc: Spin 96.0 0.02 4.4E-07 48.4 6.3 65 590-654 2-70 (102)
187 KOG1058 Vesicle coat complex C 96.0 0.25 5.5E-06 55.7 16.1 259 366-669 107-409 (948)
188 PF12460 MMS19_C: RNAPII trans 96.0 3.3 7.1E-05 46.1 25.6 344 312-689 2-397 (415)
189 KOG1078 Vesicle coat complex C 95.9 2 4.2E-05 49.3 22.7 257 312-602 248-531 (865)
190 KOG2062 26S proteasome regulat 95.9 0.58 1.2E-05 52.9 18.4 240 400-691 414-658 (929)
191 KOG2123 Uncharacterized conser 95.8 0.0035 7.7E-08 61.9 1.0 99 109-212 20-122 (388)
192 KOG1943 Beta-tubulin folding c 95.7 0.86 1.9E-05 53.9 19.8 255 398-683 340-608 (1133)
193 KOG4658 Apoptotic ATPase [Sign 95.7 0.0074 1.6E-07 72.5 3.5 183 28-224 567-787 (889)
194 KOG2123 Uncharacterized conser 95.7 0.0033 7.2E-08 62.1 0.3 81 53-145 18-99 (388)
195 KOG4308 LRR-containing protein 95.6 0.0029 6.3E-08 70.6 -0.5 162 56-224 89-279 (478)
196 KOG4151 Myosin assembly protei 95.6 0.29 6.4E-06 55.9 15.0 220 388-623 493-720 (748)
197 COG5096 Vesicle coat complex, 95.4 0.34 7.5E-06 56.2 15.4 141 531-687 56-196 (757)
198 KOG2739 Leucine-rich acidic nu 95.4 0.0026 5.5E-08 62.8 -1.3 107 52-166 41-153 (260)
199 PF12755 Vac14_Fab1_bd: Vacuol 95.4 0.044 9.6E-07 46.4 6.2 68 571-642 27-94 (97)
200 PF13764 E3_UbLigase_R4: E3 ub 95.4 1.3 2.9E-05 52.4 20.2 225 354-581 113-385 (802)
201 PF04078 Rcd1: Cell differenti 95.4 0.58 1.3E-05 46.8 14.8 222 412-642 8-260 (262)
202 KOG3036 Protein involved in ce 95.3 1.1 2.5E-05 43.9 15.9 151 459-613 95-257 (293)
203 PF12755 Vac14_Fab1_bd: Vacuol 95.2 0.063 1.4E-06 45.5 6.7 92 591-684 3-94 (97)
204 KOG1832 HIV-1 Vpr-binding prot 95.2 1.4 3E-05 50.9 18.5 387 291-689 332-826 (1516)
205 KOG2062 26S proteasome regulat 95.2 3.3 7.2E-05 47.1 21.3 171 485-685 519-695 (929)
206 KOG1859 Leucine-rich repeat pr 95.2 0.0015 3.2E-08 72.9 -4.1 103 78-191 185-288 (1096)
207 KOG1240 Protein kinase contain 95.1 1.5 3.2E-05 52.6 19.2 251 322-603 436-725 (1431)
208 KOG4658 Apoptotic ATPase [Sign 95.1 0.024 5.2E-07 68.3 5.1 16 206-221 716-731 (889)
209 KOG4308 LRR-containing protein 95.1 0.0043 9.3E-08 69.3 -1.2 184 34-224 89-307 (478)
210 KOG1259 Nischarin, modulator o 95.0 0.016 3.5E-07 57.9 2.6 130 79-221 283-413 (490)
211 KOG3036 Protein involved in ce 94.9 1.4 3E-05 43.3 15.4 146 374-526 95-255 (293)
212 PF08045 CDC14: Cell division 94.9 0.43 9.3E-06 48.1 12.4 99 374-473 107-208 (257)
213 PF12717 Cnd1: non-SMC mitotic 94.8 0.75 1.6E-05 44.4 13.8 93 498-604 1-93 (178)
214 PF05004 IFRD: Interferon-rela 94.8 1.9 4E-05 45.7 17.7 192 487-688 46-259 (309)
215 KOG4535 HEAT and armadillo rep 94.3 0.12 2.6E-06 55.1 7.3 184 374-560 407-604 (728)
216 PF11698 V-ATPase_H_C: V-ATPas 94.3 0.07 1.5E-06 46.5 4.6 70 572-643 44-114 (119)
217 PF11698 V-ATPase_H_C: V-ATPas 94.3 0.12 2.7E-06 45.0 6.1 68 359-426 44-113 (119)
218 KOG2739 Leucine-rich acidic nu 94.3 0.0061 1.3E-07 60.2 -2.2 86 135-221 44-130 (260)
219 PRK15386 type III secretion pr 94.2 0.04 8.7E-07 59.4 3.7 120 77-221 49-170 (426)
220 PF06025 DUF913: Domain of Unk 94.1 3.3 7.1E-05 45.1 18.0 101 439-543 105-209 (379)
221 KOG4237 Extracellular matrix p 93.9 0.027 5.8E-07 58.8 1.6 43 28-70 87-131 (498)
222 PF07814 WAPL: Wings apart-lik 93.9 4 8.6E-05 44.4 18.4 242 360-604 23-356 (361)
223 PF13855 LRR_8: Leucine rich r 93.9 0.0037 8.1E-08 48.2 -3.6 39 105-145 22-60 (61)
224 PF04063 DUF383: Domain of unk 93.9 0.38 8.3E-06 46.5 9.4 123 369-494 6-157 (192)
225 KOG2025 Chromosome condensatio 93.9 13 0.00028 42.5 21.9 133 323-474 60-192 (892)
226 PF13516 LRR_6: Leucine Rich r 93.9 0.052 1.1E-06 32.6 2.3 23 107-130 1-23 (24)
227 PF12799 LRR_4: Leucine Rich r 93.8 0.054 1.2E-06 38.3 2.5 33 109-144 2-34 (44)
228 KOG2274 Predicted importin 9 [ 93.7 19 0.0004 42.5 23.2 227 454-689 461-692 (1005)
229 PF08045 CDC14: Cell division 93.7 0.95 2.1E-05 45.7 11.9 101 587-687 104-209 (257)
230 PF02985 HEAT: HEAT repeat; I 93.7 0.12 2.6E-06 33.3 3.8 27 311-337 2-28 (31)
231 PF12799 LRR_4: Leucine Rich r 93.6 0.12 2.5E-06 36.6 4.0 33 134-167 1-35 (44)
232 KOG1644 U2-associated snRNP A' 93.6 0.054 1.2E-06 51.4 2.9 13 179-191 137-149 (233)
233 KOG2999 Regulator of Rac1, req 93.5 1.4 3.1E-05 48.1 13.4 156 359-516 84-244 (713)
234 PF02985 HEAT: HEAT repeat; I 93.3 0.14 3.1E-06 32.9 3.7 28 617-644 2-29 (31)
235 KOG2611 Neurochondrin/leucine- 93.0 9.1 0.0002 41.5 18.2 194 362-559 15-225 (698)
236 KOG1644 U2-associated snRNP A' 92.9 0.046 1E-06 51.9 1.3 104 54-167 42-151 (233)
237 KOG2025 Chromosome condensatio 92.9 4.2 9.1E-05 46.2 16.3 178 485-683 86-291 (892)
238 PF04078 Rcd1: Cell differenti 92.8 6.4 0.00014 39.7 16.0 192 456-654 8-228 (262)
239 PF08569 Mo25: Mo25-like; Int 92.7 10 0.00022 40.4 18.6 204 352-561 70-285 (335)
240 PF14668 RICTOR_V: Rapamycin-i 92.5 0.52 1.1E-05 37.3 6.5 67 547-615 4-70 (73)
241 PF01347 Vitellogenin_N: Lipop 92.5 2.6 5.6E-05 49.9 15.7 203 399-638 395-616 (618)
242 PF07814 WAPL: Wings apart-lik 92.3 6.4 0.00014 42.8 17.0 244 401-646 23-357 (361)
243 KOG1967 DNA repair/transcripti 92.1 0.62 1.3E-05 54.1 9.1 151 484-640 867-1020(1030)
244 KOG4653 Uncharacterized conser 92.1 3.2 6.9E-05 48.2 14.5 219 365-599 734-960 (982)
245 KOG2032 Uncharacterized conser 92.0 5.4 0.00012 43.5 15.3 158 438-602 252-414 (533)
246 PF12460 MMS19_C: RNAPII trans 92.0 24 0.00052 39.3 26.0 188 441-646 190-396 (415)
247 KOG2611 Neurochondrin/leucine- 91.8 22 0.00048 38.7 19.1 137 311-451 13-163 (698)
248 PF11701 UNC45-central: Myosin 91.7 0.37 7.9E-06 45.3 5.8 144 533-683 6-156 (157)
249 PF11701 UNC45-central: Myosin 91.6 0.85 1.8E-05 42.8 8.1 144 312-469 6-156 (157)
250 PLN03150 hypothetical protein; 91.5 0.3 6.5E-06 57.4 6.1 62 154-218 440-501 (623)
251 PLN03150 hypothetical protein; 91.1 0.24 5.2E-06 58.2 4.8 106 55-168 419-527 (623)
252 PF12719 Cnd3: Nuclear condens 91.0 14 0.00031 38.9 17.7 161 406-582 34-208 (298)
253 COG4886 Leucine-rich repeat (L 91.0 0.15 3.4E-06 56.5 2.9 173 32-222 116-292 (394)
254 COG5116 RPN2 26S proteasome re 90.9 3.8 8.3E-05 45.1 12.8 99 575-690 520-619 (926)
255 COG4886 Leucine-rich repeat (L 90.8 0.25 5.5E-06 54.8 4.5 155 52-223 114-271 (394)
256 KOG1788 Uncharacterized conser 90.6 37 0.0008 40.6 20.7 227 429-666 673-960 (2799)
257 PF06025 DUF913: Domain of Unk 90.5 15 0.00033 40.0 17.5 124 504-628 79-209 (379)
258 smart00638 LPD_N Lipoprotein N 90.4 12 0.00025 44.0 18.0 165 485-675 394-567 (574)
259 smart00638 LPD_N Lipoprotein N 90.2 12 0.00026 43.9 17.8 138 441-600 394-542 (574)
260 PF13516 LRR_6: Leucine Rich r 90.2 0.23 5E-06 29.7 1.9 23 79-104 1-23 (24)
261 COG5116 RPN2 26S proteasome re 90.0 1.2 2.5E-05 48.9 8.2 133 534-690 520-654 (926)
262 KOG2999 Regulator of Rac1, req 89.9 17 0.00038 40.2 16.7 178 401-581 85-266 (713)
263 KOG2274 Predicted importin 9 [ 89.4 53 0.0012 39.0 24.8 303 320-644 461-780 (1005)
264 KOG4653 Uncharacterized conser 89.1 9.5 0.00021 44.5 14.7 179 408-604 736-919 (982)
265 PF01347 Vitellogenin_N: Lipop 88.4 2.6 5.7E-05 49.8 10.8 164 530-710 395-578 (618)
266 PF14668 RICTOR_V: Rapamycin-i 88.0 2.1 4.5E-05 34.0 6.3 66 375-440 4-70 (73)
267 KOG0617 Ras suppressor protein 87.5 0.018 3.9E-07 52.8 -6.2 79 133-217 101-183 (264)
268 COG5218 YCG1 Chromosome conden 87.4 56 0.0012 36.8 22.0 106 357-474 90-198 (885)
269 PF06371 Drf_GBD: Diaphanous G 86.7 3.1 6.6E-05 40.5 8.4 78 350-427 99-186 (187)
270 KOG0617 Ras suppressor protein 86.7 0.033 7.2E-07 51.1 -5.0 111 107-223 55-166 (264)
271 KOG1967 DNA repair/transcripti 86.4 2.8 6.2E-05 49.0 8.8 145 530-680 867-1018(1030)
272 PF05918 API5: Apoptosis inhib 85.9 2.3 4.9E-05 48.0 7.6 97 308-424 58-158 (556)
273 KOG0414 Chromosome condensatio 85.7 15 0.00032 44.6 14.2 138 311-472 921-1064(1251)
274 KOG3763 mRNA export factor TAP 85.6 1.3 2.7E-05 49.0 5.3 91 99-189 209-308 (585)
275 KOG1788 Uncharacterized conser 85.4 27 0.00059 41.7 15.6 278 288-601 663-980 (2799)
276 KOG1248 Uncharacterized conser 85.4 26 0.00056 42.7 16.0 223 410-644 665-898 (1176)
277 PF05918 API5: Apoptosis inhib 85.2 5.1 0.00011 45.3 10.0 131 313-468 27-158 (556)
278 KOG0414 Chromosome condensatio 85.0 4.4 9.4E-05 48.9 9.6 140 486-644 921-1064(1251)
279 PF10363 DUF2435: Protein of u 84.3 3.2 6.8E-05 34.8 6.0 75 585-668 14-89 (92)
280 COG5209 RCD1 Uncharacterized p 83.8 6.1 0.00013 38.3 8.3 149 460-612 117-277 (315)
281 KOG2032 Uncharacterized conser 83.7 76 0.0016 35.1 19.1 105 314-428 263-371 (533)
282 PF08324 PUL: PUL domain; Int 83.6 11 0.00025 38.9 11.5 155 360-515 65-232 (268)
283 smart00368 LRR_RI Leucine rich 83.4 1.4 3E-05 27.6 2.6 23 108-131 2-24 (28)
284 PF12530 DUF3730: Protein of u 83.0 56 0.0012 33.0 16.2 132 407-559 9-151 (234)
285 KOG3763 mRNA export factor TAP 82.9 1.8 3.8E-05 47.9 5.0 44 73-118 211-254 (585)
286 KOG2956 CLIP-associating prote 82.5 82 0.0018 34.6 16.9 143 441-600 330-474 (516)
287 KOG2137 Protein kinase [Signal 82.1 16 0.00035 42.0 12.2 136 527-669 386-521 (700)
288 PF12530 DUF3730: Protein of u 81.8 62 0.0013 32.7 17.4 190 454-670 12-217 (234)
289 KOG0531 Protein phosphatase 1, 81.4 0.13 2.8E-06 57.4 -4.4 103 52-167 93-197 (414)
290 PF06371 Drf_GBD: Diaphanous G 80.4 6.2 0.00014 38.3 7.6 79 301-386 99-186 (187)
291 PF12031 DUF3518: Domain of un 80.2 3.1 6.6E-05 41.1 5.0 84 546-631 140-232 (257)
292 KOG1832 HIV-1 Vpr-binding prot 80.0 5.2 0.00011 46.5 7.4 165 392-571 594-785 (1516)
293 KOG1822 Uncharacterized conser 79.6 86 0.0019 40.6 17.8 256 532-824 878-1145(2067)
294 KOG0472 Leucine-rich repeat pr 79.4 0.73 1.6E-05 48.6 0.6 101 52-167 433-539 (565)
295 KOG1820 Microtubule-associated 79.3 38 0.00083 40.6 14.5 178 408-601 262-441 (815)
296 cd03568 VHS_STAM VHS domain fa 78.2 9.6 0.00021 35.1 7.5 73 309-387 37-110 (144)
297 KOG4237 Extracellular matrix p 77.9 0.9 1.9E-05 47.9 0.7 42 52-97 89-130 (498)
298 COG5218 YCG1 Chromosome conden 77.7 17 0.00036 40.6 10.1 104 571-681 91-194 (885)
299 PF12031 DUF3518: Domain of un 77.6 6.4 0.00014 38.9 6.4 81 414-496 139-228 (257)
300 PF14500 MMS19_N: Dos2-interac 76.4 97 0.0021 31.9 15.3 212 314-558 4-236 (262)
301 PF08324 PUL: PUL domain; Int 76.4 9.1 0.0002 39.7 7.8 158 532-689 65-234 (268)
302 KOG2956 CLIP-associating prote 76.1 84 0.0018 34.5 14.5 143 531-685 330-476 (516)
303 PF13306 LRR_5: Leucine rich r 75.8 1.2 2.6E-05 40.1 1.0 116 29-158 9-128 (129)
304 KOG0301 Phospholipase A2-activ 75.7 86 0.0019 36.0 15.0 164 498-668 557-728 (745)
305 cd03567 VHS_GGA VHS domain fam 75.6 24 0.00051 32.3 9.2 73 309-387 38-116 (139)
306 PF11864 DUF3384: Domain of un 75.4 1.5E+02 0.0033 33.5 18.8 254 370-643 41-329 (464)
307 PF08167 RIX1: rRNA processing 75.0 35 0.00075 32.3 10.6 105 311-426 27-141 (165)
308 cd03569 VHS_Hrs_Vps27p VHS dom 74.9 13 0.00029 34.1 7.5 73 309-387 41-114 (142)
309 PF11865 DUF3385: Domain of un 74.6 29 0.00064 32.6 9.9 143 401-557 12-155 (160)
310 COG5209 RCD1 Uncharacterized p 74.1 15 0.00032 35.8 7.6 141 502-649 117-273 (315)
311 KOG1820 Microtubule-associated 74.0 96 0.0021 37.4 15.9 174 498-685 266-442 (815)
312 PF11865 DUF3385: Domain of un 73.5 39 0.00084 31.8 10.4 145 358-513 10-156 (160)
313 PF10363 DUF2435: Protein of u 73.5 6.2 0.00013 33.1 4.5 68 360-428 5-72 (92)
314 smart00368 LRR_RI Leucine rich 73.4 3.6 7.9E-05 25.6 2.4 23 80-105 2-24 (28)
315 PF11707 Npa1: Ribosome 60S bi 73.3 1.4E+02 0.003 32.1 16.0 161 401-562 58-240 (330)
316 KOG0472 Leucine-rich repeat pr 73.0 1.6 3.5E-05 46.1 1.1 92 129-223 430-544 (565)
317 KOG0301 Phospholipase A2-activ 73.0 1E+02 0.0022 35.4 14.7 181 315-506 550-738 (745)
318 KOG1248 Uncharacterized conser 72.8 2.5E+02 0.0054 34.9 29.2 221 454-682 665-894 (1176)
319 cd03561 VHS VHS domain family; 72.5 20 0.00044 32.5 8.1 73 309-387 37-112 (133)
320 PF13251 DUF4042: Domain of un 72.3 95 0.0021 29.9 13.3 154 374-560 2-175 (182)
321 PF14726 RTTN_N: Rotatin, an a 71.9 39 0.00084 28.7 8.8 70 356-425 28-97 (98)
322 KOG2137 Protein kinase [Signal 71.9 23 0.00051 40.8 9.8 134 355-496 386-520 (700)
323 KOG0531 Protein phosphatase 1, 71.8 1.3 2.7E-05 49.5 0.0 57 106-166 116-172 (414)
324 KOG1566 Conserved protein Mo25 70.7 1.4E+02 0.003 31.1 19.8 224 352-582 73-311 (342)
325 KOG4464 Signaling protein RIC- 67.8 1.8E+02 0.004 31.4 20.3 155 312-474 48-233 (532)
326 cd03561 VHS VHS domain family; 67.6 44 0.00095 30.3 9.1 75 530-604 37-113 (133)
327 KOG1566 Conserved protein Mo25 66.6 1.7E+02 0.0037 30.5 16.8 201 435-647 74-289 (342)
328 PF13251 DUF4042: Domain of un 66.2 65 0.0014 31.0 10.3 108 533-644 42-174 (182)
329 smart00288 VHS Domain present 66.1 28 0.0006 31.6 7.5 73 309-387 37-111 (133)
330 KOG1243 Protein kinase [Genera 65.9 93 0.002 36.0 12.8 187 437-644 327-515 (690)
331 PF03130 HEAT_PBS: PBS lyase H 65.6 3.5 7.5E-05 25.5 1.0 27 590-626 1-27 (27)
332 KOG1020 Sister chromatid cohes 64.6 4.1E+02 0.0088 34.2 29.9 144 358-517 816-963 (1692)
333 KOG1991 Nuclear transport rece 64.1 3.4E+02 0.0073 33.1 29.7 274 357-644 409-711 (1010)
334 PF06685 DUF1186: Protein of u 64.0 1.5E+02 0.0031 30.2 12.7 98 571-689 31-145 (249)
335 KOG1949 Uncharacterized conser 63.6 1.7E+02 0.0037 34.0 14.0 146 533-691 177-336 (1005)
336 PF13504 LRR_7: Leucine rich r 63.3 5.5 0.00012 21.5 1.4 12 156-167 1-12 (17)
337 PF11791 Aconitase_B_N: Aconit 61.9 11 0.00024 34.3 4.0 42 373-426 78-121 (154)
338 PF14225 MOR2-PAG1_C: Cell mor 61.4 1.5E+02 0.0033 30.4 12.6 164 489-669 69-241 (262)
339 PF14225 MOR2-PAG1_C: Cell mor 61.3 2E+02 0.0044 29.6 18.9 159 404-582 69-239 (262)
340 cd03569 VHS_Hrs_Vps27p VHS dom 61.1 69 0.0015 29.4 9.2 72 530-603 41-114 (142)
341 cd03568 VHS_STAM VHS domain fa 60.4 35 0.00075 31.4 7.1 71 358-428 37-110 (144)
342 PF14631 FancD2: Fanconi anaem 59.8 4E+02 0.0086 34.9 18.4 130 538-679 443-576 (1426)
343 PF11707 Npa1: Ribosome 60S bi 59.2 2.5E+02 0.0055 30.0 20.2 158 311-475 58-240 (330)
344 PF08167 RIX1: rRNA processing 59.1 39 0.00085 32.0 7.5 110 530-644 25-143 (165)
345 cd03567 VHS_GGA VHS domain fam 57.6 47 0.001 30.4 7.3 70 358-427 38-115 (139)
346 KOG4579 Leucine-rich repeat (L 57.5 3.8 8.2E-05 36.8 0.2 13 107-119 99-111 (177)
347 smart00288 VHS Domain present 56.8 70 0.0015 29.0 8.4 73 530-603 37-111 (133)
348 PF06685 DUF1186: Protein of u 56.6 2.3E+02 0.005 28.8 13.1 85 374-480 58-151 (249)
349 cd08050 TAF6 TATA Binding Prot 55.3 1.2E+02 0.0025 32.8 11.1 100 312-428 181-297 (343)
350 PLN03076 ARF guanine nucleotid 55.1 3.5E+02 0.0075 36.1 16.8 269 411-689 1149-1492(1780)
351 smart00567 EZ_HEAT E-Z type HE 53.9 16 0.00034 23.0 2.7 28 630-667 2-29 (30)
352 KOG4464 Signaling protein RIC- 53.3 3.3E+02 0.0072 29.6 17.1 112 291-409 69-197 (532)
353 PF08506 Cse1: Cse1; InterPro 53.2 3.4E+02 0.0073 29.6 15.7 143 481-639 207-370 (370)
354 PF12830 Nipped-B_C: Sister ch 53.1 2.2E+02 0.0048 27.5 14.1 66 358-428 8-74 (187)
355 KOG1243 Protein kinase [Genera 53.0 2.6E+02 0.0056 32.7 13.4 187 481-685 327-514 (690)
356 COG5656 SXM1 Importin, protein 52.0 4.7E+02 0.01 30.9 18.2 279 398-688 407-713 (970)
357 PF04821 TIMELESS: Timeless pr 51.5 2.6E+02 0.0056 28.9 12.6 58 311-387 15-72 (266)
358 PF07723 LRR_2: Leucine Rich R 51.1 13 0.00029 22.7 1.9 25 56-80 2-26 (26)
359 KOG2933 Uncharacterized conser 50.0 80 0.0017 32.8 8.1 138 531-682 89-230 (334)
360 PF14726 RTTN_N: Rotatin, an a 49.1 1.5E+02 0.0032 25.3 8.4 68 528-598 28-95 (98)
361 PF00560 LRR_1: Leucine Rich R 48.9 7.7 0.00017 22.5 0.6 10 157-166 1-10 (22)
362 COG5098 Chromosome condensatio 48.9 1.1E+02 0.0023 35.4 9.5 108 573-689 301-418 (1128)
363 PF14631 FancD2: Fanconi anaem 48.7 6.5E+02 0.014 33.0 17.7 114 570-689 378-505 (1426)
364 PF10521 DUF2454: Protein of u 48.3 1.2E+02 0.0027 31.6 9.8 73 530-602 119-202 (282)
365 PF00790 VHS: VHS domain; Int 46.8 37 0.00079 31.1 5.0 73 309-387 42-118 (140)
366 PF08506 Cse1: Cse1; InterPro 46.2 1.6E+02 0.0036 32.0 10.6 148 528-681 208-370 (370)
367 cd08050 TAF6 TATA Binding Prot 45.4 1.7E+02 0.0038 31.5 10.6 102 412-513 230-339 (343)
368 KOG1991 Nuclear transport rece 44.8 6.7E+02 0.015 30.7 26.1 315 312-653 465-810 (1010)
369 KOG2933 Uncharacterized conser 42.6 2.2E+02 0.0047 29.7 9.9 144 617-808 90-236 (334)
370 COG5098 Chromosome condensatio 42.2 1.6E+02 0.0035 34.1 9.6 108 442-558 301-414 (1128)
371 cd03565 VHS_Tom1 VHS domain fa 41.8 1.4E+02 0.0031 27.3 8.0 73 309-387 38-115 (141)
372 PF12054 DUF3535: Domain of un 41.2 68 0.0015 35.9 6.9 227 545-805 102-341 (441)
373 PF12830 Nipped-B_C: Sister ch 41.2 66 0.0014 31.2 6.0 65 616-689 9-77 (187)
374 KOG2549 Transcription initiati 41.0 4.6E+02 0.0099 29.8 12.7 145 361-514 210-370 (576)
375 PF00790 VHS: VHS domain; Int 40.4 1.4E+02 0.0029 27.4 7.7 72 530-603 42-118 (140)
376 PF09450 DUF2019: Domain of un 39.5 11 0.00024 32.2 0.3 28 778-805 48-75 (106)
377 PLN03205 ATR interacting prote 39.5 4.8E+02 0.01 28.2 12.0 228 401-654 325-591 (652)
378 PF08389 Xpo1: Exportin 1-like 39.0 1.8E+02 0.0039 26.4 8.6 108 312-423 29-148 (148)
379 PF13001 Ecm29: Proteasome sta 38.7 2.7E+02 0.0058 31.9 11.3 172 454-644 248-443 (501)
380 KOG4579 Leucine-rich repeat (L 38.5 12 0.00025 33.8 0.3 79 109-191 28-109 (177)
381 PF14663 RasGEF_N_2: Rapamycin 37.8 79 0.0017 27.8 5.4 38 616-653 9-46 (115)
382 KOG1848 Uncharacterized conser 37.4 2.7E+02 0.0058 35.3 11.1 179 441-628 841-1029(1610)
383 PF08216 CTNNBL: Catenin-beta- 37.4 42 0.00091 28.9 3.4 41 376-416 64-104 (108)
384 PF10521 DUF2454: Protein of u 37.2 4.4E+02 0.0095 27.4 11.9 69 358-426 119-201 (282)
385 PF11791 Aconitase_B_N: Aconit 37.0 31 0.00067 31.6 2.7 29 616-644 95-123 (154)
386 KOG0413 Uncharacterized conser 37.0 1.7E+02 0.0037 35.3 9.1 127 457-604 945-1074(1529)
387 PF03382 DUF285: Mycoplasma pr 36.8 19 0.0004 32.0 1.4 10 129-138 56-65 (120)
388 KOG0413 Uncharacterized conser 35.8 1.3E+02 0.0027 36.3 7.8 129 544-689 945-1076(1529)
389 cd03565 VHS_Tom1 VHS domain fa 35.0 3.6E+02 0.0078 24.7 9.9 74 530-603 38-115 (141)
390 KOG1848 Uncharacterized conser 34.6 8.5E+02 0.018 31.2 14.5 31 484-514 928-958 (1610)
391 KOG2005 26S proteasome regulat 34.1 8.2E+02 0.018 28.6 18.4 329 301-689 406-746 (878)
392 KOG1949 Uncharacterized conser 33.1 8.8E+02 0.019 28.6 19.9 186 361-559 177-370 (1005)
393 PF04821 TIMELESS: Timeless pr 32.3 5.8E+02 0.013 26.3 12.7 150 521-689 31-211 (266)
394 KOG2199 Signal transducing ada 30.3 1.5E+02 0.0034 31.7 6.8 73 309-387 45-118 (462)
395 PF08216 CTNNBL: Catenin-beta- 29.7 96 0.0021 26.8 4.4 39 632-670 63-101 (108)
396 PF03382 DUF285: Mycoplasma pr 29.4 32 0.0007 30.5 1.6 11 102-112 55-65 (120)
397 PF12726 SEN1_N: SEN1 N termin 29.3 4.2E+02 0.0091 32.1 11.5 139 488-644 445-585 (727)
398 PF14663 RasGEF_N_2: Rapamycin 29.1 99 0.0022 27.2 4.6 39 359-397 9-47 (115)
399 KOG3735 Tropomodulin and leiom 26.6 96 0.0021 32.6 4.6 28 103-131 250-277 (353)
400 KOG2005 26S proteasome regulat 26.3 1.1E+03 0.024 27.6 29.0 79 309-389 48-127 (878)
401 PF06012 DUF908: Domain of Unk 26.3 2.8E+02 0.006 29.7 8.4 64 590-653 238-306 (329)
402 PF08389 Xpo1: Exportin 1-like 26.2 4.8E+02 0.01 23.4 9.5 127 500-639 3-148 (148)
403 KOG2549 Transcription initiati 25.8 9E+02 0.02 27.6 11.9 145 533-686 210-370 (576)
404 PF11229 DUF3028: Protein of u 25.5 1E+03 0.022 27.0 14.6 234 441-689 98-356 (589)
405 PF04388 Hamartin: Hamartin pr 25.1 1E+03 0.023 28.3 13.4 139 530-689 4-143 (668)
406 COG5110 RPN1 26S proteasome re 24.7 1.1E+03 0.023 26.9 15.1 139 311-451 49-218 (881)
407 PF12231 Rif1_N: Rap1-interact 24.6 9.3E+02 0.02 26.2 23.1 262 371-644 59-352 (372)
408 KOG0891 DNA-dependent protein 24.2 2E+03 0.042 30.5 16.5 275 314-605 486-765 (2341)
409 KOG2073 SAP family cell cycle 24.1 2.3E+02 0.0049 34.3 7.6 60 479-538 185-247 (838)
410 PF06012 DUF908: Domain of Unk 23.4 3.9E+02 0.0085 28.6 8.8 61 415-475 238-300 (329)
411 PF04499 SAPS: SIT4 phosphatas 21.2 9.8E+02 0.021 27.1 11.7 38 350-387 54-92 (475)
412 KOG2038 CAATT-binding transcri 21.1 1.1E+03 0.024 28.1 11.7 108 571-689 304-412 (988)
413 PF14500 MMS19_N: Dos2-interac 20.6 9.3E+02 0.02 24.7 15.9 211 364-602 5-236 (262)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=382.58 Aligned_cols=518 Identities=24% Similarity=0.241 Sum_probs=397.2
Q ss_pred HHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccC--CcccccchHhHHHHHHhCCHHHHHHHhcCCC---HHHHHH
Q 048757 303 DDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVID--DQNAMVDCQRAEAILRHGGVRLLLDLARSPP---EGLQSE 377 (864)
Q Consensus 303 ~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~---~~~~~~ 377 (864)
..+...++||+|+.+|++.+++.|+.|+.+|.+|+... +++ ....+...|++|+|+.++++++ ..++..
T Consensus 93 ~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~------~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 93 VKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHV------GSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred HHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhh------hhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 34444444999999999999999999999999999764 221 2234567999999999999863 346777
Q ss_pred HHHHHHHHhCCchhH-HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCC
Q 048757 378 VAKAIANLSVDSKVA-KAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSW 455 (864)
Q Consensus 378 a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~ 455 (864)
++.+|.+|+..++.+ ..+++.|+++.|+++|+++++.++..|+.+|.+++.+ ++.+..+++.|++|.|++++++ +.
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~s--g~ 244 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQ--GN 244 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcc--CC
Confidence 899999999977655 5678999999999999999999999999999888764 6789999999999999999974 35
Q ss_pred CHHHHHHHHHHHHHhcCCC-cchHHHHhcCcHHHHHHHHHccC--------chhHHHHHHHHHHHHhhcCCC--------
Q 048757 456 NDGVLERAAGALANLAADD-KCSLEVARAGGVHALVMLARSFM--------FEGVQEQAARALANLVAHGDS-------- 518 (864)
Q Consensus 456 ~~~v~~~a~~~L~~L~~~~-~~~~~i~~~~~i~~Lv~ll~~~~--------~~~v~~~a~~aL~~L~~~~~~-------- 518 (864)
+..+++.|+++|.+|+.++ +++..+++.|+++.|++++..+. +..++++|+|+|.|+|.....
T Consensus 245 ~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~l 324 (2102)
T PLN03200 245 EVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGEL 324 (2102)
T ss_pred ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHh
Confidence 5689999999999999975 58999999999999999998532 234689999999998863100
Q ss_pred ---C-----------------------------------------------------------------cccchhhhccC
Q 048757 519 ---N-----------------------------------------------------------------SNNAAVGLETG 530 (864)
Q Consensus 519 ---~-----------------------------------------------------------------~~~~~~~~~~~ 530 (864)
. +..+..+.+.+
T Consensus 325 l~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~d 404 (2102)
T PLN03200 325 SESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAE 404 (2102)
T ss_pred hcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhcc
Confidence 0 00011222345
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhh
Q 048757 531 ALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANS 608 (864)
Q Consensus 531 ~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~ 608 (864)
+++.|+.++...+.+++..++++|++++.+ ++.++.+.+.|+++.|+++|.+ +++.+++.|+++|++++.. ++++
T Consensus 405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 566677777777788999999999999976 6779999999999999999997 7899999999999999975 6788
Q ss_pred HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHH-HHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcC
Q 048757 609 IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNAL-CIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 609 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~-~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
..+.+.|++|+|+++|.++++++++.|+|+|.|++.++++.. .+.+.|++++|+++|.+++ +..|..|+++|.++..+
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999998766555 4557899999999999885 88999999999999765
Q ss_pred Cc-cceeeecccccCCCcccchHHHHHHHHHHHHhhccc----------ccchhhhhHHHHhccChhhHHHHhhccchhH
Q 048757 688 RM-EDIASIGSSLEGTSESENLDVIRRMALKHIEDFCAG----------RIALKHIEDFVRSFSDPQAFATALASAVPKS 756 (864)
Q Consensus 688 ~~-~~~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g----------~~~~~~i~~l~~~~~~~~~~~~a~~~~a~~~ 756 (864)
.. +.+..+..++.+.+..+..... .++.++.....+ .-.++.+..+++++++..++.++.++..+++
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL--~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVL--DVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHH--HHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 44 3344555666666665555544 334343221111 1134455555667777777777763333332
Q ss_pred HhccccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCcchhhhhhhhhhcChhhHHHHhhhhhc
Q 048757 757 LAQITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPGGQHSMHHTNLLQNVGAPRVLQSTAAAAI 836 (864)
Q Consensus 757 l~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 836 (864)
++......+...| +|++|+.+|++++.+++..|||||.++...+.. .....+.+.|+.+.|-++....+
T Consensus 639 -~~~d~~~avv~ag-------aIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~---~q~~~~v~~GaV~pL~~LL~~~d 707 (2102)
T PLN03200 639 -SRQDLCESLATDE-------IINPCIKLLTNNTEAVATQSARALAALSRSIKE---NRKVSYAAEDAIKPLIKLAKSSS 707 (2102)
T ss_pred -CChHHHHHHHHcC-------CHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCH---HHHHHHHHcCCHHHHHHHHhCCC
Confidence 2211222233444 899999999999999999999999999863332 22223456788888888776665
Q ss_pred cchhHHHHH
Q 048757 837 APVEAKIFA 845 (864)
Q Consensus 837 ~~~~~~~~~ 845 (864)
..+....+.
T Consensus 708 ~~v~e~Al~ 716 (2102)
T PLN03200 708 IEVAEQAVC 716 (2102)
T ss_pred hHHHHHHHH
Confidence 555444443
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=368.12 Aligned_cols=475 Identities=21% Similarity=0.201 Sum_probs=368.1
Q ss_pred HHHHH-hhc-HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHH
Q 048757 303 DDFWL-RQG-ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAK 380 (864)
Q Consensus 303 ~~~~~-~~g-v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~ 380 (864)
+.++. ..| ||.|+.+|.++++.+|..|+.+|.+++..++ .+..+...|++|+|+.+|++++++.++.|++
T Consensus 50 R~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~--------nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~ 121 (2102)
T PLN03200 50 RKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEED--------LRVKVLLGGCIPPLLSLLKSGSAEAQKAAAE 121 (2102)
T ss_pred HHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHH--------HHHHHHHcCChHHHHHHHHCCCHHHHHHHHH
Confidence 45554 245 9999999999999999999999999986543 4677888999999999999999999999999
Q ss_pred HHHHHhCC---chhH-HHHHhcCcHHHHHHHHccC---CHHHHHHHHHHHHHhcCCCCcHH-HHHhhCcHHHHHHHHccc
Q 048757 381 AIANLSVD---SKVA-KAVSENGGIDILADLARST---NRLVAEEVVGGLWNLSVGEDHKG-AIARAGGIKALVDLIFKW 452 (864)
Q Consensus 381 ~L~~L~~~---~~~~-~~i~~~g~i~~Lv~lL~~~---~~~v~~~a~~aL~~Ls~~~~~~~-~i~~~g~i~~L~~lL~~~ 452 (864)
+|.+|+.+ ++++ ..++..|++|+|+.++++. +..+++.++.+|.||+..++++. .+++.|+++.++.++.
T Consensus 122 AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs-- 199 (2102)
T PLN03200 122 AIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS-- 199 (2102)
T ss_pred HHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc--
Confidence 99999986 3445 4456899999999999876 34478888999999999888764 5689999999999997
Q ss_pred CCCCHHHHHHHHHHHHHhcCC-CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccCh
Q 048757 453 SSWNDGVLERAAGALANLAAD-DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGA 531 (864)
Q Consensus 453 ~~~~~~v~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~ 531 (864)
++++.++..|+.+|.+++.. ++.+..+++.|+||.|++++++++++.+|+.|+++|.+|+.+ +++++..+++.|+
T Consensus 200 -S~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~---s~e~r~~Iv~aGg 275 (2102)
T PLN03200 200 -SGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQ---SKEAKQAIADAGG 275 (2102)
T ss_pred -CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcC---CHHHHHHHHHCCC
Confidence 47889999999999999877 448888999999999999998766679999999999999986 6789999999999
Q ss_pred HHHHHHHhcCCC---------HHHHHHHHHHHHHhcCCh-h-----------hH--H-----------------------
Q 048757 532 LEALVQLTFSKH---------EGVRQEAAGALWNLSFDD-R-----------NR--E----------------------- 565 (864)
Q Consensus 532 i~~L~~lL~~~~---------~~v~~~a~~~L~~Ls~~~-~-----------~~--~----------------------- 565 (864)
++.|++++.+++ ..+++.|+++|.|++.+- . .| .
T Consensus 276 Ip~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~ 355 (2102)
T PLN03200 276 IPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAEST 355 (2102)
T ss_pred HHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhh
Confidence 999999998654 345899999999988741 0 00 0
Q ss_pred -------------------------------------------HHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 048757 566 -------------------------------------------AIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLS 602 (864)
Q Consensus 566 -------------------------------------------~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~ 602 (864)
.+.+.++++.|+.++.. .+.+++..++++|++++
T Consensus 356 ~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~---~~~evQ~~Av~aL~~L~ 432 (2102)
T PLN03200 356 RAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITM---ATADVQEELIRALSSLC 432 (2102)
T ss_pred hhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhcc---CCHHHHHHHHHHHHHHh
Confidence 01112333444444443 56789999999999999
Q ss_pred cC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHH
Q 048757 603 LS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALA 680 (864)
Q Consensus 603 ~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~a 680 (864)
.+ .+.+..+.+.|++++|+++|.++++.+++.|+++|++++. +.+++..|++.|++|.|+++|.+++ +.+|..|+|+
T Consensus 433 ~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~-~~iqeeAawA 511 (2102)
T PLN03200 433 CGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGS-QKAKEDSATV 511 (2102)
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHH
Confidence 76 7888999999999999999999999999999999999987 5567889999999999999999886 8899999999
Q ss_pred HHHhhcCCccc---e------eeecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChhhHHHHhhc
Q 048757 681 LAYIVDGRMED---I------ASIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQAFATALAS 751 (864)
Q Consensus 681 L~~l~~~~~~~---~------~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~~~~~a~~~ 751 (864)
|+|++.+..+. + ..+..++++.+..++..++ .++.++.......+. +.+..++.+.....+..+..
T Consensus 512 L~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa--~AL~nLi~~~d~~~I-~~Lv~LLlsdd~~~~~~aL~-- 586 (2102)
T PLN03200 512 LWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAA--KTLTKLVRTADAATI-SQLTALLLGDLPESKVHVLD-- 586 (2102)
T ss_pred HHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH--HHHHHHHhccchhHH-HHHHHHhcCCChhHHHHHHH--
Confidence 99999865421 1 1233367777666666665 666666554433222 22323333333222222222
Q ss_pred cchhHHhcc---ccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 048757 752 AVPKSLAQI---TEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTM 806 (864)
Q Consensus 752 ~a~~~l~~~---~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~ 806 (864)
++++. .....++..| .....|++.|+++|+++++..|+.|+|+|.++.-
T Consensus 587 ----vLgnIlsl~~~~d~~~~g--~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a 638 (2102)
T PLN03200 587 ----VLGHVLSVASLEDLVREG--SAANDALRTLIQLLSSSKEETQEKAASVLADIFS 638 (2102)
T ss_pred ----HHHHHHhhcchhHHHHHh--hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 33332 1121111111 0112389999999999999999999999988864
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-35 Score=286.78 Aligned_cols=364 Identities=26% Similarity=0.295 Sum_probs=335.3
Q ss_pred HhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 048757 307 LRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLS 386 (864)
Q Consensus 307 ~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~ 386 (864)
..+..+++..++++.++.++..+...++|++...++. -.++..+++++|+.-..++..++|..+++++++|+
T Consensus 83 sres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk--------~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLa 154 (550)
T KOG4224|consen 83 SRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENK--------GLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLA 154 (550)
T ss_pred hhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCc--------eEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhh
Confidence 3455677888999999999999999999999877643 45778899999998888888999999999999999
Q ss_pred CCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHH
Q 048757 387 VDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGA 466 (864)
Q Consensus 387 ~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~ 466 (864)
..++++..+...|++.++.++-++.+..+|.++.++|.|+....++|..++..|++|.|+.++. +++..++..+..+
T Consensus 155 T~d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~---s~d~dvqyyctta 231 (550)
T KOG4224|consen 155 TFDSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK---SGDLDVQYYCTTA 231 (550)
T ss_pred ccccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc---cCChhHHHHHHHH
Confidence 9999999999999999999988999999999999999999999999999999999999999996 6899999999999
Q ss_pred HHHhcCCCcchHHHHhcC--cHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCH
Q 048757 467 LANLAADDKCSLEVARAG--GVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHE 544 (864)
Q Consensus 467 L~~L~~~~~~~~~i~~~~--~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 544 (864)
+++++.+...++.+.+.+ .++.|+.+++++ ++.++..|..||++|++ ..+.+..+.+.|++|.++++++++..
T Consensus 232 isnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlas----dt~Yq~eiv~ag~lP~lv~Llqs~~~ 306 (550)
T KOG4224|consen 232 ISNIAVDRRARKILAQAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLAS----DTEYQREIVEAGSLPLLVELLQSPMG 306 (550)
T ss_pred hhhhhhhHHHHHHHHhcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcc----cchhhhHHHhcCCchHHHHHHhCcch
Confidence 999999998999998877 899999999996 58899999999999998 55677888999999999999999888
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHH
Q 048757 545 GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIAL 623 (864)
Q Consensus 545 ~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~l 623 (864)
....+.+.+++|++.++-+...|++.|++.+|+++|.. ..+++++.+|..+|++|+.+ +.++..|.+.|++|.++.+
T Consensus 307 plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~--~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL 384 (550)
T KOG4224|consen 307 PLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRA--GDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIEL 384 (550)
T ss_pred hHHHHHHHHHhhcccccCcccceecccchhHHHHHHhc--CCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHH
Confidence 88888999999999999999999999999999999996 46778999999999999985 8899999999999999999
Q ss_pred HccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 624 ARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 624 L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+.+++-.++.....++..|+.+...+..+.+.|.++.|+.++.+.. .++|-+||.||.|+..+..
T Consensus 385 ~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 385 LLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSES-EEVRGNAAAALINLSSDVE 449 (550)
T ss_pred HhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccc-hhhcccHHHHHHhhhhhhH
Confidence 9999999999999999999999999999999999999999998875 8899999999998876543
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=270.35 Aligned_cols=365 Identities=25% Similarity=0.282 Sum_probs=329.6
Q ss_pred HHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 048757 306 WLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANL 385 (864)
Q Consensus 306 ~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 385 (864)
+.-.|++.|+.-+.++..++|..+..++.+|+..++ .+..+...|++.++.++-++.+..+|..+..+|.++
T Consensus 123 v~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~--------nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnm 194 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDS--------NKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNM 194 (550)
T ss_pred EeccChHHHHHHhcCCCcEEEeeehhhhhhhhcccc--------chhhhhhccchhhhHhhcccchhhHHHHHHHHHHHh
Confidence 455778888877778888999999999999998765 357799999999999988999999999999999999
Q ss_pred hCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhC--cHHHHHHHHcccCCCCHHHHHHH
Q 048757 386 SVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAG--GIKALVDLIFKWSSWNDGVLERA 463 (864)
Q Consensus 386 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~~~v~~~a 463 (864)
+...++|+.++..|++|.|+.++++.++.+|++|+.++++++.+..+|..+++.+ .++.|++++. ++++.++..|
T Consensus 195 Ths~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd---~~s~kvkcqA 271 (550)
T KOG4224|consen 195 THSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMD---DGSDKVKCQA 271 (550)
T ss_pred hhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHh---CCChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888 9999999997 5888999999
Q ss_pred HHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC-
Q 048757 464 AGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK- 542 (864)
Q Consensus 464 ~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~- 542 (864)
..+|++++.+.+.+..+.+.|++|.++++++++. -........+++|++.+ +-+...+.+.|.+.+|+++|...
T Consensus 272 ~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrnisih----plNe~lI~dagfl~pLVrlL~~~d 346 (550)
T KOG4224|consen 272 GLALRNLASDTEYQREIVEAGSLPLLVELLQSPM-GPLILASVACIRNISIH----PLNEVLIADAGFLRPLVRLLRAGD 346 (550)
T ss_pred HHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhhcccc----cCcccceecccchhHHHHHHhcCC
Confidence 9999999999999999999999999999998854 44456677899999984 56778899999999999999976
Q ss_pred CHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHH
Q 048757 543 HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLI 621 (864)
Q Consensus 543 ~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv 621 (864)
+++++-.|..+||||+.+ ..++..|.+.|+|+.++.++.+ ++-++|...-.++..|+-++..+..+.+.|.++.|+
T Consensus 347 nEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD---~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLI 423 (550)
T KOG4224|consen 347 NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD---GPVSVQSEISACIAQLALNDNDKEALLDSGIIPILI 423 (550)
T ss_pred chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc---CChhHHHHHHHHHHHHHhccccHHHHhhcCCcceee
Confidence 456999999999999995 7789999999999999999998 889999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCcccHHHHHh------CCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcc
Q 048757 622 ALARSAVVDVHETAAGALWNLAFNPGNALCIVE------GGGVQALIHLCSSSLSKMARFMAALALAYIVDGRME 690 (864)
Q Consensus 622 ~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~------~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~ 690 (864)
.+..+.+++|+.+|+.+|.||+.+.++-.++++ .|.-..|++++.+.+ -..+..|.|++-++......
T Consensus 424 p~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L~Rfl~S~~-~tf~hia~wTI~qLle~h~~ 497 (550)
T KOG4224|consen 424 PWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRLARFLASHE-LTFRHIARWTIQQLLEDHDL 497 (550)
T ss_pred cccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999998888777775 344556889998875 78999999999988877653
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.2e-29 Score=264.97 Aligned_cols=360 Identities=24% Similarity=0.258 Sum_probs=307.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhC-C
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSV-D 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~-~ 388 (864)
.+.++..+.++++..+..+...+..+....... ....+...|.+|.++..|. +.++.++..|+|+|.|++. +
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~p------pi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt 141 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNP------PIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT 141 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCC------CHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc
Confidence 678888999999999999999999987666532 2345666699999999997 4669999999999999999 6
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
.+....+++.|++|.++.++.+++..+++.|.++|+|++. ++..|..+.+.|++++|+.++.. +......+.++++|
T Consensus 142 se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~--~~~~~~lRn~tW~L 219 (514)
T KOG0166|consen 142 SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK--SDKLSMLRNATWTL 219 (514)
T ss_pred hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc--ccchHHHHHHHHHH
Confidence 6888889999999999999999999999999999999987 56789999999999999999975 23346788999999
Q ss_pred HHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHH
Q 048757 468 ANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGV 546 (864)
Q Consensus 468 ~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 546 (864)
.|+|+... ....-.-...+|.|..++.+ +++++...|+||+.+|+.+ ..+...++++.|+++.|+.+|.+.+..+
T Consensus 220 sNlcrgk~P~P~~~~v~~iLp~L~~ll~~-~D~~Vl~Da~WAlsyLsdg---~ne~iq~vi~~gvv~~LV~lL~~~~~~v 295 (514)
T KOG0166|consen 220 SNLCRGKNPSPPFDVVAPILPALLRLLHS-TDEEVLTDACWALSYLTDG---SNEKIQMVIDAGVVPRLVDLLGHSSPKV 295 (514)
T ss_pred HHHHcCCCCCCcHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcC---ChHHHHHHHHccchHHHHHHHcCCCccc
Confidence 99999864 32223345679999999998 5699999999999999976 5577788999999999999999999999
Q ss_pred HHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHH
Q 048757 547 RQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALA 624 (864)
Q Consensus 547 ~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL 624 (864)
+..|++++.|++.. +...+.+++.|+++.|..++.. ++...++..|+|++.|++.. ++..+.+.+.|.+|.|+.+|
T Consensus 296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~--s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l 373 (514)
T KOG0166|consen 296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSS--SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL 373 (514)
T ss_pred ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhcc--CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH
Confidence 99999999999887 4557888999999999999995 36666999999999999987 56778899999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhcC--CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 625 RSAVVDVHETAAGALWNLAF--NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 625 ~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
++.+.+++..|+|++.|++. +++.-..+++.|.|++|+.+|.-.+.. +-..+..++.++.
T Consensus 374 ~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~-ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 374 QTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVK-IILVALDGLENIL 435 (514)
T ss_pred hccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChH-HHHHHHHHHHHHH
Confidence 99999999999999999988 444455889999999999999776633 4444556666553
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.7e-28 Score=257.01 Aligned_cols=375 Identities=23% Similarity=0.254 Sum_probs=316.4
Q ss_pred hhCCchhHHHHHhhcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHH
Q 048757 296 KKNPKEFDDFWLRQGATLLLSLME-SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGL 374 (864)
Q Consensus 296 ~~~~~~~~~~~~~~gv~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~ 374 (864)
+.+ +........|.||.+++.|. +.++.+|..|+++|.+++.++.+. .+.+.+.|++|.++.++.+++..+
T Consensus 97 ~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~-------T~~vv~agavp~fi~Ll~s~~~~v 168 (514)
T KOG0166|consen 97 ERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ-------TKVVVDAGAVPIFIQLLSSPSADV 168 (514)
T ss_pred CCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh-------ccccccCCchHHHHHHhcCCcHHH
Confidence 344 34444444444999999997 456999999999999999988765 467899999999999999999999
Q ss_pred HHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHHccCCH-HHHHHHHHHHHHhcCCCCcHHHH-HhhCcHHHHHHHHcc
Q 048757 375 QSEVAKAIANLSVD-SKVAKAVSENGGIDILADLARSTNR-LVAEEVVGGLWNLSVGEDHKGAI-ARAGGIKALVDLIFK 451 (864)
Q Consensus 375 ~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~Ls~~~~~~~~i-~~~g~i~~L~~lL~~ 451 (864)
++.|+++|+|++.+ +..|..+.+.|++++|+.++...++ ...+.++++|.|+|.++.-...+ .-..++|.|..++.
T Consensus 169 ~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~- 247 (514)
T KOG0166|consen 169 REQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLH- 247 (514)
T ss_pred HHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHh-
Confidence 99999999999995 6899999999999999999987765 78899999999999865322222 23347899999996
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCC-cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccC
Q 048757 452 WSSWNDGVLERAAGALANLAADD-KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETG 530 (864)
Q Consensus 452 ~~~~~~~v~~~a~~~L~~L~~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~ 530 (864)
+.++++...|++++++|+... +..+.+++.|+++.|+.+|... ...++..|++++.|+... ++...+.++..|
T Consensus 248 --~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG---~d~QTq~vi~~~ 321 (514)
T KOG0166|consen 248 --STDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTG---SDEQTQVVINSG 321 (514)
T ss_pred --cCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeec---cHHHHHHHHhcC
Confidence 588999999999999999765 4677888999999999999985 577889999999999886 667888999999
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--ch
Q 048757 531 ALEALVQLTF-SKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS--EA 606 (864)
Q Consensus 531 ~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~~ 606 (864)
+++.|..++. ++...++.+|+++|.|++.. .+..+.+++.|.+|.|+.+|.+ .+-.+|..|+|++.|++.+ ++
T Consensus 322 ~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~---~ef~~rKEAawaIsN~ts~g~~~ 398 (514)
T KOG0166|consen 322 ALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQT---AEFDIRKEAAWAISNLTSSGTPE 398 (514)
T ss_pred hHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhc---cchHHHHHHHHHHHhhcccCCHH
Confidence 9999999998 55666999999999999887 5678899999999999999997 8899999999999999976 44
Q ss_pred hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC------C---cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHH
Q 048757 607 NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF------N---PGNALCIVEGGGVQALIHLCSSSLSKMARFMA 677 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~------~---~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~a 677 (864)
.-..+++.|.+++++.+|.-.+..+...+..+|.++.. . .+....|-+.||+..+-.|-.+.+ ..+...|
T Consensus 399 qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen-~~Iy~~A 477 (514)
T KOG0166|consen 399 QIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHEN-EEIYKKA 477 (514)
T ss_pred HHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhcccc-HHHHHHH
Confidence 45678899999999999988888888889999998864 1 234567888999988887777765 7888888
Q ss_pred HHHHHHhhcCCc
Q 048757 678 ALALAYIVDGRM 689 (864)
Q Consensus 678 a~aL~~l~~~~~ 689 (864)
...+........
T Consensus 478 ~~II~~yf~~e~ 489 (514)
T KOG0166|consen 478 YKIIDTYFSEED 489 (514)
T ss_pred HHHHHHhcCCCc
Confidence 888887766553
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=3.7e-27 Score=229.85 Aligned_cols=368 Identities=21% Similarity=0.207 Sum_probs=302.0
Q ss_pred CCchhHHHHHhhcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHH
Q 048757 298 NPKEFDDFWLRQGATLLLSLME-SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQS 376 (864)
Q Consensus 298 ~~~~~~~~~~~~gv~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~ 376 (864)
..+..+..+..|-||.++++|. +..+-.+.+|+++|.|++.+.... .+.+++.|++|.++++|.+++.++++
T Consensus 103 ~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q-------TkvVvd~~AVPlfiqlL~s~~~~V~e 175 (526)
T COG5064 103 TSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ-------TKVVVDAGAVPLFIQLLSSTEDDVRE 175 (526)
T ss_pred cCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc-------eEEEEeCCchHHHHHHHcCchHHHHH
Confidence 3344455454444999999994 555667899999999999887654 24588999999999999999999999
Q ss_pred HHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHHccCCH--HHHHHHHHHHHHhcCC--C-CcHHHHHhhCcHHHHHHHHc
Q 048757 377 EVAKAIANLSVD-SKVAKAVSENGGIDILADLARSTNR--LVAEEVVGGLWNLSVG--E-DHKGAIARAGGIKALVDLIF 450 (864)
Q Consensus 377 ~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~a~~aL~~Ls~~--~-~~~~~i~~~g~i~~L~~lL~ 450 (864)
+++|+|+|++.+ +.+|..+.+.|++++++.++.++-. .+.+.+.++|.||+.. | ..-..+.. ++|.|.+++.
T Consensus 176 QavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq--alpiL~KLiy 253 (526)
T COG5064 176 QAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ--ALPILAKLIY 253 (526)
T ss_pred HHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH--HHHHHHHHHh
Confidence 999999999996 5688888999999999999976644 7889999999999873 2 33444444 7899999997
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhcc
Q 048757 451 KWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLET 529 (864)
Q Consensus 451 ~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~ 529 (864)
+.++++...|++++.+|+..+. ....+.+.|..+.|+++|.++ +..++.-|++.+.|+... ++..-+.++..
T Consensus 254 ---s~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPalR~vGNIVTG---~D~QTqviI~~ 326 (526)
T COG5064 254 ---SRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPALRSVGNIVTG---SDDQTQVIINC 326 (526)
T ss_pred ---hcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHHHhhcCeeec---Cccceehheec
Confidence 4889999999999999998764 678889999999999999985 578899999999999886 55677888999
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC----
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS---- 604 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~---- 604 (864)
|+++.+..+|.++...+|.+|+++|.|+... .+..+.+++.+.+|+|+.+|.. .+-.++..|+|++.|....
T Consensus 327 G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~---ae~k~kKEACWAisNatsgg~~~ 403 (526)
T COG5064 327 GALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSS---AEYKIKKEACWAISNATSGGLNR 403 (526)
T ss_pred ccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHH---HHHHHHHHHHHHHHhhhccccCC
Confidence 9999999999999999999999999999876 5678889999999999999997 8889999999999999864
Q ss_pred chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--------Ccc---cHHHHH-hCCcHHHHHHHhcCCCcHH
Q 048757 605 EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF--------NPG---NALCIV-EGGGVQALIHLCSSSLSKM 672 (864)
Q Consensus 605 ~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--------~~~---~~~~i~-~~g~v~~L~~ll~~~~~~~ 672 (864)
|+.-..+++.|++++|..+|.-.+..+-+.++-++.|+.. +.+ .-...+ +.||+..+-.+-.+.+ ..
T Consensus 404 PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n-~~ 482 (526)
T COG5064 404 PDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVN-RT 482 (526)
T ss_pred chHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccc-cH
Confidence 5666778899999999999987776666667777776643 122 223344 4889988888887776 55
Q ss_pred HHHHHHHHHHHhh
Q 048757 673 ARFMAALALAYIV 685 (864)
Q Consensus 673 ~r~~aa~aL~~l~ 685 (864)
+-..|-..+-.++
T Consensus 483 iy~KAYsIIe~fF 495 (526)
T COG5064 483 IYDKAYSIIEKFF 495 (526)
T ss_pred HHHHHHHHHHHHc
Confidence 6666666655443
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.96 E-value=6.6e-28 Score=235.03 Aligned_cols=361 Identities=21% Similarity=0.226 Sum_probs=300.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSVD- 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~~- 388 (864)
.|.|.+-|.++|-+.+..|..-...+....+.. -.+.+.+.|++|.++++++ ....-.+.+|+|+|.|++..
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~P------PIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt 146 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSP------PIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT 146 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCC------CchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc
Confidence 688999999999999999999888876544432 2467899999999999995 46667888999999999984
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
......+++.|++|.++++|.+.+.+|++.+.++|+|++.+ +..|..+.+.|++.+++.++.+ +..+..+.+.+.++|
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~s-s~~~ismlRn~TWtL 225 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLS-SAIHISMLRNATWTL 225 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHh-ccchHHHHHHhHHHH
Confidence 45556688999999999999999999999999999999874 5678888999999999999985 234457888999999
Q ss_pred HHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHH
Q 048757 468 ANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGV 546 (864)
Q Consensus 468 ~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 546 (864)
.||++... ....-.-...+|.|.+++-+. ++++...|+||+.+|+.. ..+....+.+.|..+.|+++|.+++..+
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KLiys~-D~evlvDA~WAiSYlsDg---~~E~i~avld~g~~~RLvElLs~~sa~i 301 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKLIYSR-DPEVLVDACWAISYLSDG---PNEKIQAVLDVGIPGRLVELLSHESAKI 301 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccC---cHHHHHHHHhcCCcHHHHHHhcCccccc
Confidence 99998743 222222345689999999884 699999999999999975 4566788899999999999999999999
Q ss_pred HHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHH
Q 048757 547 RQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALA 624 (864)
Q Consensus 547 ~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL 624 (864)
+..|.+.++|+... +...+.+++.|+++.+..+|.+ +.+.+|..|+|++.|+... .+..+.+.+.+.+|+|+.+|
T Consensus 302 qtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~---~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll 378 (526)
T COG5064 302 QTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSS---PKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378 (526)
T ss_pred cCHHHHhhcCeeecCccceehheecccHHHHHHHhcC---hhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence 99999999999887 4557788999999999999986 7789999999999999876 56667889999999999999
Q ss_pred ccCCHHHHHHHHHHHHHhcCC----cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 625 RSAVVDVHETAAGALWNLAFN----PGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 625 ~~~~~~v~~~a~~aL~~L~~~----~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
.+.+-.++..|+||+.|.... |+.-.-+++.|.|.+|+.+|.-.++..+ ..+.-++.|+-.
T Consensus 379 s~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii-ev~LD~~eniLk 443 (526)
T COG5064 379 SSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII-EVALDAIENILK 443 (526)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch-hhhHHHHHHHHh
Confidence 999999999999999999873 4444577889999999999977654322 334455554433
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.93 E-value=3.1e-23 Score=233.62 Aligned_cols=384 Identities=18% Similarity=0.185 Sum_probs=321.0
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHH
Q 048757 282 WIERVLSHSLMRISKKNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVR 361 (864)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~ 361 (864)
.++......++.+ ..+...-.++..+++|+.|+++|++.+.++...+..+|.+|+...+ .+..|.+.|+++
T Consensus 264 qLlrv~~~lLlNL-Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E--------NK~~m~~~giV~ 334 (708)
T PF05804_consen 264 QLLRVAFYLLLNL-AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE--------NKDEMAESGIVE 334 (708)
T ss_pred HHHHHHHHHHHHH-hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH--------HHHHHHHcCCHH
Confidence 3334334445554 4455555666666779999999999999999999999999986664 468899999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCc
Q 048757 362 LLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGG 441 (864)
Q Consensus 362 ~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~ 441 (864)
.|++++++++.+++..++++|.||+.+++.|..+++.|.+|.|+.+|.++ ..+..++.+|.++|.+++.+..+...++
T Consensus 335 kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~Tdc 412 (708)
T PF05804_consen 335 KLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDC 412 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcch
Confidence 99999999999999999999999999999999999999999999999854 4567799999999999999999999999
Q ss_pred HHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcc
Q 048757 442 IKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSN 521 (864)
Q Consensus 442 i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~ 521 (864)
+|.+++++.. .+++.+...++..+.|++.+..+.+.+.+.++++.|++..-...++ .....++|++.++ +.
T Consensus 413 Ip~L~~~Ll~--~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~---~~ 483 (708)
T PF05804_consen 413 IPQLMQMLLE--NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHD---GP 483 (708)
T ss_pred HHHHHHHHHh--CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcC---ch
Confidence 9999998875 3455666778899999999999888999999999999988764432 3457899999973 23
Q ss_pred cchhhhccChHHHHHHHhcC-CCHHHHHHHHHHHHHhcCChhhHHHH-HHCCChHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048757 522 NAAVGLETGALEALVQLTFS-KHEGVRQEAAGALWNLSFDDRNREAI-AAAGGVEALVALVRSCSSSSQGLQERAAGALW 599 (864)
Q Consensus 522 ~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~Ls~~~~~~~~i-~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~ 599 (864)
.+..+. +.+..|+..+.. .+++...++.++|+||+..+.....+ .+.+.+|.|.+.|... ...+++...++..++
T Consensus 484 ~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g-~~~dDl~LE~Vi~~g 560 (708)
T PF05804_consen 484 LKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPG-ASEDDLLLEVVILLG 560 (708)
T ss_pred HHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCC-CCChHHHHHHHHHHH
Confidence 444443 578888888766 46789999999999998876554444 4679999999999862 345678999999999
Q ss_pred HhccCchhhHHhhhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCcccHHHHHh-CCcHHHHHHHhcCCCcHHHHHH
Q 048757 600 GLSLSEANSIAIGREGGVAPLIALARS--AVVDVHETAAGALWNLAFNPGNALCIVE-GGGVQALIHLCSSSLSKMARFM 676 (864)
Q Consensus 600 ~L~~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~L~~~~~~~~~i~~-~g~v~~L~~ll~~~~~~~~r~~ 676 (864)
.++.++.....+.+.|.++.|+.+|++ +|.+...+.+.++++|..+++.+..+.+ .+++..|++++++.+ +.+|..
T Consensus 561 tla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N-~~ir~~ 639 (708)
T PF05804_consen 561 TLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKN-AEIRKV 639 (708)
T ss_pred HHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCC-HHHHHH
Confidence 999999999999999999999999975 5688999999999999999999987755 778888999999997 889999
Q ss_pred HHHHHHHhhcCCc
Q 048757 677 AALALAYIVDGRM 689 (864)
Q Consensus 677 aa~aL~~l~~~~~ 689 (864)
+-.+|.-+++.++
T Consensus 640 ~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 640 CDNALDIIAEYDE 652 (708)
T ss_pred HHHHHHHHHHhCH
Confidence 9999988877765
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.92 E-value=1.8e-22 Score=227.44 Aligned_cols=339 Identities=21% Similarity=0.181 Sum_probs=286.9
Q ss_pred CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcH
Q 048757 322 QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGI 401 (864)
Q Consensus 322 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i 401 (864)
++.+...|...|.||+.+.. ....+...|+++.|+.+|++++.++...++..|.+|+...+++..+.+.|++
T Consensus 262 QeqLlrv~~~lLlNLAed~~--------ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV 333 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDPR--------VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIV 333 (708)
T ss_pred HHHHHHHHHHHHHHHhcChH--------HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 45566688888999985443 5677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHH
Q 048757 402 DILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVA 481 (864)
Q Consensus 402 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~ 481 (864)
+.|++++.+++..++..++++|.|||.+++.|..|++.|.+|.|+.+|.+ +..+..+..+|.+++.+++++..+.
T Consensus 334 ~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d-----~~~~~val~iLy~LS~dd~~r~~f~ 408 (708)
T PF05804_consen 334 EKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD-----PNFREVALKILYNLSMDDEARSMFA 408 (708)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC-----CchHHHHHHHHHHhccCHhhHHHHh
Confidence 99999999999999999999999999999999999999999999999963 3456679999999999999999999
Q ss_pred hcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHH-hcCCCHHHHHHHHHHHHHhcCC
Q 048757 482 RAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL-TFSKHEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 482 ~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~Ls~~ 560 (864)
..+++|.+++++-.++.+.+...++..+.||+. ++.+.+.+.+.++++.|++. ++..++- .+..++|+|.+
T Consensus 409 ~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~----~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h 480 (708)
T PF05804_consen 409 YTDCIPQLMQMLLENSEEEVQLELIALLINLAL----NKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQH 480 (708)
T ss_pred hcchHHHHHHHHHhCCCccccHHHHHHHHHHhc----CHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhc
Confidence 999999999998877677788889999999998 66778888888999999977 5555543 35789999999
Q ss_pred h-hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc-hhhHHhhhcCCHHHHHHHHccC--CHHHHHHHH
Q 048757 561 D-RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE-ANSIAIGREGGVAPLIALARSA--VVDVHETAA 636 (864)
Q Consensus 561 ~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~-~~~~~i~~~~~i~~Lv~lL~~~--~~~v~~~a~ 636 (864)
+ ..+..+. +.+..|+.++.. ..+++....++++|+||...+ +....+.+.+.+|.|.++|..+ .+++...++
T Consensus 481 ~~~~k~~f~--~~i~~L~~~v~~--~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V 556 (708)
T PF05804_consen 481 DGPLKELFV--DFIGDLAKIVSS--GDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV 556 (708)
T ss_pred CchHHHHHH--HHHHHHHHHhhc--CCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH
Confidence 7 4454443 478899999886 458899999999999999764 4445555689999999999754 367888999
Q ss_pred HHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCC-cHHHHHHHHHHHHHhh
Q 048757 637 GALWNLAFNPGNALCIVEGGGVQALIHLCSSSL-SKMARFMAALALAYIV 685 (864)
Q Consensus 637 ~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~-~~~~r~~aa~aL~~l~ 685 (864)
-.++.++.++.....+.+.|.++.|++++.... +.+.-.+.+.++.++.
T Consensus 557 i~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll 606 (708)
T PF05804_consen 557 ILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLL 606 (708)
T ss_pred HHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997643 2344444555554443
No 11
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.87 E-value=3.8e-23 Score=209.26 Aligned_cols=221 Identities=22% Similarity=0.329 Sum_probs=201.7
Q ss_pred CccCCCCCCeecCCCCCCCHH--HHHHHHhcCCC-CcEEEecCCCCch--H--HHHhCCcccceeeeecCCCCCHHHHHH
Q 048757 2 LGSSPCLWSSLDLRPYKFDTS--AAESLSSRCTN-LQALWFRGALSAD--A--MIILQARRLREINVEFCRELTDAIFSA 74 (864)
Q Consensus 2 l~~~p~lw~~ldL~~~~~~~~--~l~~i~~~~~~-L~~L~l~~~~~~~--~--l~~~~~~~L~~L~l~~c~~l~d~~l~~ 74 (864)
++.|...|+++||+....|.+ ++..+.++|.. |+.|+++||..+. . ....+|||+++|++.+|..+||..+..
T Consensus 105 ~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s 184 (483)
T KOG4341|consen 105 LALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS 184 (483)
T ss_pred hhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH
Confidence 467889999999999877654 78899999987 9999999998763 2 333499999999999999999999999
Q ss_pred HHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc-
Q 048757 75 IVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE- 153 (864)
Q Consensus 75 l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~- 153 (864)
+++.|++|++|++ ..|..+|+..++.++..||+|++|++++|+.++..++..+.++|.+|+.+.+.||....+..+.
T Consensus 185 la~~C~~l~~l~L--~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~ 262 (483)
T KOG4341|consen 185 LARYCRKLRHLNL--HSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLK 262 (483)
T ss_pred HHHhcchhhhhhh--cccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHH
Confidence 9999999999999 7899999999999999999999999999999999999999999999999999999999998887
Q ss_pred ---CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC-CCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 154 ---NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR-TNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 154 ---~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
+|+.+..+++..|..+||..+..+..+|..|+.++.++ ++++...+..+-.++++|+++-+.+|..+++..
T Consensus 263 ~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 263 AAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred HhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 78888899999999999999988988999999999999 888888888888888999999999999988876
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.87 E-value=6.1e-20 Score=201.36 Aligned_cols=367 Identities=24% Similarity=0.260 Sum_probs=291.0
Q ss_pred HHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 048757 306 WLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANL 385 (864)
Q Consensus 306 ~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 385 (864)
|..--+|..+.||.+.++.+|-.|+..+..+++++.+ .+..+...|+|+.|+.+|++.+.+|+..|+++|.||
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~-------ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNL 302 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNK-------IKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNL 302 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHH-------HHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhh
Confidence 5445578899999999999999999999999998865 467899999999999999999999999999999999
Q ss_pred hCC---chhHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCC-------
Q 048757 386 SVD---SKVAKAVSENGGIDILADLARS-TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSS------- 454 (864)
Q Consensus 386 ~~~---~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~------- 454 (864)
... .+++..|.+.+||+.++++|+. .|.++++.+.++||||++++..+..++.. ++..|.+-+-..++
T Consensus 303 vf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~ 381 (717)
T KOG1048|consen 303 VFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPA 381 (717)
T ss_pred hcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCc
Confidence 983 3689999999999999999975 79999999999999999997777777665 56666655433222
Q ss_pred C----CHHHHHHHHHHHHHhcCC-CcchHHHHhc-CcHHHHHHHHHcc-----CchhHHHHHHHHHHHHhhcCCC-----
Q 048757 455 W----NDGVLERAAGALANLAAD-DKCSLEVARA-GGVHALVMLARSF-----MFEGVQEQAARALANLVAHGDS----- 518 (864)
Q Consensus 455 ~----~~~v~~~a~~~L~~L~~~-~~~~~~i~~~-~~i~~Lv~ll~~~-----~~~~v~~~a~~aL~~L~~~~~~----- 518 (864)
. +.++..++++||+|++.. .+.++.+.+. |.|..|+..++.. .+...-+++...|+||+..-+.
T Consensus 382 ~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~ 461 (717)
T KOG1048|consen 382 PRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPK 461 (717)
T ss_pred ccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHh
Confidence 1 246778999999999985 5588888865 5699999888632 2234467899999998753110
Q ss_pred ---------------C---------cccch---------------------hhhccChHHHHHHHhc-CCCHHHHHHHHH
Q 048757 519 ---------------N---------SNNAA---------------------VGLETGALEALVQLTF-SKHEGVRQEAAG 552 (864)
Q Consensus 519 ---------------~---------~~~~~---------------------~~~~~~~i~~L~~lL~-~~~~~v~~~a~~ 552 (864)
. ...++ .+....+|..-..++. +.+..+.+++++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaG 541 (717)
T KOG1048|consen 462 YRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAG 541 (717)
T ss_pred hhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhh
Confidence 0 00000 1222234444333333 457889999999
Q ss_pred HHHHhcCCh-----hhHHHH-HHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc
Q 048757 553 ALWNLSFDD-----RNREAI-AAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS 626 (864)
Q Consensus 553 ~L~~Ls~~~-----~~~~~i-~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~ 626 (864)
+|-|++... ..+..+ ....+.++|+++|.. +++.+...++.+|.||+.+..++..|+ .++++.|++.|.+
T Consensus 542 aLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~---~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~ 617 (717)
T KOG1048|consen 542 ALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRN---DDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPG 617 (717)
T ss_pred hHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhc---CCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcC
Confidence 999998853 235555 668899999999997 899999999999999999999999988 7899999999975
Q ss_pred CC------HHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 048757 627 AV------VDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYI 684 (864)
Q Consensus 627 ~~------~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l 684 (864)
.. +++...++.+|.++.. +..+...+.+.++++.|+.+..+..++.+-..|...|..|
T Consensus 618 ~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~l 682 (717)
T KOG1048|consen 618 SGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVL 682 (717)
T ss_pred CCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 33 6889999999999984 8889999999999999999999977765555555555433
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.83 E-value=3.8e-19 Score=195.21 Aligned_cols=325 Identities=25% Similarity=0.259 Sum_probs=257.4
Q ss_pred hCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCCc
Q 048757 357 HGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV---GEDH 432 (864)
Q Consensus 357 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~---~~~~ 432 (864)
.--+|..+.+|.+.++.+|..|+..+.+++. +.+.+..+.+.|||+.|+.++++.+.+|+..|+++|.||.. +.++
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 4456778889999999999999999999999 67899999999999999999999999999999999999977 3468
Q ss_pred HHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc-------C------ch
Q 048757 433 KGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSF-------M------FE 499 (864)
Q Consensus 433 ~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~-------~------~~ 499 (864)
+-.|.+.++|+.++++++. ..+.++++.++++||||+..+..+..++. .++..|...+-.+ + ..
T Consensus 312 Klai~~~~Gv~~l~~~Lr~--t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRH--TQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred chhhhhcCChHHHHHHHHh--hcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccc
Confidence 9999999999999999985 67899999999999999999777666554 3455555544221 1 24
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC------CCHHHHHHHHHHHHHhcCChh------h----
Q 048757 500 GVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS------KHEGVRQEAAGALWNLSFDDR------N---- 563 (864)
Q Consensus 500 ~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~Ls~~~~------~---- 563 (864)
++-.++.++|+|+++.+ .+..+++....|.|+.|+..+++ .+..-.++++.+++||+..-+ .
T Consensus 389 ~vf~n~tgcLRNlSs~~--~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~ 466 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAG--QEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVL 466 (717)
T ss_pred eeeehhhhhhccccchh--HHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHh
Confidence 56778999999999852 33344455567889999988763 356678899999999965321 0
Q ss_pred -----------------------HHH---------------------HHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048757 564 -----------------------REA---------------------IAAAGGVEALVALVRSCSSSSQGLQERAAGALW 599 (864)
Q Consensus 564 -----------------------~~~---------------------i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~ 599 (864)
+.. +....+|.+-+.+|.. +.++.+.++++++|-
T Consensus 467 ~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~--s~n~~TlEasaGaLQ 544 (717)
T KOG1048|consen 467 ANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL--SKNDNTLEASAGALQ 544 (717)
T ss_pred hcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH--hcchHHHHHhhhhHh
Confidence 010 0001134444555654 468899999999999
Q ss_pred HhccC-----chhhHHh-hhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCc---
Q 048757 600 GLSLS-----EANSIAI-GREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLS--- 670 (864)
Q Consensus 600 ~L~~~-----~~~~~~i-~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~--- 670 (864)
|++.. ...+..+ .++.++++|+++|+.+++.|...++.+|+||+.++.+++.|. .++++-|++.|.++..
T Consensus 545 NltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~ 623 (717)
T KOG1048|consen 545 NLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTS 623 (717)
T ss_pred hhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcC
Confidence 99864 3445555 789999999999999999999999999999999999999888 6999999999987664
Q ss_pred --HHHHHHHHHHHHHhhcCCc
Q 048757 671 --KMARFMAALALAYIVDGRM 689 (864)
Q Consensus 671 --~~~r~~aa~aL~~l~~~~~ 689 (864)
+++-..+..+|.++...+.
T Consensus 624 ~sedtv~~vc~tl~niv~~~~ 644 (717)
T KOG1048|consen 624 LSEDTVRAVCHTLNNIVRKNV 644 (717)
T ss_pred chHHHHHHHHHhHHHHHHHhH
Confidence 5666667777877765544
No 14
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.80 E-value=2.5e-17 Score=166.58 Aligned_cols=462 Identities=18% Similarity=0.132 Sum_probs=328.3
Q ss_pred ccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHh
Q 048757 319 ESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVSE 397 (864)
Q Consensus 319 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~ 397 (864)
...+..++..+..++...+....+. ...+..-++++.++.|.+...+++.++-.++.++|+|++. +.++|..+.+
T Consensus 52 ~~~~~tv~~~qssC~A~~sk~ev~r----~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~ 127 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSKNEVER----SLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFN 127 (604)
T ss_pred eeccchhhhhhHHHHHHHhhhHHHH----HHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHh
Confidence 3455677788888888766332211 0111223567888889998889999999999999999999 5699999999
Q ss_pred cCcHHHHHHHHcc----CC---HHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 048757 398 NGGIDILADLARS----TN---RLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALAN 469 (864)
Q Consensus 398 ~g~i~~Lv~lL~~----~~---~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~ 469 (864)
.||-+.++++|+. .+ .+....+.+.|.|..- +++.+.++++.|+++.|...+.- +-.+....+.......|
T Consensus 128 lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I-~~qNaa~~e~ll~~f~n 206 (604)
T KOG4500|consen 128 LGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWI-DWQNAALTEKLLAPFFN 206 (604)
T ss_pred cCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhc-ccccHHHHHHHHhcccc
Confidence 9997777777752 22 3455667778888765 66789999999999999988854 23455555555555555
Q ss_pred hcCC-Cc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC-CC---
Q 048757 470 LAAD-DK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS-KH--- 543 (864)
Q Consensus 470 L~~~-~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~--- 543 (864)
+..- .+ ......+......+++++.+...+++++.+...|+..+. ++..+..+.+.|.+..++++++. ++
T Consensus 207 lls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~ae----nd~Vkl~la~~gl~e~~~~lv~~~k~~t~ 282 (604)
T KOG4500|consen 207 LLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAE----NDLVKLSLAQNGLLEDSIDLVRNMKDFTK 282 (604)
T ss_pred HHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhc----CcceeeehhhcchHHHHHHHHHhcccccc
Confidence 5432 12 234445666778899999887788999999999999987 78889999999999999998875 21
Q ss_pred -H---HHHHHHHHHHHHhcCChhhHHHHHHCC-ChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHH
Q 048757 544 -E---GVRQEAAGALWNLSFDDRNREAIAAAG-GVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVA 618 (864)
Q Consensus 544 -~---~v~~~a~~~L~~Ls~~~~~~~~i~~~~-~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~ 618 (864)
. .....++....-+...++.-..+...+ .++.+..++.+ .+...+..+.-+++|+++.+.++..+++.+.+.
T Consensus 283 k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S---~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~n 359 (604)
T KOG4500|consen 283 KTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRS---DDSNLITMGSLAIGNFARRDDICIQLVQKDFLN 359 (604)
T ss_pred hHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcC---CchhHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 1 233445666666666666666666655 78888888886 889999999999999999999999999999999
Q ss_pred HHHHHHc-----cCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcccee
Q 048757 619 PLIALAR-----SAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIA 693 (864)
Q Consensus 619 ~Lv~lL~-----~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~ 693 (864)
.|+++|. +++-+++..++.||+||.....|+..++..|.++.+...++... |.+...-..+++-+.++.+
T Consensus 360 kL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~-ppv~fkllgTlrM~~d~qe---- 434 (604)
T KOG4500|consen 360 KLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLAS-PPVTFKLLGTLRMIRDSQE---- 434 (604)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcC-CcchHHHHHHHHHHHhchH----
Confidence 9999985 34567788899999999999999999999999999999998876 5577777777777777665
Q ss_pred eecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHH-hccCh---hhHHHHhhccchhHHhcccc-ccCccc
Q 048757 694 SIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVR-SFSDP---QAFATALASAVPKSLAQITE-GARIPE 768 (864)
Q Consensus 694 ~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~-~~~~~---~~~~~a~~~~a~~~l~~~~~-~~~~~~ 768 (864)
.+...|+++.. .++.++. +.+.+ ...+--+...+++.-+.... ...+..
T Consensus 435 --------------------~~a~eL~kn~~------l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpk 488 (604)
T KOG4500|consen 435 --------------------YIACELAKNPE------LFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPK 488 (604)
T ss_pred --------------------HHHHHHhcCHH------HHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccc
Confidence 11122222221 2444443 11111 11222221122222221111 245557
Q ss_pred ccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHh-----hccCCCc-chhhhhhhhhhcChhhHHHH
Q 048757 769 AAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQ-----FTMPGGQ-HSMHHTNLLQNVGAPRVLQS 830 (864)
Q Consensus 769 ~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~-----~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 830 (864)
.| ||+.+|.++...+-.+|..|..||+. ++.|+.+ .+.-.+.++-+.|+......
T Consensus 489 sg-------~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~ 549 (604)
T KOG4500|consen 489 SG-------GIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAAT 549 (604)
T ss_pred cc-------cHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhH
Confidence 77 89999999999999999999999833 3334433 45556666777776555444
No 15
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.80 E-value=3.7e-18 Score=193.64 Aligned_cols=364 Identities=24% Similarity=0.297 Sum_probs=284.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC---CCHHHHHHHHHHHHHHhCC-
Q 048757 313 LLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS---PPEGLQSEVAKAIANLSVD- 388 (864)
Q Consensus 313 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~---~~~~~~~~a~~~L~~L~~~- 388 (864)
.|+.|+...|++ ..+..+..+....+ ....+...|.++.|+++|-- .+.+.+..|-.+|.|+..+
T Consensus 201 sllsml~t~D~e---e~ar~fLemSss~e--------sCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq 269 (2195)
T KOG2122|consen 201 SLLSMLGTDDEE---EMARTFLEMSSSPE--------SCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ 269 (2195)
T ss_pred HHhhhcccCCHH---HHHHHHHHhccCch--------hhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC
Confidence 355666555543 22333334443333 34668899999999999954 3567888999999999883
Q ss_pred chhHHHHHhcCcH---HHHHHHHc-------c-------CCHHHH-HHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHc
Q 048757 389 SKVAKAVSENGGI---DILADLAR-------S-------TNRLVA-EEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIF 450 (864)
Q Consensus 389 ~~~~~~i~~~g~i---~~Lv~lL~-------~-------~~~~v~-~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~ 450 (864)
++.+..=.+..++ +.+...+. . ...+-+ -.|+.+|.+++.++++|..|.+.|+++++.+|+.
T Consensus 270 PD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~ 349 (2195)
T KOG2122|consen 270 PDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQ 349 (2195)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHH
Confidence 4433322233333 32322221 1 012222 3678899999999999999999999999999875
Q ss_pred ccC---------CCCHHHHHHHHHHHHHhcCCCc-chHHHH-hcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCC
Q 048757 451 KWS---------SWNDGVLERAAGALANLAADDK-CSLEVA-RAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSN 519 (864)
Q Consensus 451 ~~~---------~~~~~v~~~a~~~L~~L~~~~~-~~~~i~-~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~ 519 (864)
-.+ .....+|..+..+|.||...+. ++..+. ..|++.++|..|.+. .+++....+..|+||++..|
T Consensus 350 vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD-- 426 (2195)
T KOG2122|consen 350 VDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRAD-- 426 (2195)
T ss_pred HHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhcccccc--
Confidence 311 1123688999999999999887 555554 568899999999984 57899999999999999865
Q ss_pred cccchhhhccChHHHHHHH-hcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHH-CCChHHHHHHHHh-cCCCCHHHHHHHH
Q 048757 520 SNNAAVGLETGALEALVQL-TFSKHEGVRQEAAGALWNLSFD-DRNREAIAA-AGGVEALVALVRS-CSSSSQGLQERAA 595 (864)
Q Consensus 520 ~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~-~~~i~~Lv~lL~~-~~~~~~~v~~~A~ 595 (864)
...++.+.+.|-+..|+.. ++...+......+.+||||+.+ .+++..|.. .|++..|+.+|.. +.+..-.+.+.|-
T Consensus 427 ~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaG 506 (2195)
T KOG2122|consen 427 SNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAG 506 (2195)
T ss_pred ccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCc
Confidence 3567888999999999987 7777778889999999999998 678888876 5789999999974 2234567889999
Q ss_pred HHHHHhcc----CchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCc
Q 048757 596 GALWGLSL----SEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLS 670 (864)
Q Consensus 596 ~aL~~L~~----~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~ 670 (864)
++|.|.+. .+++|+.+.+++.+..|+..|++..-.++.+++++||||.. +++.++.+++.|+|+.|..|+++.+
T Consensus 507 GILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKh- 585 (2195)
T KOG2122|consen 507 GILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKH- 585 (2195)
T ss_pred cHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhh-
Confidence 99999875 48899999999999999999999999999999999999976 8999999999999999999999987
Q ss_pred HHHHHHHHHHHHHhhcCCccc
Q 048757 671 KMARFMAALALAYIVDGRMED 691 (864)
Q Consensus 671 ~~~r~~aa~aL~~l~~~~~~~ 691 (864)
.++-.-++.||.|+...++..
T Consensus 586 kMIa~GSaaALrNLln~RPAk 606 (2195)
T KOG2122|consen 586 KMIAMGSAAALRNLLNFRPAK 606 (2195)
T ss_pred hhhhhhHHHHHHHHhcCCchh
Confidence 788888999999999988743
No 16
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.80 E-value=1.8e-20 Score=189.91 Aligned_cols=213 Identities=18% Similarity=0.313 Sum_probs=172.4
Q ss_pred CCCCeecCCCCC-CCHHHHHHHHhcCCCCcEEEecCCCCchH--H--HHhCCcccceeeeecCCCCCHHHHHHHHhCCCC
Q 048757 7 CLWSSLDLRPYK-FDTSAAESLSSRCTNLQALWFRGALSADA--M--IILQARRLREINVEFCRELTDAIFSAIVARHEM 81 (864)
Q Consensus 7 ~lw~~ldL~~~~-~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l--~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~ 81 (864)
..++.+.|++++ ..++.+.....+|||+++|++.+|..++. + ....|++|++|++..|..+||..++.+++.|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456788888875 34568999999999999999999997743 2 234999999999999999999999999999999
Q ss_pred cceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc----CCCC
Q 048757 82 LEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE----NLSS 157 (864)
Q Consensus 82 L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~~ 157 (864)
|++|++ +||+.|++.+++.+.++|++|+.+...||....++.+..+..+|+.+..+|+..|..+||.++. +|..
T Consensus 218 L~~lNl--Swc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 218 LKYLNL--SWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHHhhh--ccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 999999 9999999999999999999999998888988888888888888888888888888888887755 6777
Q ss_pred cCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC----CCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 158 VRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR----TNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 158 L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~----~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
|+.|+.++|..++|..+..+..+|++|+.+.+++ +|.++..+.+-+ +.|+.+++.+|-.+.+.+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~---~~Le~l~~e~~~~~~d~t 363 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC---PHLERLDLEECGLITDGT 363 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC---hhhhhhcccccceehhhh
Confidence 7777777777777777777777777777777777 445555444333 666666666666666664
No 17
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.78 E-value=4.2e-17 Score=185.22 Aligned_cols=362 Identities=22% Similarity=0.212 Sum_probs=271.9
Q ss_pred chhhhhhccCccHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcHHHHHHHHccC---CHHHHHHHHHHHHHhcccC
Q 048757 264 QNWRKLKVRDRISDEIVSWIERVLSHSLMRISKKNPKEFDDFWLRQGATLLLSLMESS---QQEVQERAAYAVATFVVID 340 (864)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~~---~~~v~~~a~~~L~~L~~~~ 340 (864)
.+|+-......+-.++++. ++. ...+.+....++..+-++.|+++|.-+ +.+.+..|-.+|.|+....
T Consensus 199 s~sllsml~t~D~ee~ar~--------fLe-mSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq 269 (2195)
T KOG2122|consen 199 SNSLLSMLGTDDEEEMART--------FLE-MSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ 269 (2195)
T ss_pred hhHHhhhcccCCHHHHHHH--------HHH-hccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC
Confidence 3455544555566666642 111 234444444444444499999999643 5789999999999998766
Q ss_pred CcccccchHhHHHHHHhCCHHHHHH-------HhcCC--------CHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHH
Q 048757 341 DQNAMVDCQRAEAILRHGGVRLLLD-------LARSP--------PEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILA 405 (864)
Q Consensus 341 ~~~~~~~~~~~~~i~~~~~i~~L~~-------lL~~~--------~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv 405 (864)
.+.. .. ++.+.-...++.+.. .+... +.--...|+.+|..++.++++|..+.+.|+++.+.
T Consensus 270 PD~k---r~-RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIa 345 (2195)
T KOG2122|consen 270 PDEK---RG-RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIA 345 (2195)
T ss_pred cchh---hh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHH
Confidence 5431 11 112211122221111 11111 11122368889999999999999999999999988
Q ss_pred HHHcc---------C---CHHHHHHHHHHHHHhcCCC-CcHHHHH-hhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhc
Q 048757 406 DLARS---------T---NRLVAEEVVGGLWNLSVGE-DHKGAIA-RAGGIKALVDLIFKWSSWNDGVLERAAGALANLA 471 (864)
Q Consensus 406 ~lL~~---------~---~~~v~~~a~~aL~~Ls~~~-~~~~~i~-~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~ 471 (864)
+|+.- . ...++.++..+|.||...+ .|+..++ ..|.+..+|..|. +..+++....+.+|+||+
T Consensus 346 eLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~---s~peeL~QV~AsvLRNLS 422 (2195)
T KOG2122|consen 346 ELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI---SAPEELLQVYASVLRNLS 422 (2195)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh---cChHHHHHHHHHHHHhcc
Confidence 87631 1 2359999999999999854 5677776 6688999999986 467799999999999999
Q ss_pred CCCc--chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhh-ccChHHHHHHHhcCC----CH
Q 048757 472 ADDK--CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGL-ETGALEALVQLTFSK----HE 544 (864)
Q Consensus 472 ~~~~--~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~-~~~~i~~L~~lL~~~----~~ 544 (864)
...+ .+..+.+.|.+..|+...-....+......+.|||||+.| ..+++..+. -.|++..|+.+|..+ .-
T Consensus 423 WRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAH---cteNKA~iCaVDGALaFLVg~LSY~~qs~tL 499 (2195)
T KOG2122|consen 423 WRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAH---CTENKAEICAVDGALAFLVGTLSYEGQSNTL 499 (2195)
T ss_pred ccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhc---ccccchhhhcccchHHHHHhhccccCCcchh
Confidence 8744 4556668888999888776545567788999999999998 445555554 468999999999764 45
Q ss_pred HHHHHHHHHHHHhcC----ChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CchhhHHhhhcCCHHH
Q 048757 545 GVRQEAAGALWNLSF----DDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL-SEANSIAIGREGGVAP 619 (864)
Q Consensus 545 ~v~~~a~~~L~~Ls~----~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~-~~~~~~~i~~~~~i~~ 619 (864)
.+.+.|-++|+|++. .+++|+.+.+++++..|++.|++ .+-.+..+++++||||+. +++..+.+++.|+++.
T Consensus 500 aIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS---~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~m 576 (2195)
T KOG2122|consen 500 AIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKS---HSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPM 576 (2195)
T ss_pred hhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhh---cceEEeecchhhhhhhhcCCHHHHHHHHhcccHHH
Confidence 688999999999866 46789999999999999999998 888899999999999985 5888999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCcc
Q 048757 620 LIALARSAVVDVHETAAGALWNLAFNPG 647 (864)
Q Consensus 620 Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 647 (864)
|.+++++.+..+-+.++.+|.||..+.+
T Consensus 577 LrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 577 LRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 9999999999999999999999987654
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=2.2e-15 Score=148.08 Aligned_cols=320 Identities=16% Similarity=0.183 Sum_probs=257.1
Q ss_pred hCCHHHHHHHh---cCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHc--cCCHHHHHHHHHHHHHhcC-CC
Q 048757 357 HGGVRLLLDLA---RSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLAR--STNRLVAEEVVGGLWNLSV-GE 430 (864)
Q Consensus 357 ~~~i~~L~~lL---~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~Ls~-~~ 430 (864)
.|..+.++.++ .+++..+...++.+|..+.... ..+.+..|+..++.+|. .++.++.......+..-+. ++
T Consensus 103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q---pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE 179 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ---PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHE 179 (461)
T ss_pred CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC---cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH
Confidence 45555554443 4577788888888888887732 23788899999999985 4466677777777776654 77
Q ss_pred CcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcch----------HHHHhcCcHHHHHHHHHccCchh
Q 048757 431 DHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCS----------LEVARAGGVHALVMLARSFMFEG 500 (864)
Q Consensus 431 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~----------~~i~~~~~i~~Lv~ll~~~~~~~ 500 (864)
.+|+.+++.+..+.+.+.|.. .+...+.+...++++.|..+++.| ..+...|+...|++.++.+-+|+
T Consensus 180 ~nrQ~~m~~~il~Li~~~l~~--~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 180 VNRQLFMELKILELILQVLNR--EGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred HHHHHHHHhhHHHHHHHHHcc--cCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 899999999999999988875 344456668889999998887643 45667888999999999988899
Q ss_pred HHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCC-HH---HHHHHHHHHHHhcCChhhHHHHHHCCChHHH
Q 048757 501 VQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKH-EG---VRQEAAGALWNLSFDDRNREAIAAAGGVEAL 576 (864)
Q Consensus 501 v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~---v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~L 576 (864)
+...+..+|..|+. +.+.++.+.+.|++..|++++.+.+ .+ ....++..|+.|+.++..+..|++.|+.+.+
T Consensus 258 ~L~~l~~tl~~lAV----r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~i 333 (461)
T KOG4199|consen 258 SLVSLSTTLKALAV----RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKI 333 (461)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHH
Confidence 99999999999998 6789999999999999999998743 33 4467888999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhc-cCchhhHHhhhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhcCCcccHHHHH
Q 048757 577 VALVRSCSSSSQGLQERAAGALWGLS-LSEANSIAIGREGGVAPLIALARSAV--VDVHETAAGALWNLAFNPGNALCIV 653 (864)
Q Consensus 577 v~lL~~~~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~~~i~~Lv~lL~~~~--~~v~~~a~~aL~~L~~~~~~~~~i~ 653 (864)
+.++.. +..+|.+.+.++.++.-++ ++|++...+.+.|+-...++.++..+ ..|+++|+++++|+.....+...+.
T Consensus 334 i~l~~~-h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~ 412 (461)
T KOG4199|consen 334 ITLALR-HSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTIL 412 (461)
T ss_pred HHHHHH-cCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchH
Confidence 999886 5679999999999999998 45899999999999999999998655 5689999999999988554444444
Q ss_pred hCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcC
Q 048757 654 EGGGVQALIHLCSSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 654 ~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
-..|++.|+..-...+ +..+..|-.||..+.-+
T Consensus 413 l~~GiE~Li~~A~~~h-~tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 413 LANGIEKLIRTAKANH-ETCEAAAKAALRDLGCD 445 (461)
T ss_pred HhccHHHHHHHHHhcC-ccHHHHHHHHHHhcCcc
Confidence 4577888888777665 66777777777765543
No 19
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.3e-18 Score=165.70 Aligned_cols=206 Identities=22% Similarity=0.344 Sum_probs=174.6
Q ss_pred CCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHH--hCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 9 WSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMII--LQARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 9 w~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~--~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
.+.+||+...++...+..+.+.|.+|+.|++.|....|.+.. ..-.+|+.|++++|..+|..++..+.++|..|.+|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 789999999899999999999999999999999987776322 277899999999999999999999999999999999
Q ss_pred eccCCCCCCCHHHHHHHHhcCcCcCeeeecccCC-CcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc---CCCCcCEEE
Q 048757 87 FGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVRE-VNGDAINALAKQCRQLVEVGFIDSGGVDEAALE---NLSSVRYLS 162 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~-l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~---~~~~L~~L~ 162 (864)
| +||...++..-..++.--++|+.|+++||.. +.+..+..+.+.||+|.+|||++|..+++..+. .++.|++|+
T Consensus 267 l--sWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 267 L--SWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred c--hHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9 9998777764444455568999999999864 667788999999999999999999999996665 889999999
Q ss_pred EeCCCCCCHHHHHHHHhcCCCCcEEecCC--CCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 163 IAGTRNLNWSSAAIAWSKLTSLVGLDTSR--TNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 163 l~~c~~~~~~~l~~l~~~~~~L~~L~l~~--~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
++.|+.+....+..+. .-|.|.+||+.| .|...+.+.+.+ ++|+. +|..+.-.+
T Consensus 345 lsRCY~i~p~~~~~l~-s~psl~yLdv~g~vsdt~mel~~e~~---~~lki----n~q~~~~ia 400 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELN-SKPSLVYLDVFGCVSDTTMELLKEML---SHLKI----NCQHFNFIA 400 (419)
T ss_pred hhhhcCCChHHeeeec-cCcceEEEEeccccCchHHHHHHHhC---ccccc----cceeeeeee
Confidence 9999999988877774 589999999999 666677766666 65554 565555444
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=7.1e-15 Score=144.51 Aligned_cols=322 Identities=17% Similarity=0.210 Sum_probs=262.5
Q ss_pred HHHHHHHH---ccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 048757 311 ATLLLSLM---ESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIANL 385 (864)
Q Consensus 311 v~~L~~lL---~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~L 385 (864)
.+.++..+ .+++..+...+..+|..+..+.+ .+.+..+...++.+|.. ++.++.......+..-
T Consensus 106 ~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qp-----------dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~A 174 (461)
T KOG4199|consen 106 HDALITLLELAESPNESVLKKSLEAINSLTHKQP-----------DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKA 174 (461)
T ss_pred cchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCc-----------chhccccHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 55555544 46788899999999999875553 37789999999999854 6778888888888886
Q ss_pred hC-CchhHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCC----------cHHHHHhhCcHHHHHHHHcccC
Q 048757 386 SV-DSKVAKAVSENGGIDILADLARS-TNRLVAEEVVGGLWNLSVGED----------HKGAIARAGGIKALVDLIFKWS 453 (864)
Q Consensus 386 ~~-~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~----------~~~~i~~~g~i~~L~~lL~~~~ 453 (864)
+. ++.+|+.+.+.+..+.+.+.|.. +...+.+....++.-|..+++ +...|++.|++..|++.+.-+
T Consensus 175 c~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~- 253 (461)
T KOG4199|consen 175 CIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG- 253 (461)
T ss_pred HHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc-
Confidence 66 67899999999999999987743 344577778889998877654 456677889999999999863
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHH---HHHHHHHHHHhhcCCCCcccchhhhccC
Q 048757 454 SWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQ---EQAARALANLVAHGDSNSNNAAVGLETG 530 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~---~~a~~aL~~L~~~~~~~~~~~~~~~~~~ 530 (864)
-++.+......+|..|+..++....+.+.||+..|++++.++...+.+ ..++..|+.|+- ++.++..+++.|
T Consensus 254 -~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG----~DsvKs~IV~~g 328 (461)
T KOG4199|consen 254 -IDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG----SDSVKSTIVEKG 328 (461)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC----CCchHHHHHHhc
Confidence 346778899999999999999999999999999999999986555555 456777777775 678899999999
Q ss_pred hHHHHHHHhc--CCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-ch
Q 048757 531 ALEALVQLTF--SKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EA 606 (864)
Q Consensus 531 ~i~~L~~lL~--~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~ 606 (864)
+.+.++.++. +.+|.+.++++.++.-|+-. +++...+++.|+-...++.++. ++....+|.+|++.+.|+... ..
T Consensus 329 g~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka-hP~~a~vQrnac~~IRNiv~rs~~ 407 (461)
T KOG4199|consen 329 GLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA-HPVAAQVQRNACNMIRNIVVRSAE 407 (461)
T ss_pred ChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999998854 46888999999999988876 7788888999999999999997 455678999999999999876 45
Q ss_pred hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHH
Q 048757 607 NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALC 651 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 651 (864)
++.. .-..|++.|+..-+..++.+...|-.+|+.|..+..+++.
T Consensus 408 ~~~~-~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~ 451 (461)
T KOG4199|consen 408 NRTI-LLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE 451 (461)
T ss_pred ccch-HHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence 5544 4456889999999999999999999999999988777654
No 21
>PRK09687 putative lyase; Provisional
Probab=99.68 E-value=8.9e-15 Score=150.83 Aligned_cols=258 Identities=17% Similarity=0.049 Sum_probs=207.0
Q ss_pred HhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHH
Q 048757 356 RHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGA 435 (864)
Q Consensus 356 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 435 (864)
..-.++.|..+|.+++..++..++.+|+. +.+...++.+..+++++++.++..++.+|+.+...+..
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~----------~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQL----------RGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHh----------cCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 34567889999999999999999999998 44456788889999999999999999999999764322
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
....++.|..++.+ +.++.|+..|+.+|+++....... ....+..+...+.+. ++.+|..++.+|..+..
T Consensus 88 --~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 --QDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDK-STNVRFAVAFALSVIND- 157 (280)
T ss_pred --hHHHHHHHHHHHhc--CCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCC-CHHHHHHHHHHHhccCC-
Confidence 12356777777543 678899999999999986433211 122455566777774 68999999999977653
Q ss_pred CCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHH
Q 048757 516 GDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAA 595 (864)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~ 595 (864)
..+++.|+.+|+++++.+|..|+.+|+.+.... ..+++.|+.++.+ .++.+|..|+
T Consensus 158 -------------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~--------~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 158 -------------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN--------PDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred -------------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC--------HHHHHHHHHHhcC---CChHHHHHHH
Confidence 258899999999999999999999999983321 1367889999987 8999999999
Q ss_pred HHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHH
Q 048757 596 GALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARF 675 (864)
Q Consensus 596 ~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~ 675 (864)
.+|+. +....++++|++.|++++ ++..|+.+|+++. ...++|.|.+++....++.++.
T Consensus 214 ~aLg~----------~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig----------~~~a~p~L~~l~~~~~d~~v~~ 271 (280)
T PRK09687 214 IGLAL----------RKDKRVLSVLIKELKKGT--VGDLIIEAAGELG----------DKTLLPVLDTLLYKFDDNEIIT 271 (280)
T ss_pred HHHHc----------cCChhHHHHHHHHHcCCc--hHHHHHHHHHhcC----------CHhHHHHHHHHHhhCCChhHHH
Confidence 99994 666789999999999865 7788999999998 4468999999997444588999
Q ss_pred HHHHHHH
Q 048757 676 MAALALA 682 (864)
Q Consensus 676 ~aa~aL~ 682 (864)
.|.++|.
T Consensus 272 ~a~~a~~ 278 (280)
T PRK09687 272 KAIDKLK 278 (280)
T ss_pred HHHHHHh
Confidence 9999885
No 22
>PRK09687 putative lyase; Provisional
Probab=99.66 E-value=1e-14 Score=150.31 Aligned_cols=255 Identities=16% Similarity=0.081 Sum_probs=203.4
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
-.++.|..+|.+++..+|..|+..|+.+. +..+++.+..+++++++.+|..++++|+.|...
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~------------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~ 84 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRG------------------GQDVFRLAIELCSSKNPIERDIGADILSQLGMA 84 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcC------------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 33788999999999999999999998853 245678888899999999999999999997653
Q ss_pred chhHHHHHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADL-ARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
+.. ....++.|..+ ++++++.|+..|+.+|++++...... ...+++.+...+. +.+..||..++.+|
T Consensus 85 ~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~---D~~~~VR~~a~~aL 152 (280)
T PRK09687 85 KRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAF---DKSTNVRFAVAFAL 152 (280)
T ss_pred ccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhh---CCCHHHHHHHHHHH
Confidence 321 22356777776 68889999999999999996533211 1113455556664 46889999999999
Q ss_pred HHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHH
Q 048757 468 ANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVR 547 (864)
Q Consensus 468 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 547 (864)
+.+ .....++.|+.++.+. ++.++..|+.+|..+... ...+++.|+.+|.+.+.+||
T Consensus 153 g~~----------~~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~~~~~------------~~~~~~~L~~~L~D~~~~VR 209 (280)
T PRK09687 153 SVI----------NDEAAIPLLINLLKDP-NGDVRNWAAFALNSNKYD------------NPDIREAFVAMLQDKNEEIR 209 (280)
T ss_pred hcc----------CCHHHHHHHHHHhcCC-CHHHHHHHHHHHhcCCCC------------CHHHHHHHHHHhcCCChHHH
Confidence 765 2345789999999984 689999999999998432 23578999999999999999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHc-c
Q 048757 548 QEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALAR-S 626 (864)
Q Consensus 548 ~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~-~ 626 (864)
..|+.+|..+- ...+++.|++.|.+ ++ ++..|+.+|+. ++...++|.|..+++ +
T Consensus 210 ~~A~~aLg~~~----------~~~av~~Li~~L~~---~~--~~~~a~~ALg~----------ig~~~a~p~L~~l~~~~ 264 (280)
T PRK09687 210 IEAIIGLALRK----------DKRVLSVLIKELKK---GT--VGDLIIEAAGE----------LGDKTLLPVLDTLLYKF 264 (280)
T ss_pred HHHHHHHHccC----------ChhHHHHHHHHHcC---Cc--hHHHHHHHHHh----------cCCHhHHHHHHHHHhhC
Confidence 99999999873 23589999999986 44 67899999994 777789999999996 8
Q ss_pred CCHHHHHHHHHHHHH
Q 048757 627 AVVDVHETAAGALWN 641 (864)
Q Consensus 627 ~~~~v~~~a~~aL~~ 641 (864)
+++.++..|.++|..
T Consensus 265 ~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 265 DDNEIITKAIDKLKR 279 (280)
T ss_pred CChhHHHHHHHHHhc
Confidence 899999999998854
No 23
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.65 E-value=5.5e-14 Score=161.37 Aligned_cols=546 Identities=17% Similarity=0.156 Sum_probs=316.0
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH-----------------HHHhCCcccceeeeecCCCCC
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA-----------------MIILQARRLREINVEFCRELT 68 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-----------------l~~~~~~~L~~L~l~~c~~l~ 68 (864)
+...+++||.+.......++.+.+.+ |++|.+.+...... +-...-.+|++|++++-..++
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s 136 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFS 136 (699)
T ss_pred hheeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhh
Confidence 44567788888877777777775554 88888776632211 111256789999999987776
Q ss_pred HHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCC
Q 048757 69 DAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVD 148 (864)
Q Consensus 69 d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~ 148 (864)
..-...++..+|+|++|.+ ++ ..+..+.+..+..++|+|..||||++. +++- ..+ .++++|+.|.+.+-.--+
T Consensus 137 ~~W~~kig~~LPsL~sL~i--~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl--~GI-S~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVI--SG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL--SGI-SRLKNLQVLSMRNLEFES 209 (699)
T ss_pred ccHHHHHhhhCcccceEEe--cC-ceecchhHHHHhhccCccceeecCCCC-ccCc--HHH-hccccHHHHhccCCCCCc
Confidence 6667788888999999999 43 345555588888999999999999987 6653 333 458999999887744333
Q ss_pred HHHhc---CCCCcCEEEEeCCCCCCHH-HHH---HHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 149 EAALE---NLSSVRYLSIAGTRNLNWS-SAA---IAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 149 ~~~~~---~~~~L~~L~l~~c~~~~~~-~l~---~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
-..+. ++++|+.||+|.-...++. .+. .....+|+|+.||+|+|+.....+..++...|+|+.+.+.+|....
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~~~~ 289 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCLALS 289 (699)
T ss_pred hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhhccc
Confidence 23232 9999999999987766655 222 1235689999999999999999999999999999999888866554
Q ss_pred ccchhhhhhcccCceE-eeeehhhhhhhcccccccccccccccchhhhhhccCccHHHHHHHHHHHHHHHHHHHHhhCCc
Q 048757 222 AEADTSMMYNQKGKVV-LSLISEIFKGVASLFSDTTEINNGAFQNWRKLKVRDRISDEIVSWIERVLSHSLMRISKKNPK 300 (864)
Q Consensus 222 ~~~~~~~~~~~~~~ll-~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 300 (864)
... ....+.+ .+......+.+.+....... . ...+.+..+.+.+ ... .
T Consensus 290 ~~~------~~~i~~ln~at~~s~i~~L~~~~~l~r~-----------------~---~v~~cl~~l~~~~----~~~-~ 338 (699)
T KOG3665|consen 290 AVS------STEIRVLNTATLDSSIQALTYYLNLKRP-----------------S---EVSRCLNELLDLL----KSL-D 338 (699)
T ss_pred ccc------ccCceeeeecchhHHHHHHHHHHHhcCh-----------------H---HHHHHHHHHHHHH----HHh-h
Confidence 443 2222333 33334444445444433210 0 1111111111111 111 1
Q ss_pred hhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC------CCH--
Q 048757 301 EFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS------PPE-- 372 (864)
Q Consensus 301 ~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~------~~~-- 372 (864)
....+-..+-+..+++.++......+.....+|..++....... .+ ..-.-.+..|+..... ...
T Consensus 339 ~~~~~~~~~~l~~i~~sm~~~~s~~~i~~~~CL~~i~~~~~~~l--~~-----~~~~~~l~~LLn~v~~~~~~~~~~~~~ 411 (699)
T KOG3665|consen 339 STREYDISECLKLIINSMNTFSSSNQIQGSACLIHIVKHTKQRL--SP-----LLVSLLLKVLLNLVEKLDTLDSNDELT 411 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHhhhhcc--Ch-----HHHHHHHHHHHHhhhcccccccchhHH
Confidence 11111222335566666654333566666777777765553111 00 1111122223222221 000
Q ss_pred ------------------------HHHHHHHHHHHHHhCCchhHHHH----HhcCcHHHHHHH-----Hcc-CCHHHHHH
Q 048757 373 ------------------------GLQSEVAKAIANLSVDSKVAKAV----SENGGIDILADL-----ARS-TNRLVAEE 418 (864)
Q Consensus 373 ------------------------~~~~~a~~~L~~L~~~~~~~~~i----~~~g~i~~Lv~l-----L~~-~~~~v~~~ 418 (864)
..+......+.........+..+ ...|-.+....+ +.. .....+..
T Consensus 412 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (699)
T KOG3665|consen 412 LCNSIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLLRIKLRKIYWCDDVLE 491 (699)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHHHHHhhccchhhHHHH
Confidence 00000000000000000000000 011111111111 111 11112222
Q ss_pred HHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcH--HHHHHHHHc
Q 048757 419 VVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGV--HALVMLARS 495 (864)
Q Consensus 419 a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i--~~Lv~ll~~ 495 (864)
+ .+||+... +++++..+.+.||+..+.+.++.+ ...+++..+.+.+.+++...+.+........+ ..+-.++..
T Consensus 492 ~-~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f--~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 568 (699)
T KOG3665|consen 492 F-TALWNITDENPETCKEFLDNGGMKLLFKCLESF--DNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNK 568 (699)
T ss_pred H-HHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 2 28889876 678999999999999999999974 67788999999999999876544333222222 234445555
Q ss_pred cCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHH
Q 048757 496 FMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEA 575 (864)
Q Consensus 496 ~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~ 575 (864)
.+..+.-..++..|+.+..+++. . .+.+ ..+.+.+.-.+++...... .........+.+
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~-~------~~~~-----------~r~~~~~~l~e~i~~~~~~---~~~~~~~~~f~~ 627 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEK-T------TECV-----------FRNSVNELLVEAISRWLTS---EIRVINDRSFFP 627 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCc-C------cccc-----------chHHHHHHHHHHhhccCcc---ceeehhhhhcch
Confidence 55457788899999999886431 0 0111 1112222222233222221 111122233444
Q ss_pred -HHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHH
Q 048757 576 -LVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALA 624 (864)
Q Consensus 576 -Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL 624 (864)
+.+++.. +..+..+.+|++++.++... ++++..+.+.++++.+.+.-
T Consensus 628 ~~~~il~~--s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 628 RILRILRL--SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred hHHHHhcc--cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 6666665 57788999999999999865 77888888899988877664
No 24
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.5e-13 Score=140.97 Aligned_cols=360 Identities=17% Similarity=0.109 Sum_probs=280.6
Q ss_pred HHHHHHHHcc---CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 048757 311 ATLLLSLMES---SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 311 v~~L~~lL~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
++.+.+-++. ..+.+.+.|...|.||+.+-. ....+...+.+..|+..|..++.++.......|..|+-
T Consensus 262 ~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~--------~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI 333 (791)
T KOG1222|consen 262 IDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDIS--------VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI 333 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh
Confidence 4444444432 346677788889999985442 33568889999999999999999999999999999999
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
..+++..+.+.|.++.|+++....+++++...+..|.|++.+..++..++..|.+|.++.++.+ +.-..-|..++
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~-----d~~~~iA~~~l 408 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS-----DTKHGIALNML 408 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC-----cccchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999953 34445688899
Q ss_pred HHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHH----------
Q 048757 468 ANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQ---------- 537 (864)
Q Consensus 468 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~---------- 537 (864)
..++.++..+..+....+|+.+.+.+-.+...++....+....|||. +..+.+.+.+..++..|+.
T Consensus 409 Yh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~l----nkRNaQlvceGqgL~~LM~ra~k~~D~lL 484 (791)
T KOG1222|consen 409 YHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCL----NKRNAQLVCEGQGLDLLMERAIKSRDLLL 484 (791)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHh----ccccceEEecCcchHHHHHHHhcccchHH
Confidence 99999999999999999999999988877767766666666667776 5555555555544444433
Q ss_pred ---------------------------HhcC-CCHHHHHHHHHHHHHhcCChhh-HHHHHHCCChHHHHHHHHhcCCCCH
Q 048757 538 ---------------------------LTFS-KHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVALVRSCSSSSQ 588 (864)
Q Consensus 538 ---------------------------lL~~-~~~~v~~~a~~~L~~Ls~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~~~ 588 (864)
.+.. .++....++.++++||...+-. ...+.+...+|-+-..|..+. ...
T Consensus 485 mK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga-~ed 563 (791)
T KOG1222|consen 485 MKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA-DED 563 (791)
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc-cch
Confidence 2222 2233556677778888776544 444455778888888887532 345
Q ss_pred HHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCcccHHHHHhCCc-HHHHHHHh
Q 048757 589 GLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS--AVVDVHETAAGALWNLAFNPGNALCIVEGGG-VQALIHLC 665 (864)
Q Consensus 589 ~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~-v~~L~~ll 665 (864)
++....+-+++.++++......+...+.++.|+++|+. .+.+...+.......+..+...+..++++-. -..|++++
T Consensus 564 dLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLM 643 (791)
T KOG1222|consen 564 DLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLM 643 (791)
T ss_pred hhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 57788888999999999888899999999999999975 4566777788888888888777777766555 45689999
Q ss_pred cCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 666 SSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 666 ~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
++.+ ..+|.-.--+|--++..+.
T Consensus 644 HDkN-~eiRkVCDn~LdIiae~d~ 666 (791)
T KOG1222|consen 644 HDKN-AEIRKVCDNALDIIAEHDK 666 (791)
T ss_pred hccc-HHHHHHHHHHHHHHHHhhH
Confidence 9987 7788777677766665544
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.63 E-value=1.1e-13 Score=167.33 Aligned_cols=273 Identities=23% Similarity=0.157 Sum_probs=220.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
++.|+..|+++|+.+|..|+..|+.+. ..+.++.|+..|+++++.++..|+.+|..+....
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~------------------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~- 683 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT------------------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL- 683 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc------------------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-
Confidence 788999999999999999999998853 3557899999999999999999999999864321
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHh
Q 048757 391 VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANL 470 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L 470 (864)
...+.|...|+++++.++..|+.+|..+... ....++..|. +.+..++..|+.+|..+
T Consensus 684 --------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~---D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 684 --------PPAPALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALG---DPDHRVRIEAVRALVSV 741 (897)
T ss_pred --------CchHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhc---CCCHHHHHHHHHHHhcc
Confidence 2245788889999999999999999987532 2345677775 58889999999998765
Q ss_pred cCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHH
Q 048757 471 AADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEA 550 (864)
Q Consensus 471 ~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 550 (864)
+..+.|..++.+ +++++|..++.+|..+... +...++.|..+++++++.+|..|
T Consensus 742 -------------~~~~~l~~~l~D-~~~~VR~~aa~aL~~~~~~------------~~~~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 742 -------------DDVESVAGAATD-ENREVRIAVAKGLATLGAG------------GAPAGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred -------------cCcHHHHHHhcC-CCHHHHHHHHHHHHHhccc------------cchhHHHHHHHhcCCCHHHHHHH
Confidence 223557778877 4699999999999999752 12347889999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHH
Q 048757 551 AGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVD 630 (864)
Q Consensus 551 ~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 630 (864)
+.+|..+...+ ..++.++..|.+ +++.+|..|+.+|+. +.....++.|+.+|+++++.
T Consensus 796 ~~aLg~~g~~~---------~~~~~l~~aL~d---~d~~VR~~Aa~aL~~----------l~~~~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 796 LAALAELGCPP---------DDVAAATAALRA---SAWQVRQGAARALAG----------AAADVAVPALVEALTDPHLD 853 (897)
T ss_pred HHHHHhcCCcc---------hhHHHHHHHhcC---CChHHHHHHHHHHHh----------ccccchHHHHHHHhcCCCHH
Confidence 99999984321 134668888887 889999999999985 44556789999999999999
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048757 631 VHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALA 682 (864)
Q Consensus 631 v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~ 682 (864)
||..|+.+|..+..++ ...+.|...+.+++ +.||..|+.+|.
T Consensus 854 VR~~A~~aL~~~~~~~---------~a~~~L~~al~D~d-~~Vr~~A~~aL~ 895 (897)
T PRK13800 854 VRKAAVLALTRWPGDP---------AARDALTTALTDSD-ADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHhccCCCH---------HHHHHHHHHHhCCC-HHHHHHHHHHHh
Confidence 9999999999973222 35678888998875 889999999986
No 26
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.63 E-value=1.6e-13 Score=139.23 Aligned_cols=365 Identities=16% Similarity=0.110 Sum_probs=276.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC----CC---HHHHHHHHHHHH
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS----PP---EGLQSEVAKAIA 383 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~----~~---~~~~~~a~~~L~ 383 (864)
++.|.+...|+|.++-.++..+|+|+|++++++ +..+...||-..++..|+. .+ .+.-..+.+.|.
T Consensus 89 le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~-------R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~ 161 (604)
T KOG4500|consen 89 LELLRQTPSSPDTEVHEQCFRALGNICYDNNEN-------RAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH 161 (604)
T ss_pred HHHHHhCCCCCcccHHHHHHHHHhhhhccCchh-------HHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence 788888889999999999999999999999876 6788899997777777763 22 356666778888
Q ss_pred HHhC-CchhHHHHHhcCcHHHHHHHHc--cCCHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcccCCCCHH
Q 048757 384 NLSV-DSKVAKAVSENGGIDILADLAR--STNRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFKWSSWNDG 458 (864)
Q Consensus 384 ~L~~-~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 458 (864)
|... +.+.+.+..+.|.++.|...+. ..+....+.......|+.+ .+.......+......+++++.+ .-.++
T Consensus 162 Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~--~v~~d 239 (604)
T KOG4500|consen 162 NYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPS--MVRED 239 (604)
T ss_pred HhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHH--hhccc
Confidence 8776 5689999999999999998874 4567777777777777754 23334455566777888888875 45667
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchh-------HHHHHHHHHHHHhhcCCCCcccchhhhccCh
Q 048757 459 VLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEG-------VQEQAARALANLVAHGDSNSNNAAVGLETGA 531 (864)
Q Consensus 459 v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~-------v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~ 531 (864)
..+....+|...+.++..+-.+.+.|-+..++.+++..+.-. ....++.-..-|... .+..+........
T Consensus 240 ~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltG---DeSMq~L~~~p~~ 316 (604)
T KOG4500|consen 240 IDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTG---DESMQKLHADPQF 316 (604)
T ss_pred hhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcC---chHHHHHhcCcHH
Confidence 888999999999999999999999999999999998732111 112233333333332 1222333334448
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhc--CCCCHHHHHHHHHHHHHhccCchhhH
Q 048757 532 LEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSC--SSSSQGLQERAAGALWGLSLSEANSI 609 (864)
Q Consensus 532 i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~v~~~A~~aL~~L~~~~~~~~ 609 (864)
++.+...+.+.|.+....++-+|+|+++.++.+-.+++.+.+..|++.+... ..++.+++.+++.+|.|+.....++.
T Consensus 317 l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka 396 (604)
T KOG4500|consen 317 LDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKA 396 (604)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchh
Confidence 8899999999999999999999999999999999999999999999999762 23678899999999999999999999
Q ss_pred HhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc-cHHHHH-hCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcC
Q 048757 610 AIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG-NALCIV-EGGGVQALIHLCSSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 610 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~~~~i~-~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
.+...|..+.++..++...|.|+..-.+.|+-+....+ ...++. ...-++.|++..++++-..+.-..-..|.-+..+
T Consensus 397 ~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 397 HFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred hccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence 99999999999999999999999988888887765433 222222 2234677888888876433444444444444444
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=7.3e-16 Score=149.64 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=165.0
Q ss_pred CccCCCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH-H---HHhCCcccceeeeecCCCCCHHHHHHHHh
Q 048757 2 LGSSPCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA-M---IILQARRLREINVEFCRELTDAIFSAIVA 77 (864)
Q Consensus 2 l~~~p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-l---~~~~~~~L~~L~l~~c~~l~d~~l~~l~~ 77 (864)
+++|.++|+.+|+....+.+..+..+.++ +...+.+......+. + ....-..|++|||++.. +|-..+..+..
T Consensus 131 ~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~-it~stl~~iLs 207 (419)
T KOG2120|consen 131 LASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSV-ITVSTLHGILS 207 (419)
T ss_pred ccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhh-eeHHHHHHHHH
Confidence 57889999999999998988888888663 444555443221121 1 11234568999999865 89999999989
Q ss_pred CCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc----
Q 048757 78 RHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE---- 153 (864)
Q Consensus 78 ~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~---- 153 (864)
.|.+|+.|+| .+ ..++|.-...++++ .+|+.|+|++|..+|..++..+.++|..|.+|+|++|...++. +.
T Consensus 208 ~C~kLk~lSl--Eg-~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~ 282 (419)
T KOG2120|consen 208 QCSKLKNLSL--EG-LRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVA 282 (419)
T ss_pred HHHhhhhccc--cc-cccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHh
Confidence 9999999999 54 46888888888864 7899999999999999999999999999999999999877765 33
Q ss_pred -CCCCcCEEEEeCCCC-CCHHHHHHHHhcCCCCcEEecCC-CCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 154 -NLSSVRYLSIAGTRN-LNWSSAAIAWSKLTSLVGLDTSR-TNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 154 -~~~~L~~L~l~~c~~-~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
--++|..|+++||.. +.+..+..+...||+|..||++. ...++ .+...+...+.|++|.++.|-.+...+
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~ 355 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPET 355 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHH
Confidence 447899999999864 56667778888999999999998 33333 334444456889999999998888876
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.61 E-value=1.5e-12 Score=146.76 Aligned_cols=343 Identities=16% Similarity=0.139 Sum_probs=264.4
Q ss_pred hhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 048757 308 RQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 308 ~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
.+..+.|...|.++++.||..++..|++++...+. ....+.+.+.++.++..+.+++..+...|+.+|.+++.
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-------~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-------AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS 148 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH-------HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC
Confidence 34478899999999999999999999998755532 24567788999999999999999999999999999999
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHH
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGA 466 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~ 466 (864)
.+.....+.+.+.++.|..++...++.++.++..++.+++. +++....+.+.|.++.++..++ +++.-++.+++.+
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~---~dDiLvqlnalel 225 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELD---SDDILVQLNALEL 225 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhc---CccHHHHHHHHHH
Confidence 88888889899999999999988889999999999999976 6677888889999999999997 3777889999999
Q ss_pred HHHhcCCCcchHHHHhcCcHHHHHHHHHccCchh-----HHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC
Q 048757 467 LANLAADDKCSLEVARAGGVHALVMLARSFMFEG-----VQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS 541 (864)
Q Consensus 467 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~-----v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~ 541 (864)
|..|+..+.+...+.+.|.++.|..++.+..... .--..+....+++... +.. ..-.-...+..+.+++.+
T Consensus 226 l~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~--~~~--v~~~~p~~~~~l~~~~~s 301 (503)
T PF10508_consen 226 LSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS--PQE--VLELYPAFLERLFSMLES 301 (503)
T ss_pred HHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC--hHH--HHHHHHHHHHHHHHHhCC
Confidence 9999998888899999999999999997753222 1123446677777631 111 111113455566777888
Q ss_pred CCHHHHHHHHHHHHHhcCChhhHHHH-HHC-CChHHHHHHHHh-cCCCCHHHHHHHHHHHHHhccC--c-------h-hh
Q 048757 542 KHEGVRQEAAGALWNLSFDDRNREAI-AAA-GGVEALVALVRS-CSSSSQGLQERAAGALWGLSLS--E-------A-NS 608 (864)
Q Consensus 542 ~~~~v~~~a~~~L~~Ls~~~~~~~~i-~~~-~~i~~Lv~lL~~-~~~~~~~v~~~A~~aL~~L~~~--~-------~-~~ 608 (864)
.|+..+..|..+++.++...+++..+ ... +.++..++.... ..++..+++.++..++.++-.. + . ..
T Consensus 302 ~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~ 381 (503)
T PF10508_consen 302 QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITE 381 (503)
T ss_pred CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 99999999999999999999998888 443 344444444332 2247789999999999999432 2 1 11
Q ss_pred HHhhh--cCCHH-HHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhC-CcHHHHHHH
Q 048757 609 IAIGR--EGGVA-PLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEG-GGVQALIHL 664 (864)
Q Consensus 609 ~~i~~--~~~i~-~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~-g~v~~L~~l 664 (864)
.++.. .+... .++.+++.+=+++|..+...|..++.++-....+... |.++.|++-
T Consensus 382 ~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr 441 (503)
T PF10508_consen 382 SWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDR 441 (503)
T ss_pred HHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCC
Confidence 22222 33444 6788888888999999999999999988666656554 445555443
No 29
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.61 E-value=9.3e-13 Score=141.42 Aligned_cols=515 Identities=12% Similarity=0.045 Sum_probs=322.6
Q ss_pred HHHHHHHHHHhhCCchhHHHHHhhcHHHHHHHHccCC--HHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHH
Q 048757 286 VLSHSLMRISKKNPKEFDDFWLRQGATLLLSLMESSQ--QEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLL 363 (864)
Q Consensus 286 ~~~~~l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L 363 (864)
.........++++.++. .+++.+.++.|..++...+ ++.+...+.+++++..++++. ...+.+.+.++.|
T Consensus 29 ai~~~kN~vig~~~~K~-~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~-------v~svL~~~~ll~L 100 (678)
T KOG1293|consen 29 AIYMSKNLVIGFTDNKE-TNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDK-------VDSVLRIIELLKL 100 (678)
T ss_pred HHHHhcchhhcCCCccc-hhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccch-------HHHHHHHhhHHHH
Confidence 33344445566776664 5566677999999997654 677777888899988777654 5789999999999
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHHhCCchhHHHHH---hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhh
Q 048757 364 LDLARSPP-EGLQSEVAKAIANLSVDSKVAKAVS---ENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARA 439 (864)
Q Consensus 364 ~~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~---~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~ 439 (864)
+++|.++| ..+...+++++.++........... ....++.+..++..+...+.+.-+....+++..++++..+.+.
T Consensus 101 l~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na 180 (678)
T KOG1293|consen 101 LQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNA 180 (678)
T ss_pred HHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccc
Confidence 99999988 8899999999999988543222222 2222333333333356666677777778888888999999999
Q ss_pred CcHHHHHHHHcccCCCCHHHHHHHHHHHH---HhcCCCc-chH----HHHhcCcHH--HHHHHHHccCchhHHHHHHHHH
Q 048757 440 GGIKALVDLIFKWSSWNDGVLERAAGALA---NLAADDK-CSL----EVARAGGVH--ALVMLARSFMFEGVQEQAARAL 509 (864)
Q Consensus 440 g~i~~L~~lL~~~~~~~~~v~~~a~~~L~---~L~~~~~-~~~----~i~~~~~i~--~Lv~ll~~~~~~~v~~~a~~aL 509 (864)
|..+.+.-++. ..+..+|..|..+++ ++..+++ ... ...+.|..+ ...++++++ +...+..++.++
T Consensus 181 ~i~ekI~~l~~---~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~-~~s~~l~sl~cl 256 (678)
T KOG1293|consen 181 GILEKINILLM---YLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDP-DFSERLRSLECL 256 (678)
T ss_pred cchhhHHHHHH---hhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCC-CccHHHHHHHHH
Confidence 88888776664 246688888888888 7766655 222 222444443 344555553 344456666666
Q ss_pred HHHhhcCCCCc---------cc---------------------------------------chhhhccChHHHHHHHh--
Q 048757 510 ANLVAHGDSNS---------NN---------------------------------------AAVGLETGALEALVQLT-- 539 (864)
Q Consensus 510 ~~L~~~~~~~~---------~~---------------------------------------~~~~~~~~~i~~L~~lL-- 539 (864)
.++...+.+.. ++ .....+....+..++++
T Consensus 257 ~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~ 336 (678)
T KOG1293|consen 257 VPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFI 336 (678)
T ss_pred HHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHH
Confidence 66654321000 00 00000011111111111
Q ss_pred --------------------------------------------------cCCCHHHHHHHHHHHHHhcCChh-hHHHHH
Q 048757 540 --------------------------------------------------FSKHEGVRQEAAGALWNLSFDDR-NREAIA 568 (864)
Q Consensus 540 --------------------------------------------------~~~~~~v~~~a~~~L~~Ls~~~~-~~~~i~ 568 (864)
...+...+.+|+..+.+++..-. -+....
T Consensus 337 ~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~ 416 (678)
T KOG1293|consen 337 CASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLK 416 (678)
T ss_pred HHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 11234445555555555544421 222233
Q ss_pred HCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc
Q 048757 569 AAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG 647 (864)
Q Consensus 569 ~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 647 (864)
+..++++|++++.+ ++..++..+.++|+|+... ...+..|...|+++.+.+++.+.++.++..+.|+|+++..+.+
T Consensus 417 ~~dv~~plvqll~d---p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMD---PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred cchhHHHHHHHhhC---cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence 45689999999987 8899999999999999988 8889999999999999999999999999999999999998554
Q ss_pred c--HHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceeeecccccCCCcccchHHHHHHHHHHHHhhc-c
Q 048757 648 N--ALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIASIGSSLEGTSESENLDVIRRMALKHIEDFC-A 724 (864)
Q Consensus 648 ~--~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~-~ 724 (864)
. +......=.-..+..+.++++ +.|+..+...|+|+..+..+.+..+.....+.-..+ .-.+ +.. .
T Consensus 494 e~~k~~~~~ki~a~~i~~l~nd~d-~~Vqeq~fqllRNl~c~~~~svdfll~~~~~~ld~i---------~l~l-k~a~~ 562 (678)
T KOG1293|consen 494 EEEKFQLLAKIPANLILDLINDPD-WAVQEQCFQLLRNLTCNSRKSVDFLLEKFKDVLDKI---------DLQL-KIAIG 562 (678)
T ss_pred HHHHHHHHHHhhHHHHHHHHhCCC-HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhHHHHHH---------HHHH-hhccC
Confidence 3 334444445566888888886 889999999999998887643221111000000000 0000 111 1
Q ss_pred cccchhhhhHHHH--hccChhhHHHHhhccchhHHhccccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHH
Q 048757 725 GRIALKHIEDFVR--SFSDPQAFATALASAVPKSLAQITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALL 802 (864)
Q Consensus 725 g~~~~~~i~~l~~--~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~ 802 (864)
..+..+.....++ ...+.+.+.+-. ..+.... .+ .-...-+...+....++.++.|-+.
T Consensus 563 ~pi~ie~~~~~~~l~~~~d~~~~~am~---~~fk~lv---------l~-------~e~~~n~~q~s~~~qls~~~~~~ii 623 (678)
T KOG1293|consen 563 SPILIEFLAKKMRLLNPLDTQQKKAME---GIFKILV---------LL-------AEVNENKKQLSIEQQLSLNIMSEII 623 (678)
T ss_pred CceehhhHHHHHHhccchhHHHHHHHH---HHHHHHH---------HH-------HHHHHHHHhhccHHHHHHHHHHHHH
Confidence 1122222222221 122222111111 0000000 00 0012223455778889999999999
Q ss_pred hhccCCCcchhhhhhhhhhcChhhHHHHhhhhhccchhHHHHHHH
Q 048757 803 QFTMPGGQHSMHHTNLLQNVGAPRVLQSTAAAAIAPVEAKIFAKI 847 (864)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 847 (864)
+++++++...-.+..+..+++.+..... ..++..+++|+.-+.
T Consensus 624 nl~~~~s~s~~dr~~~~~n~i~e~~~k~--~~sd~~la~ki~~~~ 666 (678)
T KOG1293|consen 624 NLTTTDSSSNFDRSNLKLNCIWELNNKL--WNSDVSLATKIAIEN 666 (678)
T ss_pred hccCCCCCcccchhhccccceechhhhc--ccchhHHHHHHHHHh
Confidence 9999999988889888887765544443 345567888888776
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.55 E-value=5.4e-13 Score=161.21 Aligned_cols=273 Identities=22% Similarity=0.139 Sum_probs=195.0
Q ss_pred HhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHH
Q 048757 356 RHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGA 435 (864)
Q Consensus 356 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 435 (864)
+...++.|+..|.++++.+|..|+..|+.+ .....++.|+..|+++++.|+..|+.+|..+.....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~----------~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTET----------TPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhh----------cchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence 345567888888889999999999988883 345678888888888889999999888888743211
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
..+.|...|. ++++.++..|+.+|..+.. +....|+..+++ +++.+|..|+.+|..+..
T Consensus 685 -----~~~~L~~~L~---~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D-~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 685 -----PAPALRDHLG---SPDPVVRAAALDVLRALRA-----------GDAALFAAALGD-PDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred -----chHHHHHHhc---CCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcC-CCHHHHHHHHHHHhcccC-
Confidence 2356667775 3677888888888877631 224456777777 458888888888876532
Q ss_pred CCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHH
Q 048757 516 GDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAA 595 (864)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~ 595 (864)
.+.|..++.++++.||..++.+|..+.... ...++.|..++++ +++.+|..|+
T Consensus 744 ----------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D---~d~~VR~aA~ 796 (897)
T PRK13800 744 ----------------VESVAGAATDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGD---PDPLVRAAAL 796 (897)
T ss_pred ----------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcC---CCHHHHHHHH
Confidence 145677888888999999999988874321 1236778888886 7889999999
Q ss_pred HHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHH
Q 048757 596 GALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARF 675 (864)
Q Consensus 596 ~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~ 675 (864)
.+|+.+... ...++.++..|+++++.||..|+.+|..+. ....++.|+.++.+++ +.||.
T Consensus 797 ~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~----------~~~a~~~L~~~L~D~~-~~VR~ 856 (897)
T PRK13800 797 AALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAA----------ADVAVPALVEALTDPH-LDVRK 856 (897)
T ss_pred HHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhcc----------ccchHHHHHHHhcCCC-HHHHH
Confidence 999864322 123466888888888889999999998875 3356788999998886 88999
Q ss_pred HHHHHHHHhhcCCccceeeecccccCCCcccchHHH
Q 048757 676 MAALALAYIVDGRMEDIASIGSSLEGTSESENLDVI 711 (864)
Q Consensus 676 ~aa~aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~ 711 (864)
.|+++|+.+ .+.++....+...++|.+..|+..++
T Consensus 857 ~A~~aL~~~-~~~~~a~~~L~~al~D~d~~Vr~~A~ 891 (897)
T PRK13800 857 AAVLALTRW-PGDPAARDALTTALTDSDADVRAYAR 891 (897)
T ss_pred HHHHHHhcc-CCCHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999875 23333323344445555555554443
No 31
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.53 E-value=2.4e-11 Score=136.98 Aligned_cols=354 Identities=15% Similarity=0.099 Sum_probs=265.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchh
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKV 391 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~ 391 (864)
+.++..|++.+.+....++.+|..+..... ......+..+.|...|.++++.++..+++.|+++..+++.
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~----------~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~ 110 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSALS----------PDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG 110 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhccC----------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 347777887777777788888888764332 1122577889999999999999999999999999886644
Q ss_pred -HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHh
Q 048757 392 -AKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANL 470 (864)
Q Consensus 392 -~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L 470 (864)
...+.+.+.++.++.++.+++..+...|..+|.+++..+.....+.+.+.+..|.+++.+ .++.+|.++..++.++
T Consensus 111 ~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~---~~~~vR~Rv~el~v~i 187 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ---SSDIVRCRVYELLVEI 187 (503)
T ss_pred HHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc---cCHHHHHHHHHHHHHH
Confidence 566677888999999999999999999999999999988888888888889999999963 4778899999999999
Q ss_pred cCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC--CH---
Q 048757 471 AADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK--HE--- 544 (864)
Q Consensus 471 ~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~--- 544 (864)
+..++ ....+.+.|.++.++..+++ ++.-++.+++..|..|+. .+.....+.+.|+++.|..++.+. ++
T Consensus 188 ~~~S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~ 262 (503)
T PF10508_consen 188 ASHSPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLS 262 (503)
T ss_pred HhcCHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccCCccc
Confidence 87765 66777788999999999998 678899999999999998 566788889999999999998764 22
Q ss_pred H-HHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHh-hh-cCCH----
Q 048757 545 G-VRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAI-GR-EGGV---- 617 (864)
Q Consensus 545 ~-v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i-~~-~~~i---- 617 (864)
. .....+....+++...+..-.-.-...+..+.+++.+ .++..+..|..+++.++...+.+..+ .+ .+.+
T Consensus 263 ~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s---~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l 339 (503)
T PF10508_consen 263 SLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLES---QDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVL 339 (503)
T ss_pred chhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHH
Confidence 1 2233446667777642211100011234444555554 89999999999999999998888887 33 3343
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCccc--H-------HH---HHhCCcHH-HHHHHhcCCCcHHHHHHHHHHHHHh
Q 048757 618 APLIALARSAVVDVHETAAGALWNLAFNPGN--A-------LC---IVEGGGVQ-ALIHLCSSSLSKMARFMAALALAYI 684 (864)
Q Consensus 618 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~--~-------~~---i~~~g~v~-~L~~ll~~~~~~~~r~~aa~aL~~l 684 (864)
..+-...+++..+++..+..+|.++...+.. - .. ....+-.. .+..+++.+= |++|..+...|..+
T Consensus 340 ~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF-~elr~a~~~~l~~l 418 (503)
T PF10508_consen 340 KAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPF-PELRCAAYRLLQAL 418 (503)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 4444445677889999999999999542221 1 11 11223344 6677777664 77888888877766
Q ss_pred hcC
Q 048757 685 VDG 687 (864)
Q Consensus 685 ~~~ 687 (864)
+..
T Consensus 419 ~~~ 421 (503)
T PF10508_consen 419 AAQ 421 (503)
T ss_pred hcC
Confidence 654
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.50 E-value=1.3e-12 Score=131.52 Aligned_cols=197 Identities=21% Similarity=0.172 Sum_probs=169.9
Q ss_pred HHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCC
Q 048757 395 VSENGGIDILADLAR-STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAAD 473 (864)
Q Consensus 395 i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~ 473 (864)
+.+.+.++.|+.+|+ +.+|.+++.+..++++.+..+.++..+.+.|+++.+..++. ++++.+++.|..+|.|++.+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~---~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLN---DPNPSVREKALNALNNLSVN 84 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcC---CCChHHHHHHHHHHHhcCCC
Confidence 345677899999997 46899999999999999999999999999999999999996 47889999999999999999
Q ss_pred CcchHHHHhcCcHHHHHHHHHcc-CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHH
Q 048757 474 DKCSLEVARAGGVHALVMLARSF-MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAG 552 (864)
Q Consensus 474 ~~~~~~i~~~~~i~~Lv~ll~~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 552 (864)
.+++..+-. .++.+.+...+. -+.++|..++++|.+|+. ..+.+..+. +.++.++++|.+++..++..+.+
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv----~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTV----TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCC----CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 988877643 477777765553 357889999999999987 344555554 47999999999999999999999
Q ss_pred HHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 048757 553 ALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS 604 (864)
Q Consensus 553 ~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~ 604 (864)
+|.|||.++.....+...++...++.++.+ +.+.++...++..+.|+...
T Consensus 157 ~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~--~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLSAQVLSSFLSLFNS--SESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHhccCHHHHHHHHhccchhHHHHHHcc--CCccHHHHHHHHHHHHHHHh
Confidence 999999999998888898999999999987 56788899999999999643
No 33
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5.5e-11 Score=122.51 Aligned_cols=350 Identities=17% Similarity=0.139 Sum_probs=258.0
Q ss_pred HHHHHHHhhCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc
Q 048757 289 HSLMRISKKNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR 368 (864)
Q Consensus 289 ~~l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~ 368 (864)
..++...++-.-+ -++..+.-|..|++.|...+.++.......|..|+..+++ +..+...|.++.|+++..
T Consensus 285 ylLlNlAed~~~E-lKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eN--------K~~M~~~~iveKL~klfp 355 (791)
T KOG1222|consen 285 YLLLNLAEDISVE-LKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDEN--------KIVMEQNGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHhhhhhHH-HHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccc--------hHHHHhccHHHHHHHhcC
Confidence 3355554444444 3556666699999999988889999999999998876653 577889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHH
Q 048757 369 SPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDL 448 (864)
Q Consensus 369 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~l 448 (864)
...++++...+..|.|++.+...|..++..|-+|.|+.++.++... .-|+..|..++.++..+..+....+|+.+++.
T Consensus 356 ~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~--~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 356 IQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKH--GIALNMLYHLSCDDDAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred CCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccc--hhhhhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999765432 45778899999999999999999999999987
Q ss_pred HcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCc-------------------------------------HHHHHH
Q 048757 449 IFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGG-------------------------------------VHALVM 491 (864)
Q Consensus 449 L~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~-------------------------------------i~~Lv~ 491 (864)
+.. ..+.++-........|++.+..+.+.+.+..+ +..|..
T Consensus 434 v~~--~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~ 511 (791)
T KOG1222|consen 434 VLS--GTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAG 511 (791)
T ss_pred HHh--cCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 754 23334444444444566655443322222222 223333
Q ss_pred HHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHH
Q 048757 492 LARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK--HEGVRQEAAGALWNLSFDDRNREAIAA 569 (864)
Q Consensus 492 ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~i~~ 569 (864)
.++..+++..-..++++|++|... .-.-..++.+...+|.+-.-|... ..+++...+-+++.++.+......+..
T Consensus 512 i~~nd~~E~F~~EClGtlanL~v~---dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~ 588 (791)
T KOG1222|consen 512 IAKNDNSESFGLECLGTLANLKVT---DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAP 588 (791)
T ss_pred HhhcCchHHHHHHHHHHHhhcccC---CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCc
Confidence 444434455556677777777753 233456677778888887776653 345777777788888888888888888
Q ss_pred CCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-Ccc
Q 048757 570 AGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR-EGGVAPLIALARSAVVDVHETAAGALWNLAF-NPG 647 (864)
Q Consensus 570 ~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~ 647 (864)
.+.|+.|+++|+.|... .+.......+...+..++..|..+.+ ...-..|+.++++.+.++|..+-.+|--++. +.+
T Consensus 589 a~~i~tlieLL~a~QeD-DEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~E 667 (791)
T KOG1222|consen 589 AKLIDTLIELLQACQED-DEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKE 667 (791)
T ss_pred cccHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHH
Confidence 89999999999986544 44445556666666667666666665 4555678999999999999999999999987 566
Q ss_pred cHHHHHhC
Q 048757 648 NALCIVEG 655 (864)
Q Consensus 648 ~~~~i~~~ 655 (864)
+..+|..+
T Consensus 668 WAKrI~~E 675 (791)
T KOG1222|consen 668 WAKRIAGE 675 (791)
T ss_pred HHHHHhhh
Confidence 77666643
No 34
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.45 E-value=4.3e-12 Score=127.65 Aligned_cols=200 Identities=23% Similarity=0.175 Sum_probs=176.3
Q ss_pred HhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 048757 481 ARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 481 ~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~ 560 (864)
.+.+.++.|+.+|+..++|.+++.+..++.+.+. .+.++..+.+.|+++.+..++.++++.+++.|+.+|.|++.+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa----f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~ 84 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA----FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN 84 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc----ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC
Confidence 4667789999999987789999999999999987 678999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 048757 561 DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALW 640 (864)
Q Consensus 561 ~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 640 (864)
.+++..|.. .++.+.+.+.+ .+-+..++..++++|.+|+...+.+..+.. .++.++.+|.+++..++..+.++|.
T Consensus 85 ~en~~~Ik~--~i~~Vc~~~~s-~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~~G~~~~k~~vLk~L~ 159 (254)
T PF04826_consen 85 DENQEQIKM--YIPQVCEETVS-SPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLSSGSEKTKVQVLKVLV 159 (254)
T ss_pred hhhHHHHHH--HHHHHHHHHhc-CCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999887754 57777777665 234778999999999999988877777754 7999999999999999999999999
Q ss_pred HhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 641 NLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 641 ~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
||+.++.....+....++..++.++..+.+..+-..+.....|+..+-.
T Consensus 160 nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 160 NLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999887667777778888888766655
No 35
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.41 E-value=3.1e-13 Score=155.02 Aligned_cols=120 Identities=28% Similarity=0.541 Sum_probs=72.6
Q ss_pred HHHHHHhcCCCCcEEEecCC-CCch--H----HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCC
Q 048757 23 AAESLSSRCTNLQALWFRGA-LSAD--A----MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRI 95 (864)
Q Consensus 23 ~l~~i~~~~~~L~~L~l~~~-~~~~--~----l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i 95 (864)
.+..+...|++|+.|++++| .... . .....|++|++|++++|..++|.++..++..|++|++|.+ ..|..+
T Consensus 205 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l--~~c~~l 282 (482)
T KOG1947|consen 205 SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSL--SNCSNL 282 (482)
T ss_pred hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEcc--CCCCcc
Confidence 35556666666666666652 2111 0 1222556666666666666666666666666666666666 556666
Q ss_pred CHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCC
Q 048757 96 SSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDS 144 (864)
Q Consensus 96 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 144 (864)
|+.|+..++..||.|++|++++|..+++.++..+..+||+|+.|.+.++
T Consensus 283 t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 283 TDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred chhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 6666666666666666666666666666666666666666555554443
No 36
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.39 E-value=1.8e-10 Score=124.21 Aligned_cols=383 Identities=16% Similarity=0.102 Sum_probs=254.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhC-Cch
Q 048757 314 LLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIANLSV-DSK 390 (864)
Q Consensus 314 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~L~~-~~~ 390 (864)
++.-+-+.||+....|..-..|++.+..++ +..+.+.|+++.+..++.. +..+.+...+..+..++. +..
T Consensus 14 ~l~~L~~~dpe~lvrai~~~kN~vig~~~~-------K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd 86 (678)
T KOG1293|consen 14 LLYRLLHLDPEQLVRAIYMSKNLVIGFTDN-------KETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQD 86 (678)
T ss_pred HHHhhhcCCHHHHHHHHHHhcchhhcCCCc-------cchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccc
Confidence 445566778888888888888887776654 3468899999999999875 446677677777877766 567
Q ss_pred hHHHHHhcCcHHHHHHHHccCC-HHHHHHHHHHHHHhcCCCCcHH---HHHhhCcHHHHHHHHcccCCCCHHHHHHHHHH
Q 048757 391 VAKAVSENGGIDILADLARSTN-RLVAEEVVGGLWNLSVGEDHKG---AIARAGGIKALVDLIFKWSSWNDGVLERAAGA 466 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~Ls~~~~~~~---~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~ 466 (864)
....+.+.+.++.|++++.+++ ..+.+..++.+.++-.....+. .......++.+..++. -+.+....--+..
T Consensus 87 ~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s---~~lk~~~~l~~~~ 163 (678)
T KOG1293|consen 87 KVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYS---IELKYISRLDVSR 163 (678)
T ss_pred hHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHh---hhhhhhhhhhhhh
Confidence 7888999999999999999888 7799999999999966443222 2233344555544442 1233333333444
Q ss_pred HHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHH---HHhhcCCCCc-ccchhhhccChHH--HHHHHhc
Q 048757 467 LANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALA---NLVAHGDSNS-NNAAVGLETGALE--ALVQLTF 540 (864)
Q Consensus 467 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~---~L~~~~~~~~-~~~~~~~~~~~i~--~L~~lL~ 540 (864)
..+++.....+......|..+.+.-++.. .+..+|..|..+++ ++...++... .......+.|..+ .+.++++
T Consensus 164 ~a~~s~~~~hq~Il~Na~i~ekI~~l~~~-~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k 242 (678)
T KOG1293|consen 164 AAHLSSTKDHQLILCNAGILEKINILLMY-LSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLK 242 (678)
T ss_pred hccccccchhhheeccccchhhHHHHHHh-hhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhh
Confidence 55555555556566666766666655554 34677888888888 5555321110 1112233344444 2334555
Q ss_pred CCCHHHHHHHHHHHHHh---------------------------------------------------------------
Q 048757 541 SKHEGVRQEAAGALWNL--------------------------------------------------------------- 557 (864)
Q Consensus 541 ~~~~~v~~~a~~~L~~L--------------------------------------------------------------- 557 (864)
+++...+..++.++.++
T Consensus 243 ~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~ 322 (678)
T KOG1293|consen 243 DPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQH 322 (678)
T ss_pred CCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHh
Confidence 55544444444444333
Q ss_pred -------------------cCChhhHHHHHHCCCh----------------------HHHHHHHHhcCCCCHHHHHHHHH
Q 048757 558 -------------------SFDDRNREAIAAAGGV----------------------EALVALVRSCSSSSQGLQERAAG 596 (864)
Q Consensus 558 -------------------s~~~~~~~~i~~~~~i----------------------~~Lv~lL~~~~~~~~~v~~~A~~ 596 (864)
+..++++..+.+...+ ..+..+. ...+...+.+|+.
T Consensus 323 e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~---~~kd~~~~aaa~l 399 (678)
T KOG1293|consen 323 EEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLP---PIKDHDFVAAALL 399 (678)
T ss_pred hhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHcccc---ccccHHHHHHHHH
Confidence 0111112111111100 0000000 1245677778888
Q ss_pred HHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHH
Q 048757 597 ALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMAR 674 (864)
Q Consensus 597 aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r 674 (864)
++.+++++ ...+..+....+.++|++++.+++..|...+.++++|+.. +.+.+..+++.|||+.|..++.+.+ +.+|
T Consensus 400 ~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~-~n~r 478 (678)
T KOG1293|consen 400 CLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPD-FNSR 478 (678)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCC-chHH
Confidence 88888877 6667677788999999999999999999999999999977 8888999999999999999999986 8899
Q ss_pred HHHHHHHHHhhcCCcccee----------eecccccCCCcccchHHH
Q 048757 675 FMAALALAYIVDGRMEDIA----------SIGSSLEGTSESENLDVI 711 (864)
Q Consensus 675 ~~aa~aL~~l~~~~~~~~~----------~~~~ll~~~~~~v~~~~~ 711 (864)
..+.|+|+++..+....+. .+..+..|++..|+...-
T Consensus 479 ~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f 525 (678)
T KOG1293|consen 479 ANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF 525 (678)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999885432 233366777777766553
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=1.9e-11 Score=131.83 Aligned_cols=162 Identities=21% Similarity=0.214 Sum_probs=71.6
Q ss_pred cccceeeeecCCCCCHHHHHHHH---hCC-CCcceEEeccCCCCCCCHHHHHH---HHhcCcCcCeeeecccCCCcHHHH
Q 048757 54 RRLREINVEFCRELTDAIFSAIV---ARH-EMLEILHFGLDVCDRISSDAIKT---VAYCCPKLRRLWLSGVREVNGDAI 126 (864)
Q Consensus 54 ~~L~~L~l~~c~~l~d~~l~~l~---~~~-~~L~~L~l~~~~c~~i~~~~l~~---l~~~~~~L~~L~l~~~~~l~~~~l 126 (864)
++|++|++++|. +++.++..+. ..+ ++|+.|++ ++|. ++..+... ....+++|++|++++|. +++.++
T Consensus 108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L--~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~ 182 (319)
T cd00116 108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVL--GRNR-LEGASCEALAKALRANRDLKELNLANNG-IGDAGI 182 (319)
T ss_pred CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEc--CCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHH
Confidence 335555555554 4443333322 122 45555555 4342 33222222 22234455555555554 444444
Q ss_pred HHHHhc---CCCccEEeccCCCCCCHHHhc-------CCCCcCEEEEeCCCCCCHHHHHHHHhcC----CCCcEEecCCC
Q 048757 127 NALAKQ---CRQLVEVGFIDSGGVDEAALE-------NLSSVRYLSIAGTRNLNWSSAAIAWSKL----TSLVGLDTSRT 192 (864)
Q Consensus 127 ~~l~~~---~~~L~~L~l~~c~~i~~~~~~-------~~~~L~~L~l~~c~~~~~~~l~~l~~~~----~~L~~L~l~~~ 192 (864)
..+... +++|++|++++|. +++.+.. .+++|++|++++| .+++.++..+...+ +.|+.|+++++
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC
Confidence 433322 2355555555542 3333221 4455555555554 24444444433332 45555555552
Q ss_pred CC---CHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 193 NI---NLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 193 ~~---~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
.. +...+.+.+...++|+.++++++..-++
T Consensus 261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 261 DITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 22 3334444444445555555555444433
No 38
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.33 E-value=4e-10 Score=129.82 Aligned_cols=181 Identities=17% Similarity=0.226 Sum_probs=127.1
Q ss_pred CCcEEEecCCCCchH-HHHhCCcccceeeeecCCCCCHHHHH-----------HHH--hCCCCcceEEeccCCCCCCCHH
Q 048757 33 NLQALWFRGALSADA-MIILQARRLREINVEFCRELTDAIFS-----------AIV--ARHEMLEILHFGLDVCDRISSD 98 (864)
Q Consensus 33 ~L~~L~l~~~~~~~~-l~~~~~~~L~~L~l~~c~~l~d~~l~-----------~l~--~~~~~L~~L~l~~~~c~~i~~~ 98 (864)
++.+.++.+...... +...+...|++|.+.++..+...... .+. ..-.+|++|++ ++-..++..
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI--~G~~~~s~~ 138 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRKQDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDI--SGSELFSNG 138 (699)
T ss_pred eeEEeeccceecchhHHHHHhhccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCc--cccchhhcc
Confidence 477777777654433 22234555899988776644332222 111 22478999999 788888888
Q ss_pred HHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHH
Q 048757 99 AIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAW 178 (864)
Q Consensus 99 ~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~ 178 (864)
....++.-+|.|++|.++|-. +..+.+..++.++|+|..||+|++.--+-.|+.++++|+.|.+.+-.--+..-+..+.
T Consensus 139 W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 899999999999999999977 5455588899999999999999975333467779999999999775444445566676
Q ss_pred hcCCCCcEEecCC--CCCCHHHHHHHh---cCCCCCcEEEccCC
Q 048757 179 SKLTSLVGLDTSR--TNINLSSVTRLL---SSSRNLKVLIALNC 217 (864)
Q Consensus 179 ~~~~~L~~L~l~~--~~~~~~~l~~~~---~~~~~L~~L~~~~c 217 (864)
++++|+.||+|. .......+.+++ ..+|+|+.|+.++.
T Consensus 218 -~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 218 -NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred -cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 599999999999 222223333333 34678888877643
No 39
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.32 E-value=9.5e-10 Score=127.50 Aligned_cols=427 Identities=15% Similarity=0.105 Sum_probs=270.5
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-C
Q 048757 310 GATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-D 388 (864)
Q Consensus 310 gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~ 388 (864)
.+..+.+-++++++.+|..|..+++++...+ +. ...++.+.+++.++++.+|..|+-++..+.. +
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~-------------~~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~ 145 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPE-------------MA-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKD 145 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH-------------HH-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcccc-------------hh-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Confidence 3567788889999999999999999986211 22 3367889999999999999999999999887 4
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh-cCCCCcHHHHHhhCcHHHHHHHHccc-CCCCHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNL-SVGEDHKGAIARAGGIKALVDLIFKW-SSWNDGVLERAAGA 466 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L-s~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~v~~~a~~~ 466 (864)
|+.- ... .++.+.+++.+.++.++..|+.++..+ ..++... ..++.+++.|.+. ...++-.+..+.++
T Consensus 146 p~~~---~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~------~~~~~~~~~L~~~l~~~~~~~q~~il~~ 215 (526)
T PF01602_consen 146 PDLV---EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK------SLIPKLIRILCQLLSDPDPWLQIKILRL 215 (526)
T ss_dssp HCCH---HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT------THHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHH---HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh------hhHHHHHHHhhhcccccchHHHHHHHHH
Confidence 5422 122 588899999999999999999999999 2211101 2344444443321 35788888888999
Q ss_pred HHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHH
Q 048757 467 LANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGV 546 (864)
Q Consensus 467 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 546 (864)
+..++..+..... ....++.+..++++ .++.+...++.++..+... +. .-..+++.|..++.++++.+
T Consensus 216 l~~~~~~~~~~~~--~~~~i~~l~~~l~s-~~~~V~~e~~~~i~~l~~~----~~-----~~~~~~~~L~~lL~s~~~nv 283 (526)
T PF01602_consen 216 LRRYAPMEPEDAD--KNRIIEPLLNLLQS-SSPSVVYEAIRLIIKLSPS----PE-----LLQKAINPLIKLLSSSDPNV 283 (526)
T ss_dssp HTTSTSSSHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSSS----HH-----HHHHHHHHHHHHHTSSSHHH
T ss_pred HHhcccCChhhhh--HHHHHHHHHHHhhc-cccHHHHHHHHHHHHhhcc----hH-----HHHhhHHHHHHHhhcccchh
Confidence 8888765542210 04567888888887 4688999999999988752 22 23467899999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHc-
Q 048757 547 RQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALAR- 625 (864)
Q Consensus 547 ~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~- 625 (864)
+..++..|..++... ...+ . .....+..+.. ++++.++..++.+|..++....... .++.|.+.++
T Consensus 284 r~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~--~~d~~Ir~~~l~lL~~l~~~~n~~~------Il~eL~~~l~~ 350 (526)
T PF01602_consen 284 RYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLY--DDDPSIRKKALDLLYKLANESNVKE------ILDELLKYLSE 350 (526)
T ss_dssp HHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHC--SSSHHHHHHHHHHHHHH--HHHHHH------HHHHHHHHHHH
T ss_pred ehhHHHHHHHhhccc--chhh-h--hhhhhhheecC--CCChhHHHHHHHHHhhcccccchhh------HHHHHHHHHHh
Confidence 999999999997764 1112 2 23334445552 3789999999999998886543332 4666788884
Q ss_pred cCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcccee----eeccccc
Q 048757 626 SAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIA----SIGSSLE 700 (864)
Q Consensus 626 ~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~----~~~~ll~ 700 (864)
..+++++..++..++.++. +++.... .++.+++++..++ +.+...+...+.++....++... .+...+.
T Consensus 351 ~~d~~~~~~~i~~I~~la~~~~~~~~~-----~v~~l~~ll~~~~-~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~ 424 (526)
T PF01602_consen 351 LSDPDFRRELIKAIGDLAEKFPPDAEW-----YVDTLLKLLEISG-DYVSNEIINVIRDLLSNNPELREKILKKLIELLE 424 (526)
T ss_dssp C--HHHHHHHHHHHHHHHHHHGSSHHH-----HHHHHHHHHHCTG-GGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHT
T ss_pred ccchhhhhhHHHHHHHHHhccCchHHH-----HHHHHHHhhhhcc-ccccchHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 4478899999999999886 4333322 3457777777654 44555566666666655554322 2222333
Q ss_pred CCCcccchHHHHHHHHHHHHhhc---cc-ccchhhhhHHHHhccChhhHHHHhhccchhHHhccccccCcccccccccch
Q 048757 701 GTSESENLDVIRRMALKHIEDFC---AG-RIALKHIEDFVRSFSDPQAFATALASAVPKSLAQITEGARIPEAAHLRCSG 776 (864)
Q Consensus 701 ~~~~~v~~~~~~~~al~~l~~~~---~g-~~~~~~i~~l~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 776 (864)
+... ..+.+.++.-+|.+. .. ......+..++..+.+...........++..+...... .+.. .
T Consensus 425 ~~~~----~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~---~~~~-----~ 492 (526)
T PF01602_consen 425 DISS----PEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPE---NEVQ-----N 492 (526)
T ss_dssp SSSS----HHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCS---TTHH-----H
T ss_pred HhhH----HHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCc---hhhH-----H
Confidence 3221 122233444555554 11 12333444444443332222222222333333321111 0111 1
Q ss_pred hhHHHHHHHhc--CCcHHHHHHHHHHHHh
Q 048757 777 AEIGRFVSMLR--NPSSILKACAAVALLQ 803 (864)
Q Consensus 777 ~~i~~lv~~l~--~~~~~~~~~Aa~al~~ 803 (864)
..++.+..+.. +.++++|.+|-+.+.-
T Consensus 493 ~i~~~~~~~~~~~s~~~evr~Ra~~y~~l 521 (526)
T PF01602_consen 493 EILQFLLSLATEDSSDPEVRDRAREYLRL 521 (526)
T ss_dssp HHHHHHHCHHHHS-SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 35577888888 8999999999887643
No 40
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.30 E-value=2.4e-09 Score=114.78 Aligned_cols=324 Identities=14% Similarity=0.090 Sum_probs=234.6
Q ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHh-----CCHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048757 311 ATLLLSLMES-SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRH-----GGVRLLLDLARSPPEGLQSEVAKAIAN 384 (864)
Q Consensus 311 v~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~-----~~i~~L~~lL~~~~~~~~~~a~~~L~~ 384 (864)
+..++.+++. ..+++..+....+..|...+. .+...+.+. ....+.+.+|..+|.-++..++..|..
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~-------~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~ 127 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDD-------TRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAK 127 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhch-------HHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHH
Confidence 6788888864 568888888888888876553 334444443 456778889988899999999999999
Q ss_pred HhCC-chhHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHH
Q 048757 385 LSVD-SKVAKAVSENGGIDILADLARST-NRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLER 462 (864)
Q Consensus 385 L~~~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~ 462 (864)
+... +.........--.+-|...+++. +...+..|+.+|..|...++.|..+.+.++++.|+++|+. ...+..++..
T Consensus 128 l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~-~~~~~Ql~Y~ 206 (429)
T cd00256 128 LACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSN-ATLGFQLQYQ 206 (429)
T ss_pred HHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhh-ccccHHHHHH
Confidence 8652 22100000000122344455543 4667788889999999999999999999999999999975 2236688999
Q ss_pred HHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCC---CcccchhhhccChHHHHHHHh
Q 048757 463 AAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDS---NSNNAAVGLETGALEALVQLT 539 (864)
Q Consensus 463 a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~---~~~~~~~~~~~~~i~~L~~lL 539 (864)
++-++|-++.+++....+...+.|+.|+++++....+.+-+.++.+|.|+...+.. .......+++.|..+.+-.+.
T Consensus 207 ~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 207 SIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred HHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 99999999999886667777899999999999977788888999999999975321 112334566667655444443
Q ss_pred cC--CCHHHHHHHHH-------HHHHhcCChh------------------------hHHHHHHCC--ChHHHHHHHHhcC
Q 048757 540 FS--KHEGVRQEAAG-------ALWNLSFDDR------------------------NREAIAAAG--GVEALVALVRSCS 584 (864)
Q Consensus 540 ~~--~~~~v~~~a~~-------~L~~Ls~~~~------------------------~~~~i~~~~--~i~~Lv~lL~~~~ 584 (864)
.. .|+++.+..-. -+..++..++ +-..+-+.+ .+..|+++|..
T Consensus 287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~-- 364 (429)
T cd00256 287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET-- 364 (429)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 32 36665433221 2233333222 223333333 47889999965
Q ss_pred CCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 585 SSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 585 ~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
+.++.+..-|+.=++.+++. |..|..+.+-|+=..+++++.+++++|+..|..++..|..
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 46888888899999999987 8888888889999999999999999999999999988753
No 41
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.27 E-value=7.8e-12 Score=143.49 Aligned_cols=159 Identities=23% Similarity=0.314 Sum_probs=120.1
Q ss_pred CCCCcEEEecCCCCc--hH---HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCC-CCCCCHHH--HHH
Q 048757 31 CTNLQALWFRGALSA--DA---MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDV-CDRISSDA--IKT 102 (864)
Q Consensus 31 ~~~L~~L~l~~~~~~--~~---l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~-c~~i~~~~--l~~ 102 (864)
+..+..+++..+... .. .....+++|+.|.+.+|..+++.++..++..|++|+.|++ ++ |..++..+ ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~~~~~~~~~~~ 237 (482)
T KOG1947|consen 160 LANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDL--SGCCLLITLSPLLLLL 237 (482)
T ss_pred HHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecc--cCcccccccchhHhhh
Confidence 444555555555432 11 1122578888888888888888888888888888888888 55 44444333 444
Q ss_pred HHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc----CCCCcCEEEEeCCCCCCHHHHHHHH
Q 048757 103 VAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE----NLSSVRYLSIAGTRNLNWSSAAIAW 178 (864)
Q Consensus 103 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~~L~~L~l~~c~~~~~~~l~~l~ 178 (864)
+...|++|++|++++|..++|.++..++..||+|++|.+.+|..+|+.++. .|++|++|++++|..++|.++..+.
T Consensus 238 ~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~ 317 (482)
T KOG1947|consen 238 LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL 317 (482)
T ss_pred hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence 667788888888888888888888888888888888888888888888887 7888888888888888888888888
Q ss_pred hcCCCCcEEecCC
Q 048757 179 SKLTSLVGLDTSR 191 (864)
Q Consensus 179 ~~~~~L~~L~l~~ 191 (864)
.+|++|+.+.+..
T Consensus 318 ~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 318 KNCPNLRELKLLS 330 (482)
T ss_pred HhCcchhhhhhhh
Confidence 7888877776655
No 42
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.24 E-value=2.9e-09 Score=123.45 Aligned_cols=326 Identities=17% Similarity=0.118 Sum_probs=233.0
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
.|.+.+++++.+.|...++-+-.++..+...+++. .+. ++..+.+-|.++++.++..|+++|+++. +
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~---------~~l---~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~ 108 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL---------LIL---IINSLQKDLNSPNPYIRGLALRTLSNIR-T 108 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH---------HHH---HHHHHHHHHCSSSHHHHHHHHHHHHHH--S
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH---------HHH---HHHHHHHhhcCCCHHHHHHHHhhhhhhc-c
Confidence 45678889999999999999998888887655421 111 5667777788999999999999999987 4
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
++.... .++.+.+++.++++.||..|+.++.++.. +|+. +... .++.+.+++. +.++.++..|+.++
T Consensus 109 ~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~---d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 109 PEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLS---DKDPSVVSAALSLL 176 (526)
T ss_dssp HHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTT---HSSHHHHHHHHHHH
T ss_pred cchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhcc---CCcchhHHHHHHHH
Confidence 433332 36778889999999999999999999865 3332 2222 5788889986 47789999999999
Q ss_pred HHhcCCCcchHHHHhcCcHHHHHHHHH---ccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCH
Q 048757 468 ANLAADDKCSLEVARAGGVHALVMLAR---SFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHE 544 (864)
Q Consensus 468 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~---~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 544 (864)
..+ ..++ .... ..++.++..+. ...++..+..++..+..++.. .+..... ...++.+..++.+.++
T Consensus 177 ~~i-~~~~---~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~---~~~~~~~---~~~i~~l~~~l~s~~~ 245 (526)
T PF01602_consen 177 SEI-KCND---DSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM---EPEDADK---NRIIEPLLNLLQSSSP 245 (526)
T ss_dssp HHH-HCTH---HHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS---SHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHH-ccCc---chhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC---ChhhhhH---HHHHHHHHHHhhcccc
Confidence 998 2111 1111 33444444443 225688888888888888763 2221100 4578889999998899
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHH
Q 048757 545 GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALA 624 (864)
Q Consensus 545 ~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL 624 (864)
.+..+++.++..+...+. .-..+++.|..++.+ +++.++..++..|..++... . .... .....+..+
T Consensus 246 ~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s---~~~nvr~~~L~~L~~l~~~~--~-~~v~--~~~~~~~~l 312 (526)
T PF01602_consen 246 SVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS---SDPNVRYIALDSLSQLAQSN--P-PAVF--NQSLILFFL 312 (526)
T ss_dssp HHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS---SSHHHHHHHHHHHHHHCCHC--H-HHHG--THHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc---ccchhehhHHHHHHHhhccc--c-hhhh--hhhhhhhee
Confidence 999999999999987765 223478899999987 89999999999999998764 1 1222 233334455
Q ss_pred c-cCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 625 R-SAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 625 ~-~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
. ++++.++..++..|..++.. .|... .++.|...+.+..++..+..++.+++.++...+
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l~~~-~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKLANE-SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--H-HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred cCCCChhHHHHHHHHHhhcccc-cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 5 88999999999999999953 33322 566888888544347799999998887776544
No 43
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.3e-08 Score=117.10 Aligned_cols=448 Identities=16% Similarity=0.115 Sum_probs=273.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhCC-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSVD- 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~~- 388 (864)
...|+.-|.++|.++|..|-.++.++.. ....++.|..++.+ .++++|..|+-.++.+...
T Consensus 6 l~qLl~~l~spDn~vr~~Ae~~l~~~~~-----------------~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~ 68 (1075)
T KOG2171|consen 6 LEQLLQQLLSPDNEVRRQAEEALETLAK-----------------TEPLLPALAHILATSADPQVRQLAAVLLRKLLTKH 68 (1075)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhhc-----------------ccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 4567888889999999999999988642 12377888888865 7899999999999987663
Q ss_pred -----chhHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHH
Q 048757 389 -----SKVAKAVSENGGIDILAD-LARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLER 462 (864)
Q Consensus 389 -----~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~ 462 (864)
.+.+..+. ..|+. +.+...+.++...+.++..++.+.--- .-.+.++.|.+.. +++++..|+.
T Consensus 69 w~~l~~e~~~sik-----s~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~---~S~~~~~rE~ 137 (1075)
T KOG2171|consen 69 WSRLSAEVQQSIK-----SSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQST---KSPNPSLRES 137 (1075)
T ss_pred hhcCCHHHHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHh---cCCCcchhHH
Confidence 34444443 23444 345667889999999999987642100 1122344444444 4688999999
Q ss_pred HHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHH----
Q 048757 463 AAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL---- 538 (864)
Q Consensus 463 a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~l---- 538 (864)
|..+|+.+...-.+...-.-....+.+.+.+.+++.+ ++..+++|+...+...+.+...+..+. ..+|.++..
T Consensus 138 al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~ 214 (1075)
T KOG2171|consen 138 ALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEV 214 (1075)
T ss_pred HHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhh
Confidence 9999999976533221111112234445555555545 999999999999886432233333222 345555544
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCh-hh-HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch-hhHHhhh--
Q 048757 539 TFSKHEGVRQEAAGALWNLSFDD-RN-REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA-NSIAIGR-- 613 (864)
Q Consensus 539 L~~~~~~v~~~a~~~L~~Ls~~~-~~-~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~-~~~~i~~-- 613 (864)
+..++.+.-..+..+|..++... +. +..+.+ .++.-..+..+ ..-++.+|..|...|..++.... .++....
T Consensus 215 i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~ 291 (1075)
T KOG2171|consen 215 IQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPAMCKKLALLG 291 (1075)
T ss_pred hhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHHHhhhchhhh
Confidence 44567777778888888887653 32 222221 34455555554 34578999999999999988732 2222222
Q ss_pred cCCHHHHHHHHccCC----------------HHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHH
Q 048757 614 EGGVAPLIALARSAV----------------VDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMA 677 (864)
Q Consensus 614 ~~~i~~Lv~lL~~~~----------------~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~a 677 (864)
...++.++.++.+.. +.-...|..+|-.++.+-+-+. +-.-..+.+..++.+++ ..-|..|
T Consensus 292 ~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~-w~~R~Aa 368 (1075)
T KOG2171|consen 292 HTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTE-WKERHAA 368 (1075)
T ss_pred ccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCC-HHHHHHH
Confidence 233445555543211 1235568888888876432110 01123456777888886 8899999
Q ss_pred HHHHHHhhcCCcccee--------eecccccCCCcccchHHHHHHHHHHHHhhcccccc---hhhhhH-HHH-hccChhh
Q 048757 678 ALALAYIVDGRMEDIA--------SIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIA---LKHIED-FVR-SFSDPQA 744 (864)
Q Consensus 678 a~aL~~l~~~~~~~~~--------~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~---~~~i~~-l~~-~~~~~~~ 744 (864)
..|++.+++|..+.+. .+..+++|++..|+..+. .|+.+++..-.-.+. .+.+.+ ++. ..+..+.
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~--naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~ 446 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAAL--NAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNV 446 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH--HHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCch
Confidence 9999999999996554 355589999999988886 555544332111111 123332 232 2233334
Q ss_pred HHHHhhccchhHHhccccccCcccccccccchhhHH-HHHHHhcCCcHHHHHHHHHHHH
Q 048757 745 FATALASAVPKSLAQITEGARIPEAAHLRCSGAEIG-RFVSMLRNPSSILKACAAVALL 802 (864)
Q Consensus 745 ~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~i~-~lv~~l~~~~~~~~~~Aa~al~ 802 (864)
+..+.++.|+..+.+-.....+. ++-..... .|..+++++++.+|+.|+.||.
T Consensus 447 rV~ahAa~al~nf~E~~~~~~l~-----pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIa 500 (1075)
T KOG2171|consen 447 RVQAHAAAALVNFSEECDKSILE-----PYLDGLMEKKLLLLLQSSKPYVQEQAVTAIA 500 (1075)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHH-----HHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 44444445555554422111111 11111223 5666778999999999999993
No 44
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.18 E-value=2.5e-08 Score=107.12 Aligned_cols=321 Identities=17% Similarity=0.091 Sum_probs=226.9
Q ss_pred CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC-CchhHHHHHhc-----CcHHHHHHHHccCCHHHHHHHHHHHHHhcC-C
Q 048757 358 GGVRLLLDLARS-PPEGLQSEVAKAIANLSV-DSKVAKAVSEN-----GGIDILADLARSTNRLVAEEVVGGLWNLSV-G 429 (864)
Q Consensus 358 ~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~-----g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~ 429 (864)
.++..++.+|+. .++++....+..+..|.. +|.....+.+. ....+++.+|..++..+...+...|..+.. .
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 456677777765 667777788888888766 44444445543 457788889988899999999999999854 2
Q ss_pred CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccC-chhHHHHHHHH
Q 048757 430 EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFM-FEGVQEQAARA 508 (864)
Q Consensus 430 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~-~~~v~~~a~~a 508 (864)
+.........-....+...+.. ..+...+..++.+|..|...++.|..+.+.++++.|+.+++... +..++..++-+
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~--~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNN--ITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhc--cCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 2221111111123344555543 23456677888999999999999999999999999999998754 46888999999
Q ss_pred HHHHhhcCCCCcccchhhhccChHHHHHHHhcC-CCHHHHHHHHHHHHHhcCCh-------hhHHHHHHCCChHHHHHHH
Q 048757 509 LANLVAHGDSNSNNAAVGLETGALEALVQLTFS-KHEGVRQEAAGALWNLSFDD-------RNREAIAAAGGVEALVALV 580 (864)
Q Consensus 509 L~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~Ls~~~-------~~~~~i~~~~~i~~Lv~lL 580 (864)
++-|+.. +.....+...+.++.|+++++. ..+++.+-++.+|.|+...+ .....++..| ++.+++.|
T Consensus 211 lWlLSF~----~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~-l~~~l~~L 285 (429)
T cd00256 211 IWLLTFN----PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCK-VLKTLQSL 285 (429)
T ss_pred HHHHhcc----HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcC-hHHHHHHH
Confidence 9999984 3455566678999999999876 46778899999999998743 1234455554 45566666
Q ss_pred HhcCCCCHHHHHHHHHHHH-------Hhcc---------------Cc---------hhhHHhhhc--CCHHHHHHHHc-c
Q 048757 581 RSCSSSSQGLQERAAGALW-------GLSL---------------SE---------ANSIAIGRE--GGVAPLIALAR-S 626 (864)
Q Consensus 581 ~~~~~~~~~v~~~A~~aL~-------~L~~---------------~~---------~~~~~i~~~--~~i~~Lv~lL~-~ 626 (864)
....-.|+++.+.....-- .++. +| ++...|.+. ..++.|+++|. +
T Consensus 286 ~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s 365 (429)
T cd00256 286 EQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETS 365 (429)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 6545567766553322211 1211 11 223333332 24578999994 5
Q ss_pred CCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 627 AVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 627 ~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
.++.+..-|+.=++.++. +|..+..+.+.|+=+.+++++.+++ +.+|..|..|+..+.-
T Consensus 366 ~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-~~Vr~eAL~avQklm~ 425 (429)
T cd00256 366 VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-PNVRYEALLAVQKLMV 425 (429)
T ss_pred CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 678888889999999988 6667777788999899999999986 8999999999876643
No 45
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.16 E-value=5.5e-10 Score=101.01 Aligned_cols=115 Identities=40% Similarity=0.494 Sum_probs=106.8
Q ss_pred hhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 048757 526 GLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS 604 (864)
Q Consensus 526 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~ 604 (864)
+.+.|+++.+++++.+.+..++..++.+|++++.+ ++.+..+.+.++++.+++++.+ +++.++..|+++|++++.+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALRNLAAG 79 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHHHHccC
Confidence 45789999999999999999999999999999998 7788888999999999999997 7999999999999999988
Q ss_pred c-hhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 605 E-ANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 605 ~-~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
. ..+..+.+.|+++.|++++++.+..+++.++++|.+|+
T Consensus 80 ~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4 66777888999999999999999999999999999987
No 46
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=5.7e-10 Score=120.36 Aligned_cols=81 Identities=23% Similarity=0.371 Sum_probs=34.0
Q ss_pred cCcCeeeecccCCCcHHHHHH---HHhcCCCccEEeccCCCCCCHHHhc-------CCCCcCEEEEeCCCCCCHHHHHH-
Q 048757 108 PKLRRLWLSGVREVNGDAINA---LAKQCRQLVEVGFIDSGGVDEAALE-------NLSSVRYLSIAGTRNLNWSSAAI- 176 (864)
Q Consensus 108 ~~L~~L~l~~~~~l~~~~l~~---l~~~~~~L~~L~l~~c~~i~~~~~~-------~~~~L~~L~l~~c~~~~~~~l~~- 176 (864)
++|++|++++|. ++..+... ....+++|++|++++|. +++.++. .+++|++|++++| .+++.+...
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l 213 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASAL 213 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHH
Confidence 445555555554 44222221 22234455555555542 3322221 3345555555554 233333222
Q ss_pred --HHhcCCCCcEEecCC
Q 048757 177 --AWSKLTSLVGLDTSR 191 (864)
Q Consensus 177 --l~~~~~~L~~L~l~~ 191 (864)
....+++|+.|++++
T Consensus 214 ~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 214 AETLASLKSLEVLNLGD 230 (319)
T ss_pred HHHhcccCCCCEEecCC
Confidence 223444555555555
No 47
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.11 E-value=1.5e-09 Score=98.05 Aligned_cols=116 Identities=39% Similarity=0.454 Sum_probs=105.5
Q ss_pred HHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 566 AIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 566 ~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
.+++.|+++.+++++.+ +++.++..++.+|++++.. ++.+..+.+.++++.+++++.++++.++..|+++|++++.
T Consensus 2 ~~~~~~~i~~l~~~l~~---~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~ 78 (120)
T cd00020 2 AVIQAGGLPALVSLLSS---SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA 78 (120)
T ss_pred hHHHcCChHHHHHHHHc---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc
Confidence 35678999999999997 7899999999999999988 8888899999999999999999999999999999999998
Q ss_pred Cc-ccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 645 NP-GNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 645 ~~-~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
+. .....+.+.|+++.|++++.+.+ ..++..+.++|.++.
T Consensus 79 ~~~~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~ 119 (120)
T cd00020 79 GPEDNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLA 119 (120)
T ss_pred CcHHHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhh
Confidence 66 45667888999999999998885 789999999999875
No 48
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=4.5e-08 Score=112.87 Aligned_cols=358 Identities=16% Similarity=0.080 Sum_probs=233.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHH----HHhcCCCHHHHHHHHHHHHHHh
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLL----DLARSPPEGLQSEVAKAIANLS 386 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~----~lL~~~~~~~~~~a~~~L~~L~ 386 (864)
++.|++-.+++++..|+.|..+|.++...-.+. ..+.++.+. +.+.+++..++..+++++...+
T Consensus 120 l~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~------------~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~ 187 (1075)
T KOG2171|consen 120 LQFLFQSTKSPNPSLRESALLILSSLPETFGNT------------LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFA 187 (1075)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc------------cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHH
Confidence 466667778899999999999999976433211 233344444 4455666569999999999977
Q ss_pred CCc-hhHHHHHhcC-cHHHHHHHH----ccCCHHHHHHHHHHHHHhcCCC-C-cHHHHHhhCcHHHHHHHHcccCCCCHH
Q 048757 387 VDS-KVAKAVSENG-GIDILADLA----RSTNRLVAEEVVGGLWNLSVGE-D-HKGAIARAGGIKALVDLIFKWSSWNDG 458 (864)
Q Consensus 387 ~~~-~~~~~i~~~g-~i~~Lv~lL----~~~~~~v~~~a~~aL~~Ls~~~-~-~~~~i~~~g~i~~L~~lL~~~~~~~~~ 458 (864)
..- ..+......+ -+|.++..+ ..++......+..+|..+.... . .+..+.+ .++..+++..+ .+-++.
T Consensus 188 ~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n-~~l~~~ 264 (1075)
T KOG2171|consen 188 EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKN-KELENS 264 (1075)
T ss_pred HHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhc-ccccHH
Confidence 632 2222222222 255555554 5567777788888888886532 2 2333333 45555666654 456789
Q ss_pred HHHHHHHHHHHhcCCCcchHHH---HhcCcHHHHHHHHHccCc---------------hhHHHHHHHHHHHHhhcCCCCc
Q 048757 459 VLERAAGALANLAADDKCSLEV---ARAGGVHALVMLARSFMF---------------EGVQEQAARALANLVAHGDSNS 520 (864)
Q Consensus 459 v~~~a~~~L~~L~~~~~~~~~i---~~~~~i~~Lv~ll~~~~~---------------~~v~~~a~~aL~~L~~~~~~~~ 520 (864)
+|..|..+|..++.....+... .-...++.++.++..... +.-...|..+|-.++.+-. +
T Consensus 265 ~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~--g 342 (1075)
T KOG2171|consen 265 IRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG--G 342 (1075)
T ss_pred HHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC--h
Confidence 9999999999998874322111 112234555555422110 1134567888888887521 1
Q ss_pred ccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh-hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048757 521 NNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDD-RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALW 599 (864)
Q Consensus 521 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~ 599 (864)
..+-.-.++.+-.++.+++..-|.+++.+|..++... +.-.... ...++..+..|.+ ++|.||.+|+.+++
T Consensus 343 ----~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~D---phprVr~AA~naig 414 (1075)
T KOG2171|consen 343 ----KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLND---PHPRVRYAALNAIG 414 (1075)
T ss_pred ----hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCC---CCHHHHHHHHHHHH
Confidence 1122345677778899999999999999999998763 2222222 2467777888887 99999999999999
Q ss_pred HhccC-chhhHHhhhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhcCC-cccHHHHHhCCcHHHHHHHhcCCCcHHHHHH
Q 048757 600 GLSLS-EANSIAIGREGGVAPLIALARSA-VVDVHETAAGALWNLAFN-PGNALCIVEGGGVQALIHLCSSSLSKMARFM 676 (864)
Q Consensus 600 ~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~ 676 (864)
.++.+ .+.-++-..+..++.|+..+.+. ++.|+.+|+.+|-|+... ++..-.=.=.+.++.++.+|..++++.+|..
T Consensus 415 Q~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~ 494 (1075)
T KOG2171|consen 415 QMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQ 494 (1075)
T ss_pred hhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 99998 55555556667788888888764 578999999999999862 2222111112344434445555556999999
Q ss_pred HHHHHHHhhcCCcccee
Q 048757 677 AALALAYIVDGRMEDIA 693 (864)
Q Consensus 677 aa~aL~~l~~~~~~~~~ 693 (864)
++.|++.+++...+.+-
T Consensus 495 vvtaIasvA~AA~~~F~ 511 (1075)
T KOG2171|consen 495 AVTAIASVADAAQEKFI 511 (1075)
T ss_pred HHHHHHHHHHHHhhhhH
Confidence 99999999987775433
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.8e-09 Score=108.52 Aligned_cols=206 Identities=17% Similarity=0.232 Sum_probs=105.1
Q ss_pred CCCeecCCCCCCCHHHHHHHHh---cCCCCcEEEecCCCCc-------hH---HHH--hCCcccceeeeecCCCCCH---
Q 048757 8 LWSSLDLRPYKFDTSAAESLSS---RCTNLQALWFRGALSA-------DA---MII--LQARRLREINVEFCRELTD--- 69 (864)
Q Consensus 8 lw~~ldL~~~~~~~~~l~~i~~---~~~~L~~L~l~~~~~~-------~~---l~~--~~~~~L~~L~l~~c~~l~d--- 69 (864)
-++.+||+++.++.+..+.+++ +-++|+..++++...- +. +.. ..||+|++||||..- +..
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA-~G~~g~ 109 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA-FGPKGI 109 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc-cCccch
Confidence 4567788887777765555544 3344555555554210 11 111 166677777777654 333
Q ss_pred HHHHHHHhCCCCcceEEeccCCCCCCCHHH----------------------------------------HHHHHhcCcC
Q 048757 70 AIFSAIVARHEMLEILHFGLDVCDRISSDA----------------------------------------IKTVAYCCPK 109 (864)
Q Consensus 70 ~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~----------------------------------------l~~l~~~~~~ 109 (864)
.++..+.++|.+|++|.| .+|. ++..+ +....+.+|.
T Consensus 110 ~~l~~ll~s~~~L~eL~L--~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYL--NNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred HHHHHHHHhccCHHHHhh--hcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 334444556667777766 5442 33333 2223344555
Q ss_pred cCeeeecccCCCcHHHHHHH---HhcCCCccEEeccCCCCCCHHHhc------CCCCcCEEEEeCCCCCCHH----HHHH
Q 048757 110 LRRLWLSGVREVNGDAINAL---AKQCRQLVEVGFIDSGGVDEAALE------NLSSVRYLSIAGTRNLNWS----SAAI 176 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~c~~i~~~~~~------~~~~L~~L~l~~c~~~~~~----~l~~ 176 (864)
|+.+.++.+. |..+++..+ ..+||+|+.|||.++..-...+.. ..++|+.|++++|- +.+. .+..
T Consensus 187 leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a 264 (382)
T KOG1909|consen 187 LEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA 264 (382)
T ss_pred cceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH
Confidence 5555555544 444433222 345666666666664432222222 44566666666663 3332 2333
Q ss_pred HHhcCCCCcEEecCCCCCCHH---HHHHHhcCCCCCcEEEccCCCC
Q 048757 177 AWSKLTSLVGLDTSRTNINLS---SVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 177 l~~~~~~L~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
+....|+|+.+++.+++++.+ .+...+...|.|..|.+++|..
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 344556666666666444333 2333333456666666666665
No 50
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.4e-08 Score=107.67 Aligned_cols=341 Identities=16% Similarity=0.090 Sum_probs=233.9
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHh-cccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 048757 311 ATLLLSLMESS-QQEVQERAAYAVATF-VVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 311 v~~L~~lL~~~-~~~v~~~a~~~L~~L-~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~ 387 (864)
+..|++-|+.. |+..|.+|+.-|+.+ .+++++.. ..+--...+|.|+.+|++ .+.+++..|+++|.+|+.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesL-------s~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e 241 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESL-------SGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCE 241 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhh-------ccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 45677777665 899999998887764 44554432 122335578999999987 679999999999999999
Q ss_pred -CchhHHHHHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHH
Q 048757 388 -DSKVAKAVSENGGIDILADL-ARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAG 465 (864)
Q Consensus 388 -~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~ 465 (864)
-|.....+++.++||.|++- +.-..-++.++++.+|..|+. ++-..+.++|++...+..+.- -+..+++.|..
T Consensus 242 vlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR--~H~~AiL~AG~l~a~LsylDF---FSi~aQR~Ala 316 (1051)
T KOG0168|consen 242 VLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR--RHPKAILQAGALSAVLSYLDF---FSIHAQRVALA 316 (1051)
T ss_pred hccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh--hccHHHHhcccHHHHHHHHHH---HHHHHHHHHHH
Confidence 68889999999999999884 455678899999999999985 344678899999999998863 45688999999
Q ss_pred HHHHhcCCC--cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC-
Q 048757 466 ALANLAADD--KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK- 542 (864)
Q Consensus 466 ~L~~L~~~~--~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~- 542 (864)
+-.|+|..- +.-..+ ...+|.|..+|...+ ....+.++-++.+++......++.-..+...|.+....+++.-.
T Consensus 317 iaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D-~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~ 393 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFV--MEALPLLTPLLSYQD-KKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTP 393 (1051)
T ss_pred HHHHHHhcCCCccchHH--HHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCc
Confidence 999999762 222333 256999999998864 56677788888888764433444445555555555444443221
Q ss_pred ---------------------CHH-----HHHHHHHHHHHh---------------------------------------
Q 048757 543 ---------------------HEG-----VRQEAAGALWNL--------------------------------------- 557 (864)
Q Consensus 543 ---------------------~~~-----v~~~a~~~L~~L--------------------------------------- 557 (864)
.+- .+...+.+|..+
T Consensus 394 t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~ 473 (1051)
T KOG0168|consen 394 TILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPV 473 (1051)
T ss_pred ccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcc
Confidence 110 001111111111
Q ss_pred ------------------------------------------cC-------------C---hhhHHHHH-HC--------
Q 048757 558 ------------------------------------------SF-------------D---DRNREAIA-AA-------- 570 (864)
Q Consensus 558 ------------------------------------------s~-------------~---~~~~~~i~-~~-------- 570 (864)
.. + ...|+.+. +.
T Consensus 474 e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~ 553 (1051)
T KOG0168|consen 474 EGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFG 553 (1051)
T ss_pred cceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHH
Confidence 00 0 00011111 11
Q ss_pred -CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--C-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-C
Q 048757 571 -GGVEALVALVRSCSSSSQGLQERAAGALWGLSL--S-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-N 645 (864)
Q Consensus 571 -~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~--~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~ 645 (864)
..++.|+++..+ +.++.||..++.+|..+.. + +..+..+.+...-..+..+|.+.+..|...|+...--|+. .
T Consensus 554 ~~llpVLveVYsS--sA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl 631 (1051)
T KOG0168|consen 554 KDLLPVLVEVYSS--SANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL 631 (1051)
T ss_pred HHHHHHHHHHHhc--cCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh
Confidence 246777777775 6789999999999998753 2 5556666677777888889999998888888877777775 3
Q ss_pred cc-cHHHHHhCCcHHHHHHHhcCC
Q 048757 646 PG-NALCIVEGGGVQALIHLCSSS 668 (864)
Q Consensus 646 ~~-~~~~i~~~g~v~~L~~ll~~~ 668 (864)
++ --..++++|++-..-+|....
T Consensus 632 pd~F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 632 PDTFSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred HHHhhhhHhhhhHHHHHHHHhccC
Confidence 43 234677888887777777633
No 51
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.99 E-value=1.6e-07 Score=96.88 Aligned_cols=324 Identities=14% Similarity=0.109 Sum_probs=231.6
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHH------hCCHHHHHHHhcCCCHHHHHHHHHHHH
Q 048757 311 ATLLLSLMESS-QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILR------HGGVRLLLDLARSPPEGLQSEVAKAIA 383 (864)
Q Consensus 311 v~~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~------~~~i~~L~~lL~~~~~~~~~~a~~~L~ 383 (864)
+..++.++.+. .++........+..+...+.. +...+.+ .-.-++.+.+|...+.-+...+.+++.
T Consensus 67 v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~s-------r~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils 139 (442)
T KOG2759|consen 67 VKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRS-------RVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILS 139 (442)
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHHhhCch-------HHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHH
Confidence 67788888764 366667777777776644432 1111111 223567788898888888888999999
Q ss_pred HHhCCchhHHHHHhcCc-HHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHH
Q 048757 384 NLSVDSKVAKAVSENGG-IDILADLARS-TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLE 461 (864)
Q Consensus 384 ~L~~~~~~~~~i~~~g~-i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~ 461 (864)
.++.....+....+-.. ...|-..+.+ .+......|+++|..+...++.|-.+....|+..++..+.+ ...+..++.
T Consensus 140 ~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s-~~~~~QlQY 218 (442)
T KOG2759|consen 140 KLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILAS-TKCGFQLQY 218 (442)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhc-cCcchhHHH
Confidence 98774322111111111 1223344444 56677788999999999999999999999999999999952 345678999
Q ss_pred HHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc---ccchhhhccChHHHHHHH
Q 048757 462 RAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNS---NNAAVGLETGALEALVQL 538 (864)
Q Consensus 462 ~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~---~~~~~~~~~~~i~~L~~l 538 (864)
....++|-|+.++...+.+...+.|+.|..+++....+.|-.-++.+++|+...++... +....++..++.+.+-.+
T Consensus 219 qsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L 298 (442)
T KOG2759|consen 219 QSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSL 298 (442)
T ss_pred HHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999988777777788899999999998778888999999999998643211 223456666666655544
Q ss_pred hcC--CCHHHHHHHH-------HHHHHhcCChhhHHH------------------------HHHC--CChHHHHHHHHhc
Q 048757 539 TFS--KHEGVRQEAA-------GALWNLSFDDRNREA------------------------IAAA--GGVEALVALVRSC 583 (864)
Q Consensus 539 L~~--~~~~v~~~a~-------~~L~~Ls~~~~~~~~------------------------i~~~--~~i~~Lv~lL~~~ 583 (864)
.+. .|+++....- .-...|+..+++..+ +-+. ..+..|+.+|..
T Consensus 299 ~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~- 377 (442)
T KOG2759|consen 299 EERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET- 377 (442)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc-
Confidence 433 3555443322 222334443332222 2221 358889999997
Q ss_pred CCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 584 SSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 584 ~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
+.+|.+..-|+.-++...+. |+.+..+.+.||=+.+++++.+++++|+.+|..|+..|..
T Consensus 378 -s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 378 -SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred -CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 56788888999999999987 9999999999999999999999999999999999988763
No 52
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=6e-08 Score=104.52 Aligned_cols=269 Identities=18% Similarity=0.105 Sum_probs=174.6
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHH--HHh---hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC
Q 048757 400 GIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGA--IAR---AGGIKALVDLIFKWSSWNDGVLERAAGALANLAADD 474 (864)
Q Consensus 400 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~--i~~---~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~ 474 (864)
.+|.|.++|.+++....+-|.++|.+++.+....-. +.. .-.+|.++++.+ ..++.+|..|..++-......
T Consensus 129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~---h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFK---HPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHh---CCChhHHHHHHhhhhheeecC
Confidence 378899999999999999999999999875421110 100 124677777776 468899999999887765544
Q ss_pred cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHH
Q 048757 475 KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGAL 554 (864)
Q Consensus 475 ~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 554 (864)
...-.+.-...+..+..+..+ .+++||.+.+.++..|-... ..+.+-.-.++++..+..-++.+++|-.+|++..
T Consensus 206 ~qal~~~iD~Fle~lFalanD-~~~eVRk~vC~alv~Llevr----~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALAND-EDPEVRKNVCRALVFLLEVR----PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHhc----HHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 322223334456777777766 57999999999999998631 1111112236777788888888999999999999
Q ss_pred HHhcCChhhHHHHHHC--CChHHHHHH----------HHhcCC-------------------------------------
Q 048757 555 WNLSFDDRNREAIAAA--GGVEALVAL----------VRSCSS------------------------------------- 585 (864)
Q Consensus 555 ~~Ls~~~~~~~~i~~~--~~i~~Lv~l----------L~~~~~------------------------------------- 585 (864)
..++..+..+..+..+ ..+|.|++- |++...
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 9999888655555442 345555442 220000
Q ss_pred ------CCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCcccHHHHHh-
Q 048757 586 ------SSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALAR----SAVVDVHETAAGALWNLAFNPGNALCIVE- 654 (864)
Q Consensus 586 ------~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~~L~~~~~~~~~i~~- 654 (864)
.+..+|...+.+|--|+. +.....++.++.+|+ ++.-.+++.++-||+.++..- -.-+..
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc--M~g~~p~ 431 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC--MQGFVPH 431 (885)
T ss_pred ccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH--hhhcccc
Confidence 012345544444443332 333345555555554 566778999999999887410 000000
Q ss_pred -CCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 655 -GGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 655 -~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
...+|.|+++|.+.. +.||....|+|+..+.
T Consensus 432 LpeLip~l~~~L~DKk-plVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 432 LPELIPFLLSLLDDKK-PLVRSITCWTLSRYSK 463 (885)
T ss_pred hHHHHHHHHHHhccCc-cceeeeeeeeHhhhhh
Confidence 124788899998875 8899999999986643
No 53
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.93 E-value=1.2e-07 Score=102.66 Aligned_cols=241 Identities=17% Similarity=0.046 Sum_probs=184.1
Q ss_pred cHHHHHHHHc-cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 310 GATLLLSLME-SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 310 gv~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
+++.++..|. +++.+++..++.++... ++ ..++..|+..|.+.++.++..++.+|+.
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~---~~---------------~~~~~~L~~~L~d~~~~vr~aaa~ALg~---- 112 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQ---ED---------------ALDLRSVLAVLQAGPEGLCAGIQAALGW---- 112 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhcc---CC---------------hHHHHHHHHHhcCCCHHHHHHHHHHHhc----
Confidence 4788999994 56788777666555431 11 2248899999999999999999999998
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
+...+..+.|+.+|++.++.++..++.++.... ....+.+..+|. +.+..|+..|+++|+
T Consensus 113 ------i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~---d~d~~Vra~A~raLG 172 (410)
T TIGR02270 113 ------LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----------HDPGPALEAALT---HEDALVRAAALRALG 172 (410)
T ss_pred ------CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 666777889999999999999999988887732 224678888886 588899999999998
Q ss_pred HhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHH
Q 048757 469 NLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQ 548 (864)
Q Consensus 469 ~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 548 (864)
.+ .....++.|...+.+ .++.++..|++++..+.. ..++..+..+..........
T Consensus 173 ~l----------~~~~a~~~L~~al~d-~~~~VR~aA~~al~~lG~--------------~~A~~~l~~~~~~~g~~~~~ 227 (410)
T TIGR02270 173 EL----------PRRLSESTLRLYLRD-SDPEVRFAALEAGLLAGS--------------RLAWGVCRRFQVLEGGPHRQ 227 (410)
T ss_pred hh----------ccccchHHHHHHHcC-CCHHHHHHHHHHHHHcCC--------------HhHHHHHHHHHhccCccHHH
Confidence 87 344567778888777 579999999999987764 24567777755555555554
Q ss_pred HHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCC
Q 048757 549 EAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAV 628 (864)
Q Consensus 549 ~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~ 628 (864)
.+..++... .. ...++.|..++++ +.++..++.+++ .+.....+++|+..+.++.
T Consensus 228 ~l~~~lal~-~~---------~~a~~~L~~ll~d-----~~vr~~a~~AlG----------~lg~p~av~~L~~~l~d~~ 282 (410)
T TIGR02270 228 RLLVLLAVA-GG---------PDAQAWLRELLQA-----AATRREALRAVG----------LVGDVEAAPWCLEAMREPP 282 (410)
T ss_pred HHHHHHHhC-Cc---------hhHHHHHHHHhcC-----hhhHHHHHHHHH----------HcCCcchHHHHHHHhcCcH
Confidence 445455444 11 2467888888874 449999999999 6888899999999997543
Q ss_pred HHHHHHHHHHHHHhcC
Q 048757 629 VDVHETAAGALWNLAF 644 (864)
Q Consensus 629 ~~v~~~a~~aL~~L~~ 644 (864)
++..|..++..++-
T Consensus 283 --~aR~A~eA~~~ItG 296 (410)
T TIGR02270 283 --WARLAGEAFSLITG 296 (410)
T ss_pred --HHHHHHHHHHHhhC
Confidence 99999999999984
No 54
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.93 E-value=1.7e-07 Score=101.53 Aligned_cols=244 Identities=15% Similarity=-0.017 Sum_probs=183.2
Q ss_pred hCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHH
Q 048757 357 HGGVRLLLDLAR-SPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGA 435 (864)
Q Consensus 357 ~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 435 (864)
..+++.++..|. +++.++...++.++.. .+ +..+++.|+..|.+.++.++..++.+|+.+-.
T Consensus 53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~--------~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 53 KAATELLVSALAEADEPGRVACAALALLA--QE--------DALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred HhHHHHHHHHHhhCCChhHHHHHHHHHhc--cC--------ChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 557888999994 5777887776666653 11 12248899999999999999999999998653
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
.+..+.|+.++. +.++.++..++.++... .....+.+..++++ .++.++..|+.+|..+...
T Consensus 116 ---~~a~~~L~~~L~---~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d-~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 ---RQAEPWLEPLLA---ASEPPGRAIGLAALGAH-----------RHDPGPALEAALTH-EDALVRAAALRALGELPRR 177 (410)
T ss_pred ---hHHHHHHHHHhc---CCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcC-CCHHHHHHHHHHHHhhccc
Confidence 337788999996 47778888887766552 23346788889987 4699999999999998862
Q ss_pred CCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHH
Q 048757 516 GDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAA 595 (864)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~ 595 (864)
..++.|...+.+.++.||..|+.++..+.. ..+++.+..+... ........+.
T Consensus 178 --------------~a~~~L~~al~d~~~~VR~aA~~al~~lG~----------~~A~~~l~~~~~~---~g~~~~~~l~ 230 (410)
T TIGR02270 178 --------------LSESTLRLYLRDSDPEVRFAALEAGLLAGS----------RLAWGVCRRFQVL---EGGPHRQRLL 230 (410)
T ss_pred --------------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHhc---cCccHHHHHH
Confidence 467888889999999999999999987732 1345666665554 4444555555
Q ss_pred HHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHH
Q 048757 596 GALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARF 675 (864)
Q Consensus 596 ~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~ 675 (864)
.++.. ......++.|..+++++. ++..++.+|+.+. ...+++.|++.+.++ + ++.
T Consensus 231 ~~lal----------~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg----------~p~av~~L~~~l~d~--~-~aR 285 (410)
T TIGR02270 231 VLLAV----------AGGPDAQAWLRELLQAAA--TRREALRAVGLVG----------DVEAAPWCLEAMREP--P-WAR 285 (410)
T ss_pred HHHHh----------CCchhHHHHHHHHhcChh--hHHHHHHHHHHcC----------CcchHHHHHHHhcCc--H-HHH
Confidence 55542 233467889999998744 9999999999998 567899999999765 2 888
Q ss_pred HHHHHHHHhhcC
Q 048757 676 MAALALAYIVDG 687 (864)
Q Consensus 676 ~aa~aL~~l~~~ 687 (864)
.|..++..+.--
T Consensus 286 ~A~eA~~~ItG~ 297 (410)
T TIGR02270 286 LAGEAFSLITGM 297 (410)
T ss_pred HHHHHHHHhhCC
Confidence 899999876543
No 55
>PTZ00429 beta-adaptin; Provisional
Probab=98.87 E-value=8.1e-06 Score=94.94 Aligned_cols=324 Identities=14% Similarity=0.049 Sum_probs=209.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
++.+.+.+.+.++-||..|+.++..+...+.+ .+.+.+.++.|..+|.+.++.|+..|+.+|..+.....
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe----------lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ----------LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc----------cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 46667777888999999999999998654432 24456788889999999999999999999999876321
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHh
Q 048757 391 VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANL 470 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L 470 (864)
..- -...+.+..|+..+.+-++..|-..+.+|... .+...... ...+..+...|. +.+..|...|+.++.++
T Consensus 212 ~~l-~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq---~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 212 EKI-ESSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMS---HQNPAVVMGAIKVVANL 283 (746)
T ss_pred hhh-HHHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhc---CCCHHHHHHHHHHHHHh
Confidence 111 12233455677777777888888888887553 22221111 234566666665 46789999999999998
Q ss_pred cCCCc--chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHH
Q 048757 471 AADDK--CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQ 548 (864)
Q Consensus 471 ~~~~~--~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 548 (864)
....+ ....+ -....++++.++. .+++++..++..+..+... .+ ..+. . -+..+.-...+ ...++.
T Consensus 284 ~~~~~~~~~~~~-~~rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~~---~P---~lf~-~-~~~~Ff~~~~D-p~yIK~ 351 (746)
T PTZ00429 284 ASRCSQELIERC-TVRVNTALLTLSR--RDAETQYIVCKNIHALLVI---FP---NLLR-T-NLDSFYVRYSD-PPFVKL 351 (746)
T ss_pred cCcCCHHHHHHH-HHHHHHHHHHhhC--CCccHHHHHHHHHHHHHHH---CH---HHHH-H-HHHhhhcccCC-cHHHHH
Confidence 75421 11111 1112355666643 3588999999998888763 11 1111 1 12222222233 345899
Q ss_pred HHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccC
Q 048757 549 EAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSA 627 (864)
Q Consensus 549 ~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~ 627 (864)
..+.+|..|+... +-..| +..|.+...+ .+.+.+..++.+++.++.. +... ...+..|++++..+
T Consensus 352 ~KLeIL~~Lane~-Nv~~I-----L~EL~eYa~d---~D~ef~r~aIrAIg~lA~k~~~~a-----~~cV~~Ll~ll~~~ 417 (746)
T PTZ00429 352 EKLRLLLKLVTPS-VAPEI-----LKELAEYASG---VDMVFVVEVVRAIASLAIKVDSVA-----PDCANLLLQIVDRR 417 (746)
T ss_pred HHHHHHHHHcCcc-cHHHH-----HHHHHHHhhc---CCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCC
Confidence 9999999997543 32222 3555566655 7899999999999999865 3322 33567788998765
Q ss_pred CHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHh--cCCCcHHHHHHHHHHHHHhhc
Q 048757 628 VVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLC--SSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 628 ~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll--~~~~~~~~r~~aa~aL~~l~~ 686 (864)
.+ +...++.++.++.. +|. + ..++.|+..+ ..-+.+..|...+|.++..++
T Consensus 418 ~~-~v~e~i~vik~IlrkyP~-~------~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 418 PE-LLPQVVTAAKDIVRKYPE-L------LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD 471 (746)
T ss_pred ch-hHHHHHHHHHHHHHHCcc-H------HHHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence 44 44467888888865 443 2 1355566543 233357788888999997654
No 56
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.85 E-value=4.7e-07 Score=96.34 Aligned_cols=230 Identities=17% Similarity=0.156 Sum_probs=164.5
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHH------hCCHHHHHHHhcCCCHHHHHHHHHHH
Q 048757 311 ATLLLSLMES--SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILR------HGGVRLLLDLARSPPEGLQSEVAKAI 382 (864)
Q Consensus 311 v~~L~~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~------~~~i~~L~~lL~~~~~~~~~~a~~~L 382 (864)
+..++.+|+. .++++..+....+..|...+... ...+.. .....++++++.++|..++..++..|
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~-------~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iL 129 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSR-------VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFIL 129 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSS-------HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHH-------HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 5667777753 58999999999999988777543 233332 23678899999999999999999999
Q ss_pred HHHhCCchhHHHHHhcCcHHHHHHHHcc----CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcc----cCC
Q 048757 383 ANLSVDSKVAKAVSENGGIDILADLARS----TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFK----WSS 454 (864)
Q Consensus 383 ~~L~~~~~~~~~i~~~g~i~~Lv~lL~~----~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~----~~~ 454 (864)
..+......+..-...+.++.+++.+++ ++..++..|+.+|.++...++.|..+.+.|+++.+.+++.. ...
T Consensus 130 t~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 130 TSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp HHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH--------
T ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCC
Confidence 9988754333333235667888887764 45567899999999999999999999999999999999921 134
Q ss_pred CCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHH
Q 048757 455 WNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEA 534 (864)
Q Consensus 455 ~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~ 534 (864)
.+..++..++-++|-|+.+++....+...+.++.|+++++....+.+-+-++.++.|+...+ .......++..++++.
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~--~~~~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKA--PKSNIELMVLCGLLKT 287 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSS--STTHHHHHHHH-HHHH
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhcc--HHHHHHHHHHccHHHH
Confidence 56688899999999999999988889888899999999999877889999999999999853 2236677777777776
Q ss_pred HHHHhcC--CCHHHHHH
Q 048757 535 LVQLTFS--KHEGVRQE 549 (864)
Q Consensus 535 L~~lL~~--~~~~v~~~ 549 (864)
+-.+... .|+++.+.
T Consensus 288 l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 288 LQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHSS--SSHHHHHH
T ss_pred HHHHhcCCCCCHHHHHH
Confidence 6666544 46776543
No 57
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.82 E-value=6.8e-09 Score=129.77 Aligned_cols=86 Identities=21% Similarity=0.233 Sum_probs=46.1
Q ss_pred cCCCccEEeccCCCCCCHHHhc-CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCc
Q 048757 132 QCRQLVEVGFIDSGGVDEAALE-NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLK 210 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~~~~~-~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 210 (864)
++++|++|+|++|..++..... ++++|+.|++++|..++. +....++|+.|+++++... .+...+..+++|+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-----~p~~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~ 872 (1153)
T PLN03210 800 NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-----FPDISTNISDLNLSRTGIE--EVPWWIEKFSNLS 872 (1153)
T ss_pred CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-----ccccccccCEeECCCCCCc--cChHHHhcCCCCC
Confidence 3455555555555443322111 445555555555554431 1112345666666664332 2333455678888
Q ss_pred EEEccCCCCccccc
Q 048757 211 VLIALNCPVFEAEA 224 (864)
Q Consensus 211 ~L~~~~c~~~~~~~ 224 (864)
.|++.+|+.+..-.
T Consensus 873 ~L~L~~C~~L~~l~ 886 (1153)
T PLN03210 873 FLDMNGCNNLQRVS 886 (1153)
T ss_pred EEECCCCCCcCccC
Confidence 88888888877643
No 58
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.81 E-value=2.9e-07 Score=97.91 Aligned_cols=225 Identities=16% Similarity=0.109 Sum_probs=162.5
Q ss_pred HHHHHHHHcc--CCHHHHHHHHHHHHHhcC-CCCcHHHHHh------hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhc
Q 048757 401 IDILADLARS--TNRLVAEEVVGGLWNLSV-GEDHKGAIAR------AGGIKALVDLIFKWSSWNDGVLERAAGALANLA 471 (864)
Q Consensus 401 i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~------~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~ 471 (864)
...++.+|+. .++++.++++..+..+.. ++.....+.. .....++++++. .++..+...++.+|..+.
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~---~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLD---RNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S----SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhc---CCCHHHHHHHHHHHHHHH
Confidence 5556666643 588899999999998865 4455555543 235778888775 468899999999999998
Q ss_pred CCCcchHHHHhcCcHHHHHHHHHcc---CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHh-----c--C
Q 048757 472 ADDKCSLEVARAGGVHALVMLARSF---MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT-----F--S 541 (864)
Q Consensus 472 ~~~~~~~~i~~~~~i~~Lv~ll~~~---~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL-----~--~ 541 (864)
.....+..-...+.++.++..+.+. ++.+++..++.+|.+|.. .+..|..+.+.++++.+.+++ . .
T Consensus 134 ~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~----~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~ 209 (312)
T PF03224_consen 134 SQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR----SKEYRQVFWKSNGVSPLFDILRKQATNSNS 209 (312)
T ss_dssp TSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT----SHHHHHHHHTHHHHHHHHHHHH--------
T ss_pred HcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC----cchhHHHHHhcCcHHHHHHHHHhhcccCCC
Confidence 8766443333356678888888752 234567889999999998 789999999999999999999 2 2
Q ss_pred CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch--hhHHhhhcCCHHH
Q 048757 542 KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA--NSIAIGREGGVAP 619 (864)
Q Consensus 542 ~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~--~~~~i~~~~~i~~ 619 (864)
.+..++..++-++|-|+++++....+...+.++.|+++++. ...+.+.+-++.++.|+...+. +...+...|+++.
T Consensus 210 ~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~ 287 (312)
T PF03224_consen 210 SGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--SIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKT 287 (312)
T ss_dssp -HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHH
T ss_pred CchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--cccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHH
Confidence 35678999999999999999999999999999999999998 5788999999999999998754 7777777776666
Q ss_pred HHHHHc--cCCHHHHHH
Q 048757 620 LIALAR--SAVVDVHET 634 (864)
Q Consensus 620 Lv~lL~--~~~~~v~~~ 634 (864)
+-.+.. -.|+++.+.
T Consensus 288 l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 288 LQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHHHSS--SSHHHHHH
T ss_pred HHHHhcCCCCCHHHHHH
Confidence 655553 256776654
No 59
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.81 E-value=2.1e-06 Score=92.95 Aligned_cols=248 Identities=25% Similarity=0.227 Sum_probs=160.5
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
..++.+++.+.+++..+|..|+..++.+ ....+++.+..++.+.++.++..++.+|+.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~------------------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~---- 100 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGEL------------------GSEEAVPLLRELLSDEDPRVRDAAADALGE---- 100 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhh------------------chHHHHHHHHHHhcCCCHHHHHHHHHHHHc----
Confidence 3578899999999999999999998774 235678999999999999999999999998
Q ss_pred chhHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCH----------
Q 048757 389 SKVAKAVSENGGIDILADLAR-STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWND---------- 457 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~---------- 457 (864)
+.....++.|+.++. +.+..++..+..+|+.+.... ++.+++..+.+ ...
T Consensus 101 ------~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~---~~~~~a~~~~~~~ 161 (335)
T COG1413 101 ------LGDPEAVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQD---EDSGSAAAALDAA 161 (335)
T ss_pred ------cCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhcc---chhhhhhhhccch
Confidence 566678999999998 589999999999999986432 57888888864 221
Q ss_pred --HHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHH
Q 048757 458 --GVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEAL 535 (864)
Q Consensus 458 --~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L 535 (864)
.++..+...+..+ .+...++.+..++.+. ...++..++.+|..+... + ..+.+.+
T Consensus 162 ~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~---~---------~~~~~~l 218 (335)
T COG1413 162 LLDVRAAAAEALGEL----------GDPEAIPLLIELLEDE-DADVRRAAASALGQLGSE---N---------VEAADLL 218 (335)
T ss_pred HHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcc---h---------hhHHHHH
Confidence 2333333333322 3334455666666653 346666666666666542 1 2344555
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcC
Q 048757 536 VQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREG 615 (864)
Q Consensus 536 ~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~ 615 (864)
...+.+++..+|..++.++..+-. ...++.+...+.+ .+..++..+...+. ......
T Consensus 219 ~~~~~~~~~~vr~~~~~~l~~~~~----------~~~~~~l~~~l~~---~~~~~~~~~~~~~~----------~~~~~~ 275 (335)
T COG1413 219 VKALSDESLEVRKAALLALGEIGD----------EEAVDALAKALED---EDVILALLAAAALG----------ALDLAE 275 (335)
T ss_pred HHHhcCCCHHHHHHHHHHhcccCc----------chhHHHHHHHHhc---cchHHHHHHHHHhc----------ccCchh
Confidence 566666666666666666665521 2244555555554 45555554444443 122223
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 616 GVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 616 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
....+...+.+....++..+..++....
T Consensus 276 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 276 AALPLLLLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred hHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence 3444555555555556666666555555
No 60
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.80 E-value=2.6e-07 Score=95.52 Aligned_cols=278 Identities=23% Similarity=0.237 Sum_probs=199.5
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHH--HHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 391 VAKAVSENGGIDILADLARSTNRL--VAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~--v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
.+..+...|+++.|++++..++-+ ++..|.+.|..+.. .+|++.++..| ...++.+-+. ...++.....+++|.
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~--~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKE--REPVELARSVAGILE 247 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhh--cCcHHHHHHHHHHHH
Confidence 344677889999999999887655 58889999988754 46777777765 5555555543 467889999999999
Q ss_pred HhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHH
Q 048757 469 NLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVR 547 (864)
Q Consensus 469 ~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 547 (864)
++-...+ ....++..|++..++-..+. .+|.+..+++-||.|++-++ ....+..+++..+-+.|+.+-.+.|+-.|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~--~~a~qrrmveKr~~EWLF~LA~skDel~R 324 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHG--GQAVQRRMVEKRAAEWLFPLAFSKDELLR 324 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhc--hhHHHHHHHHhhhhhhhhhhhcchHHHHH
Confidence 9998865 67788899999999999988 46999999999999999875 44667778888888899988878888899
Q ss_pred HHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccC
Q 048757 548 QEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSA 627 (864)
Q Consensus 548 ~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~ 627 (864)
..|+-+.+-|+.+.+....+...|.+...-.++.+ .+|. .++++...-..=.-..-++.|+.+|++.
T Consensus 325 ~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~---~DP~----------~FARD~hd~aQG~~~d~LqRLvPlLdS~ 391 (832)
T KOG3678|consen 325 LHACLAVAVLATNKEVEREVRKSGTLALVEPLVAS---LDPG----------RFARDAHDYAQGRGPDDLQRLVPLLDSN 391 (832)
T ss_pred HHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhc---cCcc----------hhhhhhhhhhccCChHHHHHhhhhhhcc
Confidence 99999999999988776666666654444444443 3332 1122110000001123567889999877
Q ss_pred CHHHHHHHHHHHHHhcC--Cccc-HHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 628 VVDVHETAAGALWNLAF--NPGN-ALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 628 ~~~v~~~a~~aL~~L~~--~~~~-~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
.-+.+..++.-|+-=+. ...+ -..+.+-|+|+.|-++..+++ +.....|..||.-+.+.-+
T Consensus 392 R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d-~vaakfAseALtviGEEVP 455 (832)
T KOG3678|consen 392 RLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPD-EVAAKFASEALTVIGEEVP 455 (832)
T ss_pred hhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHhccccC
Confidence 66666655555544332 2222 345667899999999998775 5555667888887777665
No 61
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.74 E-value=3.7e-06 Score=87.09 Aligned_cols=321 Identities=16% Similarity=0.080 Sum_probs=219.6
Q ss_pred CCHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCchhHHHHHh-------cCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 048757 358 GGVRLLLDLARS-PPEGLQSEVAKAIANLSVDSKVAKAVSE-------NGGIDILADLARSTNRLVAEEVVGGLWNLSVG 429 (864)
Q Consensus 358 ~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~-------~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~ 429 (864)
..+..++.+++. ..++...-++..+..+-.....+..+.. ...-++.+++|...+..+.+...+++..++..
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 456667777766 3455555566666665554433333332 22256788999999999988888899888653
Q ss_pred CCcHHHHHhhCc-HHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHH-HccCchhHHHHHHH
Q 048757 430 EDHKGAIARAGG-IKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLA-RSFMFEGVQEQAAR 507 (864)
Q Consensus 430 ~~~~~~i~~~g~-i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll-~~~~~~~v~~~a~~ 507 (864)
....-...+-.. ...|-..+.+ +.+......|++||-.+...++.|..+....|+..++..+ .+..+-.+|.+.+.
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~--~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQS--STNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 222111111111 1223334432 4555667789999999999999999999999999999999 44445778899999
Q ss_pred HHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC-CHHHHHHHHHHHHHhcCChhh---H----HHHHHCCChHHHHHH
Q 048757 508 ALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK-HEGVRQEAAGALWNLSFDDRN---R----EAIAAAGGVEALVAL 579 (864)
Q Consensus 508 aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~Ls~~~~~---~----~~i~~~~~i~~Lv~l 579 (864)
+++-|+. ++.....+...+.++.|...+++. .++|-+-.+.++.|+....+. + ..++. +.++.-++.
T Consensus 223 ciWlLtF----n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~ 297 (442)
T KOG2759|consen 223 CIWLLTF----NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQS 297 (442)
T ss_pred HHHHhhc----CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHH
Confidence 9999998 556667777789999999998864 667888899999999776532 2 22333 345666666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHh-------cc---------------Cc---------hhhHHhhh--cCCHHHHHHHHcc
Q 048757 580 VRSCSSSSQGLQERAAGALWGL-------SL---------------SE---------ANSIAIGR--EGGVAPLIALARS 626 (864)
Q Consensus 580 L~~~~~~~~~v~~~A~~aL~~L-------~~---------------~~---------~~~~~i~~--~~~i~~Lv~lL~~ 626 (864)
|....-.|+++....-..--.| +. +| +|...+-+ ...++.|+++|+.
T Consensus 298 L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~ 377 (442)
T KOG2759|consen 298 LEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET 377 (442)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc
Confidence 6654445666554333222211 11 11 12222222 2346789999986
Q ss_pred CC-HHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 627 AV-VDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 627 ~~-~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
.+ |.+...|+.=++.+.. +|+.+..+.+.||=+.+.+++.+++ |.||..|..|+-.+..
T Consensus 378 s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d-~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 378 SNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHED-PEVRYHALLAVQKLMV 438 (442)
T ss_pred CCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCC-chHHHHHHHHHHHHHh
Confidence 54 7788889999999987 8889999999999999999999997 8899999998876544
No 62
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.74 E-value=2.3e-07 Score=95.99 Aligned_cols=255 Identities=21% Similarity=0.220 Sum_probs=186.5
Q ss_pred hhhhccChHHHHHHHhcCCCHH--HHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 048757 524 AVGLETGALEALVQLTFSKHEG--VRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGL 601 (864)
Q Consensus 524 ~~~~~~~~i~~L~~lL~~~~~~--v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L 601 (864)
..+...|++..|++++..++.+ +|.+|++.|..+. ..++++.+++.| ...++.+.+. ...++.+...+++|.++
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~-~aeN~d~va~~~-~~~Il~lAK~--~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL-VAENRDRVARIG-LGVILNLAKE--REPVELARSVAGILEHM 249 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH-hhhhhhHHhhcc-chhhhhhhhh--cCcHHHHHHHHHHHHHH
Confidence 3455678999999999988655 6999999998863 456777887765 6666666654 57889999999999999
Q ss_pred ccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC--cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHH
Q 048757 602 SLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFN--PGNALCIVEGGGVQALIHLCSSSLSKMARFMAA 678 (864)
Q Consensus 602 ~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa 678 (864)
-.+ ++.+..++..|++..++--.+..+|.+.+.++-+|+|++.+ ...+..|++..+-+-|.-+-.+.+ +..|..|.
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skD-el~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKD-ELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchH-HHHHHHHH
Confidence 987 78889999999999999999999999999999999999985 457789999999889988887774 88999999
Q ss_pred HHHHHhhcCCccceeeecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChhhHHHHhhccchhHHh
Q 048757 679 LALAYIVDGRMEDIASIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQAFATALASAVPKSLA 758 (864)
Q Consensus 679 ~aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~~~~~a~~~~a~~~l~ 758 (864)
.|.+-++.+.+-+ ..|+.+. .+..++|++.+... .+ |+
T Consensus 329 lAV~vlat~KE~E------------~~VrkS~-----------------TlaLVEPlva~~DP-~~------------FA 366 (832)
T KOG3678|consen 329 LAVAVLATNKEVE------------REVRKSG-----------------TLALVEPLVASLDP-GR------------FA 366 (832)
T ss_pred HHHhhhhhhhhhh------------HHHhhcc-----------------chhhhhhhhhccCc-ch------------hh
Confidence 9998887765511 1111111 22347888765433 22 22
Q ss_pred ccccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHH-HhhccCCCcchhhhhhhhhhcChhhHHHHhhhh
Q 048757 759 QITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVAL-LQFTMPGGQHSMHHTNLLQNVGAPRVLQSTAAA 834 (864)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 834 (864)
.- ..--.+| ...+-+.+|+.+|++.--+.|..+||-+ +.-++..... ...-+++.|+..+|+.++.+
T Consensus 367 RD---~hd~aQG---~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~---K~kVFseIGAIQaLKevaSS 434 (832)
T KOG3678|consen 367 RD---AHDYAQG---RGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQG---KTKVFSEIGAIQALKEVASS 434 (832)
T ss_pred hh---hhhhhcc---CChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHHHhcC
Confidence 21 1111222 1234568999999998899999999887 2222222211 22448899999999998874
No 63
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=7.8e-07 Score=90.96 Aligned_cols=186 Identities=17% Similarity=0.130 Sum_probs=156.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHH
Q 048757 369 SPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVD 447 (864)
Q Consensus 369 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~ 447 (864)
+.+.+-+..|..-|..++.+-++...+...||..+++..+++.+..+|+.|+++++.++. +|..+..+.+.|+.+.|+.
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 456778888999999999999999999999999999999999999999999999999976 6789999999999999999
Q ss_pred HHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHcc-CchhHHHHHHHHHHHHhhcCCCCcccchh
Q 048757 448 LIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSF-MFEGVQEQAARALANLVAHGDSNSNNAAV 525 (864)
Q Consensus 448 lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 525 (864)
.+.. +++..++..|..+++.+.++.. ....+...+|...|...+.+. .+..++..++.-+..+... .......
T Consensus 174 ~ls~--~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~---~~s~~d~ 248 (342)
T KOG2160|consen 174 ILSS--DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE---DKSDEDI 248 (342)
T ss_pred HHcc--CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh---hhhhhhH
Confidence 9984 7778899999999999999876 788888999999999999984 3467778899999999875 3333345
Q ss_pred hhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 048757 526 GLETGALEALVQLTFSKHEGVRQEAAGALWNLSF 559 (864)
Q Consensus 526 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~ 559 (864)
+...+....+..+....+.++++.+..++..+..
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5555666666677777788888888887766543
No 64
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.71 E-value=2.6e-06 Score=92.34 Aligned_cols=254 Identities=26% Similarity=0.250 Sum_probs=196.1
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIA 437 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 437 (864)
..++.+++.+.+++..++..++..++. +.....++.+..++.+.++.++..|+.+|+.+-...
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~----------~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~------- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGE----------LGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPE------- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhh----------hchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChh-------
Confidence 478889999999999999999999887 556678999999999999999999999999876433
Q ss_pred hhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccC---------ch--hHHHHHH
Q 048757 438 RAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFM---------FE--GVQEQAA 506 (864)
Q Consensus 438 ~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~---------~~--~v~~~a~ 506 (864)
.++.++.++.. +.+..++..++.+|+.+ .+...+..++..+.+.. .+ .++..++
T Consensus 106 ---a~~~li~~l~~--d~~~~vR~~aa~aL~~~----------~~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~ 170 (335)
T COG1413 106 ---AVPPLVELLEN--DENEGVRAAAARALGKL----------GDERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA 170 (335)
T ss_pred ---HHHHHHHHHHc--CCcHhHHHHHHHHHHhc----------CchhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence 78999999975 57889999999999877 34455777888877632 11 3566677
Q ss_pred HHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCC
Q 048757 507 RALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSS 586 (864)
Q Consensus 507 ~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 586 (864)
.+|..+.. ...++.+...+.+.+..+|..|+.+|..+.... ....+.+...+.+ +
T Consensus 171 ~~l~~~~~--------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~---~ 225 (335)
T COG1413 171 EALGELGD--------------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSD---E 225 (335)
T ss_pred HHHHHcCC--------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcC---C
Confidence 77766654 356788999999999999999999999985543 2355777777776 8
Q ss_pred CHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhc
Q 048757 587 SQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCS 666 (864)
Q Consensus 587 ~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~ 666 (864)
+..++..++.+|+ .+.....++.++..+.+.+..++..+..++...- .......+...+.
T Consensus 226 ~~~vr~~~~~~l~----------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~ 285 (335)
T COG1413 226 SLEVRKAALLALG----------EIGDEEAVDALAKALEDEDVILALLAAAALGALD----------LAEAALPLLLLLI 285 (335)
T ss_pred CHHHHHHHHHHhc----------ccCcchhHHHHHHHHhccchHHHHHHHHHhcccC----------chhhHHHHHHHhh
Confidence 9999999999998 4666778899999999988888877777766221 1133445556665
Q ss_pred CCCcHHHHHHHHHHHHHhhcCCc
Q 048757 667 SSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 667 ~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+.. ..++..++.++........
T Consensus 286 ~~~-~~~~~~~~~~l~~~~~~~~ 307 (335)
T COG1413 286 DEA-NAVRLEAALALGQIGQEKA 307 (335)
T ss_pred cch-hhHHHHHHHHHHhhcccch
Confidence 554 6788888888887766554
No 65
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.9e-09 Score=109.98 Aligned_cols=186 Identities=13% Similarity=0.042 Sum_probs=120.9
Q ss_pred cCCCCcEEEecCCCCchHH---HHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCC--CCHHHHHHHH
Q 048757 30 RCTNLQALWFRGALSADAM---IILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDR--ISSDAIKTVA 104 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~l---~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~--i~~~~l~~l~ 104 (864)
.+.+|++..|.+|..-... ....|++++.|||+..-.-+...+..+++.+|+|+.|+| +...- .++.-. .
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNl--s~Nrl~~~~~s~~---~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNL--SSNRLSNFISSNT---T 193 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccc--ccccccCCccccc---h
Confidence 4555777788887643321 234888888888888776677788888888888888888 43211 111111 1
Q ss_pred hcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc--CCCCcCEEEEeCCCCCCHHHHHHHHhcCC
Q 048757 105 YCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE--NLSSVRYLSIAGTRNLNWSSAAIAWSKLT 182 (864)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~--~~~~L~~L~l~~c~~~~~~~l~~l~~~~~ 182 (864)
...+.|+.|.+++|. ++...+..+...||.|+.|.+.++..+.-.... .+..|+.|||++...++..-.... ..+|
T Consensus 194 ~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~-~~l~ 271 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV-GTLP 271 (505)
T ss_pred hhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc-cccc
Confidence 146778888888887 888888888888888888888886544333333 667788888888766654433333 3578
Q ss_pred CCcEEecCCCCCCHHHHHH-----HhcCCCCCcEEEccCCCCccc
Q 048757 183 SLVGLDTSRTNINLSSVTR-----LLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 183 ~L~~L~l~~~~~~~~~l~~-----~~~~~~~L~~L~~~~c~~~~~ 222 (864)
.|..|+++.|.+..-+... .....|+|+.|++...+..+-
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 8888888774433221111 122347788888876665443
No 66
>PTZ00429 beta-adaptin; Provisional
Probab=98.70 E-value=5.8e-05 Score=87.95 Aligned_cols=407 Identities=13% Similarity=0.038 Sum_probs=219.1
Q ss_pred HHHHHhhCCchhHHHHH-hhc-HHHHHHHHccCCHHHHHHHHH-HHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh
Q 048757 291 LMRISKKNPKEFDDFWL-RQG-ATLLLSLMESSQQEVQERAAY-AVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA 367 (864)
Q Consensus 291 l~~~~~~~~~~~~~~~~-~~g-v~~L~~lL~~~~~~v~~~a~~-~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL 367 (864)
+.+.+.....+...|.. +.| +..|-+.|++.+...+..+.. ++..+..+.+- ...++.++.++
T Consensus 12 ~~~~~~~~~~~~~~f~~~~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv--------------S~LF~dVvk~~ 77 (746)
T PTZ00429 12 IQRKLEETKTGSKYFAQTRRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV--------------SYLFVDVVKLA 77 (746)
T ss_pred HHHHhhcCCCccccccccccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc--------------hHHHHHHHHHh
Confidence 44444444444333321 345 778888888877766666665 66666666531 23567777888
Q ss_pred cCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHH
Q 048757 368 RSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALV 446 (864)
Q Consensus 368 ~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~ 446 (864)
.+.+.+++..+--.+.+.+. +++... -++..+.+=+.++++.+|-.|+++|.++.... +.+. .++++.
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~-----i~e~-l~~~lk 146 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS-----VLEY-TLEPLR 146 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH-----HHHH-HHHHHH
Confidence 88999999888888888776 343221 13555666677778888888888877764321 1110 122222
Q ss_pred HHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhh
Q 048757 447 DLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVG 526 (864)
Q Consensus 447 ~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~ 526 (864)
+. +.+ .++.||..|+-|+.++-.. ++ ..+
T Consensus 147 k~--------------------------------------------L~D-~~pYVRKtAalai~Kly~~---~p---elv 175 (746)
T PTZ00429 147 RA--------------------------------------------VAD-PDPYVRKTAAMGLGKLFHD---DM---QLF 175 (746)
T ss_pred HH--------------------------------------------hcC-CCHHHHHHHHHHHHHHHhh---Cc---ccc
Confidence 22 233 2455555555555555442 11 122
Q ss_pred hccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch
Q 048757 527 LETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA 606 (864)
Q Consensus 527 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~ 606 (864)
.+.+.++.|..+|.++++.|..+|+.+|..+.......- -...+.+..|+..+.+ -++-.|...+.+|....-.
T Consensus 176 ~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e---~~EW~Qi~IL~lL~~y~P~-- 249 (746)
T PTZ00429 176 YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPE---CNEWGQLYILELLAAQRPS-- 249 (746)
T ss_pred cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhc---CChHHHHHHHHHHHhcCCC--
Confidence 334556666666666666677777766666654322211 1122334555555554 4566666666666443211
Q ss_pred hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCc--ccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 048757 607 NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNP--GNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYI 684 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l 684 (864)
.... ....+..+...|++.++.|...|+.++.++.... .....+. ....++|+.|+. + ++.+|..+...+..+
T Consensus 250 ~~~e--~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L~s-s-~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 250 DKES--AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTLSR-R-DAETQYIVCKNIHAL 324 (746)
T ss_pred CcHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHhhC-C-CccHHHHHHHHHHHH
Confidence 1111 1235666778888999999999999999998643 2111111 122356777753 3 367888888787777
Q ss_pred hcCCcccee----eecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHH---hccChhhHHHHhhccchhHH
Q 048757 685 VDGRMEDIA----SIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVR---SFSDPQAFATALASAVPKSL 757 (864)
Q Consensus 685 ~~~~~~~~~----~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~---~~~~~~~~~~a~~~~a~~~l 757 (864)
....+..+. .+-+...|+.. ++. ..++-|.......-....+..|.. ....+.++.+.. ++
T Consensus 325 ~~~~P~lf~~~~~~Ff~~~~Dp~y-IK~-----~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIr------AI 392 (746)
T PTZ00429 325 LVIFPNLLRTNLDSFYVRYSDPPF-VKL-----EKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVR------AI 392 (746)
T ss_pred HHHCHHHHHHHHHhhhcccCCcHH-HHH-----HHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHH------HH
Confidence 776664332 12223344332 322 233444443322111222333322 222223334333 55
Q ss_pred hccccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q 048757 758 AQITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQF 804 (864)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~ 804 (864)
|+.+.... .. ....+..|+++++++...+ ..++..+..+
T Consensus 393 g~lA~k~~--~~-----a~~cV~~Ll~ll~~~~~~v-~e~i~vik~I 431 (746)
T PTZ00429 393 ASLAIKVD--SV-----APDCANLLLQIVDRRPELL-PQVVTAAKDI 431 (746)
T ss_pred HHHHHhCh--HH-----HHHHHHHHHHHhcCCchhH-HHHHHHHHHH
Confidence 55442210 11 1236788888888765543 3455555444
No 67
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.6e-05 Score=88.11 Aligned_cols=337 Identities=15% Similarity=0.077 Sum_probs=226.6
Q ss_pred hcHHHHHHHHccCC-HHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 048757 309 QGATLLLSLMESSQ-QEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIANL 385 (864)
Q Consensus 309 ~gv~~L~~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~L 385 (864)
+-|+.|+.-+.+.. .+-|+.|+..|..++. .++. -+...|++++++.|+. .|++....++.++.++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~sr----------kYR~-~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il 90 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSR----------KYRE-EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLIL 90 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHH----------HHHH-HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 34889999887654 7789999999999862 2333 4457788999999975 6899999999999998
Q ss_pred hCCch-----------------hHHHHH-hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCCcHHHHH-hhCcHHH
Q 048757 386 SVDSK-----------------VAKAVS-ENGGIDILADLARSTNRLVAEEVVGGLWNLSV--GEDHKGAIA-RAGGIKA 444 (864)
Q Consensus 386 ~~~~~-----------------~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~i~-~~g~i~~ 444 (864)
..+++ ....+. ..+-|..|+..+...|-.||..+...|.++-. ..+.+..+. ..-+|..
T Consensus 91 ~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~ 170 (970)
T KOG0946|consen 91 TSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISK 170 (970)
T ss_pred HhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHH
Confidence 77432 122333 34558889999999999999999999999844 456666664 6678999
Q ss_pred HHHHHcccCCCCHHHHHHHHHHHHHhcCCCcc-hHHHHhcCcHHHHHHHHHccC---chhHHHHHHHHHHHHhhcCCCCc
Q 048757 445 LVDLIFKWSSWNDGVLERAAGALANLAADDKC-SLEVARAGGVHALVMLARSFM---FEGVQEQAARALANLVAHGDSNS 520 (864)
Q Consensus 445 L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~-~~~i~~~~~i~~Lv~ll~~~~---~~~v~~~a~~aL~~L~~~~~~~~ 520 (864)
++.+|.+ ..+.+|..+.-.|..+..++.. ++.++=.+++..|+.++.... ..-|-+.++..|.||-.+ +.
T Consensus 171 lmdlL~D---srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~---N~ 244 (970)
T KOG0946|consen 171 LMDLLRD---SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN---NI 244 (970)
T ss_pred HHHHHhh---hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh---Cc
Confidence 9999974 6678889999999999999874 445555678899999998643 124667899999999886 77
Q ss_pred ccchhhhccChHHHHHHHhcC---CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHH
Q 048757 521 NNAAVGLETGALEALVQLTFS---KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGA 597 (864)
Q Consensus 521 ~~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~a 597 (864)
.++..+.+.+.+|.|.++|.. .+.++-.++..=+.|+ ...-.+++.+-+ ++++.-..+++
T Consensus 245 SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv-------------~~~Lqivr~lVs--P~Nt~~~~~q~-- 307 (970)
T KOG0946|consen 245 SNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNV-------------IEALQIVRSLVS--PGNTSSITHQN-- 307 (970)
T ss_pred chhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHH-------------HHHHHHHHHhcC--CCCcHHHHHHH--
Confidence 889999999999999988754 3333333332222222 111112222222 12222222222
Q ss_pred HHHhccCchhhHHhhhcCCHHHHHHHHccC--CHHHHHHHHHHHHHhcC-CcccHHHHHhCCc----------HHHHHHH
Q 048757 598 LWGLSLSEANSIAIGREGGVAPLIALARSA--VVDVHETAAGALWNLAF-NPGNALCIVEGGG----------VQALIHL 664 (864)
Q Consensus 598 L~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~----------v~~L~~l 664 (864)
...+...+++..|..++-++ +.+++..+.-++.++.. +..++..+.+-.+ +-.|..+
T Consensus 308 ----------qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm 377 (970)
T KOG0946|consen 308 ----------QKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSM 377 (970)
T ss_pred ----------HHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHH
Confidence 22345566677777776554 35566666666666655 4445555543221 2234455
Q ss_pred hcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 665 CSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 665 l~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
..+..++..|......+..+...+.
T Consensus 378 ~ne~q~~~lRcAv~ycf~s~l~dN~ 402 (970)
T KOG0946|consen 378 FNEKQPFSLRCAVLYCFRSYLYDND 402 (970)
T ss_pred HhccCCchHHHHHHHHHHHHHhcch
Confidence 5666677888888877776665555
No 68
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.4e-09 Score=110.60 Aligned_cols=234 Identities=18% Similarity=0.166 Sum_probs=151.7
Q ss_pred CCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH----HHHhCCcccceeeeecCCCC--CHHHHHHHHhCCCC
Q 048757 8 LWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA----MIILQARRLREINVEFCREL--TDAIFSAIVARHEM 81 (864)
Q Consensus 8 lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~----l~~~~~~~L~~L~l~~c~~l--~d~~l~~l~~~~~~ 81 (864)
-++.+-|++++...-..+..++.||+++.|+|+.+-..+. -+..++|+|+.|+++...-. +++... ...+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---~~l~~ 198 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---LLLSH 198 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch---hhhhh
Confidence 3456667777665555557788899999999999854332 22248999999999876521 111111 24688
Q ss_pred cceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc---CCCCc
Q 048757 82 LEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE---NLSSV 158 (864)
Q Consensus 82 L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~---~~~~L 158 (864)
|+.|.| +.|. ++...+..+...||+|+.|.+.++..+.-..... .....|++|||++...++...+. .+|.|
T Consensus 199 lK~L~l--~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 199 LKQLVL--NSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hheEEe--ccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccch
Confidence 999999 8784 7888999999999999999999985333222111 22456999999998877766443 88999
Q ss_pred CEEEEeCCCCCCHH-----HHHHHHhcCCCCcEEecCCCCCC-HHHHHHHhcCCCCCcEEEccCCCCccccchhhhhhcc
Q 048757 159 RYLSIAGTRNLNWS-----SAAIAWSKLTSLVGLDTSRTNIN-LSSVTRLLSSSRNLKVLIALNCPVFEAEADTSMMYNQ 232 (864)
Q Consensus 159 ~~L~l~~c~~~~~~-----~l~~l~~~~~~L~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~~~~c~~~~~~~~~~~~~~~ 232 (864)
+.|+++.|. +++- ........+|+|+.|++....+. +..+.. +..+++|+.|.+. |..++.+. .
T Consensus 274 ~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-l~~l~nlk~l~~~-~n~ln~e~------~- 343 (505)
T KOG3207|consen 274 NQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH-LRTLENLKHLRIT-LNYLNKET------D- 343 (505)
T ss_pred hhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccch-hhccchhhhhhcc-cccccccc------c-
Confidence 999998875 3322 22223467899999999985542 233322 2234777777763 55555554 2
Q ss_pred cCceEeeeehhhhhhhccccccccccc
Q 048757 233 KGKVVLSLISEIFKGVASLFSDTTEIN 259 (864)
Q Consensus 233 ~~~ll~~~~~~~~~~l~~L~~~~~~~~ 259 (864)
-.++++-+..+....+--......++.
T Consensus 344 ~a~~~VIAr~~~l~~LN~~di~p~eRR 370 (505)
T KOG3207|consen 344 TAKLLVIARISQLVKLNDVDISPNERR 370 (505)
T ss_pred ceeEEeeeehhhhhhhcccccChHHhh
Confidence 245554444555555554455554433
No 69
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.70 E-value=2.1e-08 Score=125.21 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=19.5
Q ss_pred hcCCCCcEEEecCCCCchH---HHHhCCcccceeeeecCC
Q 048757 29 SRCTNLQALWFRGALSADA---MIILQARRLREINVEFCR 65 (864)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~---l~~~~~~~L~~L~l~~c~ 65 (864)
..+++|+.|+++++..... -....+++|++|+++++.
T Consensus 90 ~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~ 129 (968)
T PLN00113 90 FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129 (968)
T ss_pred hCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc
Confidence 4566666666666643211 111255666666666554
No 70
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.4e-06 Score=87.45 Aligned_cols=179 Identities=20% Similarity=0.109 Sum_probs=143.8
Q ss_pred chhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHH
Q 048757 498 FEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEAL 576 (864)
Q Consensus 498 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~L 576 (864)
+.+-++.|..-|..++. +-++...+...|+...++..+++.+..+|+.|+++|+..+.+ +..+..+.+.|+.+.|
T Consensus 96 ~le~ke~ald~Le~lve----~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE----DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred CHHHHHHHHHHHHHHHH----hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 35556777777888877 566778888999999999999999999999999999998887 7789999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcC-CcccHHHH
Q 048757 577 VALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARS--AVVDVHETAAGALWNLAF-NPGNALCI 652 (864)
Q Consensus 577 v~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~L~~-~~~~~~~i 652 (864)
+.++.+ +.+..++..|..|++++-++ +.....|...+|+..|...+++ .+...+..|+..+..+.. +......+
T Consensus 172 l~~ls~--~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~ 249 (342)
T KOG2160|consen 172 LKILSS--DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIA 249 (342)
T ss_pred HHHHcc--CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999996 67888999999999999988 7788889999999999999998 557778889999999987 44444444
Q ss_pred HhCCcHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048757 653 VEGGGVQALIHLCSSSLSKMARFMAALALAY 683 (864)
Q Consensus 653 ~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~ 683 (864)
...+....+..+....+ ..++..+..++..
T Consensus 250 ~~~~f~~~~~~l~~~l~-~~~~e~~l~~~l~ 279 (342)
T KOG2160|consen 250 SSLGFQRVLENLISSLD-FEVNEAALTALLS 279 (342)
T ss_pred HHhhhhHHHHHHhhccc-hhhhHHHHHHHHH
Confidence 44444444555554443 5677766665543
No 71
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.59 E-value=1.2e-07 Score=118.40 Aligned_cols=109 Identities=16% Similarity=0.041 Sum_probs=46.1
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCC--CHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGV--DEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTS 183 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i--~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~ 183 (864)
.+++|++|++++|. ++..... ...++++|++|++++|... ....+.++++|++|++++|. ++.. +.....++++
T Consensus 234 ~l~~L~~L~L~~n~-l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~~~~l~~ 309 (968)
T PLN00113 234 GLTSLNHLDLVYNN-LTGPIPS-SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS-LSGE-IPELVIQLQN 309 (968)
T ss_pred cCCCCCEEECcCce-eccccCh-hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCe-eccC-CChhHcCCCC
Confidence 34555555555543 3221111 1223455555555554311 11223345555555555543 2111 1112234556
Q ss_pred CcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 184 LVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 184 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
|+.|+++++..... +...+..+++|+.|++.+|..
T Consensus 310 L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 310 LEILHLFSNNFTGK-IPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred CcEEECCCCccCCc-CChhHhcCCCCCEEECcCCCC
Confidence 66666655222111 112233445666666666554
No 72
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.58 E-value=2.8e-07 Score=93.12 Aligned_cols=186 Identities=23% Similarity=0.287 Sum_probs=131.2
Q ss_pred CccCCCCCCeecCCCCCCCHH---HHHHHHhcCCCCcEEEecCCCCchH--------HHH-------hCCcccceeeeec
Q 048757 2 LGSSPCLWSSLDLRPYKFDTS---AAESLSSRCTNLQALWFRGALSADA--------MII-------LQARRLREINVEF 63 (864)
Q Consensus 2 l~~~p~lw~~ldL~~~~~~~~---~l~~i~~~~~~L~~L~l~~~~~~~~--------l~~-------~~~~~L~~L~l~~ 63 (864)
|.-+| -++.+||+.+.+++. .+..+.++|..|++|.|.+|..-.. ++. ..-+.|+.+...+
T Consensus 88 L~~~~-~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 88 LLGCP-KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HhcCC-ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 34456 678899999888754 5666677899999999999853211 111 1567888888877
Q ss_pred CCCCCHHH---HHHHHhCCCCcceEEeccCCCCCCCHHHHHHH---HhcCcCcCeeeecccCCCcHHHHHHHHh---cCC
Q 048757 64 CRELTDAI---FSAIVARHEMLEILHFGLDVCDRISSDAIKTV---AYCCPKLRRLWLSGVREVNGDAINALAK---QCR 134 (864)
Q Consensus 64 c~~l~d~~---l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l---~~~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~ 134 (864)
.+ +.+.+ +....+.+|.|+.+.+ . .+.|..+|+..+ ..+||+|+.|+|..+. +|.++-.+++. .+|
T Consensus 167 Nr-len~ga~~~A~~~~~~~~leevr~--~-qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 167 NR-LENGGATALAEAFQSHPTLEEVRL--S-QNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWP 241 (382)
T ss_pred cc-cccccHHHHHHHHHhccccceEEE--e-cccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccc
Confidence 66 44443 3444577899999999 4 345666666443 4589999999999987 77776666554 468
Q ss_pred CccEEeccCCCCCCHHHhc-------CCCCcCEEEEeCCCCCCHHHHHHH---HhcCCCCcEEecCCCCC
Q 048757 135 QLVEVGFIDSGGVDEAALE-------NLSSVRYLSIAGTRNLNWSSAAIA---WSKLTSLVGLDTSRTNI 194 (864)
Q Consensus 135 ~L~~L~l~~c~~i~~~~~~-------~~~~L~~L~l~~c~~~~~~~l~~l---~~~~~~L~~L~l~~~~~ 194 (864)
+|++|++++|..-+..... ..|+|+.|.+.+|. +|-.+...+ ...-|.|..|+++++..
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 9999999999744332222 77999999999985 555433332 23479999999999554
No 73
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=2.9e-05 Score=77.18 Aligned_cols=271 Identities=19% Similarity=0.163 Sum_probs=183.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHH-hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhh
Q 048757 361 RLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVS-ENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARA 439 (864)
Q Consensus 361 ~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~ 439 (864)
..++.+|.+.+|.++..|+..+..++.. ..+.-.. +...++.+.++++...+ .+.|+.+|.|++..+..+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 4578899999999999999999998876 2222221 23347788999887777 788999999999999999999877
Q ss_pred CcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHH---h---cCcHHHHHHHHHccC-chh-HHHHHHHHHHH
Q 048757 440 GGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVA---R---AGGVHALVMLARSFM-FEG-VQEQAARALAN 511 (864)
Q Consensus 440 g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~---~---~~~i~~Lv~ll~~~~-~~~-v~~~a~~aL~~ 511 (864)
.++.++..+.+ +....-...+..|.|+++++.....+. . ..++..++..+-+.+ +.. --...+-.+.|
T Consensus 83 -~~k~l~~~~~~---p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 83 -LLKVLMDMLTD---PQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred -HHHHHHHHhcC---cccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 77778888764 334556678889999999876433222 1 133444444433322 111 12346778889
Q ss_pred HhhcCCCCcccchhhhccChHHH--HHHHhcCCCHHHHH-HHHHHHHHhcCChhhHHHHHHCCChHHHH-----------
Q 048757 512 LVAHGDSNSNNAAVGLETGALEA--LVQLTFSKHEGVRQ-EAAGALWNLSFDDRNREAIAAAGGVEALV----------- 577 (864)
Q Consensus 512 L~~~~~~~~~~~~~~~~~~~i~~--L~~lL~~~~~~v~~-~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv----------- 577 (864)
|++ .+..|..+.+...++. +.. +.+.+..+|. ..+++|.|.+++......+... .+..|-
T Consensus 159 ls~----~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e-~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 159 LSQ----FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDE-SINLLPAILLPLAGPEE 232 (353)
T ss_pred Hhh----hhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhccchhHHHHhcc-hHHHHHHHHhhcCCccc
Confidence 988 5667777776664332 222 3345555655 4789999999987766655552 222222
Q ss_pred -------------HHHHh--cCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 048757 578 -------------ALVRS--CSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS-AVVDVHETAAGALWN 641 (864)
Q Consensus 578 -------------~lL~~--~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~ 641 (864)
++|.. ...+++.++..-+.+|.-|+.....|+.+.+.|+.+.+-.+=+. +++++++..-.....
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 33321 11367899999999999999999999999999888777666543 557777655555444
Q ss_pred hcC
Q 048757 642 LAF 644 (864)
Q Consensus 642 L~~ 644 (864)
+..
T Consensus 313 Lv~ 315 (353)
T KOG2973|consen 313 LVR 315 (353)
T ss_pred HHh
Confidence 443
No 74
>PF05536 Neurochondrin: Neurochondrin
Probab=98.52 E-value=8.7e-05 Score=84.17 Aligned_cols=156 Identities=21% Similarity=0.282 Sum_probs=125.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-------CCHHHHHHHHHHHH
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-------PPEGLQSEVAKAIA 383 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-------~~~~~~~~a~~~L~ 383 (864)
++.-+++|++.+++-|..+...+.++...++.. ...++.+.+.=+.+.+-++|++ +....+..|+..|.
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~----~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDED----SQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhh----HHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 567889999988777778888888888765532 2344568888888999999987 34667888999999
Q ss_pred HHhCCchhHHHHHhcCcHHHHHHHHccCCH-HHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHH
Q 048757 384 NLSVDSKVAKAVSENGGIDILADLARSTNR-LVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLER 462 (864)
Q Consensus 384 ~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~ 462 (864)
.++.+|+....-.-.+-||.|++.+.+.+. .+...|..+|..++..++.+..+.+.|+++.|.+.+.+ .....+.
T Consensus 83 ~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~----~~~~~E~ 158 (543)
T PF05536_consen 83 AFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN----QSFQMEI 158 (543)
T ss_pred HHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh----CcchHHH
Confidence 999988765444445679999999977766 89999999999999999999999999999999999974 4566778
Q ss_pred HHHHHHHhcCCC
Q 048757 463 AAGALANLAADD 474 (864)
Q Consensus 463 a~~~L~~L~~~~ 474 (864)
|..++.++....
T Consensus 159 Al~lL~~Lls~~ 170 (543)
T PF05536_consen 159 ALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHHhc
Confidence 888888876643
No 75
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.8e-06 Score=93.55 Aligned_cols=360 Identities=14% Similarity=0.018 Sum_probs=206.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHH--hCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILR--HGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~--~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
.|.|-+.|.+++-.+|+.+.-+||.++.+.-.. +.. ...+|.++++|.+..+-||..++|+|...+.-
T Consensus 395 ~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g----------~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 395 LPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG----------FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh----------cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhh
Confidence 355556666777889999999999998665322 111 23578889999999999999999999987651
Q ss_pred --chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 389 --SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG--EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 389 --~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
.+.+..+. ...+..|++.+-+++..||+.|+.++..+-.. ++....+ .-.+..|+..+.++...+--+...|.
T Consensus 465 v~~~~~~~~f-~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l--~~IL~~l~~af~kYQ~KNLlILYDAI 541 (885)
T KOG2023|consen 465 VVQDSRDEYF-KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYL--EYILDQLVFAFGKYQKKNLLILYDAI 541 (885)
T ss_pred HhcCChHhhh-HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHH--HHHHHHHHHHHHHHhhcceehHHHHH
Confidence 11122221 12344455555578999999999999988542 2221111 11345555556555566667777888
Q ss_pred HHHHHhcCCCcchHHHHhcCcHHHHHHHH---HccCchhHHHHHHHHHHHHhhcCC--CCcccchhh-hccChHHHHHHH
Q 048757 465 GALANLAADDKCSLEVARAGGVHALVMLA---RSFMFEGVQEQAARALANLVAHGD--SNSNNAAVG-LETGALEALVQL 538 (864)
Q Consensus 465 ~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll---~~~~~~~v~~~a~~aL~~L~~~~~--~~~~~~~~~-~~~~~i~~L~~l 538 (864)
++|+.-....-++...++ -.+|+|++-- +++ +++ ..--+++|..++..-. --+...... +.-..+..-.+.
T Consensus 542 gtlAdsvg~~Ln~~~Yiq-iLmPPLi~KW~~lsd~-DKd-LfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~ 618 (885)
T KOG2023|consen 542 GTLADSVGHALNKPAYIQ-ILMPPLIEKWELLSDS-DKD-LFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQL 618 (885)
T ss_pred HHHHHHHHHhcCcHHHHH-HhccHHHHHHHhcCcc-cch-HHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHH
Confidence 888776544333332221 1244444432 221 222 2233444444443100 000000000 000111111111
Q ss_pred h-cC--------CCHHHHHHHHHHHHHhcCC-hhh-HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--c
Q 048757 539 T-FS--------KHEGVRQEAAGALWNLSFD-DRN-REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS--E 605 (864)
Q Consensus 539 L-~~--------~~~~v~~~a~~~L~~Ls~~-~~~-~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~ 605 (864)
+ +. ++.+....+...+..|+.. ... ...+.+.+....+...+.+ .-|+||+.|...|+.++.. +
T Consensus 619 ~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D---~~peVRQS~FALLGDltk~c~~ 695 (885)
T KOG2023|consen 619 LAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD---EVPEVRQSAFALLGDLTKACFE 695 (885)
T ss_pred HHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc---CChHHHHHHHHHHHHHHHHHHH
Confidence 1 11 2333444556666666554 222 3334456667777777776 8999999999999988753 2
Q ss_pred hhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CcccHHHHHhCCcHHHHHHHhcCCCcH-HHHHHHHHHHH
Q 048757 606 ANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF--NPGNALCIVEGGGVQALIHLCSSSLSK-MARFMAALALA 682 (864)
Q Consensus 606 ~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~L~~ll~~~~~~-~~r~~aa~aL~ 682 (864)
..+..+ ...++.|-.=+....-.+..+|+|+++.++. ..+.+ ..-..++..|+..++..+++ .+-.+.|.+++
T Consensus 696 ~v~p~~--~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~--~~v~~vl~~L~~iin~~~~~~tllENtAITIG 771 (885)
T KOG2023|consen 696 HVIPNL--ADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMK--QYVSPVLEDLITIINRQNTPKTLLENTAITIG 771 (885)
T ss_pred hccchH--HHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhh--hHHHHHHHHHHHHhcccCchHHHHHhhhhhhh
Confidence 221111 1233333333344456688899999999987 33333 22225667788888776644 56688999999
Q ss_pred HhhcCCcccee
Q 048757 683 YIVDGRMEDIA 693 (864)
Q Consensus 683 ~l~~~~~~~~~ 693 (864)
.++.-+++.++
T Consensus 772 rLg~~~Pe~vA 782 (885)
T KOG2023|consen 772 RLGYICPEEVA 782 (885)
T ss_pred hhhccCHHhcc
Confidence 99998887644
No 76
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=7.9e-06 Score=91.04 Aligned_cols=254 Identities=14% Similarity=0.062 Sum_probs=191.6
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHh-cC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCC-Ccc
Q 048757 401 IDILADLARST-NRLVAEEVVGGLWNL-SV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAAD-DKC 476 (864)
Q Consensus 401 i~~Lv~lL~~~-~~~v~~~a~~aL~~L-s~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~-~~~ 476 (864)
+..|++-|... ++..+..++.=|..+ +. +++.-..+--...+|.|+.+|.. ..+.++...|+++|.+|+.. ++.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~--E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSH--EHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHhhccch
Confidence 44555555443 666665555544432 22 33333334344578999999984 66789999999999999987 457
Q ss_pred hHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048757 477 SLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWN 556 (864)
Q Consensus 477 ~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 556 (864)
...+++.++||.|+.-|..-...++-++++.||..|++.+ -+.+.+.|++...+.+|.--...+|+.|+.+..|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H------~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN 320 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH------PKAILQAGALSAVLSYLDFFSIHAQRVALAIAAN 320 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc------cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999887667889999999999999842 2566778999999888877777899999999999
Q ss_pred hcCC--hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC----chhhHHhhhcCCHHHHHHHHccCC--
Q 048757 557 LSFD--DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS----EANSIAIGREGGVAPLIALARSAV-- 628 (864)
Q Consensus 557 Ls~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~----~~~~~~i~~~~~i~~Lv~lL~~~~-- 628 (864)
++.. ++.-..+++ ++|.|..+|.. .+....+.++-++..++.. ++.-+.+...+.+....+|+.-.+
T Consensus 321 ~Cksi~sd~f~~v~e--alPlL~~lLs~---~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~ 395 (1051)
T KOG0168|consen 321 CCKSIRSDEFHFVME--ALPLLTPLLSY---QDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTI 395 (1051)
T ss_pred HHhcCCCccchHHHH--HHHHHHHHHhh---ccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccc
Confidence 9876 333333433 68999999997 8888888888888888753 455577788899999999886433
Q ss_pred --HHHHHHHHHHHHHhcCC-cccHHHHHhCCcHHHHHHHhcC
Q 048757 629 --VDVHETAAGALWNLAFN-PGNALCIVEGGGVQALIHLCSS 667 (864)
Q Consensus 629 --~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~ 667 (864)
..+....+..|.-|+.+ +.....+.+.+....|.+++..
T Consensus 396 Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 396 LSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred ccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 34555678888888886 6677788888999999988864
No 77
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=4.1e-05 Score=76.12 Aligned_cols=273 Identities=18% Similarity=0.146 Sum_probs=177.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchh
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKV 391 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~ 391 (864)
..++.++.+.+|.+|..|..-+..+..... ..-.-.+...++.+.++++..++ ...|+.+|.|++.++..
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~--------~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l 75 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGL--------QSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEEL 75 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccch--------hhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHH
Confidence 358899999999999999998888764410 01111234467888999988766 67799999999999999
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHh------hCcHHHHHHHHcccCCCC-HHHHHHHH
Q 048757 392 AKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIAR------AGGIKALVDLIFKWSSWN-DGVLERAA 464 (864)
Q Consensus 392 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~------~g~i~~L~~lL~~~~~~~-~~v~~~a~ 464 (864)
+..+.+. -+..++..+-++........+..|.|++..++....+.. ..++..++....+ ++.+ ..-....+
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d-~~~n~~a~f~ylA 153 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCD-KSYNAYAEFHYLA 153 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhC-cccccccchhHHH
Confidence 9998877 666677777666556777888899999997765444421 1344444444433 1222 12234667
Q ss_pred HHHHHhcCCCcchHHHHhcCcHH--HHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhcc--ChHHHHH----
Q 048757 465 GALANLAADDKCSLEVARAGGVH--ALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLET--GALEALV---- 536 (864)
Q Consensus 465 ~~L~~L~~~~~~~~~i~~~~~i~--~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~--~~i~~L~---- 536 (864)
.++.||++....|..+.+...++ .++.+-. +++.--+...++.|.|.|.. ...+..+.+. ..++.++
T Consensus 154 ~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd----~~~h~~lL~e~~~lLp~iLlPla 228 (353)
T KOG2973|consen 154 PVFANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFD----AKLHEVLLDESINLLPAILLPLA 228 (353)
T ss_pred HHHHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhcc----chhHHHHhcchHHHHHHHHhhcC
Confidence 78999998888888777666432 2222222 22222334578899998873 2233333331 1222221
Q ss_pred -----------------HHhc-----CCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHH
Q 048757 537 -----------------QLTF-----SKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 537 -----------------~lL~-----~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
++|. .+++.+|..-+.+|.-|+....+|+.+.+.|+. ++++-+.. ...++++++.+
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvY-pilRElhk-~e~ded~~~ac 306 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVY-PILRELHK-WEEDEDIREAC 306 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCch-HHHHHHhc-CCCcHHHHHHH
Confidence 2332 247889999999999999999999998887554 55555554 24678887766
Q ss_pred HHHHHHhcc
Q 048757 595 AGALWGLSL 603 (864)
Q Consensus 595 ~~aL~~L~~ 603 (864)
-....-+..
T Consensus 307 e~vvq~Lv~ 315 (353)
T KOG2973|consen 307 EQVVQMLVR 315 (353)
T ss_pred HHHHHHHHh
Confidence 666554444
No 78
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=6.2e-05 Score=83.95 Aligned_cols=337 Identities=12% Similarity=0.096 Sum_probs=180.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-Cc
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DS 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~ 389 (864)
.|.+.+++++.++.+|+.|+.+...+.....+. -+..++.--.+|.+.+..|...++..+..++. ++
T Consensus 144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l------------~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~ 211 (866)
T KOG1062|consen 144 APEVERLLQHRDPYIRKKAALCAVRFIRKVPDL------------VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISP 211 (866)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH------------HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCH
Confidence 367778888889999999998888876444322 14456666777777778888888888888777 45
Q ss_pred hhHHHHHhcCcHHHHHHHHcc---------------CCHHHHHHHHHHHHHhcCCC-CcHHHHHhhCcHHHHHHHHcccC
Q 048757 390 KVAKAVSENGGIDILADLARS---------------TNRLVAEEVVGGLWNLSVGE-DHKGAIARAGGIKALVDLIFKWS 453 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~---------------~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~ 453 (864)
+.-..+.+ .++.|+..|+. .+|.+|...++.|+-|..++ +..+.|.+ .|.++..+..
T Consensus 212 ~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntd 284 (866)
T KOG1062|consen 212 DALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTD 284 (866)
T ss_pred HHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhccc
Confidence 54444443 45556665531 36778888888888876643 33333322 2233332200
Q ss_pred ---CCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccC
Q 048757 454 ---SWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETG 530 (864)
Q Consensus 454 ---~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~ 530 (864)
.....+...++.++..+-.+..-+. -++..|-++|.+. +..++..++..|....... +...+.
T Consensus 285 sskN~GnAILYE~V~TI~~I~~~~~Lrv-----lainiLgkFL~n~-d~NirYvaLn~L~r~V~~d---~~avqr----- 350 (866)
T KOG1062|consen 285 SSKNAGNAILYECVRTIMDIRSNSGLRV-----LAINILGKFLLNR-DNNIRYVALNMLLRVVQQD---PTAVQR----- 350 (866)
T ss_pred ccccchhHHHHHHHHHHHhccCCchHHH-----HHHHHHHHHhcCC-ccceeeeehhhHHhhhcCC---cHHHHH-----
Confidence 0011233334444333322222111 1233444444442 3455555555555554421 111010
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--chhh
Q 048757 531 ALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS--EANS 608 (864)
Q Consensus 531 ~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~~~~ 608 (864)
-=..+++.|+++|..++..|.+.+..|......+. .+..|+.+|.. .+++.+...+.-+..++.. |+.+
T Consensus 351 Hr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~------mv~eLl~fL~~---~d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 351 HRSTILECLKDPDVSIKRRALELSYALVNESNVRV------MVKELLEFLES---SDEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH------HHHHHHHHHHh---ccHHHHHHHHHHHHHHHHhcCCcch
Confidence 01245566666666666666666666543322221 23445555554 4555555555555555432 2221
Q ss_pred HH-------------hhhcCCHHHHHHHHcc-------------------------CCHHHHHHHHHHHHHhcC---Cc-
Q 048757 609 IA-------------IGREGGVAPLIALARS-------------------------AVVDVHETAAGALWNLAF---NP- 646 (864)
Q Consensus 609 ~~-------------i~~~~~i~~Lv~lL~~-------------------------~~~~v~~~a~~aL~~L~~---~~- 646 (864)
.. ++....+..++.++.+ ..+.....|.|+++..+. +.
T Consensus 422 W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~ 501 (866)
T KOG1062|consen 422 WHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGA 501 (866)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCc
Confidence 11 1222333444444433 234556678888887662 22
Q ss_pred --ccHHHHHhCCcHHHHHHHhcCC-CcHHHHHHHHHHHHHhhcCCc
Q 048757 647 --GNALCIVEGGGVQALIHLCSSS-LSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 647 --~~~~~i~~~g~v~~L~~ll~~~-~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+....+-++.++..|.+++.+. .+..++.+|..||..+...-.
T Consensus 502 ~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~ 547 (866)
T KOG1062|consen 502 NEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFH 547 (866)
T ss_pred cccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcc
Confidence 1222444566788888888653 247789999999988776544
No 79
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=1.2e-05 Score=88.79 Aligned_cols=348 Identities=13% Similarity=0.040 Sum_probs=211.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCH-HHHHHHHHHHHHHhCCchhH
Q 048757 314 LLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPE-GLQSEVAKAIANLSVDSKVA 392 (864)
Q Consensus 314 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~~L~~~~~~~ 392 (864)
+++.|.++.|.....|+.+++.++...-.+ ..+ .+.++.|+.-..++.+ .+++.++.+|+.++.+-.-.
T Consensus 95 il~tL~~~ep~~~s~Aaq~va~IA~~ElP~-----n~w-----p~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe 164 (859)
T KOG1241|consen 95 ILRTLGSPEPRRPSSAAQCVAAIACIELPQ-----NQW-----PELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE 164 (859)
T ss_pred HHHHcCCCCCCccchHHHHHHHHHHhhCch-----hhC-----HHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH
Confidence 334455566666666666666655322111 001 2334445554444443 48899999999999953222
Q ss_pred HHHHhc-CcHHHHHHHHc--cCCHHHHHHHHHHHHHhcC-------CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHH
Q 048757 393 KAVSEN-GGIDILADLAR--STNRLVAEEVVGGLWNLSV-------GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLER 462 (864)
Q Consensus 393 ~~i~~~-g~i~~Lv~lL~--~~~~~v~~~a~~aL~~Ls~-------~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~ 462 (864)
...-.. ..+..++.-.+ .++..+|-.|+.+|.|.-. ++..|..|. +...+ .+.+++.+++..
T Consensus 165 vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iM-----qvvcE---atq~~d~~i~~a 236 (859)
T KOG1241|consen 165 VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIM-----QVVCE---ATQSPDEEIQVA 236 (859)
T ss_pred HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceee-----eeeee---cccCCcHHHHHH
Confidence 222222 23555555553 3467799999999988522 111222221 11222 234688899999
Q ss_pred HHHHHHHhcCCC-cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCC-------------CCccc--chhh
Q 048757 463 AAGALANLAADD-KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGD-------------SNSNN--AAVG 526 (864)
Q Consensus 463 a~~~L~~L~~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~-------------~~~~~--~~~~ 526 (864)
|..||..+..-. +....-........-+..+++ +++++..++.+...++|...- ..|.. -..-
T Consensus 237 a~~ClvkIm~LyY~~m~~yM~~alfaitl~amks-~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~ 315 (859)
T KOG1241|consen 237 AFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKS-DNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQ 315 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHH
Confidence 999998886542 222222222233344455565 578899999988888875210 00000 0011
Q ss_pred hccChHHHHHHHhcCCC-------HHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHh-cCCCCHHHHHHHHHHH
Q 048757 527 LETGALEALVQLTFSKH-------EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRS-CSSSSQGLQERAAGAL 598 (864)
Q Consensus 527 ~~~~~i~~L~~lL~~~~-------~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~v~~~A~~aL 598 (864)
.-.+.+|.|+++|...+ -....+|..+|.-++.. .....+++.+.+++. -.+++.+-|+.|+.++
T Consensus 316 a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAF 388 (859)
T KOG1241|consen 316 ALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAF 388 (859)
T ss_pred HHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHH
Confidence 11266788888876521 12445555555544322 233467777777763 2458899999999999
Q ss_pred HHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCccc--HHHHHhCCcHHHHHHHhcCCCcHHHHH
Q 048757 599 WGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGN--ALCIVEGGGVQALIHLCSSSLSKMARF 675 (864)
Q Consensus 599 ~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~--~~~i~~~g~v~~L~~ll~~~~~~~~r~ 675 (864)
+..-.. ++.+..-.-.+++|.++.++.++.-.|+..++|+|++++..-.. -......+.++.|++-+.+. |.+-.
T Consensus 389 GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De--Prva~ 466 (859)
T KOG1241|consen 389 GSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE--PRVAS 466 (859)
T ss_pred HhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC--chHHH
Confidence 998876 44454555678999999999998899999999999999974321 12333456677777777664 77889
Q ss_pred HHHHHHHHhhcCCc
Q 048757 676 MAALALAYIVDGRM 689 (864)
Q Consensus 676 ~aa~aL~~l~~~~~ 689 (864)
++.|++..++++..
T Consensus 467 N~CWAf~~Laea~~ 480 (859)
T KOG1241|consen 467 NVCWAFISLAEAAY 480 (859)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999986544
No 80
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.00015 Score=82.34 Aligned_cols=336 Identities=17% Similarity=0.138 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCchhHHHHHhcCcH
Q 048757 323 QEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSVDSKVAKAVSENGGI 401 (864)
Q Consensus 323 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i 401 (864)
++-...+..+|.|+...+.+.+++=.. ...--|.++.+...+.. .++.++..|+..+..++.+.+.-..++..+.+
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgS---e~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL 1815 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGS---EILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccc---hhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHH
Confidence 345567888999988776654432221 12334677777777765 77899999999999999999999999999999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcc--h--
Q 048757 402 DILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKC--S-- 477 (864)
Q Consensus 402 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~--~-- 477 (864)
..|+.+|.+ -|..++.++.+|..|+++++....-.++|++.-+.+++-. +.++.++..++..++.+..+.-. +
T Consensus 1816 ~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~--~~~~QqRAqaAeLlaKl~Adkl~GPrV~ 1892 (2235)
T KOG1789|consen 1816 TTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCL--TNSDQQRAQAAELLAKLQADKLTGPRVT 1892 (2235)
T ss_pred HHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhc--cCcHHHHHHHHHHHHHhhhccccCCcee
Confidence 999998865 7888999999999999999888888899999988888864 67789999999999999876431 1
Q ss_pred HH--------HH--hcCcHHHHHHHHHccC-chh------HHHHHHHHHHHHhh----cCCCCcc---------------
Q 048757 478 LE--------VA--RAGGVHALVMLARSFM-FEG------VQEQAARALANLVA----HGDSNSN--------------- 521 (864)
Q Consensus 478 ~~--------i~--~~~~i~~Lv~ll~~~~-~~~------v~~~a~~aL~~L~~----~~~~~~~--------------- 521 (864)
.. +. -.++.+..++++...+ +|+ .+......+..+.. ....++.
T Consensus 1893 ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea 1972 (2235)
T KOG1789|consen 1893 ITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEA 1972 (2235)
T ss_pred eehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhh
Confidence 00 11 1233456666665421 122 22222222332221 0000110
Q ss_pred ----------cchhhhcc------------ChHHHHHHHhcCCCHH--HHHHHHHHHHH-hcCChhhHHHHHHCCChHHH
Q 048757 522 ----------NAAVGLET------------GALEALVQLTFSKHEG--VRQEAAGALWN-LSFDDRNREAIAAAGGVEAL 576 (864)
Q Consensus 522 ----------~~~~~~~~------------~~i~~L~~lL~~~~~~--v~~~a~~~L~~-Ls~~~~~~~~i~~~~~i~~L 576 (864)
+|..+.+. +.++.+..++...+++ ....-..++.. +..++.....+-..|.+|.+
T Consensus 1973 ~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~ 2052 (2235)
T KOG1789|consen 1973 DKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKF 2052 (2235)
T ss_pred ccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHH
Confidence 01111111 3344444555443332 11122222222 23344445555567889999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CcccHHHHHh
Q 048757 577 VALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF--NPGNALCIVE 654 (864)
Q Consensus 577 v~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~ 654 (864)
+..+.. .+..+-..|.+.|..|+.++-+...+.....+.+++..++... ....-|+.+|.++.. ..+.-....+
T Consensus 2053 ~~Am~~---~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK 2128 (2235)
T KOG1789|consen 2053 CTAMCL---QNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLK 2128 (2235)
T ss_pred HHHHHh---cCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 999886 4455558899999999999999999999888888999987544 344478999999876 2233346678
Q ss_pred CCcHHHHHHHhcCC
Q 048757 655 GGGVQALIHLCSSS 668 (864)
Q Consensus 655 ~g~v~~L~~ll~~~ 668 (864)
.|.||.|.++|...
T Consensus 2129 ~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2129 CGLVPYLLQLLDSS 2142 (2235)
T ss_pred cCcHHHHHHHhccc
Confidence 89999999999654
No 81
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=0.00012 Score=73.13 Aligned_cols=342 Identities=13% Similarity=0.090 Sum_probs=229.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
.|.|-.-|..+|..++.-++..++.+..+.+.|. -.....++..+.++.++..+..+|.++...|.+.+..++..|.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtna---VseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNA---VSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhh---HHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 3555566778899999999999999887776542 1223456688999999999999999999999999999999998
Q ss_pred hHHHHHhcCcHHH--HHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 391 VAKAVSENGGIDI--LADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 391 ~~~~i~~~g~i~~--Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
.-..+.+...... +.++--.-+.-++..+...+..+.+ +++........|.+..|..-++. ..+.-|+..+....
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkG--teDtLVianciElv 238 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKG--TEDTLVIANCIELV 238 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcC--CcceeehhhHHHHH
Confidence 8888888776554 3444434466677778888777754 67777777788888888877763 45666778888888
Q ss_pred HHhcCCCcchHHHHhcCcHHHHHHHHHccCc-hhHHHHHHHHHHHHhhcCCCCcccchhhhcc-------ChHHHHHHHh
Q 048757 468 ANLAADDKCSLEVARAGGVHALVMLARSFMF-EGVQEQAARALANLVAHGDSNSNNAAVGLET-------GALEALVQLT 539 (864)
Q Consensus 468 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~-~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~-------~~i~~L~~lL 539 (864)
..|++....++.+.+.|.|+.+..++...+. |--...+......+-.. ++...+.+. -+++..+++.
T Consensus 239 teLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-----eaimdvseeaicealiiaidgsfEmi 313 (524)
T KOG4413|consen 239 TELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-----EAIMDVSEEAICEALIIAIDGSFEMI 313 (524)
T ss_pred HHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-----hHHhhcCHHHHHHHHHHHHHhhHHhh
Confidence 8998888888888999999999988865432 22222233333333221 111111111 2344455677
Q ss_pred cCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCC--hHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc---Cchh-------
Q 048757 540 FSKHEGVRQEAAGALWNLSFDDRNREAIAAAGG--VEALVALVRSCSSSSQGLQERAAGALWGLSL---SEAN------- 607 (864)
Q Consensus 540 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~--i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~---~~~~------- 607 (864)
+..|++.++.|..+++.+..+.++.+.+...|- .+.++.-..+. .-..-++.+..+|.+++. -+..
T Consensus 314 EmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdq--nahakqeaaihaLaaIagelrlkpeqitDgka 391 (524)
T KOG4413|consen 314 EMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQ--NAHAKQEAAIHALAAIAGELRLKPEQITDGKA 391 (524)
T ss_pred hcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcc--cccchHHHHHHHHHHhhccccCChhhccccHH
Confidence 788999999999999999998888887776542 33333333221 112234555666666653 2221
Q ss_pred ----hHHhhh-------cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHH-HHhCCcHHHHHHH
Q 048757 608 ----SIAIGR-------EGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALC-IVEGGGVQALIHL 664 (864)
Q Consensus 608 ----~~~i~~-------~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~-i~~~g~v~~L~~l 664 (864)
+..+.+ -...+.....++.+.++++..+...+..++..|=.... +.++|.|+..++-
T Consensus 392 eerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 392 EERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeeccc
Confidence 111111 12344566677778899999999999999876654444 4455555555443
No 82
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.41 E-value=4.4e-07 Score=113.68 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=75.6
Q ss_pred hcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCC
Q 048757 105 YCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSL 184 (864)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L 184 (864)
..+++|+.|++++|..++. +..-. ++++|++|+|++|..+.... ...++|++|+++++ .++. +......+++|
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~p-~~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L 871 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTFP-DISTNISDLNLSRT-GIEE--VPWWIEKFSNL 871 (1153)
T ss_pred hCCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcccccc-ccccccCEeECCCC-CCcc--ChHHHhcCCCC
Confidence 4678888999988875542 21111 57899999999998764321 13478999999885 3442 22334579999
Q ss_pred cEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 185 VGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 185 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
+.|+++++.. ...+......+++|+.+++.+|+.++..
T Consensus 872 ~~L~L~~C~~-L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 872 SFLDMNGCNN-LQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CEEECCCCCC-cCccCcccccccCCCeeecCCCcccccc
Confidence 9999988321 1122233456688999999999988754
No 83
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.38 E-value=0.00011 Score=80.95 Aligned_cols=453 Identities=13% Similarity=0.060 Sum_probs=226.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC--Cchh
Q 048757 314 LLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV--DSKV 391 (864)
Q Consensus 314 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~--~~~~ 391 (864)
+-..|.+.+..+|..++.++..++.... |+..+++ ..++.+|-+-.++........-+.+++.|.- ++++
T Consensus 558 i~~gl~De~qkVR~itAlalsalaeaa~------Pygie~f--DsVlkpLwkgir~hrgk~laafLkAigyliplmd~ey 629 (1172)
T KOG0213|consen 558 IEHGLKDEQQKVRTITALALSALAEAAT------PYGIEQF--DSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEY 629 (1172)
T ss_pred HHHhhcccchhhhhHHHHHHHHHHHhcC------CcchHHH--HHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHH
Confidence 3334456678889888888888774332 1111111 1223333333333333344444556666655 2333
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhh--------------------------------
Q 048757 392 AKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARA-------------------------------- 439 (864)
Q Consensus 392 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~-------------------------------- 439 (864)
...+ ....+-.+.+=..++|.+.+.-++..+..+|..+..-......
T Consensus 630 a~yy-Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~i 708 (1172)
T KOG0213|consen 630 ASYY-TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEI 708 (1172)
T ss_pred HHHh-HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHH
Confidence 2222 2233444555556778888888888888887644333333333
Q ss_pred ----CcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc--chHHHHhcCcHHHHHHHHHccCc-hhHHHHHHHHHHHH
Q 048757 440 ----GGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK--CSLEVARAGGVHALVMLARSFMF-EGVQEQAARALANL 512 (864)
Q Consensus 440 ----g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~--~~~~i~~~~~i~~Lv~ll~~~~~-~~v~~~a~~aL~~L 512 (864)
|.-+.+-+.+....++++..+..++.+...+...-. .-+.-.+...+..++..++..+. ..+......++.+-
T Consensus 709 a~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~ 788 (1172)
T KOG0213|consen 709 AAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA 788 (1172)
T ss_pred HHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 333333333333333444444433333333221100 00011111223333333333221 11222222222211
Q ss_pred hhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhH---HHHHHCCChHHHHHHHHhcCCCCHH
Q 048757 513 VAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNR---EAIAAAGGVEALVALVRSCSSSSQG 589 (864)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~---~~i~~~~~i~~Lv~lL~~~~~~~~~ 589 (864)
-- .|..-.-..++...+..|+++.+.+|+.|+.++..++.--..+ +.+...| -.|.+.|.. ..|+
T Consensus 789 lg-------~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylge---eypE 856 (1172)
T KOG0213|consen 789 LG-------GRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGE---EYPE 856 (1172)
T ss_pred Hh-------hccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCc---ccHH
Confidence 10 0000011123455667788999999999999999886542222 1122222 235556665 7889
Q ss_pred HHHHHHHHHHHhccCchhhHHh-hhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcH-HHHHHHhcC
Q 048757 590 LQERAAGALWGLSLSEANSIAI-GREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGV-QALIHLCSS 667 (864)
Q Consensus 590 v~~~A~~aL~~L~~~~~~~~~i-~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v-~~L~~ll~~ 667 (864)
+.-..++|+..+...-...... --.+.+|.|...|++..+.|+++.+..++.++...+......+.--| =-|+++|.+
T Consensus 857 vLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLka 936 (1172)
T KOG0213|consen 857 VLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKA 936 (1172)
T ss_pred HHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 9888888887765432111111 12467889999999999999999999999999743322111111111 137788887
Q ss_pred CCcHHHHHHHHHHHHHhhcC--CccceeeecccccCCC--cccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChh
Q 048757 668 SLSKMARFMAALALAYIVDG--RMEDIASIGSSLEGTS--ESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQ 743 (864)
Q Consensus 668 ~~~~~~r~~aa~aL~~l~~~--~~~~~~~~~~ll~~~~--~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~ 743 (864)
.+ ..+|.+|..++++++.. -.+..+.+...++..+ ..||...| +.-.+..+ ..+..+++++..+..|+
T Consensus 937 hk-K~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtva----IaIVaE~c---~pFtVLPalmneYrtPe 1008 (1172)
T KOG0213|consen 937 HK-KEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVA----IAIVAETC---GPFTVLPALMNEYRTPE 1008 (1172)
T ss_pred HH-HHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhh----hhhhhhhc---CchhhhHHHHhhccCch
Confidence 75 88999999999988752 1122222222333332 23333332 21122222 12345666666665554
Q ss_pred hHHHHhhccchhHHhccccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHH
Q 048757 744 AFATALASAVPKSLAQITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVAL 801 (864)
Q Consensus 744 ~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al 801 (864)
....-...-|+.-+=+- +.+.+. -+--...|.|.+.|.+.|+..|.-|+.++
T Consensus 1009 ~nVQnGVLkalsf~Fey-----igemsk-dYiyav~PlleDAlmDrD~vhRqta~~~I 1060 (1172)
T KOG0213|consen 1009 ANVQNGVLKALSFMFEY-----IGEMSK-DYIYAVTPLLEDALMDRDLVHRQTAMNVI 1060 (1172)
T ss_pred hHHHHhHHHHHHHHHHH-----HHHHhh-hHHHHhhHHHHHhhccccHHHHHHHHHHH
Confidence 43333322232221111 111110 00001237777888899999998887776
No 84
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=7.7e-05 Score=82.86 Aligned_cols=307 Identities=16% Similarity=0.139 Sum_probs=213.5
Q ss_pred HHHHHhhcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccCC------ccc-ccchHh--HH-HHHHhCCHHHHHHHhcCC
Q 048757 303 DDFWLRQGATLLLSLMES--SQQEVQERAAYAVATFVVIDD------QNA-MVDCQR--AE-AILRHGGVRLLLDLARSP 370 (864)
Q Consensus 303 ~~~~~~~gv~~L~~lL~~--~~~~v~~~a~~~L~~L~~~~~------~~~-~~~~~~--~~-~i~~~~~i~~L~~lL~~~ 370 (864)
+.-+-.+|+++|++.|+. .|+++...+...+.++...++ +.. +.+.+. .+ .+...+.|..++..+...
T Consensus 55 R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~ 134 (970)
T KOG0946|consen 55 REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF 134 (970)
T ss_pred HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh
Confidence 344556889999999975 589999999999999988775 111 122221 12 344567889999999999
Q ss_pred CHHHHHHHHHHHHHHhC--CchhHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHH
Q 048757 371 PEGLQSEVAKAIANLSV--DSKVAKAVSE-NGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALV 446 (864)
Q Consensus 371 ~~~~~~~a~~~L~~L~~--~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~ 446 (864)
|-.||..+...+..+-. .++.+..+.. .-||..|+.+|.+....+|..+.-.|..+..+ +..+..++=.++...|.
T Consensus 135 DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLf 214 (970)
T KOG0946|consen 135 DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLF 214 (970)
T ss_pred chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 99999999999999765 3477776654 45799999999998889999999999999875 45566667788999999
Q ss_pred HHHcccCCC-CHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHcc---Cc----hhHHH-----HHHHHHHHH
Q 048757 447 DLIFKWSSW-NDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSF---MF----EGVQE-----QAARALANL 512 (864)
Q Consensus 447 ~lL~~~~~~-~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~---~~----~~v~~-----~a~~aL~~L 512 (864)
.+++.-+.. ..-|.+.|...|-||-.++. ++..+.+.+.||.|.++|.-. +. ...+. .++.+++.+
T Consensus 215 sIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~l 294 (970)
T KOG0946|consen 215 SIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSL 294 (970)
T ss_pred HHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHh
Confidence 999863312 22477899999999998876 777888888899999887542 11 11111 244555555
Q ss_pred hhcCCC---CcccchhhhccChHHHHHHHhcCC--CHHHHHHHHHHHHHhcCC-hhhHHHHHHCCC------hHHH----
Q 048757 513 VAHGDS---NSNNAAVGLETGALEALVQLTFSK--HEGVRQEAAGALWNLSFD-DRNREAIAAAGG------VEAL---- 576 (864)
Q Consensus 513 ~~~~~~---~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~------i~~L---- 576 (864)
...+.. ...+++.+...+++..|..++.++ ..+++..+.-+++++... ..++..+.+..+ .+.+
T Consensus 295 VsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvll 374 (970)
T KOG0946|consen 295 VSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLL 374 (970)
T ss_pred cCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHH
Confidence 442211 113346788899999999988776 457888888888888776 445666654321 1222
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhcc-CchhhHHh
Q 048757 577 VALVRSCSSSSQGLQERAAGALWGLSL-SEANSIAI 611 (864)
Q Consensus 577 v~lL~~~~~~~~~v~~~A~~aL~~L~~-~~~~~~~i 611 (864)
..+..+ ......|.+...++..+.. +.+....+
T Consensus 375 msm~ne--~q~~~lRcAv~ycf~s~l~dN~~gq~~~ 408 (970)
T KOG0946|consen 375 MSMFNE--KQPFSLRCAVLYCFRSYLYDNDDGQRKF 408 (970)
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHhcchhhHHHH
Confidence 222222 3567778877777776543 34444333
No 85
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=0.00026 Score=78.05 Aligned_cols=214 Identities=13% Similarity=0.122 Sum_probs=149.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-Cch
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSK 390 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~ 390 (864)
+-++.+|++.-+-+|..|...+..+...-. +++ ...+|.|++-|.++|+.|+..|+..++.|+. +|.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYP----------eAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYP----------EAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhh----------HhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 568899999999999999999988763332 222 4578999999999999999999999999998 676
Q ss_pred hHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 391 VAKAVSENGGIDILADLAR-STNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
+.-.+ -|.+.++|- +.+-.+.-.....+++|+-- |.... ..++++.+++.+ ..-..+...+..++.
T Consensus 215 nyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~s--T~AmSLlYECvNTVV 282 (877)
T KOG1059|consen 215 NYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMES--TVAMSLLYECVNTVV 282 (877)
T ss_pred ccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHh--hHHHHHHHHHHHHhe
Confidence 55433 356777774 45667778888899998763 33322 268889999974 344555555555544
Q ss_pred HhcCCCc--chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHH
Q 048757 469 NLAADDK--CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGV 546 (864)
Q Consensus 469 ~L~~~~~--~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 546 (864)
..+.... ...+-+ .-++..|-.++.+ +++.++.-++-|+..+...+ +.... .--+.+++.|.+.|+.+
T Consensus 283 a~s~s~g~~d~~asi-qLCvqKLr~fied-sDqNLKYlgLlam~KI~ktH---p~~Vq-----a~kdlIlrcL~DkD~SI 352 (877)
T KOG1059|consen 283 AVSMSSGMSDHSASI-QLCVQKLRIFIED-SDQNLKYLGLLAMSKILKTH---PKAVQ-----AHKDLILRCLDDKDESI 352 (877)
T ss_pred eehhccCCCCcHHHH-HHHHHHHhhhhhc-CCccHHHHHHHHHHHHhhhC---HHHHH-----HhHHHHHHHhccCCchh
Confidence 3322111 111111 1245666667777 56999999999999998642 21111 11245678899999999
Q ss_pred HHHHHHHHHHhcC
Q 048757 547 RQEAAGALWNLSF 559 (864)
Q Consensus 547 ~~~a~~~L~~Ls~ 559 (864)
|..|+..+..+..
T Consensus 353 RlrALdLl~gmVs 365 (877)
T KOG1059|consen 353 RLRALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998854
No 86
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=0.00011 Score=80.33 Aligned_cols=365 Identities=15% Similarity=0.071 Sum_probs=219.7
Q ss_pred HHHHHhhCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCC
Q 048757 291 LMRISKKNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSP 370 (864)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~ 370 (864)
+-++.....+....+ ++.+++-+..+.+.+|+....+|..+....+. .......+.+.+++...
T Consensus 83 ~a~~~~~~d~~~~~~-----~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~-----------~~~~~~l~~l~~ll~~~ 146 (569)
T KOG1242|consen 83 LAFHLQIVDPRPISI-----IEILLEELDTPSKSVQRAVSTCLPPLVVLSKG-----------LSGEYVLELLLELLTST 146 (569)
T ss_pred HHHhccccCcchhHH-----HHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhc-----------cCHHHHHHHHHHHhccc
Confidence 444444444443333 47888888899999999999999887533321 11234566778888888
Q ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHH-HHHHHHHhcCCCCcHHHHHhhCcHHHHHHHH
Q 048757 371 PEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEE-VVGGLWNLSVGEDHKGAIARAGGIKALVDLI 449 (864)
Q Consensus 371 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~-a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL 449 (864)
+...+..++..++.+..+. .-..+.+.+.+..|.+...+.....++. +.-+....+..-. ...+.+.++.+-.++
T Consensus 147 ~~~~~~~aa~~~ag~v~g~-~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il 222 (569)
T KOG1242|consen 147 KIAERAGAAYGLAGLVNGL-GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSIL 222 (569)
T ss_pred cHHHHhhhhHHHHHHHcCc-HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHH
Confidence 8888999999999877754 2233555666777888777655444332 3222222211000 123455667777777
Q ss_pred cccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhcc
Q 048757 450 FKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLET 529 (864)
Q Consensus 450 ~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~ 529 (864)
.+..+....+|+.|..+...+...-.. ..-.-.++.++.-+... .......++..+..++.. ...+-.....
T Consensus 223 ~~~~d~~~~Vr~Aa~~a~kai~~~~~~---~aVK~llpsll~~l~~~-kWrtK~aslellg~m~~~----ap~qLs~~lp 294 (569)
T KOG1242|consen 223 TNFGDKINKVREAAVEAAKAIMRCLSA---YAVKLLLPSLLGSLLEA-KWRTKMASLELLGAMADC----APKQLSLCLP 294 (569)
T ss_pred HHhhccchhhhHHHHHHHHHHHHhcCc---chhhHhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHh----chHHHHHHHh
Confidence 776677888998888776655332110 00011234444444432 355677888888888874 2233444556
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHH--H----------------------HH--------HCCChHHHH
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNRE--A----------------------IA--------AAGGVEALV 577 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~--~----------------------i~--------~~~~i~~Lv 577 (864)
.++|.+.+.|.+.++++|..+..++..++.-.++.. . +. +...+..++
T Consensus 295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmv 374 (569)
T KOG1242|consen 295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMV 374 (569)
T ss_pred HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHH
Confidence 899999999999999999999999988855322211 0 00 111233333
Q ss_pred HHHHhc-CCCCHHHHHHHHHHHHHhccCchhhHHhhh--cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHh
Q 048757 578 ALVRSC-SSSSQGLQERAAGALWGLSLSEANSIAIGR--EGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVE 654 (864)
Q Consensus 578 ~lL~~~-~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~ 654 (864)
.+|.+. ...+...+..++.+++|++.--+....+.. ...+|-|=..+.+..|++|..++.+|+.+-..-.....
T Consensus 375 piL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f--- 451 (569)
T KOG1242|consen 375 PILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF--- 451 (569)
T ss_pred HHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---
Confidence 333321 014667778899999998864322222221 12333344444566799999999999888754333322
Q ss_pred CCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 655 GGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 655 ~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
.+.+|.|.+.+.+.....-+.-++..|..+..
T Consensus 452 ~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~ 483 (569)
T KOG1242|consen 452 DDLIPELSETLTSEKSLVDRSGAAQDLSEVLA 483 (569)
T ss_pred cccccHHHHhhccchhhhhhHHHhhhHHHHHh
Confidence 56777888887766544555556666654433
No 87
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.37 E-value=4.5e-06 Score=72.13 Aligned_cols=148 Identities=20% Similarity=0.163 Sum_probs=118.0
Q ss_pred ChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhh
Q 048757 530 GALEALVQLTF-SKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANS 608 (864)
Q Consensus 530 ~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~ 608 (864)
+.++.|+.-.. ..+.+.++....-|+|.+.++.+-..+.+..+++.++.-|.. +++.+.+.+.+.|+|+|.++.+.
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e---~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE---QNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc---ccHHHHHHhHHHHHhhccChHHH
Confidence 34556665443 468889999999999999999999999999999999999987 89999999999999999999999
Q ss_pred HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHH
Q 048757 609 IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFN-PGNALCIVEGGGVQALIHLCSSSLSKMARFMAALAL 681 (864)
Q Consensus 609 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL 681 (864)
..|.+.++++.++..+.++++.+...|+.+|..|+.. ...+..+....++....+.-.+. +...|..|-..|
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl 165 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESK-SHDERNLASAFL 165 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 9999999999999999999999999999999999974 34566666655555544443222 233444444444
No 88
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.30 E-value=0.0002 Score=76.64 Aligned_cols=338 Identities=13% Similarity=0.062 Sum_probs=196.1
Q ss_pred ccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHH-HhC-CchhHHH
Q 048757 319 ESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIAN-LSV-DSKVAKA 394 (864)
Q Consensus 319 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~-L~~-~~~~~~~ 394 (864)
-++|+.+|..|-.-|.++..+|.+ ..+..+++.|-+ .++..|..+.-+|.| |.. +++-+..
T Consensus 15 LspD~n~rl~aE~ql~~l~~~dF~---------------qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~ 79 (858)
T COG5215 15 LSPDPNARLRAEAQLLELQSGDFE---------------QFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKG 79 (858)
T ss_pred CCCCCCccccHHHHHHHhccccHH---------------HHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 458899999999999998877642 234455665544 456677777777776 333 3332222
Q ss_pred HHhc--C-------cHH-HHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc--CCCCHHHHHH
Q 048757 395 VSEN--G-------GID-ILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW--SSWNDGVLER 462 (864)
Q Consensus 395 i~~~--g-------~i~-~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~~~v~~~ 462 (864)
..+. | -+. ..++.|+++.|..-..|+.+++.++..+ .-.+.-|-|+..+... ......++..
T Consensus 80 ~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E------lp~~~wp~lm~~mv~nvg~eqp~~~k~~ 153 (858)
T COG5215 80 CSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME------LPNSLWPGLMEEMVRNVGDEQPVSGKCE 153 (858)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh------CccccchHHHHHHHHhccccCchHhHHH
Confidence 2110 0 011 2345678888888888999998887532 1122334444433321 1345578889
Q ss_pred HHHHHHHhcCCCcchHHHHhcCc-H-HHHHHHHHccCchhHHHHHHHHHHH-HhhcC--CCCcccchhhhccChHHHHHH
Q 048757 463 AAGALANLAADDKCSLEVARAGG-V-HALVMLARSFMFEGVQEQAARALAN-LVAHG--DSNSNNAAVGLETGALEALVQ 537 (864)
Q Consensus 463 a~~~L~~L~~~~~~~~~i~~~~~-i-~~Lv~ll~~~~~~~v~~~a~~aL~~-L~~~~--~~~~~~~~~~~~~~~i~~L~~ 537 (864)
+..++++++....-...+...+. + ......++.+++..+|..++.||.+ +.... -.+++.|. -.++..++
T Consensus 154 sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erN-----y~mqvvce 228 (858)
T COG5215 154 SLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERN-----YFMQVVCE 228 (858)
T ss_pred HHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhc-----hhheeeeh
Confidence 99999999987554333333333 2 2333445566677889999999988 32210 00122222 23455566
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc-hhhHH-----
Q 048757 538 LTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE-ANSIA----- 610 (864)
Q Consensus 538 lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~-~~~~~----- 610 (864)
.-+.++.+++..|.++|..+-.- =+..+...+.-......+.+++ +++++...|+.--..++..+ +..-.
T Consensus 229 atq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks---~nd~va~qavEfWsticeEeid~~~e~~~~p 305 (858)
T COG5215 229 ATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS---QNDEVAIQAVEFWSTICEEEIDGEMEDKYLP 305 (858)
T ss_pred hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 77788999999999999877432 1222233343344455666775 88999988888766666421 11000
Q ss_pred --------hh---hcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHH
Q 048757 611 --------IG---REGGVAPLIALARSA-------VVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKM 672 (864)
Q Consensus 611 --------i~---~~~~i~~Lv~lL~~~-------~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~ 672 (864)
|. -..++|.|+++|... +-.+...|..+|.-++....++ |.+. ++...-+=+++++ ..
T Consensus 306 e~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~--i~~p-Vl~FvEqni~~~~-w~ 381 (858)
T COG5215 306 EVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK--IMRP-VLGFVEQNIRSES-WA 381 (858)
T ss_pred cCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH--hHHH-HHHHHHHhccCch-hh
Confidence 11 123678899999542 2356777777777776433221 2211 2222333344443 66
Q ss_pred HHHHHHHHHHHhhcCCc
Q 048757 673 ARFMAALALAYIVDGRM 689 (864)
Q Consensus 673 ~r~~aa~aL~~l~~~~~ 689 (864)
-|..|+.|++.+.+|..
T Consensus 382 nreaavmAfGSvm~gp~ 398 (858)
T COG5215 382 NREAAVMAFGSVMHGPC 398 (858)
T ss_pred hHHHHHHHhhhhhcCcc
Confidence 67777777776665543
No 89
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.29 E-value=0.00035 Score=75.17 Aligned_cols=248 Identities=16% Similarity=0.090 Sum_probs=178.8
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
.|+.+..+.-..-.+.+..++-+++.+++..+.++++.+..+++.-..+.+.+.--.++.-|.. ...++.=++.|...+
T Consensus 14 ~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~-~~~~~~ER~QALkli 92 (371)
T PF14664_consen 14 HPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDR-DNKNDVEREQALKLI 92 (371)
T ss_pred CchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcc-cCCChHHHHHHHHHH
Confidence 4545555444444555554454555999999999999999988888888887766666777765 233445577899888
Q ss_pred HHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHH
Q 048757 468 ANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVR 547 (864)
Q Consensus 468 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 547 (864)
+.+......... ...+.+..++....+. ++..+..|.++|..++-. +-..+...|++..|++.+-++..++.
T Consensus 93 R~~l~~~~~~~~-~~~~vvralvaiae~~-~D~lr~~cletL~El~l~------~P~lv~~~gG~~~L~~~l~d~~~~~~ 164 (371)
T PF14664_consen 93 RAFLEIKKGPKE-IPRGVVRALVAIAEHE-DDRLRRICLETLCELALL------NPELVAECGGIRVLLRALIDGSFSIS 164 (371)
T ss_pred HHHHHhcCCccc-CCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhh------CHHHHHHcCCHHHHHHHHHhccHhHH
Confidence 887665432222 2456688899998884 578899999999999985 23567788999999999887766788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhc----CCCCH--HHHHHHHHHHHHhccCchhhHHhhhc--CCHHH
Q 048757 548 QEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSC----SSSSQ--GLQERAAGALWGLSLSEANSIAIGRE--GGVAP 619 (864)
Q Consensus 548 ~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~----~~~~~--~v~~~A~~aL~~L~~~~~~~~~i~~~--~~i~~ 619 (864)
+..+.++..+-.++..|..+...--++.++.-..+. ..++. +.-..+..++..+-++...--.+... .+++.
T Consensus 165 ~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lks 244 (371)
T PF14664_consen 165 ESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKS 244 (371)
T ss_pred HHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHH
Confidence 889999999988898888876655566666665542 11233 34556677777666664443333332 58999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 620 LIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 620 Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
|+..|+-+.++++......+..+..
T Consensus 245 Lv~~L~~p~~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 245 LVDSLRLPNPEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHC
Confidence 9999999999999999999988753
No 90
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.00019 Score=79.70 Aligned_cols=356 Identities=13% Similarity=0.022 Sum_probs=216.3
Q ss_pred HHHHHHHccCCH-HHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhC-
Q 048757 312 TLLLSLMESSQQ-EVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIANLSV- 387 (864)
Q Consensus 312 ~~L~~lL~~~~~-~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~L~~- 387 (864)
+.|+.....+.+ .++..+..+||.+|.+-+ |... .-....++-.++.-.+. ++..+|..|..+|.+--.
T Consensus 132 ~~lv~nv~~~~~~~~k~~slealGyice~i~------pevl-~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef 204 (859)
T KOG1241|consen 132 VTLVSNVGEEQASMVKESSLEALGYICEDID------PEVL-EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEF 204 (859)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHccCC------HHHH-HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHH
Confidence 455555544444 488999999999985443 3311 11123345555555443 678899999999998322
Q ss_pred Cc-hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 388 DS-KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 388 ~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
.. ......-..=.++..++.-.+++.+++..|..+|.++.. .+-....|.+ .....-+.-++ +.+++|...+.
T Consensus 205 ~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amk---s~~deValQai 280 (859)
T KOG1241|consen 205 TKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMK---SDNDEVALQAI 280 (859)
T ss_pred HHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc---CCcHHHHHHHH
Confidence 11 111111111123444555577899999999999999864 2222222222 12333334444 67888888888
Q ss_pred HHHHHhcCCCcc-----hHH-----------HH---hcCcHHHHHHHHHcc------CchhHHHHHHHHHHHHhhcCCCC
Q 048757 465 GALANLAADDKC-----SLE-----------VA---RAGGVHALVMLARSF------MFEGVQEQAARALANLVAHGDSN 519 (864)
Q Consensus 465 ~~L~~L~~~~~~-----~~~-----------i~---~~~~i~~Lv~ll~~~------~~~~v~~~a~~aL~~L~~~~~~~ 519 (864)
..=.+++..+-. .+. +. -.+.+|.|+++|... ++....+.|..||.-.+..
T Consensus 281 EFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---- 356 (859)
T KOG1241|consen 281 EFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---- 356 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH----
Confidence 777767653211 000 11 124578888888552 2344566677777777653
Q ss_pred cccchhhhccChHHHHHH----HhcCCCHHHHHHHHHHHHHhcCChh-hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHH
Q 048757 520 SNNAAVGLETGALEALVQ----LTFSKHEGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 520 ~~~~~~~~~~~~i~~L~~----lL~~~~~~v~~~a~~~L~~Ls~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
.+...+++++. -+++++..-|+.|+.+++.+-..++ .+..-...++++.++.++.+ ++-.++..+
T Consensus 357 -------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D---~sl~VkdTa 426 (859)
T KOG1241|consen 357 -------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD---PSLWVKDTA 426 (859)
T ss_pred -------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC---chhhhcchH
Confidence 12244455444 4567888899999999998877643 34444455799999999997 888899999
Q ss_pred HHHHHHhccC-chhh-HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-----ccc-HHHHHh---CCcHHHHHH
Q 048757 595 AGALWGLSLS-EANS-IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFN-----PGN-ALCIVE---GGGVQALIH 663 (864)
Q Consensus 595 ~~aL~~L~~~-~~~~-~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-----~~~-~~~i~~---~g~v~~L~~ 663 (864)
+|+++.++.. ++.+ ........++.++.-|+ +.|.+..+++|++.+|+.. +.+ +..... +..|..|++
T Consensus 427 AwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~ 505 (859)
T KOG1241|consen 427 AWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLK 505 (859)
T ss_pred HHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHh
Confidence 9999998865 3221 12222334444555454 4688999999999999841 111 111111 122334444
Q ss_pred HhcC--CCcHHHHHHHHHHHHHhhcCCcccee
Q 048757 664 LCSS--SLSKMARFMAALALAYIVDGRMEDIA 693 (864)
Q Consensus 664 ll~~--~~~~~~r~~aa~aL~~l~~~~~~~~~ 693 (864)
.... ++....|..|-.||+.+...+++.+.
T Consensus 506 ~tdr~dgnqsNLR~AAYeALmElIk~st~~vy 537 (859)
T KOG1241|consen 506 VTDRADGNQSNLRSAAYEALMELIKNSTDDVY 537 (859)
T ss_pred hccccccchhhHHHHHHHHHHHHHHcCcHHHH
Confidence 4432 34457899999999999999997644
No 91
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=5.9e-05 Score=80.73 Aligned_cols=348 Identities=14% Similarity=0.100 Sum_probs=212.0
Q ss_pred HHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 048757 306 WLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANL 385 (864)
Q Consensus 306 ~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 385 (864)
+.++-+++.+.-+.+.|..+|..|+..|.|++....... ..........+-++-.+.+..++ .++..|-.+
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v--------~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRL 151 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV--------LVYFNEIFDVLCKLSADSDQNVR-GGAELLDRL 151 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc--------ccchHHHHHHHHHHhcCCccccc-cHHHHHHHH
Confidence 444558999999999999999999999999875443221 11123334445555555555554 455566555
Q ss_pred hCCc--hhHHHHHhcCcHHHHHHHH----ccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHH
Q 048757 386 SVDS--KVAKAVSENGGIDILADLA----RSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGV 459 (864)
Q Consensus 386 ~~~~--~~~~~i~~~g~i~~Lv~lL----~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v 459 (864)
..+- +-...+ .++.++.+| ...++.++...+.-|..|-..|+..-.=.-....+-|...|. ++++++
T Consensus 152 ikdIVte~~~tF----sL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~Ls---D~s~eV 224 (675)
T KOG0212|consen 152 IKDIVTESASTF----SLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLS---DSSDEV 224 (675)
T ss_pred HHHhcccccccc----CHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhc---CCcHHH
Confidence 4421 100011 255555555 456899999999998888655432211112224455666664 577888
Q ss_pred HHHHHHHHHHhcCCCcchHHH-HhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHH
Q 048757 460 LERAAGALANLAADDKCSLEV-ARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL 538 (864)
Q Consensus 460 ~~~a~~~L~~L~~~~~~~~~i-~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~l 538 (864)
+..+-.++.+.-..-.+.... --...++.++.-+.++ .+.+|..|+.=+.....-+ ...-...-.|.+..++..
T Consensus 225 r~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi~efV~i~----g~~~l~~~s~il~~iLpc 299 (675)
T KOG0212|consen 225 RTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWIQEFVKIP----GRDLLLYLSGILTAILPC 299 (675)
T ss_pred HHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC-cHHHHHHHHHHHHHHhcCC----CcchhhhhhhhhhhcccC
Confidence 876666555543221111111 2234577888888884 6888888876666666532 122233334566666666
Q ss_pred hcCCCHH-HHHHHHH---HHHHhcCChhhHHHHHHC-CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh
Q 048757 539 TFSKHEG-VRQEAAG---ALWNLSFDDRNREAIAAA-GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR 613 (864)
Q Consensus 539 L~~~~~~-v~~~a~~---~L~~Ls~~~~~~~~i~~~-~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~ 613 (864)
+.+..+. +++.+.. .+..+...+...+. ++. ..++.+.+.+.+ ...+.|..+..-+..+-....+.-....
T Consensus 300 ~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~---~~~~tri~~L~Wi~~l~~~~p~ql~~h~ 375 (675)
T KOG0212|consen 300 LSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSD---DREETRIAVLNWIILLYHKAPGQLLVHN 375 (675)
T ss_pred CCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHhhCcchhhhhc
Confidence 6665543 4444332 23344333333322 232 247788888886 8899999999888888777666666667
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHh---cCCCcHHHHHHHHHHHHHhh
Q 048757 614 EGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLC---SSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 614 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll---~~~~~~~~r~~aa~aL~~l~ 685 (864)
....+.|++-|.+.+.+|...+...+.+++.++... +.++.+..+| ..+ ....+..+...++++.
T Consensus 376 ~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 376 DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFKED-TKLLEVRGNLIIRQLC 443 (675)
T ss_pred cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHhhh-hHHHHhhhhHHHHHHH
Confidence 788899999999999999999999999999976654 3344444444 232 2444555555554443
No 92
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.23 E-value=0.00036 Score=68.22 Aligned_cols=231 Identities=17% Similarity=0.141 Sum_probs=150.6
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHH
Q 048757 400 GIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLE 479 (864)
Q Consensus 400 ~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~ 479 (864)
.+..+.+...+++...+...+.+|+.... ..+++.|+..+.. .+..+-||..|+.+|+++.
T Consensus 37 ~i~~i~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~d-esq~pmvRhEAaealga~~-------- 97 (289)
T KOG0567|consen 37 AIKAITKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLD-ESQEPMVRHEAAEALGAIG-------- 97 (289)
T ss_pred HHHHHHHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcc-cccchHHHHHHHHHHHhhc--------
Confidence 35555665555555566666667776543 3478888888875 3456678888888887764
Q ss_pred HHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc-ccchhh--------hccChHHHHHHHhcCCC-HH-HHH
Q 048757 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNS-NNAAVG--------LETGALEALVQLTFSKH-EG-VRQ 548 (864)
Q Consensus 480 i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~-~~~~~~--------~~~~~i~~L~~lL~~~~-~~-v~~ 548 (864)
.....+.+-+..++ +..++++.+..|+..+-+.+.... .+.... ...+-+..+-..+.+.+ +. -|.
T Consensus 98 --~~~~~~~l~k~~~d-p~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 98 --DPESLEILTKYIKD-PCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred --chhhHHHHHHHhcC-CccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 33445556666644 457778878888888765422111 000000 11223444444433332 22 345
Q ss_pred HHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc--
Q 048757 549 EAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS-- 626 (864)
Q Consensus 549 ~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~-- 626 (864)
.|...|+|+-. ...|..|++-+.. ++.-.|..++.+++ .+...-+++.|.+.|.+
T Consensus 175 ~amF~LRn~g~----------EeaI~al~~~l~~---~SalfrhEvAfVfG----------Ql~s~~ai~~L~k~L~d~~ 231 (289)
T KOG0567|consen 175 RAMFYLRNIGT----------EEAINALIDGLAD---DSALFRHEVAFVFG----------QLQSPAAIPSLIKVLLDET 231 (289)
T ss_pred hhhhHhhccCc----------HHHHHHHHHhccc---chHHHHHHHHHHHh----------hccchhhhHHHHHHHHhhh
Confidence 56666666511 1235555555554 78889999999999 56777789999998865
Q ss_pred CCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 627 AVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 627 ~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
+++.||..|+.||+.++ .+.+++.|.+.+.++. +.++..+..+|.-+..
T Consensus 232 E~pMVRhEaAeALGaIa----------~e~~~~vL~e~~~D~~-~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 232 EHPMVRHEAAEALGAIA----------DEDCVEVLKEYLGDEE-RVVRESCEVALDMLEY 280 (289)
T ss_pred cchHHHHHHHHHHHhhc----------CHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHH
Confidence 56889999999999998 6678999999999885 8899988888865443
No 93
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.22 E-value=6.3e-06 Score=71.24 Aligned_cols=115 Identities=20% Similarity=0.183 Sum_probs=104.7
Q ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHH
Q 048757 572 GVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALC 651 (864)
Q Consensus 572 ~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 651 (864)
.++.|+.-... ..+.+.++....-|.|++-+|.+-..+.+..++...+..|..+++.+.+.+++.|||+|.++.+.+.
T Consensus 17 Ylq~LV~efq~--tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 17 YLQHLVDEFQT--TTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHH--hccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 46677776665 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 652 IVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 652 i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
|.+.+++|..+..+.++. +.+-..|+.++..+.++..
T Consensus 95 I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPP-EITVHSAALFLQLLEFGER 131 (173)
T ss_pred HHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcCccc
Confidence 999999999999998885 7778889999999988876
No 94
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0034 Score=70.60 Aligned_cols=284 Identities=14% Similarity=0.107 Sum_probs=169.7
Q ss_pred HccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHH
Q 048757 318 MESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVS 396 (864)
Q Consensus 318 L~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~ 396 (864)
|++.+.-++--|..+|++++... + .....|.+-++|++.++-++..|+-|...+-. .|+.-+.+
T Consensus 116 L~s~nq~vVglAL~alg~i~s~E-------------m-ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f- 180 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPE-------------M-ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF- 180 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHH-------------H-hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh-
Confidence 45566667777788888876221 1 13456777888899999999998888888655 45443333
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHccc------------CCCCHHHHHHH
Q 048757 397 ENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKW------------SSWNDGVLERA 463 (864)
Q Consensus 397 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~------------~~~~~~v~~~a 463 (864)
++...++|.+.+.-|...++..+..++. +++.-..+.+ .++.++..|++. .-.++-++...
T Consensus 181 ----~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 181 ----VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred ----hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 3444556666666666666666666554 3444444444 555666666541 11355677777
Q ss_pred HHHHHHhcCCCcc-hHHHHhcCcHHHHHHHHHccC-----chhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHH
Q 048757 464 AGALANLAADDKC-SLEVARAGGVHALVMLARSFM-----FEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQ 537 (864)
Q Consensus 464 ~~~L~~L~~~~~~-~~~i~~~~~i~~Lv~ll~~~~-----~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~ 537 (864)
.+.|+-|..++.. .+.+- ..|.+.....+ .-.+...++.++..+-. +...|. -++..|-+
T Consensus 255 LrlLriLGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~I~~----~~~Lrv-----lainiLgk 320 (866)
T KOG1062|consen 255 LRLLRILGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMDIRS----NSGLRV-----LAINILGK 320 (866)
T ss_pred HHHHHHhcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHhccC----CchHHH-----HHHHHHHH
Confidence 7777777766542 22221 12222222211 01233344444444332 222221 24456666
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCH
Q 048757 538 LTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGV 617 (864)
Q Consensus 538 lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i 617 (864)
+|.+++..+|.-|...|..+...++.. +.+ .-..+++.|++ +|..++..|...+..|......+.. +
T Consensus 321 FL~n~d~NirYvaLn~L~r~V~~d~~a--vqr--Hr~tIleCL~D---pD~SIkrralELs~~lvn~~Nv~~m------v 387 (866)
T KOG1062|consen 321 FLLNRDNNIRYVALNMLLRVVQQDPTA--VQR--HRSTILECLKD---PDVSIKRRALELSYALVNESNVRVM------V 387 (866)
T ss_pred HhcCCccceeeeehhhHHhhhcCCcHH--HHH--HHHHHHHHhcC---CcHHHHHHHHHHHHHHhccccHHHH------H
Confidence 676777777777777766655443321 011 12466778887 8999999999999877655544433 4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcC--CcccH
Q 048757 618 APLIALARSAVVDVHETAAGALWNLAF--NPGNA 649 (864)
Q Consensus 618 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~ 649 (864)
+.|+.+|.+.+++.+...+.-+..++. .|+++
T Consensus 388 ~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~ 421 (866)
T KOG1062|consen 388 KELLEFLESSDEDFKADIASKIAELAEKFAPDKR 421 (866)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcch
Confidence 558888988899999998888888876 45544
No 95
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.19 E-value=0.00063 Score=77.25 Aligned_cols=296 Identities=20% Similarity=0.115 Sum_probs=172.7
Q ss_pred HHHHHHc--cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 313 LLLSLME--SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 313 ~L~~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
..++.|+ +.|.+|++.|..+.+.+...-.+. ....-...++.+++-| +++-.+..|++++..++..+-
T Consensus 572 ~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~--------l~~eL~~~L~il~eRl--~nEiTRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 572 CTLQRLKATDSDQEVKERAISCMGQIIANFGDF--------LGNELPRTLPILLERL--GNEITRLTAVKALTLIAMSPL 641 (1233)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh--------hhhhhHHHHHHHHHHH--hchhHHHHHHHHHHHHHhccc
Confidence 3344443 457899999999988864221111 0111123444455544 456778889999999888652
Q ss_pred -hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 391 -VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 391 -~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
.-..-.-..+++.+...++......+...+.++-.|.. .........+. .+..+..++. ..+..+-+.|..+|
T Consensus 642 ~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lis---esdlhvt~~a~~~L 717 (1233)
T KOG1824|consen 642 DIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLIS---ESDLHVTQLAVAFL 717 (1233)
T ss_pred eeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhh---HHHHHHHHHHHHHH
Confidence 11111223457788888877777777777777766643 22222222222 3344445553 24556677888899
Q ss_pred HHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhh---cCCCCcccchhhhccChHHHHHHHhcCCCH
Q 048757 468 ANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVA---HGDSNSNNAAVGLETGALEALVQLTFSKHE 544 (864)
Q Consensus 468 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~---~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 544 (864)
..+.........-.....++.++.+++++ -++-.|..++..+-. ... .+ +-+ +..++.++..+-.
T Consensus 718 ~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~~f~alV~t~-~~-------~l~-y~~l~s~lt~PV~ 785 (1233)
T KOG1824|consen 718 TTLAIIQPSSLLKISNPILDEIIRLLRSP---LLQGGALSALLLFFQALVITK-EP-------DLD-YISLLSLLTAPVY 785 (1233)
T ss_pred HHHHhcccHHHHHHhhhhHHHHHHHhhCc---cccchHHHHHHHHHHHHHhcC-CC-------Ccc-HHHHHHHHcCCcc
Confidence 99888877666556677799999999874 445555544444321 110 11 112 4566666665422
Q ss_pred -----HHHHHHHHHHHH----hcCC--hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh
Q 048757 545 -----GVRQEAAGALWN----LSFD--DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR 613 (864)
Q Consensus 545 -----~v~~~a~~~L~~----Ls~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~ 613 (864)
.+...|...++. |+.. .+.+ .....|+.=+.+ +..+..++..|.-.|+.+...... ...
T Consensus 786 ~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~------s~a~kl~~~~~s-~~s~~~ikvfa~LslGElgr~~~~---s~~ 855 (1233)
T KOG1824|consen 786 EQVTDGLHKQAYYSIAKCVAALTCACPQKSK------SLATKLIQDLQS-PKSSDSIKVFALLSLGELGRRKDL---SPQ 855 (1233)
T ss_pred cccccchhHHHHHHHHHHHHHHHHhccccch------hHHHHHHHHHhC-CCCchhHHHHHHhhhhhhccCCCC---Ccc
Confidence 233333333322 2211 1111 122333333333 245778888898888887765221 223
Q ss_pred cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 614 EGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 614 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
.+....+++.+.+++++|+.+|+.||++++.
T Consensus 856 ~e~~~~iieaf~sp~edvksAAs~ALGsl~v 886 (1233)
T KOG1824|consen 856 NELKDTIIEAFNSPSEDVKSAASYALGSLAV 886 (1233)
T ss_pred hhhHHHHHHHcCCChHHHHHHHHHHhhhhhc
Confidence 3444578899999999999999999999986
No 96
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00046 Score=71.97 Aligned_cols=263 Identities=13% Similarity=0.128 Sum_probs=190.5
Q ss_pred HHhhCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchH--hHHHHHHhCCHHHHHHHhcCCC
Q 048757 294 ISKKNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQ--RAEAILRHGGVRLLLDLARSPP 371 (864)
Q Consensus 294 ~~~~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~--~~~~i~~~~~i~~L~~lL~~~~ 371 (864)
.+..-+.-.+.|+...||+.|+++|.+.+.++-......|..|...|--.-+.++. ...++++.++++.|++-+..-|
T Consensus 110 vlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLd 189 (536)
T KOG2734|consen 110 VLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLD 189 (536)
T ss_pred hhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 34444555557777888999999999999999999999999988665444333332 2467888999999998887655
Q ss_pred HHHHHH------HHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHc--cCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCc
Q 048757 372 EGLQSE------VAKAIANLSV-DSKVAKAVSENGGIDILADLAR--STNRLVAEEVVGGLWNLSV-GEDHKGAIARAGG 441 (864)
Q Consensus 372 ~~~~~~------a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~ 441 (864)
+.++.. +...+-|+.. +++++..+++.|-+.-|+.-+. ..-.....+|..+|.-+-. +.+++..+..-.|
T Consensus 190 Esvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G 269 (536)
T KOG2734|consen 190 ESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG 269 (536)
T ss_pred hcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc
Confidence 555443 5556667666 7888999998877777766443 2445567788888887765 4458888888899
Q ss_pred HHHHHHHHccc--CC---C-CHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 442 IKALVDLIFKW--SS---W-NDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 442 i~~L~~lL~~~--~~---~-~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
+..+++-+.-+ ++ . ..+..++...+|+.+...++++..+....++..+.-+++.. ...+..++++|-+....
T Consensus 270 iD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g 347 (536)
T KOG2734|consen 270 IDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFG 347 (536)
T ss_pred HHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhC
Confidence 99888876422 11 1 24667788889999989999999999999999888888762 45677899999999986
Q ss_pred CCCCcccchhhhccChHHHHHHHhc-CC---------CHHHHHHHHHHHHHhcC
Q 048757 516 GDSNSNNAAVGLETGALEALVQLTF-SK---------HEGVRQEAAGALWNLSF 559 (864)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~L~~lL~-~~---------~~~v~~~a~~~L~~Ls~ 559 (864)
++ ...++..+++..+...++.+.. .+ ..+.-+..+..|+.+-.
T Consensus 348 ~~-gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 348 PE-GTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred CC-chHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 55 4467778888888888877643 22 23345556666665533
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.18 E-value=4.7e-06 Score=70.34 Aligned_cols=88 Identities=28% Similarity=0.335 Sum_probs=75.0
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHH
Q 048757 573 VEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCI 652 (864)
Q Consensus 573 i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i 652 (864)
++.|++.+.. ++++.+|..|+.+|+. +....+++.|+.+++++++.|+..|+.+|+.+.
T Consensus 1 i~~L~~~l~~--~~~~~vr~~a~~~L~~----------~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQN--DPDPQVRAEAARALGE----------LGDPEAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHT--SSSHHHHHHHHHHHHC----------CTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhc--CCCHHHHHHHHHHHHH----------cCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 5788998943 4899999999999993 445567999999999999999999999999985
Q ss_pred HhCCcHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048757 653 VEGGGVQALIHLCSSSLSKMARFMAALALA 682 (864)
Q Consensus 653 ~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~ 682 (864)
...+++.|.+++.++++..+|..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 45689999999988877888999999885
No 98
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00079 Score=67.43 Aligned_cols=297 Identities=14% Similarity=0.063 Sum_probs=195.0
Q ss_pred HHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch---hH--HHHHhcCcHH
Q 048757 328 RAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK---VA--KAVSENGGID 402 (864)
Q Consensus 328 ~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~---~~--~~i~~~g~i~ 402 (864)
-+..+|..|....+.. -...+..|.|-.-|..++..++..++..++-+..+.+ +. ..++..+.++
T Consensus 62 lcVscLERLfkakega----------hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilk 131 (524)
T KOG4413|consen 62 LCVSCLERLFKAKEGA----------HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILK 131 (524)
T ss_pred hHHHHHHHHHhhccch----------hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHH
Confidence 3677777765322210 1123445556666778889999999998888776432 22 2345778899
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHH--HHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHH
Q 048757 403 ILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKAL--VDLIFKWSSWNDGVLERAAGALANLAADDK-CSLE 479 (864)
Q Consensus 403 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L--~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~ 479 (864)
.++..+..++.+|...|...+..++..++.-..+.+......+ ..+-.+ -++-+|..+...+..+...+. ....
T Consensus 132 lildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaak---cndiaRvRVleLIieifSiSpesane 208 (524)
T KOG4413|consen 132 LILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAK---CNDIARVRVLELIIEIFSISPESANE 208 (524)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhh---hhhHHHHHHHHHHHHHHhcCHHHHhH
Confidence 9999999999999999999999999888777777665544433 233222 244566667777777765543 4455
Q ss_pred HHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC--CHHHHHHHHH----H
Q 048757 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK--HEGVRQEAAG----A 553 (864)
Q Consensus 480 i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~----~ 553 (864)
.-..|.+..|..-++...+.-++.+++.....|+. ....++.+.+.|.++.+.+..... +|--+-.+.. .
T Consensus 209 ckkSGLldlLeaElkGteDtLVianciElvteLae----teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 209 CKKSGLLDLLEAELKGTEDTLVIANCIELVTELAE----TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred hhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHH----HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 56677788887777765556778888999999987 567788899999999999887653 3333332333 3
Q ss_pred HHHhcCChhhHHHHHHC--CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCC--HHHHH-HHHccCC
Q 048757 554 LWNLSFDDRNREAIAAA--GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGG--VAPLI-ALARSAV 628 (864)
Q Consensus 554 L~~Ls~~~~~~~~i~~~--~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~--i~~Lv-~lL~~~~ 628 (864)
+.+.+..+-..+.+.+. -+++.-.+++.. .+++.++.|..+++-|..+.+..+.+.+.|. .+.++ +..+...
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEm---nDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqna 361 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEM---NDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNA 361 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhc---CCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccc
Confidence 33333322122222221 234555566665 7899999999999999998888777777654 23333 3333233
Q ss_pred HHHHHHHHHHHHHhcC
Q 048757 629 VDVHETAAGALWNLAF 644 (864)
Q Consensus 629 ~~v~~~a~~aL~~L~~ 644 (864)
..-++.+..+|.+++.
T Consensus 362 hakqeaaihaLaaIag 377 (524)
T KOG4413|consen 362 HAKQEAAIHALAAIAG 377 (524)
T ss_pred cchHHHHHHHHHHhhc
Confidence 3446678888888875
No 99
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.08 E-value=0.0047 Score=66.58 Aligned_cols=305 Identities=14% Similarity=0.104 Sum_probs=197.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhCC
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~L~~~ 388 (864)
.+.+..++-+++.++|..+..++..+..+.+ ..+.+.+.+.--.++.-|.. .+..-+++|.+.++.+..-
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--------~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~ 98 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEE--------SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI 98 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--------HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh
Confidence 4555555555559999999999988774443 34566666765556666654 3456778899999887654
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
++.... ...|.+..++.+.++.++..+..|..+|..++... -+.+.+.||+..|++.+-+ +..++.+..+.++.
T Consensus 99 ~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d---~~~~~~~~l~~~lL 172 (371)
T PF14664_consen 99 KKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALID---GSFSISESLLDTLL 172 (371)
T ss_pred cCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHh---ccHhHHHHHHHHHH
Confidence 322222 24566788999999999999999999999998631 2456799999999999864 44558888899999
Q ss_pred HhcCCCcchHHHHhcCcHHHHHHHHHcc------Cch--hHHHHHHHHHHHHhhcCCCCcccchhhhcc--ChHHHHHHH
Q 048757 469 NLAADDKCSLEVARAGGVHALVMLARSF------MFE--GVQEQAARALANLVAHGDSNSNNAAVGLET--GALEALVQL 538 (864)
Q Consensus 469 ~L~~~~~~~~~i~~~~~i~~Lv~ll~~~------~~~--~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~--~~i~~L~~l 538 (864)
++...+..|..+...-.+..++.-+.+. ++. +....+..++..+-. +|..--.+... .+++.|+..
T Consensus 173 ~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr----sW~GLl~l~~~~~~~lksLv~~ 248 (371)
T PF14664_consen 173 YLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR----SWPGLLYLSMNDFRGLKSLVDS 248 (371)
T ss_pred HHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh----cCCceeeeecCCchHHHHHHHH
Confidence 9988888887776555566665555443 112 234455666666654 34333333222 589999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCh--h------hHHHHHHCCChHHHHHHH----------HhcC-CCCHHHHHHHHHHHH
Q 048757 539 TFSKHEGVRQEAAGALWNLSFDD--R------NREAIAAAGGVEALVALV----------RSCS-SSSQGLQERAAGALW 599 (864)
Q Consensus 539 L~~~~~~v~~~a~~~L~~Ls~~~--~------~~~~i~~~~~i~~Lv~lL----------~~~~-~~~~~v~~~A~~aL~ 599 (864)
|..+++++|......+..+-.-+ . .-......+.+..-.++- .... ....-+....+-.+.
T Consensus 249 L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ 328 (371)
T PF14664_consen 249 LRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLA 328 (371)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHH
Confidence 99999999999999998874321 0 000111111110001111 0000 011112222233333
Q ss_pred HhccCchhhHHhhhcCCHHHHHHHHccC-CHHHHHHHHHHHHHhc
Q 048757 600 GLSLSEANSIAIGREGGVAPLIALARSA-VVDVHETAAGALWNLA 643 (864)
Q Consensus 600 ~L~~~~~~~~~i~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~~L~ 643 (864)
.+.+.|.++.|+++..+. ++.+...|.-.|+.+.
T Consensus 329 ----------ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 329 ----------ILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred ----------HHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 588999999999999876 7888888888888764
No 100
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00043 Score=67.69 Aligned_cols=226 Identities=19% Similarity=0.138 Sum_probs=143.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048757 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARST--NRLVAEEVVGGLWNLSVGEDHKGAIA 437 (864)
Q Consensus 360 i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~i~ 437 (864)
+..+.+...+++...+-..+.+|+. +.+..+++.|+..+.+. .|-|+..|+.+|+.+.. ++
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ----------~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~-~~------ 100 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQ----------MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD-PE------ 100 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhh----------hccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc-hh------
Confidence 4444444444444444455556655 44556677777766543 45566777777777652 11
Q ss_pred hhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-ch----HH--------HHhcCcHHHHHHHHHccCchhH-HH
Q 048757 438 RAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CS----LE--------VARAGGVHALVMLARSFMFEGV-QE 503 (864)
Q Consensus 438 ~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~----~~--------i~~~~~i~~Lv~ll~~~~~~~v-~~ 503 (864)
..+.+-+..+ ++-.+|++.+-.++..+-..+. .+ .. -...+.+..|-..+.+.+.+.. +.
T Consensus 101 ---~~~~l~k~~~---dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 101 ---SLEILTKYIK---DPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred ---hHHHHHHHhc---CCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH
Confidence 2333334442 2444555555555544422111 00 00 0122345666666655443333 44
Q ss_pred HHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhc
Q 048757 504 QAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSC 583 (864)
Q Consensus 504 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~ 583 (864)
.|...|+|+.. ..+|..++.-+..++.-.|.+++.+++.| ....+++.|.+.|.+
T Consensus 175 ~amF~LRn~g~--------------EeaI~al~~~l~~~SalfrhEvAfVfGQl----------~s~~ai~~L~k~L~d- 229 (289)
T KOG0567|consen 175 RAMFYLRNIGT--------------EEAINALIDGLADDSALFRHEVAFVFGQL----------QSPAAIPSLIKVLLD- 229 (289)
T ss_pred hhhhHhhccCc--------------HHHHHHHHHhcccchHHHHHHHHHHHhhc----------cchhhhHHHHHHHHh-
Confidence 56666666653 24678888888888888999999999998 334578999999887
Q ss_pred CCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 584 SSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 584 ~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
....+-+|..|+.||+ .+.+...++.|.+.+.++.+-|++.+..+|--+-
T Consensus 230 ~~E~pMVRhEaAeALG----------aIa~e~~~~vL~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 230 ETEHPMVRHEAAEALG----------AIADEDCVEVLKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred hhcchHHHHHHHHHHH----------hhcCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 3568999999999999 5777888999999999999999998888876554
No 101
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=0.0019 Score=73.85 Aligned_cols=309 Identities=16% Similarity=0.116 Sum_probs=209.8
Q ss_pred HHHHHHHHHHHHhC-CchhHHHHHhc----CcHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHH
Q 048757 374 LQSEVAKAIANLSV-DSKVAKAVSEN----GGIDILADLARS-TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVD 447 (864)
Q Consensus 374 ~~~~a~~~L~~L~~-~~~~~~~i~~~----g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~ 447 (864)
-...++.+|.|+.. +|+....+... |-.+.+..+++. .++.++..|+..+..+..+.+....++..|.+..|+.
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~ 1820 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLT 1820 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHH
Confidence 34568899999765 77766555433 456667776754 5788999999999999999999999999999999999
Q ss_pred HHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhh
Q 048757 448 LIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGL 527 (864)
Q Consensus 448 lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~ 527 (864)
+|. ..+..++.+..+|..|+...+...+-.+.|++..+..++-..+++..|.+++..+..|...+-..+..+..++
T Consensus 1821 lLH----S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1821 LLH----SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHh----cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 995 4568899999999999999987777778899888888887777788899999999999875332332222111
Q ss_pred c---c-------ChHHHHHHHhcC--CCH------HHHHHHHHHHHHhcC--------Ch--------------------
Q 048757 528 E---T-------GALEALVQLTFS--KHE------GVRQEAAGALWNLSF--------DD-------------------- 561 (864)
Q Consensus 528 ~---~-------~~i~~L~~lL~~--~~~------~v~~~a~~~L~~Ls~--------~~-------------------- 561 (864)
. . +..+..++.++. +++ ..+......+..+.. ++
T Consensus 1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence 1 0 112344555543 222 223333333333311 00
Q ss_pred -----hhHHHHHHC------------CChHHHHHHHHhcCCCCHHHHHHHHHHHHHh-ccCchhhHHhhhcCCHHHHHHH
Q 048757 562 -----RNREAIAAA------------GGVEALVALVRSCSSSSQGLQERAAGALWGL-SLSEANSIAIGREGGVAPLIAL 623 (864)
Q Consensus 562 -----~~~~~i~~~------------~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L-~~~~~~~~~i~~~~~i~~Lv~l 623 (864)
-.|..+... +.++.+.+++... ++..+.-..-..++-.| ...+.....+..-|.+|.++..
T Consensus 1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~-~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~A 2055 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRP-TPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTA 2055 (2235)
T ss_pred ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCC-CcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHH
Confidence 013333322 2345555566541 12222222222333333 3458888888999999999999
Q ss_pred HccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 624 ARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 624 L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+...+..+-..|+..|..|+.+.-..+.+....++..++..+... +..--.|+.+|..+.....
T Consensus 2056 m~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~ 2119 (2235)
T KOG1789|consen 2056 MCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNT 2119 (2235)
T ss_pred HHhcCCcCcHHHHHHHHHHhhccHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhH
Confidence 987777777899999999999998889999888888888888654 2344478888887776443
No 102
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=3.3e-06 Score=79.07 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc---CCCCcCEEEEeCCCC
Q 048757 94 RISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE---NLSSVRYLSIAGTRN 168 (864)
Q Consensus 94 ~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~---~~~~L~~L~l~~c~~ 168 (864)
.|..+|+..+- .++.++.|.+.+|..+.|.++..|..-.|+|+.|+|++|+.|||.++. .+++|+.|.+++-+.
T Consensus 112 ~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 112 SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 35555555553 456666666666666666666666555566666666666666665555 555555555554433
No 103
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.03 E-value=0.00026 Score=78.08 Aligned_cols=260 Identities=12% Similarity=0.018 Sum_probs=163.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCC---CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-c
Q 048757 401 IDILADLARSTNRLVAEEVVGGLWNLSVG---EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-C 476 (864)
Q Consensus 401 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~---~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~ 476 (864)
+..++..|++..+.++.+|+..++.++.- ...-..+...|. .|.+.|. ...+++.-...+++..+...-. .
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylg---eeypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLG---EEYPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcC---cccHHHHHHHHHHHHHHHHhcccc
Confidence 33455677899999999999999888651 111223334332 2455554 4677877766666665543321 1
Q ss_pred hHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048757 477 SLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWN 556 (864)
Q Consensus 477 ~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 556 (864)
+..---.+.+|.|..+|++ ..+.++++++..+..++..+.+.-..|..+. +--.|+++|++.+.++|.+|..+++.
T Consensus 876 km~pPi~dllPrltPILkn-rheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKN-RHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred ccCCChhhhcccchHhhhh-hHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 1111124678999999998 4689999999999999987543222333321 22357888889999999999999999
Q ss_pred hcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh----cCCHHHHHHHHccCCHHHH
Q 048757 557 LSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR----EGGVAPLIALARSAVVDVH 632 (864)
Q Consensus 557 Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~----~~~i~~Lv~lL~~~~~~v~ 632 (864)
++.- |.-+.++..|+.-|+. .+...|....-+++ .+.+ ..++|.|++=-+.+...|+
T Consensus 952 Iaka------IGPqdVLatLlnnLkv---qeRq~RvcTtvaIa----------IVaE~c~pFtVLPalmneYrtPe~nVQ 1012 (1172)
T KOG0213|consen 952 IAKA------IGPQDVLATLLNNLKV---QERQNRVCTTVAIA----------IVAETCGPFTVLPALMNEYRTPEANVQ 1012 (1172)
T ss_pred HHHh------cCHHHHHHHHHhcchH---HHHHhchhhhhhhh----------hhhhhcCchhhhHHHHhhccCchhHHH
Confidence 8542 1112223333333332 33333333333333 1222 2356667666677888999
Q ss_pred HHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 633 ETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 633 ~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
..++.+++.|..+......=.-....|.|.+.+-+.+ +.-|.-|+.++..++.|.+
T Consensus 1013 nGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD-~vhRqta~~~I~Hl~Lg~~ 1068 (1172)
T KOG0213|consen 1013 NGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRD-LVHRQTAMNVIKHLALGVP 1068 (1172)
T ss_pred HhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhcccc-HHHHHHHHHHHHHHhcCCC
Confidence 9999999988764332221111245677777887775 7788889999998888755
No 104
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0095 Score=66.92 Aligned_cols=250 Identities=14% Similarity=0.127 Sum_probs=149.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchh
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKV 391 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~ 391 (864)
|..|+...+.+.++++-.-..|...+..+.+.+ .=-|..+-+.|+++++.+|..|+++|..+-.
T Consensus 74 p~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA------------LLSIntfQk~L~DpN~LiRasALRvlSsIRv---- 137 (968)
T KOG1060|consen 74 PAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA------------LLSINTFQKALKDPNQLIRASALRVLSSIRV---- 137 (968)
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce------------eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch----
Confidence 788888888999999888888888776665432 1235556677899999999999998887321
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHh
Q 048757 392 AKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANL 470 (864)
Q Consensus 392 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L 470 (864)
.++..=.+-.+-+...+..+.||..|+-++-+|=. +++.+.++.+ .+-.+|. +.++.|.-.|+.+.-.+
T Consensus 138 --p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e-----~I~~LLa---D~splVvgsAv~AF~ev 207 (968)
T KOG1060|consen 138 --PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEE-----VIKKLLA---DRSPLVVGSAVMAFEEV 207 (968)
T ss_pred --hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHH-----HHHHHhc---CCCCcchhHHHHHHHHh
Confidence 11111111222334567889999999999999844 5555544332 3334554 45667777777777666
Q ss_pred cCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc---------------------ccchhhhcc
Q 048757 471 AADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNS---------------------NNAAVGLET 529 (864)
Q Consensus 471 ~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~---------------------~~~~~~~~~ 529 (864)
|-+. -.++ .+-...|.+++.+-+ +.=|...+..|..-+++.-..+ +.+.-+.-.
T Consensus 208 CPer---ldLI-HknyrklC~ll~dvd-eWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d 282 (968)
T KOG1060|consen 208 CPER---LDLI-HKNYRKLCRLLPDVD-EWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVND 282 (968)
T ss_pred chhH---HHHh-hHHHHHHHhhccchh-hhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccC
Confidence 5321 1111 122344444444422 2224444555544444311011 000111111
Q ss_pred ChHHHHH----HHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 048757 530 GALEALV----QLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLS 602 (864)
Q Consensus 530 ~~i~~L~----~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~ 602 (864)
.-+..|+ .+|.+.++.+..+++.+.+.++-..+. ...+++|+++|.+ ++++|.-.+..+..++
T Consensus 283 ~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs----~~~vqyvvL~nIa~~s 349 (968)
T KOG1060|consen 283 PDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRS----NREVQYVVLQNIATIS 349 (968)
T ss_pred ccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhc----CCcchhhhHHHHHHHH
Confidence 1122233 467788999999999999999765432 2457899999984 6677777777776655
No 105
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.95 E-value=7.1e-06 Score=88.25 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=63.6
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCch--HHHHhCCcccceeeeecCC--CCCHHHHHHHH-----
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSAD--AMIILQARRLREINVEFCR--ELTDAIFSAIV----- 76 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~--~l~~~~~~~L~~L~l~~c~--~l~d~~l~~l~----- 76 (864)
|+--+.|||+++++..-....+ ...|||+++++..+.... .+.. -..+|++|+|.+.. .++.+.+..+.
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f-~nl~nLq~v~l~~N~Lt~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFF-YNLPNLQEVNLNKNELTRIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ccceeeeeccccccccCcHHHH-hcCCcceeeeeccchhhhcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 3333578999887654222222 457888888888874321 1111 34457777766543 23344433320
Q ss_pred ---------------hCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEec
Q 048757 77 ---------------ARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGF 141 (864)
Q Consensus 77 ---------------~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l 141 (864)
...+++++|+| + ...||+-+...+. .+.+|..|.|+.++ +|.--.. .++++|+|+.|+|
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~L--a-~N~It~l~~~~F~-~lnsL~tlkLsrNr-ittLp~r-~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNL--A-SNRITTLETGHFD-SLNSLLTLKLSRNR-ITTLPQR-SFKRLPKLESLDL 228 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEee--c-ccccccccccccc-ccchheeeecccCc-ccccCHH-Hhhhcchhhhhhc
Confidence 11245666666 3 2345544333332 23344555555444 3322111 2334555665555
Q ss_pred cC
Q 048757 142 ID 143 (864)
Q Consensus 142 ~~ 143 (864)
..
T Consensus 229 nr 230 (873)
T KOG4194|consen 229 NR 230 (873)
T ss_pred cc
Confidence 44
No 106
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.95 E-value=1.1e-06 Score=94.23 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=25.3
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCC--CCCHHHhcCCCCcCEEEEeC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSG--GVDEAALENLSSVRYLSIAG 165 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~--~i~~~~~~~~~~L~~L~l~~ 165 (864)
.|.++++|+|+.+. ++.-.-.-+ -++..|+.|++|++. .+.-+++..|++|++|++++
T Consensus 267 ~l~kme~l~L~~N~-l~~vn~g~l-fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 267 GLEKMEHLNLETNR-LQAVNEGWL-FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS 326 (873)
T ss_pred eecccceeecccch-hhhhhcccc-cccchhhhhccchhhhheeecchhhhcccceeEeccc
Confidence 45566666666554 221110011 124455555555431 12233334555555555554
No 107
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=7.2e-06 Score=76.88 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=72.3
Q ss_pred cceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCC
Q 048757 56 LREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQ 135 (864)
Q Consensus 56 L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~ 135 (864)
++.+|-++|. |..+|+..+ ..++.++.|.+ ..|..+.|.++..+..-.|+|+.|+|++|+.||+.++..+.+ +++
T Consensus 103 IeaVDAsds~-I~~eGle~L-~~l~~i~~l~l--~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHL-RDLRSIKSLSL--ANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKN 177 (221)
T ss_pred EEEEecCCch-HHHHHHHHH-hccchhhhhee--ccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhh
Confidence 5677777776 888888877 46888889988 789999999999988888899999999999999999888876 888
Q ss_pred ccEEeccCCCCCC
Q 048757 136 LVEVGFIDSGGVD 148 (864)
Q Consensus 136 L~~L~l~~c~~i~ 148 (864)
|+.|.|.+-..+.
T Consensus 178 Lr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 178 LRRLHLYDLPYVA 190 (221)
T ss_pred hHHHHhcCchhhh
Confidence 8888888755443
No 108
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.94 E-value=2.2e-05 Score=66.18 Aligned_cols=86 Identities=20% Similarity=0.308 Sum_probs=71.9
Q ss_pred HHHHHHHH-ccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc
Q 048757 311 ATLLLSLM-ESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS 389 (864)
Q Consensus 311 v~~L~~lL-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 389 (864)
||.|++.| +++++.+|..++.+|+.+. +...++.|+++++++++.++..|+.+|+.+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i---- 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------------------DPEAIPALIELLKDEDPMVRRAAARALGRI---- 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----
Confidence 57899999 8899999999999999642 235689999999999999999999999994
Q ss_pred hhHHHHHhcCcHHHHHHHHccC-CHHHHHHHHHHHH
Q 048757 390 KVAKAVSENGGIDILADLARST-NRLVAEEVVGGLW 424 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~ 424 (864)
.+...++.|.+++.++ +..++..|+.+|+
T Consensus 59 ------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ------GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4566899999988765 5667899988875
No 109
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.89 E-value=0.0035 Score=71.48 Aligned_cols=362 Identities=15% Similarity=0.089 Sum_probs=207.2
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
.+++.+...++......+.....++..|....... .+.. .-.-++..+..++...+..+...|..+|..+...
T Consensus 651 ~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~--~~~~-----~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 651 EILPELASFLRKNQRALRLATLTALDKLVKNYSDS--IPAE-----LLEAVLVELPPLISESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccHH-----HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 33677777776656666666666666654322111 0111 1122344455566667778888999999998887
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh----cCCCCcHHHHHhhCcHHHHHHHHcccCCC--CHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNL----SVGEDHKGAIARAGGIKALVDLIFKWSSW--NDGVLER 462 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L----s~~~~~~~~i~~~g~i~~L~~lL~~~~~~--~~~v~~~ 462 (864)
+.....-.....++.++.+++++ -++-.|..++.++ ..+.+. +.+ ...+..++...-.+ ...+...
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Sp--llqg~al~~~l~~f~alV~t~~~-----~l~-y~~l~s~lt~PV~~~~~~~l~kq 795 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSP--LLQGGALSALLLFFQALVITKEP-----DLD-YISLLSLLTAPVYEQVTDGLHKQ 795 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCc--cccchHHHHHHHHHHHHHhcCCC-----Ccc-HHHHHHHHcCCcccccccchhHH
Confidence 66555555666788899998764 3444444443332 111100 111 44455555431111 1122233
Q ss_pred H----HHHHHHhcCCCcchHHHHhcCcHHHHHHHHH-ccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHH
Q 048757 463 A----AGALANLAADDKCSLEVARAGGVHALVMLAR-SFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQ 537 (864)
Q Consensus 463 a----~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~-~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~ 537 (864)
| +.+.+.|+.....+ .......|+.-+. ...+..++..|.-.|+.+.++-+..+ ..+....+++
T Consensus 796 a~~siA~cvA~Lt~~~~~~----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~-------~~e~~~~iie 864 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQK----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP-------QNELKDTIIE 864 (1233)
T ss_pred HHHHHHHHHHHHHHhcccc----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc-------chhhHHHHHH
Confidence 3 33333333221100 0011223333333 33456778888888888887643222 2355567889
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHh---ccCchhhHHhhhc
Q 048757 538 LTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGL---SLSEANSIAIGRE 614 (864)
Q Consensus 538 lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L---~~~~~~~~~i~~~ 614 (864)
.+.+++++++.+|..+|++++...- ...+|-+++.+.+ +|.=|.--+..|-.. +.....+.. -.
T Consensus 865 af~sp~edvksAAs~ALGsl~vgnl-------~~yLpfil~qi~s----qpk~QyLLLhSlkevi~~~svd~~~~~--v~ 931 (1233)
T KOG1824|consen 865 AFNSPSEDVKSAASYALGSLAVGNL-------PKYLPFILEQIES----QPKRQYLLLHSLKEVIVSASVDGLKPY--VE 931 (1233)
T ss_pred HcCCChHHHHHHHHHHhhhhhcCch-------HhHHHHHHHHHhc----chHhHHHHHHHHHHHHHHhccchhhhh--HH
Confidence 9999999999999999999976421 1245566666653 333333322222221 111100000 01
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcccee
Q 048757 615 GGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIA 693 (864)
Q Consensus 615 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~ 693 (864)
..|..|.+-.....+..|...+.+|+.|+. +|+ ..+|.|-..+.++. +..|..+..+.......++..+.
T Consensus 932 ~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a-~~~rs~vvsavKfsisd~p~~id 1002 (1233)
T KOG1824|consen 932 KIWALLFKHCECAEEGTRNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEA-SNTRSSVVSAVKFSISDQPQPID 1002 (1233)
T ss_pred HHHHHHHHhcccchhhhHHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCC-cchhhhhhheeeeeecCCCCccC
Confidence 233344444445556778889999999987 444 46788888888885 77899889998888888887666
Q ss_pred eecc--------cccCCCcccchHHHHHHHHHHHH
Q 048757 694 SIGS--------SLEGTSESENLDVIRRMALKHIE 720 (864)
Q Consensus 694 ~~~~--------ll~~~~~~v~~~~~~~~al~~l~ 720 (864)
++.. +++|++-.|+..+. .++.+.+
T Consensus 1003 ~~lk~~ig~fl~~~~dpDl~VrrvaL--vv~nSaa 1035 (1233)
T KOG1824|consen 1003 PLLKQQIGDFLKLLRDPDLEVRRVAL--VVLNSAA 1035 (1233)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHH--HHHHHHH
Confidence 3222 78899999988876 4444433
No 110
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=0.00099 Score=71.69 Aligned_cols=277 Identities=13% Similarity=0.024 Sum_probs=155.3
Q ss_pred hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-
Q 048757 397 ENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK- 475 (864)
Q Consensus 397 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~- 475 (864)
-.+.+++.+..+.+.+..++..|+..|.|++.--.......-......+.++.. +.+..|+ .++..+-.+..+-.
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa---Dsd~~V~-~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA---DSDQNVR-GGAELLDRLIKDIVT 157 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc---CCccccc-cHHHHHHHHHHHhcc
Confidence 356789999999999999999999999999752111111111112333444443 2333333 44555544433211
Q ss_pred -chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHH
Q 048757 476 -CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGAL 554 (864)
Q Consensus 476 -~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 554 (864)
....+--.+.||.|-+.+.. .++..|...+.=+..|-..+ .....-.-....+.|+.+|.++++++|..+-.++
T Consensus 158 e~~~tFsL~~~ipLL~eriy~-~n~~tR~flv~Wl~~Lds~P----~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l 232 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERIYV-INPMTRQFLVSWLYVLDSVP----DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLL 232 (675)
T ss_pred ccccccCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhcCC----cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 11122223344555444444 36788888888888887643 3333333346778899999999999997665555
Q ss_pred HHh----cCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHH
Q 048757 555 WNL----SFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVD 630 (864)
Q Consensus 555 ~~L----s~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 630 (864)
.++ ...|..- --...++.++.-+.+ +++.++..|..-+..+..-+...-...-.|.+..++.++.+..+.
T Consensus 233 ~~fL~eI~s~P~s~---d~~~~i~vlv~~l~s---s~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~ 306 (675)
T KOG0212|consen 233 SEFLAEIRSSPSSM---DYDDMINVLVPHLQS---SEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEM 306 (675)
T ss_pred HHHHHHHhcCcccc---CcccchhhccccccC---CcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccc
Confidence 443 3333221 112356777777776 889999999777776655433322333455666666777665553
Q ss_pred -HHHHHH---HHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 631 -VHETAA---GALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 631 -v~~~a~---~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
.++.+. +.|..+...+.....+---..++.|...+.++. .++|..+..=+..+....+
T Consensus 307 ~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~-~~tri~~L~Wi~~l~~~~p 368 (675)
T KOG0212|consen 307 SIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDR-EETRIAVLNWIILLYHKAP 368 (675)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHhhCc
Confidence 333322 233344333322222222234677778887765 7777766544444443333
No 111
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.85 E-value=0.012 Score=63.56 Aligned_cols=419 Identities=15% Similarity=0.103 Sum_probs=190.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCH-HHHHHHHHHHHHHhCCchh
Q 048757 313 LLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPE-GLQSEVAKAIANLSVDSKV 391 (864)
Q Consensus 313 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~-~~~~~a~~~L~~L~~~~~~ 391 (864)
.+.++.++.|+.+|...-.++..|+...++- + =+...++.=+..+.+ .++-.|.+.|..
T Consensus 69 ~i~KlFQhkd~~Lrq~VY~aIkelS~~tedv----------l---m~tssiMkD~~~g~~~~~kp~AiRsL~~------- 128 (898)
T COG5240 69 AILKLFQHKDLYLRQCVYSAIKELSKLTEDV----------L---MGTSSIMKDLNGGVPDDVKPMAIRSLFS------- 128 (898)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhhcchhh----------h---HHHHHHHHhhccCCccccccHHHHHHHH-------
Confidence 4667778999999888888888876544321 1 123344554555444 677778888877
Q ss_pred HHHHHhcCcHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCCc-HHHHHhhCcHHHHHHHHc---c------cCCCCH
Q 048757 392 AKAVSENGGIDILADLAR----STNRLVAEEVVGGLWNLSVGEDH-KGAIARAGGIKALVDLIF---K------WSSWND 457 (864)
Q Consensus 392 ~~~i~~~g~i~~Lv~lL~----~~~~~v~~~a~~aL~~Ls~~~~~-~~~i~~~g~i~~L~~lL~---~------~~~~~~ 457 (864)
+.+...++..-++|+ +..+.++..|+..=.+|--...+ -..+.+ ..-.++.++-. . .+.+++
T Consensus 129 ---Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~n-e~qeav~~l~q~p~~~~n~gy~Pn~~~ 204 (898)
T COG5240 129 ---VIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLN-ETQEAVLDLKQFPNQHGNEGYEPNGNP 204 (898)
T ss_pred ---hcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHH-HHHHHHhhHhhCcCccCCcccCCCCCh
Confidence 444444444444443 33445555554443343211111 111110 01112222111 1 133455
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchh---HHHHHHHHHHHHhhcCCCCcccchhhhccChHHH
Q 048757 458 GVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEG---VQEQAARALANLVAHGDSNSNNAAVGLETGALEA 534 (864)
Q Consensus 458 ~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~---v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~ 534 (864)
--+.+|.+.|..+-+.+.. +.-.+++.+....... ......++...+-.. ++..+.. ..|.
T Consensus 205 isqYHalGlLyq~kr~dkm--------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~---n~q~~~q-----~rpf 268 (898)
T COG5240 205 ISQYHALGLLYQSKRTDKM--------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE---NSQALLQ-----LRPF 268 (898)
T ss_pred HHHHHHHHHHHHHhcccHH--------HHHHHHHHhhcccccccchhheehHHHHHHHHHh---ChHHHHH-----HHHH
Confidence 5677888877776443321 1112333333311000 000111222222221 1111111 1233
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-c--------
Q 048757 535 LVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-E-------- 605 (864)
Q Consensus 535 L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~-------- 605 (864)
|-..+.+.-+.+..++++++..++...-.-+ ..+ ..+..|-.+|.+ +....|..|.++|..++.. |
T Consensus 269 L~~wls~k~emV~lE~Ar~v~~~~~~nv~~~-~~~-~~vs~L~~fL~s---~rv~~rFsA~Riln~lam~~P~kv~vcN~ 343 (898)
T COG5240 269 LNSWLSDKFEMVFLEAARAVCALSEENVGSQ-FVD-QTVSSLRTFLKS---TRVVLRFSAMRILNQLAMKYPQKVSVCNK 343 (898)
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHHhccCHH-HHH-HHHHHHHHHHhc---chHHHHHHHHHHHHHHHhhCCceeeecCh
Confidence 3344444445566667766666544321111 111 134555556654 5666677777777776532 1
Q ss_pred hhhHHh---------------hh---cCCHHHHHHHH----ccCCHHHHHHHHHHHHHhcC-CcccHH--------HHHh
Q 048757 606 ANSIAI---------------GR---EGGVAPLIALA----RSAVVDVHETAAGALWNLAF-NPGNAL--------CIVE 654 (864)
Q Consensus 606 ~~~~~i---------------~~---~~~i~~Lv~lL----~~~~~~v~~~a~~aL~~L~~-~~~~~~--------~i~~ 654 (864)
+.-..+ .+ ..-+..|+++. ++-+..-+.-++.++..|+. .|.-+. .+.+
T Consensus 344 evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~ 423 (898)
T COG5240 344 EVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQ 423 (898)
T ss_pred hHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 111111 11 11222233222 22233333345566666655 232221 2334
Q ss_pred CCc-------HHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceeeecccccCCCcccchHHHHHHHHHHH---Hhhc-
Q 048757 655 GGG-------VQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIASIGSSLEGTSESENLDVIRRMALKHI---EDFC- 723 (864)
Q Consensus 655 ~g~-------v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~~~~al~~l---~~~~- 723 (864)
+|| |+.+.+.+.. .|..+..|...|+.+.++..= .. .+++-| |+.+
T Consensus 424 eGg~eFK~~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey------------------~~---I~vrIL~iLG~EgP 480 (898)
T COG5240 424 EGGLEFKKYMVDAISDAMEN--DPDSKERALEVLCTFIEDCEY------------------HQ---ITVRILGILGREGP 480 (898)
T ss_pred cccchHHHHHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcch------------------hH---HHHHHHHHhcccCC
Confidence 555 3444444433 245566666666655555440 00 112222 2222
Q ss_pred ----ccccchhhhhHHHHhccChhhHHHHhhccchhHHhccccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHH
Q 048757 724 ----AGRIALKHIEDFVRSFSDPQAFATALASAVPKSLAQITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAV 799 (864)
Q Consensus 724 ----~g~~~~~~i~~l~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~ 799 (864)
+|..+......++. ....++.+|. .|+-.|+-..... ......+..|.+.+.+.|.++|..|++
T Consensus 481 ~a~~P~~yvrhIyNR~iL--EN~ivRsaAv--~aLskf~ln~~d~--------~~~~sv~~~lkRclnD~DdeVRdrAsf 548 (898)
T COG5240 481 RAKTPGKYVRHIYNRLIL--ENNIVRSAAV--QALSKFALNISDV--------VSPQSVENALKRCLNDQDDEVRDRASF 548 (898)
T ss_pred CCCCcchHHHHHHHHHHH--hhhHHHHHHH--HHHHHhccCcccc--------ccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 12111111222221 2334566665 4443443222221 222336678999999999999999999
Q ss_pred HHHhhccCCCcc
Q 048757 800 ALLQFTMPGGQH 811 (864)
Q Consensus 800 al~~~~~~~~~~ 811 (864)
+|.++...+...
T Consensus 549 ~l~~~~~~da~~ 560 (898)
T COG5240 549 LLRNMRLSDACE 560 (898)
T ss_pred HHHhhhhhhhhh
Confidence 997776544433
No 112
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.83 E-value=5.7e-06 Score=78.53 Aligned_cols=128 Identities=24% Similarity=0.319 Sum_probs=38.5
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHh
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
++.++++|+|+++. ++. +..+...+.+|+.|++ ++|. |+. +..+ ..+++|++|+++++. +++-. ..+..
T Consensus 17 n~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~L--s~N~-I~~--l~~l-~~L~~L~~L~L~~N~-I~~i~-~~l~~ 85 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-IST--IENLGATLDKLEVLDL--SNNQ-ITK--LEGL-PGLPRLKTLDLSNNR-ISSIS-EGLDK 85 (175)
T ss_dssp ----------------------S--TT-TT--EEE---TTS---S----TT-----TT--EEE--SS----S-C-HHHHH
T ss_pred cccccccccccccc-ccc--ccchhhhhcCCCEEEC--CCCC-Ccc--ccCc-cChhhhhhcccCCCC-CCccc-cchHH
Confidence 44456666666655 322 2333334566777777 5442 332 2222 236777777777766 54321 12334
Q ss_pred cCCCccEEeccCCCCCCH----HHhcCCCCcCEEEEeCCCCCCHH-HHHHHHhcCCCCcEEecCC
Q 048757 132 QCRQLVEVGFIDSGGVDE----AALENLSSVRYLSIAGTRNLNWS-SAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~----~~~~~~~~L~~L~l~~c~~~~~~-~l~~l~~~~~~L~~L~l~~ 191 (864)
.||+|++|+++++. |.+ ..+..|++|+.|++.+++--... .-.++...+|+|+.||-..
T Consensus 86 ~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 86 NLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred hCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 57777777777643 333 22336777777777765432211 1233445677777776655
No 113
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.80 E-value=8.3e-06 Score=77.40 Aligned_cols=106 Identities=25% Similarity=0.274 Sum_probs=22.9
Q ss_pred CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEe
Q 048757 109 KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLD 188 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~ 188 (864)
++++|++.|+. |+. ++.+...+.+|+.|++++|.--+-.++..+++|+.|++++. .+++-. ..+...||+|+.|+
T Consensus 20 ~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-C-HHHHHH-TT--EEE
T ss_pred ccccccccccc-ccc--ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCC-CCCccc-cchHHhCCcCCEEE
Confidence 44555555544 322 23333334455555555543222233334555555555443 222210 11222355555555
Q ss_pred cCCCCCC-HHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 189 TSRTNIN-LSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 189 l~~~~~~-~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
+++..+. ...+ ..+..+|+|++|++.++|..
T Consensus 95 L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCC-GGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHh-HHHHcCCCcceeeccCCccc
Confidence 5551111 0111 22333455555555555544
No 114
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.79 E-value=0.011 Score=63.92 Aligned_cols=315 Identities=14% Similarity=0.030 Sum_probs=187.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCc----HHHHHHHHccC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048757 363 LLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGG----IDILADLARST-NRLVAEEVVGGLWNLSVGEDHKGAIA 437 (864)
Q Consensus 363 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~----i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~ 437 (864)
.++.|+++.+..-..|+..++.++.-+ + -.+. ...+++...++ ....+..++.++++.+....-...+.
T Consensus 99 al~aL~s~epr~~~~Aaql~aaIA~~E-----l-p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~ 172 (858)
T COG5215 99 ALRALKSPEPRFCTMAAQLLAAIARME-----L-PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQ 172 (858)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhh-----C-ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHH
Confidence 466788999999999999999877632 1 1222 33344433333 45588889999999988655444444
Q ss_pred hhCcH--HHHHHHHcccCCCCHHHHHHHHHHHHH-hcCCCcchHHHHhcC-cHHHHHHHHHccCchhHHHHHHHHHHHHh
Q 048757 438 RAGGI--KALVDLIFKWSSWNDGVLERAAGALAN-LAADDKCSLEVARAG-GVHALVMLARSFMFEGVQEQAARALANLV 513 (864)
Q Consensus 438 ~~g~i--~~L~~lL~~~~~~~~~v~~~a~~~L~~-L~~~~~~~~~i~~~~-~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~ 513 (864)
..+.+ .....-++. ..+..+|..|..+|.+ +-....+-..=.+.+ .+....+.-+. ++.+++..|..+|..+.
T Consensus 173 ~sN~il~aiv~ga~k~--et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~-~d~e~q~aafgCl~kim 249 (858)
T COG5215 173 MSNVILFAIVMGALKN--ETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQG-NDEELQHAAFGCLNKIM 249 (858)
T ss_pred HhhHHHHHHHHhhccc--CchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccC-CcHHHHHHHHHHHHHHH
Confidence 33332 223333432 4566788889998887 321111000000111 12333344444 56899999999998886
Q ss_pred hcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChh-hHHHHH----------------HCCChHHH
Q 048757 514 AHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDR-NREAIA----------------AAGGVEAL 576 (864)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~-~~~~i~----------------~~~~i~~L 576 (864)
.- +-..-+...+.-......+.+++++.++...|++.-..++..+- ....+. -...+|.|
T Consensus 250 ~L---yY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 250 ML---YYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 52 11122233343444555677889999998888876656655321 111111 12368999
Q ss_pred HHHHHhcC----CCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc-cHHH
Q 048757 577 VALVRSCS----SSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG-NALC 651 (864)
Q Consensus 577 v~lL~~~~----~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~~~~ 651 (864)
+++|.... .++..+...|..+|--+++.... .+.+. ++..+-.-+++++-.-++.|+-+++.....|. .+..
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd--~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT 403 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD--KIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLT 403 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh--HhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHH
Confidence 99997621 13455666777777654432111 12221 23333334567778889999999999987543 3333
Q ss_pred HHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcccee
Q 048757 652 IVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIA 693 (864)
Q Consensus 652 i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~ 693 (864)
-.-..++|.+..+..++. --++..+||+++.+++.-++.+.
T Consensus 404 ~~V~qalp~i~n~m~D~~-l~vk~ttAwc~g~iad~va~~i~ 444 (858)
T COG5215 404 KIVPQALPGIENEMSDSC-LWVKSTTAWCFGAIADHVAMIIS 444 (858)
T ss_pred hhHHhhhHHHHHhcccce-eehhhHHHHHHHHHHHHHHHhcC
Confidence 334578888888887654 56888899999999987665443
No 115
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.78 E-value=4.1e-05 Score=53.57 Aligned_cols=41 Identities=34% Similarity=0.408 Sum_probs=38.2
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV 428 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 428 (864)
+++++..+++.|++|+|+++|++.++.+++.|+++|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46789999999999999999999999999999999999863
No 116
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.00059 Score=78.25 Aligned_cols=228 Identities=17% Similarity=0.046 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHhcCC-CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHH
Q 048757 458 GVLERAAGALANLAAD-DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALV 536 (864)
Q Consensus 458 ~v~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~ 536 (864)
..|..|+..|+..-.- +.....-..-|..|..+++|++. -.+++-.-+-....+-.. .+..+..+++.++-...+
T Consensus 485 vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~-a~ELrpiLVFIWAKILAv---D~SCQ~dLvKe~g~~YF~ 560 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS-ARELRPILVFIWAKILAV---DPSCQADLVKENGYKYFL 560 (1387)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc-hHhhhhhHHHHHHHHHhc---CchhHHHHHhccCceeEE
Confidence 3344555555544322 22333445678999999999995 477777777666666654 456667778888878888
Q ss_pred HHhcC-C--CHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHh
Q 048757 537 QLTFS-K--HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAI 611 (864)
Q Consensus 537 ~lL~~-~--~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i 611 (864)
+.|.. + +++-|.-|+.+|+.+..+ ...++...+.+.+..-++.|.+ .+.+-++...+-+|+.|=.+ +..|-.=
T Consensus 561 ~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd--~~~pLLrQW~~icLG~LW~d~~~Arw~G 638 (1387)
T KOG1517|consen 561 QVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLND--DPEPLLRQWLCICLGRLWEDYDEARWSG 638 (1387)
T ss_pred EEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcC--CccHHHHHHHHHHHHHHhhhcchhhhcc
Confidence 88776 2 467888999999999887 5567777888888888888886 23688999999999999888 5565555
Q ss_pred hhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC----cccHHH------------HHhCCcHH----HHHHHhcCCCcH
Q 048757 612 GREGGVAPLIALARSAVVDVHETAAGALWNLAFN----PGNALC------------IVEGGGVQ----ALIHLCSSSLSK 671 (864)
Q Consensus 612 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~----~~~~~~------------i~~~g~v~----~L~~ll~~~~~~ 671 (864)
.+.++.+.|+.+|.++-++||..|+.||+.+..+ .+.+.. +.-+..++ .++.+++++ ++
T Consensus 639 ~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-sp 717 (1387)
T KOG1517|consen 639 RRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SP 717 (1387)
T ss_pred ccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-ch
Confidence 5789999999999999999999999999999763 121111 11222333 677777777 49
Q ss_pred HHHHHHHHHHHHhhcCCccce
Q 048757 672 MARFMAALALAYIVDGRMEDI 692 (864)
Q Consensus 672 ~~r~~aa~aL~~l~~~~~~~~ 692 (864)
.+|...+.+|..++.|....+
T Consensus 718 lvr~ev~v~ls~~~~g~~~~~ 738 (1387)
T KOG1517|consen 718 LVRTEVVVALSHFVVGYVSHL 738 (1387)
T ss_pred HHHHHHHHHHHHHHHhhHHHh
Confidence 999999999999988887543
No 117
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.76 E-value=3.2e-05 Score=54.08 Aligned_cols=40 Identities=48% Similarity=0.549 Sum_probs=37.3
Q ss_pred CchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 604 SEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 604 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
+++++..+.+.|++++|+++|+++++++++.|+++|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999999997
No 118
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.018 Score=64.75 Aligned_cols=382 Identities=15% Similarity=0.099 Sum_probs=209.1
Q ss_pred HHHHHHhcCCCHHHHHHHHH-HHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhh
Q 048757 361 RLLLDLARSPPEGLQSEVAK-AIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARA 439 (864)
Q Consensus 361 ~~L~~lL~~~~~~~~~~a~~-~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~ 439 (864)
.-|.++|.+.....+..|.+ +++-++...+... -.|..|+...+.+.++++.+---|..-+....+-..+
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--- 108 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--- 108 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee---
Confidence 45788898876666666665 4455555544322 2466778788889999888776666666543322221
Q ss_pred CcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCC
Q 048757 440 GGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSN 519 (864)
Q Consensus 440 g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~ 519 (864)
-|..+-+-|. +++..+|..|.++|..+ |..++..=.+-.+-+...+ ..+.||..|+-|+-.|-+-+
T Consensus 109 -SIntfQk~L~---DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D-~s~yVRk~AA~AIpKLYsLd--- 174 (968)
T KOG1060|consen 109 -SINTFQKALK---DPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTD-PSPYVRKTAAHAIPKLYSLD--- 174 (968)
T ss_pred -eHHHHHhhhc---CCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcC-CcHHHHHHHHHhhHHHhcCC---
Confidence 3556666675 58889999998888765 1111111111122223333 46899999999999998742
Q ss_pred cccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048757 520 SNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALW 599 (864)
Q Consensus 520 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~ 599 (864)
++... ..++.+=.+|.+.++.|.-.|+.++-.++-+. -.++ ++-...|.+++.+ -++--|......|-
T Consensus 175 ~e~k~-----qL~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI-HknyrklC~ll~d---vdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 175 PEQKD-----QLEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI-HKNYRKLCRLLPD---VDEWGQVVLINMLT 242 (968)
T ss_pred hhhHH-----HHHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh-hHHHHHHHhhccc---hhhhhHHHHHHHHH
Confidence 22222 23455556788889999999998888876432 1111 2234445555544 33333344444444
Q ss_pred HhccC----chh---------------------hHHhhhcCCHHH----HHHHHccCCHHHHHHHHHHHHHhcCCcccHH
Q 048757 600 GLSLS----EAN---------------------SIAIGREGGVAP----LIALARSAVVDVHETAAGALWNLAFNPGNAL 650 (864)
Q Consensus 600 ~L~~~----~~~---------------------~~~i~~~~~i~~----Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 650 (864)
.-++. +.. +.-+....-+.. .-.+|++.++.|...++.+.+.++...+
T Consensus 243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~--- 319 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ--- 319 (968)
T ss_pred HHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH---
Confidence 33321 100 000011111222 3345678899999999999999985332
Q ss_pred HHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceeeecc--cccCCCcccchHHHHHHHHHHHHhhc-cccc
Q 048757 651 CIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIASIGS--SLEGTSESENLDVIRRMALKHIEDFC-AGRI 727 (864)
Q Consensus 651 ~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~~~~--ll~~~~~~v~~~~~~~~al~~l~~~~-~g~~ 727 (864)
....+++|+++|.+. +.+|......+..+...++..+..-.. ..++.+. .+.+.. -++-|.... ++.
T Consensus 320 ---~~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp-~~vk~l---KleiLs~La~esn- 389 (968)
T KOG1060|consen 320 ---VTKIAKALVRLLRSN--REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDP-TQVKIL---KLEILSNLANESN- 389 (968)
T ss_pred ---HHHHHHHHHHHHhcC--CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCH-HHHHHH---HHHHHHHHhhhcc-
Confidence 224577999999876 457777777777777777754442111 1222222 222221 223333332 221
Q ss_pred chhhhhHHHH---hc-cChhhHHHHhhccchhHHhccccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHh
Q 048757 728 ALKHIEDFVR---SF-SDPQAFATALASAVPKSLAQITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQ 803 (864)
Q Consensus 728 ~~~~i~~l~~---~~-~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~ 803 (864)
|..+++ ++ .+..+..++.++. ++|.-+.. .+ .|...-..-|+.+|++.+..+-..|+..+..
T Consensus 390 ----i~~ILrE~q~YI~s~d~~faa~aV~---AiGrCA~~-----~~--sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~ 455 (968)
T KOG1060|consen 390 ----ISEILRELQTYIKSSDRSFAAAAVK---AIGRCASR-----IG--SVTDTCLNGLVQLLSSHDELVVAEAVVVIKR 455 (968)
T ss_pred ----HHHHHHHHHHHHhcCchhHHHHHHH---HHHHHHHh-----hC--chhhHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 222222 11 1222233333333 33332221 11 1222244678888888888888888777644
Q ss_pred h
Q 048757 804 F 804 (864)
Q Consensus 804 ~ 804 (864)
+
T Consensus 456 L 456 (968)
T KOG1060|consen 456 L 456 (968)
T ss_pred H
Confidence 4
No 119
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0027 Score=71.45 Aligned_cols=390 Identities=17% Similarity=0.112 Sum_probs=227.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
.+.+++.++..|-+.+.-+-..+.+.+...... ..+++..++.=..++++.++..|.+.++.+-.+.-
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~------------a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i 118 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL------------AILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKI 118 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchH------------HHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHH
Confidence 367777788888888888888888877655421 24566667766677899999888888877544321
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHh
Q 048757 391 VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANL 470 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L 470 (864)
..-...+|.+.+++.++.++..++-...++-. .......+.|.++.|-+++. +.++.|..+|+.+|..+
T Consensus 119 ------~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~---D~~p~VVAnAlaaL~eI 187 (734)
T KOG1061|consen 119 ------TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLS---DSNPMVVANALAALSEI 187 (734)
T ss_pred ------HHHHHHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhc---CCCchHHHHHHHHHHHH
Confidence 11236688899999999999999888888743 34455668888999999996 47788999999999999
Q ss_pred cCCCcch-HHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHH
Q 048757 471 AADDKCS-LEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQE 549 (864)
Q Consensus 471 ~~~~~~~-~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 549 (864)
...+... ........+..++..+...+ +.-| +..|-.++..-...+ +. ....+..+...|.+.++.+...
T Consensus 188 ~e~~~~~~~~~l~~~~~~~lL~al~ec~-EW~q---i~IL~~l~~y~p~d~--~e---a~~i~~r~~p~Lqh~n~avvls 258 (734)
T KOG1061|consen 188 HESHPSVNLLELNPQLINKLLEALNECT-EWGQ---IFILDCLAEYVPKDS--RE---AEDICERLTPRLQHANSAVVLS 258 (734)
T ss_pred HHhCCCCCcccccHHHHHHHHHHHHHhh-hhhH---HHHHHHHHhcCCCCc--hh---HHHHHHHhhhhhccCCcceEee
Confidence 8765431 11111222344444444432 2223 334444444311111 11 1134456666677777777777
Q ss_pred HHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-ch----------------------
Q 048757 550 AAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EA---------------------- 606 (864)
Q Consensus 550 a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~---------------------- 606 (864)
+...+.++...-.......-....++|+.++.+ .+ +++..|..=+.-+-.. +.
T Consensus 259 avKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~---~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~e 334 (734)
T KOG1061|consen 259 AVKVILQLVKYLKQVNELLFKKVAPPLVTLLSS---ES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLE 334 (734)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccceeeecc---cc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHH
Confidence 888777776553332222333455666666664 33 5554444333322111 00
Q ss_pred ---hhHHhhhcCCH-HHHHHH---HccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHH
Q 048757 607 ---NSIAIGREGGV-APLIAL---ARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAAL 679 (864)
Q Consensus 607 ---~~~~i~~~~~i-~~Lv~l---L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~ 679 (864)
....+....-+ +.+-++ -..-+.+..+.+++++++++.-.+.. .+.|+.|++++.-..+. +...+..
T Consensus 335 Kleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~y-vvqE~~v 408 (734)
T KOG1061|consen 335 KLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDY-VVQEAIV 408 (734)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccc-eeeehhH
Confidence 00111111111 112222 22345677888999999998633322 67899999999866533 4444666
Q ss_pred HHHHhhcCCccceeeecccccCCCcccchHHHHHHHHHH-HHhhc-ccccchhhhhHHHHhccChh
Q 048757 680 ALAYIVDGRMEDIASIGSSLEGTSESENLDVIRRMALKH-IEDFC-AGRIALKHIEDFVRSFSDPQ 743 (864)
Q Consensus 680 aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~~~~al~~-l~~~~-~g~~~~~~i~~l~~~~~~~~ 743 (864)
.+..+.--.+..+..+.+.++....+++-..| +.|+.. ++.+. .=......++-|++.+.++.
T Consensus 409 vi~dilRkyP~~~~~vv~~l~~~~~sl~epea-k~amiWilg~y~~~i~~a~elL~~f~en~~dE~ 473 (734)
T KOG1061|consen 409 VIRDILRKYPNKYESVVAILCENLDSLQEPEA-KAALIWILGEYAERIENALELLESFLENFKDET 473 (734)
T ss_pred HHHhhhhcCCCchhhhhhhhcccccccCChHH-HHHHHHHHhhhhhccCcHHHHHHHHHhhcccch
Confidence 66666666666555555555555555555555 333332 23332 00112344555566555554
No 120
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.74 E-value=0.004 Score=69.34 Aligned_cols=261 Identities=16% Similarity=0.173 Sum_probs=173.0
Q ss_pred HHHHHhhCCchhHHHHHhhcHHHHHHHH----------ccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCH
Q 048757 291 LMRISKKNPKEFDDFWLRQGATLLLSLM----------ESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGV 360 (864)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~gv~~L~~lL----------~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i 360 (864)
.+++++.++.+...++.++|+..|+++- ..+++++..+|..+|+|+.+.... .+....+.|+.
T Consensus 4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~-------aR~~~~~~~~~ 76 (446)
T PF10165_consen 4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPS-------ARQIFVDLGLA 76 (446)
T ss_pred HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHH-------HHHHHHHcCcH
Confidence 4677889999999999999999998876 235789999999999998877643 45778899999
Q ss_pred HHHHHHhcCC-----CHHHHHHHHHHHHHHhC-CchhHHHHHhc-CcHHHHHHHHcc-----------------CCHHHH
Q 048757 361 RLLLDLARSP-----PEGLQSEVAKAIANLSV-DSKVAKAVSEN-GGIDILADLARS-----------------TNRLVA 416 (864)
Q Consensus 361 ~~L~~lL~~~-----~~~~~~~a~~~L~~L~~-~~~~~~~i~~~-g~i~~Lv~lL~~-----------------~~~~v~ 416 (864)
+.++..|+.. +.++.....+.|.-++. .++.+..+++. +++..++..+.. .+....
T Consensus 77 ~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l 156 (446)
T PF10165_consen 77 EKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEAL 156 (446)
T ss_pred HHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHH
Confidence 9999999876 78899999999988887 56777776665 677777765521 134466
Q ss_pred HHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc------CCCCHHHHHHHHHHHHHhcCCCcc--------hHHH--
Q 048757 417 EEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW------SSWNDGVLERAAGALANLAADDKC--------SLEV-- 480 (864)
Q Consensus 417 ~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~------~~~~~~v~~~a~~~L~~L~~~~~~--------~~~i-- 480 (864)
..+++++.|+.........=.....++.++.++... .........+++.+|.|+-..... ...+
T Consensus 157 ~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~ 236 (446)
T PF10165_consen 157 SEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFP 236 (446)
T ss_pred HHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccC
Confidence 778888889865322111112334566666665543 223346677888888887322110 0001
Q ss_pred --HhcCcHHHHHHHHHcc----Cc---hhHHHHHHHHHHHHhhcCCCCcccchhhh----------------ccChHHHH
Q 048757 481 --ARAGGVHALVMLARSF----MF---EGVQEQAARALANLVAHGDSNSNNAAVGL----------------ETGALEAL 535 (864)
Q Consensus 481 --~~~~~i~~Lv~ll~~~----~~---~~v~~~a~~aL~~L~~~~~~~~~~~~~~~----------------~~~~i~~L 535 (864)
.....+..|+.+|... .. .+...-.+.+|.+++.. +...|+.+. ....-..|
T Consensus 237 ~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~---~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rL 313 (446)
T PF10165_consen 237 EGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARA---AREVRKYLRARLLPPDKDRKKPPEKGDTLRSRL 313 (446)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHh---cHHHHHHHHHHhCCChhhcccCCCCCcchHHHH
Confidence 1122356666666432 11 12333456667777664 223333222 22455678
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCh
Q 048757 536 VQLTFSKHEGVRQEAAGALWNLSFDD 561 (864)
Q Consensus 536 ~~lL~~~~~~v~~~a~~~L~~Ls~~~ 561 (864)
++++.+..+.++..++..|+.||..+
T Consensus 314 lrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 314 LRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 99999988999999999999997554
No 121
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.73 E-value=0.0016 Score=70.58 Aligned_cols=258 Identities=14% Similarity=0.093 Sum_probs=166.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCchh---HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHH-
Q 048757 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKV---AKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGA- 435 (864)
Q Consensus 360 i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~- 435 (864)
+..++.+|++..+.++..|+...+.|+.--.. -+.+...|. .|.+-|...++++.-..+.++..+...-..+..
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 44567788999999999999999987652211 122333333 366677888999999988888887542221110
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcc----hHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHH
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKC----SLEVARAGGVHALVMLARSFMFEGVQEQAARALAN 511 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~----~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~ 511 (864)
---.|.+|.|..+|++ ....+..+....++.++...+. ++.+ ..---|+.+|++. +.+++.+|...+..
T Consensus 684 pPi~~ilP~ltPILrn---kh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~-nKeiRR~A~~tfG~ 756 (975)
T COG5181 684 PPISGILPSLTPILRN---KHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSW-NKEIRRNATETFGC 756 (975)
T ss_pred CchhhccccccHhhhh---hhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHh-hHHHHHhhhhhhhh
Confidence 0134688999999974 6778888999999999877542 3333 2234588888884 68999999999999
Q ss_pred HhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHH
Q 048757 512 LVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQ 591 (864)
Q Consensus 512 L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~ 591 (864)
++.. +--..++..|++-|+.++-..|....-+|.-.+.. .|-...|=.++.+-.+++..+|
T Consensus 757 Is~a----------iGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~---------cgpfsVlP~lm~dY~TPe~nVQ 817 (975)
T COG5181 757 ISRA----------IGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEY---------CGPFSVLPTLMSDYETPEANVQ 817 (975)
T ss_pred HHhh----------cCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhh---------cCchhhHHHHHhcccCchhHHH
Confidence 9863 11224455566666555544444444444433211 2333333344444334778888
Q ss_pred HHHHHHHHHhccC--chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc
Q 048757 592 ERAAGALWGLSLS--EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG 647 (864)
Q Consensus 592 ~~A~~aL~~L~~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 647 (864)
.-.+.+++.+-.- +..+..+ .-..|.|-+.|.+.++.-+..|...+.+|+.+..
T Consensus 818 nGvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 818 NGVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 8888888765532 2222222 1234556677888999999999999999998654
No 122
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.007 Score=66.72 Aligned_cols=312 Identities=14% Similarity=0.078 Sum_probs=190.4
Q ss_pred hCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHH
Q 048757 357 HGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAI 436 (864)
Q Consensus 357 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i 436 (864)
...++.+++-+..+.+.+|.....+|..+....+... .....+.+.+++......-+..+...++.+..+. .-..+
T Consensus 95 ~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~-~i~~~ 170 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGL-GIESL 170 (569)
T ss_pred hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc-HHhhh
Confidence 3456778888889999999999999988765322111 1122556777788777778888888888876543 33345
Q ss_pred HhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc--CchhHHHHHHHHHHHHhh
Q 048757 437 ARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSF--MFEGVQEQAARALANLVA 514 (864)
Q Consensus 437 ~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~--~~~~v~~~a~~aL~~L~~ 514 (864)
.+.+.+..+...+.+ ..+...++.+.-+.-..+..-. ...+...++.+-.++.+. ..+.+|..|..+...+-+
T Consensus 171 ~~~~~l~~l~~ai~d--k~~~~~re~~~~a~~~~~~~Lg---~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~ 245 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIID--KKSALNREAALLAFEAAQGNLG---PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMR 245 (569)
T ss_pred hhhhHHHHHHHHhcc--cchhhcHHHHHHHHHHHHHhcC---CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 566777888887764 2222333322222211111100 112344444444444332 347788887777777665
Q ss_pred cCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHH
Q 048757 515 HGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 515 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
.- +.... ...++.++.-+.......+..++..+..++...+..-...-...+|.+.+.|.+ ..+++|..+
T Consensus 246 ~~--~~~aV-----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D---T~~evr~a~ 315 (569)
T KOG1242|consen 246 CL--SAYAV-----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD---TKPEVRKAG 315 (569)
T ss_pred hc--Ccchh-----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc---CCHHHHHHH
Confidence 31 11111 123344444444445567888999999998876666556667789999999997 899999999
Q ss_pred HHHHHHhccC---chhhH-------Hhhh----------------------cCCHHHHHHHH----ccCCHHHHHHHHHH
Q 048757 595 AGALWGLSLS---EANSI-------AIGR----------------------EGGVAPLIALA----RSAVVDVHETAAGA 638 (864)
Q Consensus 595 ~~aL~~L~~~---~~~~~-------~i~~----------------------~~~i~~Lv~lL----~~~~~~v~~~a~~a 638 (864)
..+|-.++.- ++... .+.+ .-.+..++.+| ...+...++.++.+
T Consensus 316 ~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~I 395 (569)
T KOG1242|consen 316 IETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAII 395 (569)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHH
Confidence 9999988742 21110 0111 11122333333 34566778889999
Q ss_pred HHHhcCCcccH---HHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 639 LWNLAFNPGNA---LCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 639 L~~L~~~~~~~---~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
..|++.-.++. ..+.. ..+|.|-..+.+. .|++|.-++.||+.+..+..
T Consensus 396 idNm~~LveDp~~lapfl~-~Llp~lk~~~~d~-~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 396 IDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDA-VPEVRAVAARALGALLERLG 447 (569)
T ss_pred HHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCC-ChhHHHHHHHHHHHHHHHHH
Confidence 99998733333 22222 3466666677777 59999999999976665433
No 123
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.67 E-value=8.9e-07 Score=95.41 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=104.9
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH-HHHh-CCcccceeeeecCCCCCHHHHHHH---HhCCCCcceEE
Q 048757 12 LDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA-MIIL-QARRLREINVEFCRELTDAIFSAI---VARHEMLEILH 86 (864)
Q Consensus 12 ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-l~~~-~~~~L~~L~l~~c~~l~d~~l~~l---~~~~~~L~~L~ 86 (864)
|||+++++ +++.--.+++.+|+.|.|++++.... +..+ .+..|+.|.+++.. .++..+ ...+.||..++
T Consensus 155 LDLS~NrL--e~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq----RTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 155 LDLSNNRL--EMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ----RTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hccccchh--hhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc----chhhcCCCchhhhhhhhhcc
Confidence 45554433 23333345667778888887754322 2111 44555566666544 222222 23456778888
Q ss_pred eccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCC--HHHhcCCCCcCEEEEe
Q 048757 87 FGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVD--EAALENLSSVRYLSIA 164 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~--~~~~~~~~~L~~L~l~ 164 (864)
+ | |.+++. +......+++|++|++|++. +|.-.+ -...+.+|++|++|.+. ++ ...+..+++|+.|.+.
T Consensus 229 l--S-~N~Lp~--vPecly~l~~LrrLNLS~N~-iteL~~--~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 229 L--S-ENNLPI--VPECLYKLRNLRRLNLSGNK-ITELNM--TEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred c--c-ccCCCc--chHHHhhhhhhheeccCcCc-eeeeec--cHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhc
Confidence 8 4 444432 22233456888899998876 654221 12235678888888743 33 2333355666655553
Q ss_pred CCCCCCHH-----------------------HHHHHHhcCCCCcEEecCCC-CCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 165 GTRNLNWS-----------------------SAAIAWSKLTSLVGLDTSRT-NINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 165 ~c~~~~~~-----------------------~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
+. +++-. .+..-...|+.|+.|.++.+ -++ +...+.-++.|++|++...|++
T Consensus 300 ~N-kL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 300 NN-KLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cC-cccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceee---chhhhhhcCCcceeeccCCcCc
Confidence 32 22211 11111246888888888772 222 2223333488999999988887
Q ss_pred cccc
Q 048757 221 EAEA 224 (864)
Q Consensus 221 ~~~~ 224 (864)
-...
T Consensus 376 VMPP 379 (1255)
T KOG0444|consen 376 VMPP 379 (1255)
T ss_pred cCCC
Confidence 6543
No 124
>PF05536 Neurochondrin: Neurochondrin
Probab=97.66 E-value=0.0048 Score=70.21 Aligned_cols=239 Identities=16% Similarity=0.070 Sum_probs=163.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc----hhHHHHHhcCcHHHHHHHHcc-------CCHHHHHHHHHHHHHhc
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVDS----KVAKAVSENGGIDILADLARS-------TNRLVAEEVVGGLWNLS 427 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~aL~~Ls 427 (864)
.++..+.+|+..+.+-+..++-.+.++.... ..++.+.+.=|.+.|-++|++ +....+.-|+.+|..++
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4567788999988778888888888888843 345567888888899999976 33557888999999999
Q ss_pred CCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHH
Q 048757 428 VGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAAR 507 (864)
Q Consensus 428 ~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~ 507 (864)
.+|+....-.-.+-||.|++.+.+ .++.++...+..+|..++..++.+..+.+.|+++.|.+.+.+. +...+.|..
T Consensus 86 ~~~~~a~~~~~~~~IP~Lle~l~~--~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~E~Al~ 161 (543)
T PF05536_consen 86 RDPELASSPQMVSRIPLLLEILSS--SSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQMEIALN 161 (543)
T ss_pred CChhhhcCHHHHHHHHHHHHHHHc--CCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchHHHHHH
Confidence 977654332223369999999975 2334888899999999998888999999999999999999883 566888999
Q ss_pred HHHHHhhcCCC-CcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhh--HHHHHHCC----ChHHHHHHH
Q 048757 508 ALANLVAHGDS-NSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRN--REAIAAAG----GVEALVALV 580 (864)
Q Consensus 508 aL~~L~~~~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~--~~~i~~~~----~i~~Lv~lL 580 (864)
+|.++....+. ....... .-...++.+...+.......+...+..|..+-...+. ........ ...-+..++
T Consensus 162 lL~~Lls~~~~~~~~~~~~-~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 162 LLLNLLSRLGQKSWAEDSQ-LLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHhcchhhhhhhHH-HHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 99998874220 0000000 0013344555555555555677778888776544321 11111122 234445566
Q ss_pred HhcCCCCHHHHHHHHHHHHHhccC
Q 048757 581 RSCSSSSQGLQERAAGALWGLSLS 604 (864)
Q Consensus 581 ~~~~~~~~~v~~~A~~aL~~L~~~ 604 (864)
.+ ...+.-|..|......|...
T Consensus 241 ~s--r~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 241 QS--RLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred hc--CCCHHHHHHHHHHHHHHHHH
Confidence 65 45677777777777766543
No 125
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00068 Score=74.20 Aligned_cols=220 Identities=17% Similarity=0.096 Sum_probs=147.8
Q ss_pred HHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcC--CCCccc
Q 048757 445 LVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHG--DSNSNN 522 (864)
Q Consensus 445 L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~--~~~~~~ 522 (864)
+..+.. +.+..|+..|+..|..|...-..... .....++++++ +.+.+|..|+..+.-.+... +...+.
T Consensus 203 l~~~~~---~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD-~~e~VR~aAvqlv~v~gn~~p~~~e~e~ 273 (823)
T KOG2259|consen 203 LIYLEH---DQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSD-DYEDVRKAAVQLVSVWGNRCPAPLERES 273 (823)
T ss_pred HHHHhc---CCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcc-hHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence 555553 56778888888888777653332222 24456777777 56889998877777666432 101111
Q ss_pred chhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh-----------------------------------------
Q 048757 523 AAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDD----------------------------------------- 561 (864)
Q Consensus 523 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~----------------------------------------- 561 (864)
-..-....++..+.+.+.+.+-.||..|+++|+.+-.-.
T Consensus 274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~ 353 (823)
T KOG2259|consen 274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEW 353 (823)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccc
Confidence 111122356677778888888888888888877652110
Q ss_pred ----------hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHH
Q 048757 562 ----------RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVD 630 (864)
Q Consensus 562 ----------~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~ 630 (864)
+....|+..|+-..++..+.+ +=.+||.+|+..++.|+.+ +.... ..+..|+++++++.++
T Consensus 354 ~advpsee~d~~~~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 354 NADVPSEEDDEEEESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEV 425 (823)
T ss_pred cccCchhhccccccccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHH
Confidence 112234555666777777776 6679999999999999986 44322 2678899999999999
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcC
Q 048757 631 VHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 631 v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
||..|..+|..++.+-..+ +.-++.+.+.|.+.. +.+|...-..|++.-..
T Consensus 426 VRL~ai~aL~~Is~~l~i~-----eeql~~il~~L~D~s-~dvRe~l~elL~~~~~~ 476 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLAIR-----EEQLRQILESLEDRS-VDVREALRELLKNARVS 476 (823)
T ss_pred HHHHHHHHHHHHHHHheec-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCC
Confidence 9999999999998763333 344567788887764 77888777777654433
No 126
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.62 E-value=2.8e-05 Score=88.46 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=56.8
Q ss_pred CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCC--CCCCHHHhcCCCCcCEEEEeCCCC--CCHH------------
Q 048757 109 KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDS--GGVDEAALENLSSVRYLSIAGTRN--LNWS------------ 172 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c--~~i~~~~~~~~~~L~~L~l~~c~~--~~~~------------ 172 (864)
.|+.|.+.++. ++|..+..+ .+.++|+.|+|+++ ..+.+..+.+++.|+.|++||... +.+.
T Consensus 360 ~Lq~LylanN~-Ltd~c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNH-LTDSCFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCc-ccccchhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhh
Confidence 34444555544 555554433 23555555555554 234444444555555555555321 1111
Q ss_pred ------HHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 173 ------SAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 173 ------~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
.+..+ ..++.|+.+|++..+.+.-.+...... |+|++|+++|...
T Consensus 438 hsN~l~~fPe~-~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 438 HSNQLLSFPEL-AQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred cCCceeechhh-hhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 11122 356778888888766665555544422 6788888887774
No 127
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=7.2e-05 Score=74.16 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=111.9
Q ss_pred EEEecCCCCch---H-HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcC
Q 048757 36 ALWFRGALSAD---A-MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLR 111 (864)
Q Consensus 36 ~L~l~~~~~~~---~-l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~ 111 (864)
-|.+.+|..-+ . .+...|..++++||.+..--.++.+..+.+.+|.|+.|+| + |..++. .+..+.-...+|+
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNl--s-~N~L~s-~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNL--S-CNSLSS-DIKSLPLPLKNLR 124 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeec--c-CCcCCC-ccccCcccccceE
Confidence 44455554221 1 3444888999999988764455677788888999999999 4 665543 2333332356889
Q ss_pred eeeecccCCCcHHHHHHHHhcCCCccEEeccCCC----CCCHHHhc---------------------------CCCCcCE
Q 048757 112 RLWLSGVREVNGDAINALAKQCRQLVEVGFIDSG----GVDEAALE---------------------------NLSSVRY 160 (864)
Q Consensus 112 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~----~i~~~~~~---------------------------~~~~L~~ 160 (864)
.|-+.|.. ++...........|.+++|.++.+. +++|.... .+|++..
T Consensus 125 ~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 125 VLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEcCCC-CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 99998887 7777777777888888888777651 23333322 2344444
Q ss_pred EEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 161 LSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 161 L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
+.+..|+. .+.....-...+|.+..|+++.+.++..+-..-+...+.|..|.+.+.|..+.-.
T Consensus 204 v~v~e~Pl-K~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 204 VFVCEGPL-KTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred eeeecCcc-cchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 44444432 2222222233455555566666555444333445666778888888777666554
No 128
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.024 Score=59.70 Aligned_cols=259 Identities=16% Similarity=0.137 Sum_probs=187.0
Q ss_pred HHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC------C----cHHHHHhhCcHHHHHHH
Q 048757 379 AKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGE------D----HKGAIARAGGIKALVDL 448 (864)
Q Consensus 379 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~------~----~~~~i~~~g~i~~L~~l 448 (864)
..-+.-++..|+.-..+++..+++.|+++|.+.+.++.-.++..|..|+..+ + .-..+++.+.++.|++-
T Consensus 105 IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqn 184 (536)
T KOG2734|consen 105 IQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQN 184 (536)
T ss_pred HHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHH
Confidence 3345557778888888999999999999999999999999999999997622 2 24455678889999998
Q ss_pred HcccCCCCHH---HHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHcc-CchhHHHHHHHHHHHHhhcCCCCcccc
Q 048757 449 IFKWSSWNDG---VLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSF-MFEGVQEQAARALANLVAHGDSNSNNA 523 (864)
Q Consensus 449 L~~~~~~~~~---v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~ 523 (864)
+++......+ -...+...+-|+..-.+ ....+++.|.+..|+.-+... ....-...|...|.-+-.. +.+++
T Consensus 185 veRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~---s~e~~ 261 (536)
T KOG2734|consen 185 VERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN---SDENR 261 (536)
T ss_pred HHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc---Cchhh
Confidence 8763222211 22355667777766543 556667777788777755443 2344566788888888875 45578
Q ss_pred hhhhccChHHHHHHHhc---CC------CHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHH
Q 048757 524 AVGLETGALEALVQLTF---SK------HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 524 ~~~~~~~~i~~L~~lL~---~~------~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
.......++..+++-+. .. ..+..++-...|+.+-..+.++..+....+++...-+++. ....+..|
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~----Kk~sr~Sa 337 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE----KKVSRGSA 337 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH----HHHhhhhH
Confidence 88888889998887653 11 2456777788888888889999999998888888777773 56678889
Q ss_pred HHHHHHhccC---chhhHHhhhcCCHHHHHHHHc-cC---------CHHHHHHHHHHHHHhcC
Q 048757 595 AGALWGLSLS---EANSIAIGREGGVAPLIALAR-SA---------VVDVHETAAGALWNLAF 644 (864)
Q Consensus 595 ~~aL~~L~~~---~~~~~~i~~~~~i~~Lv~lL~-~~---------~~~v~~~a~~aL~~L~~ 644 (864)
.++|-....+ .+++..+++..|+..+..+.- .+ ..+.-+..+..|+.+-.
T Consensus 338 lkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 338 LKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 9999888766 368899999999998887764 21 13444556666655543
No 129
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.12 Score=57.60 Aligned_cols=296 Identities=14% Similarity=0.090 Sum_probs=171.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCC--CHHHHHHHHHHHHHHhC-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSP--PEGLQSEVAKAIANLSV- 387 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~~L~~- 387 (864)
+..+.+=|.+.|+.-..-|..+++++...+. ++.+ ..-|+ ++|.++ .+-++..++-+|..|..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re~---------~ea~--~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~ 178 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSREM---------AEAF--ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRK 178 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHhH---------HHHh--hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhc
Confidence 3445555667788888888999998753221 1111 12233 556554 35577778888888776
Q ss_pred CchhHHHHHhcC-cHHHHHHHHccCCHHHHHHHHHHHHHhcCC-C-CcHHHHHhhCcHHHHHHHHccc----------CC
Q 048757 388 DSKVAKAVSENG-GIDILADLARSTNRLVAEEVVGGLWNLSVG-E-DHKGAIARAGGIKALVDLIFKW----------SS 454 (864)
Q Consensus 388 ~~~~~~~i~~~g-~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~-~~~~~i~~~g~i~~L~~lL~~~----------~~ 454 (864)
+|+ ++..| -.+.++.+|.+.+..+...+...+..|+.. + +.+..+.. ++..|..+.... .-
T Consensus 179 spD----l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~--avs~L~riv~~~~t~~qdYTyy~v 252 (938)
T KOG1077|consen 179 SPD----LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPL--AVSRLSRIVVVVGTSLQDYTYYFV 252 (938)
T ss_pred Ccc----ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHH--HHHHHHHHHhhcccchhhceeecC
Confidence 444 33333 377888888888777777777777777652 2 22222211 233333333221 01
Q ss_pred CCHHHHHHHHHHHHHhcCCCc--chHHHHhcCcHHHHHHHHHcc-CchhHHH-----HHHHHHHHHhhcCCCCcccchhh
Q 048757 455 WNDGVLERAAGALANLAADDK--CSLEVARAGGVHALVMLARSF-MFEGVQE-----QAARALANLVAHGDSNSNNAAVG 526 (864)
Q Consensus 455 ~~~~v~~~a~~~L~~L~~~~~--~~~~i~~~~~i~~Lv~ll~~~-~~~~v~~-----~a~~aL~~L~~~~~~~~~~~~~~ 526 (864)
+.+=++...++.|.+.-..++ .+..+ ......++...+.+ ....++. ..+--..+|+.+-|+.++ .+
T Consensus 253 P~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~---ll 327 (938)
T KOG1077|consen 253 PAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPE---LL 327 (938)
T ss_pred CChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHH---HH
Confidence 233455566666666633222 22222 12233333333321 1122222 223333455555332222 22
Q ss_pred hccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch
Q 048757 527 LETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA 606 (864)
Q Consensus 527 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~ 606 (864)
..++..|-+++.+....+|..|...+..|+......+.+..+ .+.++..|+. ..|..+|+.|+..|+.+|..+.
T Consensus 328 --~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkt--erDvSirrravDLLY~mcD~~N 401 (938)
T KOG1077|consen 328 --SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKT--ERDVSIRRRAVDLLYAMCDVSN 401 (938)
T ss_pred --HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhcc--ccchHHHHHHHHHHHHHhchhh
Confidence 145677888899999999999999999998886666665554 7888888884 4889999999999998886544
Q ss_pred hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 607 NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
.+.. +.-|++.|.+.+..+++..+-=..-|+
T Consensus 402 ak~I------V~elLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 402 AKQI------VAELLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHH------HHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3332 334777777777666665444344443
No 130
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=3e-05 Score=76.76 Aligned_cols=175 Identities=15% Similarity=0.089 Sum_probs=101.2
Q ss_pred CCeecCCCCCCCHH-HHHHHHhcCCCCcEEEecCCCCchH---HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcce
Q 048757 9 WSSLDLRPYKFDTS-AAESLSSRCTNLQALWFRGALSADA---MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEI 84 (864)
Q Consensus 9 w~~ldL~~~~~~~~-~l~~i~~~~~~L~~L~l~~~~~~~~---l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~ 84 (864)
.+.+||..+.+.+. -+-.|..++|.|+.|+++.+..... ++ ....+|+.|.|.+.. ++...........|.++.
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCC-CChhhhhhhhhcchhhhh
Confidence 34455555544432 4555555666666666655543221 22 245566666665543 555555555555666666
Q ss_pred EEeccCCC----CCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc---CCCC
Q 048757 85 LHFGLDVC----DRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE---NLSS 157 (864)
Q Consensus 85 L~l~~~~c----~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~---~~~~ 157 (864)
|++ +.. -++.++..+.+ -|.+++|+..+|...-...+..+++.+|++..+-+..|+--+...-. ..|.
T Consensus 151 lHm--S~N~~rq~n~Dd~c~e~~---s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 151 LHM--SDNSLRQLNLDDNCIEDW---STEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS 225 (418)
T ss_pred hhh--ccchhhhhcccccccccc---chhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence 655 322 11222222221 24555666666653334445566777899999998888644433333 6777
Q ss_pred cCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC
Q 048757 158 VRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 158 L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~ 191 (864)
+-.|+++...-=++.++..+. ++|.|..|.+++
T Consensus 226 ~~~LnL~~~~idswasvD~Ln-~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALN-GFPQLVDLRVSE 258 (418)
T ss_pred chhhhhcccccccHHHHHHHc-CCchhheeeccC
Confidence 788888775444566777774 799999999998
No 131
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.016 Score=64.33 Aligned_cols=311 Identities=11% Similarity=0.085 Sum_probs=185.6
Q ss_pred HHHHHHccCC--HHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-Cc
Q 048757 313 LLLSLMESSQ--QEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DS 389 (864)
Q Consensus 313 ~L~~lL~~~~--~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~ 389 (864)
.+-++|-+++ +-++..|+-+|..|-....+. +...+....++.+|.+.+-.+...+...+--|+. .|
T Consensus 150 DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl----------~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 150 DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL----------VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred hhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc----------cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 3446666554 678888888888887665432 2234567889999998888888888877777777 33
Q ss_pred -hhHHHHHhcCcHHHHHHHHc-------------cCCHHHHHHHHHHHHHhcCCC--CcHHHHHhhCcHHHHHHHHcccC
Q 048757 390 -KVAKAVSENGGIDILADLAR-------------STNRLVAEEVVGGLWNLSVGE--DHKGAIARAGGIKALVDLIFKWS 453 (864)
Q Consensus 390 -~~~~~i~~~g~i~~Lv~lL~-------------~~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~L~~lL~~~~ 453 (864)
+++..+. .++..|.++.. -+.|.++...+++|.++-..+ ..+..+.+ .+..++...++.+
T Consensus 220 ~~yk~~~~--~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 220 ESYKTCLP--LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPP 295 (938)
T ss_pred HHHhhhHH--HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCc
Confidence 3333221 22333333321 146888889999998885433 34444433 3444444444211
Q ss_pred CCCHHHHH-----HHHHHHHHhcCC-CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhh
Q 048757 454 SWNDGVLE-----RAAGALANLAAD-DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGL 527 (864)
Q Consensus 454 ~~~~~v~~-----~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~ 527 (864)
.+..+++ ....-..+++.. ++....+ ..++..|-.++.+ ....+|.-++..++.|++. ......+.
T Consensus 296 -~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~-rE~NiRYLaLEsm~~L~ss----~~s~davK 367 (938)
T KOG1077|consen 296 -KSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSH-RETNIRYLALESMCKLASS----EFSIDAVK 367 (938)
T ss_pred -cccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhc-ccccchhhhHHHHHHHHhc----cchHHHHH
Confidence 1112221 111112223322 2222222 2457778888887 4588999999999999984 33333333
Q ss_pred ccChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--
Q 048757 528 ETGALEALVQLTF-SKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-- 604 (864)
Q Consensus 528 ~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-- 604 (864)
.. .+.++..|+ .+|..+|+.|+..|..++..+..+. .++.|++.|.+ .+..+|+..+.=.+-|+..
T Consensus 368 ~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~------IV~elLqYL~t---Ad~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 368 KH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQ------IVAELLQYLET---ADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HH--HHHHHHHhccccchHHHHHHHHHHHHHhchhhHHH------HHHHHHHHHhh---cchHHHHHHHHHHHHHHHHhc
Confidence 22 567888888 6799999999999999976543332 35667777776 7777887665555444432
Q ss_pred chh-------------hHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCc
Q 048757 605 EAN-------------SIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGG 657 (864)
Q Consensus 605 ~~~-------------~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~ 657 (864)
.+. ...+++.+.|-.+++..- .+++++..|+..+......+...+.+++.||
T Consensus 437 tDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVKvgg 501 (938)
T KOG1077|consen 437 TDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVKVGG 501 (938)
T ss_pred CCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 110 112233344444444432 3577788777777777666666666666555
No 132
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0065 Score=67.78 Aligned_cols=320 Identities=11% Similarity=0.071 Sum_probs=169.3
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHH
Q 048757 316 SLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAV 395 (864)
Q Consensus 316 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 395 (864)
+=|+||++-+|-.....|+.|- + .=.-...+|.+...|.+...-||..|.-++..+....+ .+
T Consensus 106 kDLQHPNEyiRG~TLRFLckLk---E-----------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~---~L 168 (948)
T KOG1058|consen 106 KDLQHPNEYIRGSTLRFLCKLK---E-----------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE---HL 168 (948)
T ss_pred hhccCchHhhcchhhhhhhhcC---c-----------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh---hh
Confidence 3467889999988888888762 1 11125567888888999999999999999998766411 01
Q ss_pred HhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC
Q 048757 396 SENGGIDILADLA-RSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADD 474 (864)
Q Consensus 396 ~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~ 474 (864)
-..+-+.+-..| ...|+..+++|...|...-. +.++.-|...+.+.++-++.++...+..+...+...
T Consensus 169 -~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D~----------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~ 237 (948)
T KOG1058|consen 169 -IPDAPELIESFLLTEQDPSCKRNAFLMLFTTDP----------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN 237 (948)
T ss_pred -cCChHHHHHHHHHhccCchhHHHHHHHHHhcCH----------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC
Confidence 012222233333 45677777777655544321 112222222222222223333333333333333221
Q ss_pred cchHHHHhcCcHHHHHHHHHcc----------------CchhHHHHHHHHHHHHhhcCCCCcccchhhh-----------
Q 048757 475 KCSLEVARAGGVHALVMLARSF----------------MFEGVQEQAARALANLVAHGDSNSNNAAVGL----------- 527 (864)
Q Consensus 475 ~~~~~i~~~~~i~~Lv~ll~~~----------------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~----------- 527 (864)
+. .+...|..+..+|.+. .+|.....|+.++..|.... .+.+.+.+.
T Consensus 238 p~----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~ke--sdnnvklIvldrl~~l~~~~ 311 (948)
T KOG1058|consen 238 PA----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKE--SDNNVKLIVLDRLSELKALH 311 (948)
T ss_pred HH----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhc--cCcchhhhhHHHHHHHhhhh
Confidence 11 0112233344444332 12333333444444333321 111111111
Q ss_pred ---ccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhc--------CCCCHHHHHHHHH
Q 048757 528 ---ETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSC--------SSSSQGLQERAAG 596 (864)
Q Consensus 528 ---~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~--------~~~~~~v~~~A~~ 596 (864)
-.|.+-.++++|.+++-+++..+......|+.+ .-++.++.+|+.. +..+...|..-..
T Consensus 312 ~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvss----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLik 381 (948)
T KOG1058|consen 312 EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIK 381 (948)
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHH
Confidence 113444455666677777777777766666443 3344444444320 1134456778888
Q ss_pred HHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHH
Q 048757 597 ALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMAR 674 (864)
Q Consensus 597 aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r 674 (864)
+++..+.. ++.. +..++.|++.+.+.++......+..+..... .|..|..|++ .|++-+..-.+..+-
T Consensus 382 tih~cav~Fp~~a-----atvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~-----~l~~~~~~irS~ki~ 451 (948)
T KOG1058|consen 382 TIHACAVKFPEVA-----ATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIE-----KLLETFPQIRSSKIC 451 (948)
T ss_pred HHHHHhhcChHHH-----HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHH-----HHHHhhhhhcccccc
Confidence 88887766 5443 3467889999998888776666666666654 5665555543 555444322233455
Q ss_pred HHHHHHHHHhhcCCc
Q 048757 675 FMAALALAYIVDGRM 689 (864)
Q Consensus 675 ~~aa~aL~~l~~~~~ 689 (864)
..|+|.++....+..
T Consensus 452 rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 452 RGALWILGEYCEGLS 466 (948)
T ss_pred hhHHHHHHHHHhhhH
Confidence 678888886665544
No 133
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.58 E-value=0.0073 Score=60.64 Aligned_cols=233 Identities=13% Similarity=0.062 Sum_probs=156.3
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCcHHHHH-hhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHh-c
Q 048757 406 DLARSTNRLVAEEVVGGLWNLSVGEDHKGAIA-RAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVAR-A 483 (864)
Q Consensus 406 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~-~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~-~ 483 (864)
+++..-++-.+..|.++|.++...++.|..+- +...-..+++++++ +-+..+++....-++|-++.++++.+.+-+ .
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n-~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQN-YVGVKQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444566688899999999999988887775 44455678888876 346678999999999999999886644432 2
Q ss_pred CcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC--CCHHHHHHHHHHHHH-----
Q 048757 484 GGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS--KHEGVRQEAAGALWN----- 556 (864)
Q Consensus 484 ~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~----- 556 (864)
..+..|+.+++....+.+..-++..+.|++...+ -......+....+.+..--+++. .|++++...-.+=..
T Consensus 235 dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~p-K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 235 DLINDLIAIVKERAKEKVLRLCCGIVANVLDKSP-KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 3477788888876557778889999999987421 12333444444444444334433 355544322211111
Q ss_pred --hcCC---------------h---------hhHHHHHH--CCChHHHHHHHHhcCCCCHH-HHHHHHHHHHHhccC-ch
Q 048757 557 --LSFD---------------D---------RNREAIAA--AGGVEALVALVRSCSSSSQG-LQERAAGALWGLSLS-EA 606 (864)
Q Consensus 557 --Ls~~---------------~---------~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~-v~~~A~~aL~~L~~~-~~ 606 (864)
++.. | ++...+.+ ...+..|.++++. ..+. ...-|+.-+..+.+. |+
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~---n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQS---NNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhc---CCCCceEeeeHhhHHHHHHhCch
Confidence 1110 0 12333333 2357888888887 3333 445567777777765 88
Q ss_pred hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 607 NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
.+..+.+.|+-+.+++++.+++++|+..|..++..+.
T Consensus 391 ~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 391 INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999988764
No 134
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.56 E-value=0.0017 Score=70.37 Aligned_cols=260 Identities=13% Similarity=0.031 Sum_probs=161.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCC---CcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcch
Q 048757 401 IDILADLARSTNRLVAEEVVGGLWNLSVGE---DHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCS 477 (864)
Q Consensus 401 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~---~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~ 477 (864)
+..++.+|++..|.++..|+...+.|+.-- ..-..+...|. .|.+-|. ...+++.-....++..+......+
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg---e~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG---EDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC---cccHHHHHHHHHHHHHHhhhhccc
Confidence 445677889999999999998888775310 01112222222 2334443 466777766666666654433211
Q ss_pred -HHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048757 478 -LEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWN 556 (864)
Q Consensus 478 -~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 556 (864)
.+---.|.+|.|..+|++ ....++.+....+..+|..+.+.-..|..+. +--.|+.+|++.+.++|.+|..+++.
T Consensus 681 ~mqpPi~~ilP~ltPILrn-kh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~ 756 (975)
T COG5181 681 SMQPPISGILPSLTPILRN-KHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGC 756 (975)
T ss_pred ccCCchhhccccccHhhhh-hhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhh
Confidence 111135779999999998 4688999999999999886432222232221 22357888999999999999999999
Q ss_pred hcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh----cCCHHHHHHHHccCCHHHH
Q 048757 557 LSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR----EGGVAPLIALARSAVVDVH 632 (864)
Q Consensus 557 Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~----~~~i~~Lv~lL~~~~~~v~ 632 (864)
++.- |.-+..+..|+.-|+. .+...|....-+++ .+.+ ..++|.|+.=-..+...|+
T Consensus 757 Is~a------iGPqdvL~~LlnnLkv---qeRq~RvctsvaI~----------iVae~cgpfsVlP~lm~dY~TPe~nVQ 817 (975)
T COG5181 757 ISRA------IGPQDVLDILLNNLKV---QERQQRVCTSVAIS----------IVAEYCGPFSVLPTLMSDYETPEANVQ 817 (975)
T ss_pred HHhh------cCHHHHHHHHHhcchH---HHHHhhhhhhhhhh----------hhHhhcCchhhHHHHHhcccCchhHHH
Confidence 8642 1111223333333332 33333333333333 2233 2345666665666778899
Q ss_pred HHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 633 ETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 633 ~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
..+..+++.+..+..++..=.-....|.|-+.+.+.+ +.-|.-|+-.+..++.+.+
T Consensus 818 nGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD-~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 818 NGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRD-PVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccc-hHHHHHHHHHHHHHhcCCC
Confidence 9999999988865444432222345677777887775 8888889988888888765
No 135
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.00087 Score=71.56 Aligned_cols=296 Identities=13% Similarity=0.099 Sum_probs=188.7
Q ss_pred HHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccC
Q 048757 376 SEVAKAIANLSVD-SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWS 453 (864)
Q Consensus 376 ~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~ 453 (864)
..++.+|..++.+ .-.|.-+.+....++|+++|.+++-.+...+...+.|... -...+..+.+.|.+..++.++.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~--- 483 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM--- 483 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh---
Confidence 3455566666664 3567778888899999999998777777777888888755 5567888999999999999996
Q ss_pred CCCHHHHHHHHHHHHHhcCCCc--chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccC-
Q 048757 454 SWNDGVLERAAGALANLAADDK--CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETG- 530 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~~--~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~- 530 (864)
+.++.++....|+++++..+.. .+-.+...-++..++.+..++ .-.+|.++...|+|++.....++..+....+..
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p 562 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATP 562 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecCh
Confidence 4677999999999999998865 345666777889999999885 588999999999999874333333444433332
Q ss_pred ---hHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhH-HHHHHC-CChHHHHHHHHhcCCC--------CHHHHHHHHHH
Q 048757 531 ---ALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNR-EAIAAA-GGVEALVALVRSCSSS--------SQGLQERAAGA 597 (864)
Q Consensus 531 ---~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~-~~i~~~-~~i~~Lv~lL~~~~~~--------~~~v~~~A~~a 597 (864)
..+.|+..++..+|-.-...+..|.+++..+++. ..+.+. ..+..+.++|..-... +..+-..-...
T Consensus 563 ~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~ 642 (743)
T COG5369 563 RRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYT 642 (743)
T ss_pred HHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcccee
Confidence 3455666677777766666678888777776554 433332 2333333333320000 00000000001
Q ss_pred HHHhccCchhhHHhhhcCCHHHHHH------HHc----cCCHHHHHHHHHHHHHhcCCc---c------cHHHHHhCCcH
Q 048757 598 LWGLSLSEANSIAIGREGGVAPLIA------LAR----SAVVDVHETAAGALWNLAFNP---G------NALCIVEGGGV 658 (864)
Q Consensus 598 L~~L~~~~~~~~~i~~~~~i~~Lv~------lL~----~~~~~v~~~a~~aL~~L~~~~---~------~~~~i~~~g~v 658 (864)
..++..+ .++...++. -.+ +++.+......|...|+.... + .|..+..+.|+
T Consensus 643 ~v~l~e~---------~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~ 713 (743)
T COG5369 643 IVNLSEN---------SDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGI 713 (743)
T ss_pred eeccccc---------ccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccH
Confidence 1111111 122222221 111 133456667777777765421 1 33455666677
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHh
Q 048757 659 QALIHLCSSSLSKMARFMAALALAYI 684 (864)
Q Consensus 659 ~~L~~ll~~~~~~~~r~~aa~aL~~l 684 (864)
.-++..+...+++.+|..+-.||.++
T Consensus 714 ~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 714 REWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 77777676666799999999999876
No 136
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.0044 Score=71.48 Aligned_cols=223 Identities=16% Similarity=0.036 Sum_probs=163.6
Q ss_pred HHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh-cCCCCcHHHHHhhCcHHHHHHHHcccC
Q 048757 376 SEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNL-SVGEDHKGAIARAGGIKALVDLIFKWS 453 (864)
Q Consensus 376 ~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L-s~~~~~~~~i~~~g~i~~L~~lL~~~~ 453 (864)
..|+..|+..-. .+-.-..-...|..|..+++|.++-.+++..-+-+=.++ +.++..|..+++.++-.-.++.|....
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~ 567 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQ 567 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcC
Confidence 345666665443 232233334568899999999998888876655444454 678899999998888777777776423
Q ss_pred CCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChH
Q 048757 454 SWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGAL 532 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i 532 (864)
.-+++.+..|+.+|+.+..+-. .+....+.+.+..-+..+.++..+-++..++-+|..|-.+ .+..|-.-...++.
T Consensus 568 ~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d---~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 568 AIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED---YDEARWSGRRDNAH 644 (1387)
T ss_pred CCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh---cchhhhccccccHH
Confidence 3456889999999999998854 6777778888888888888743577888899999999875 67788888889999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCC-----hhh---HHH--------H-HHCCCh---HHHHHHHHhcCCCCHHHHH
Q 048757 533 EALVQLTFSKHEGVRQEAAGALWNLSFD-----DRN---REA--------I-AAAGGV---EALVALVRSCSSSSQGLQE 592 (864)
Q Consensus 533 ~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-----~~~---~~~--------i-~~~~~i---~~Lv~lL~~~~~~~~~v~~ 592 (864)
+.|+.+|.++-++||.+|+.||..+-.+ ++. ... + ++.-.. -.++.++++ +++-++.
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd---gsplvr~ 721 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD---GSPLVRT 721 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc---cchHHHH
Confidence 9999999999999999999999887553 221 111 1 111112 256666766 8899999
Q ss_pred HHHHHHHHhccC
Q 048757 593 RAAGALWGLSLS 604 (864)
Q Consensus 593 ~A~~aL~~L~~~ 604 (864)
..+.+|..+...
T Consensus 722 ev~v~ls~~~~g 733 (1387)
T KOG1517|consen 722 EVVVALSHFVVG 733 (1387)
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
No 137
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0046 Score=69.69 Aligned_cols=327 Identities=17% Similarity=0.096 Sum_probs=163.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS- 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~- 389 (864)
..++.+.+++.++.+|..++.+..++-..+. +...+.|.++.|-.++.++++.|...|+.+|..+....
T Consensus 123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~----------~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP----------DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHhhcCCh----------hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 6788889999999999999999999864442 45778899999999999999999999999999987732
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALAN 469 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~ 469 (864)
..-........+..++..+..-+..-+-..+..+.+=.-.++ ++.. ..+..+...+. ..+..+...+..++.+
T Consensus 193 ~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~-~ea~---~i~~r~~p~Lq---h~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 193 SVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS-REAE---DICERLTPRLQ---HANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc-hhHH---HHHHHhhhhhc---cCCcceEeehHHHHHH
Confidence 211000111112233333333333333333333333221211 1111 12233333343 2333444455555555
Q ss_pred hcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHH--hcCCCH-HH
Q 048757 470 LAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL--TFSKHE-GV 546 (864)
Q Consensus 470 L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~l--L~~~~~-~v 546 (864)
+...-.......-....++|+.++... ++++..+++=+.-+-.+. + +....-+.. .+..++ -+
T Consensus 266 ~~~~~~~~~~~~~~K~~~pl~tlls~~--~e~qyvaLrNi~lil~~~---p---------~~~~~~~~~Ff~kynDPiYv 331 (734)
T KOG1061|consen 266 LVKYLKQVNELLFKKVAPPLVTLLSSE--SEIQYVALRNINLILQKR---P---------EILKVEIKVFFCKYNDPIYV 331 (734)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccc--chhhHHHHhhHHHHHHhC---h---------HHHHhHhHeeeeecCCchhh
Confidence 543322211222223344555555542 255554443333332221 1 011111111 111222 23
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc
Q 048757 547 RQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS 626 (864)
Q Consensus 547 ~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~ 626 (864)
+..=..++..++......+ .+..+...-. .-+.+....|++++++++...+-. ++.+..|+.+++.
T Consensus 332 K~eKleil~~la~~~nl~q------vl~El~eYat---evD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~ 397 (734)
T KOG1061|consen 332 KLEKLEILIELANDANLAQ------VLAELKEYAT---EVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLET 397 (734)
T ss_pred HHHHHHHHHHHhhHhHHHH------HHHHHHHhhh---hhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhh
Confidence 4444444444432221111 1122222222 256666667777777666542111 5566667777766
Q ss_pred CCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcC
Q 048757 627 AVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 627 ~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
+...+...+...++.+.. .|.+-+ ..++.+..-+.+=+.|..|..-+|.++..+..
T Consensus 398 ~~~yvvqE~~vvi~dilRkyP~~~~-----~vv~~l~~~~~sl~epeak~amiWilg~y~~~ 454 (734)
T KOG1061|consen 398 KVDYVVQEAIVVIRDILRKYPNKYE-----SVVAILCENLDSLQEPEAKAALIWILGEYAER 454 (734)
T ss_pred cccceeeehhHHHHhhhhcCCCchh-----hhhhhhcccccccCChHHHHHHHHHHhhhhhc
Confidence 666666666666666655 333322 22334444444444466666666666655443
No 138
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0034 Score=68.97 Aligned_cols=255 Identities=17% Similarity=0.111 Sum_probs=159.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-C--C----CcHHH
Q 048757 363 LLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-G--E----DHKGA 435 (864)
Q Consensus 363 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~--~----~~~~~ 435 (864)
+..+..+.|..|+..|+..|..|+..-..-+.. ....++++++.+..|+..|+..++-.+. . + .....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~-----Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC-----YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHH-----HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 777778899999999999998877633322222 4457788999999999999888776543 1 1 12222
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHH--
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANL-- 512 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L-- 512 (864)
+.+ .+...+.+.+. +.+-.||..|+..|+.+-..++ .-.+..+. .++.-++... .-.+....-..+-
T Consensus 278 l~D-~aF~~vC~~v~---D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK----Klms~lRRkr--~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 278 LKD-AAFSSVCRAVR---DRSLSVRVEAAKALGEFEQVSEEIIQQTLDK----KLMSRLRRKR--TAHKRPKALYSSGEW 347 (823)
T ss_pred hHH-HHHHHHHHHHh---cCceeeeehHHHHhchHHHhHHHHHHHHHHH----HHhhhhhhhh--hcccchHHHHhcCCc
Confidence 322 25666677775 4667888888888877744332 11111111 1111111100 0000011111111
Q ss_pred hhc----CC----CCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcC
Q 048757 513 VAH----GD----SNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCS 584 (864)
Q Consensus 513 ~~~----~~----~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~ 584 (864)
++. .+ ..++...-++..|+--.++.-|+++-.+||.+|+..++.|+.+.+.- ...+++-|++++.+
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F----A~~aldfLvDMfND-- 421 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF----AVRALDFLVDMFND-- 421 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc----HHHHHHHHHHHhcc--
Confidence 000 00 01122345667788888999898888899999999999998864321 12367889999987
Q ss_pred CCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 585 SSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 585 ~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
+.+.+|..|..+|..++..-. .++.-++.+...|.+.++++|+..-..|++.-.
T Consensus 422 -E~~~VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~ 475 (823)
T KOG2259|consen 422 -EIEVVRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKNARV 475 (823)
T ss_pred -HHHHHHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 889999999999998776522 233356777888888888888877777766543
No 139
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.36 E-value=0.023 Score=61.59 Aligned_cols=298 Identities=17% Similarity=0.112 Sum_probs=162.7
Q ss_pred HHhhCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHH
Q 048757 294 ISKKNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEG 373 (864)
Q Consensus 294 ~~~~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~ 373 (864)
++..|.+....++ |.|-.++++.-+-+..+++..+..++..+-. ++.. ...+..|-.+|+++...
T Consensus 254 ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~-----~~~~-----~~~vs~L~~fL~s~rv~ 318 (898)
T COG5240 254 LLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENVG-----SQFV-----DQTVSSLRTFLKSTRVV 318 (898)
T ss_pred HHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhccC-----HHHH-----HHHHHHHHHHHhcchHH
Confidence 3456665554444 7788888887788999999999887644311 1111 23466777788899999
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc-
Q 048757 374 LQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW- 452 (864)
Q Consensus 374 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~- 452 (864)
.|..|.++|..|+.....+.... -+.+-.+..+.+..+...|...|.+=..+ ++ |..|+.++-++
T Consensus 319 ~rFsA~Riln~lam~~P~kv~vc----N~evEsLIsd~Nr~IstyAITtLLKTGt~-e~---------idrLv~~I~sfv 384 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSVC----NKEVESLISDENRTISTYAITTLLKTGTE-ET---------IDRLVNLIPSFV 384 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeeec----ChhHHHHhhcccccchHHHHHHHHHcCch-hh---------HHHHHHHHHHHH
Confidence 99999999999987322111111 11233445677777777777776654332 22 23333332210
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChH
Q 048757 453 SSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGAL 532 (864)
Q Consensus 453 ~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i 532 (864)
++-++..+.-+..++..|+..-+.+... .+.-|...|.+...-+.+..+..|+..+... .|+.+. .++
T Consensus 385 hD~SD~FKiI~ida~rsLsl~Fp~k~~s----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~---~p~skE-----raL 452 (898)
T COG5240 385 HDMSDGFKIIAIDALRSLSLLFPSKKLS----YLDFLGSSLLQEGGLEFKKYMVDAISDAMEN---DPDSKE-----RAL 452 (898)
T ss_pred HhhccCceEEeHHHHHHHHhhCcHHHHH----HHHHHHHHHHhcccchHHHHHHHHHHHHHhh---CchHHH-----HHH
Confidence 1223333444455555555443322111 1223333333322344555556666555543 222222 234
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHH-HHHhcCCCCHHHHHHHHHHHHHhccCchhhHH
Q 048757 533 EALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVA-LVRSCSSSSQGLQERAAGALWGLSLSEANSIA 610 (864)
Q Consensus 533 ~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~-lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~ 610 (864)
..|..+.++- +..+-++++|.-|... |.... -...+..+.. ++- ++.-+|.+|+.||..++-+... .
T Consensus 453 e~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~---P~~yvrhIyNR~iL----EN~ivRsaAv~aLskf~ln~~d--~ 521 (898)
T COG5240 453 EVLCTFIEDC--EYHQITVRILGILGREGPRAKT---PGKYVRHIYNRLIL----ENNIVRSAAVQALSKFALNISD--V 521 (898)
T ss_pred HHHHHHHhhc--chhHHHHHHHHHhcccCCCCCC---cchHHHHHHHHHHH----hhhHHHHHHHHHHHHhccCccc--c
Confidence 5555555332 2223344445544332 11000 0011222222 333 5788999999999888755221 1
Q ss_pred hhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 611 IGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 611 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
+........|-+++.+.+++||..|..+|.++-
T Consensus 522 ~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 522 VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 233334456778899999999999999999986
No 140
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.46 Score=56.08 Aligned_cols=346 Identities=15% Similarity=0.068 Sum_probs=189.8
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCC-CHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSP-PEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~L~~ 387 (864)
..++.|+..+++.|..+|..|+..++.++..... -....++...+.++.-. ++..--.++-+|+.|+.
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~-----------~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~ 409 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP-----------ELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL 409 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH-----------HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence 3378888889999999999999999999865531 12244556666655443 34444578889999776
Q ss_pred CchhHHHHHhcCcHHHHHHHHcc--------CCHHHHHHHHHHHHHhcC--CCC-cHHHHHhhCcHHHHHHHHcccCCCC
Q 048757 388 DSKVAKAVSENGGIDILADLARS--------TNRLVAEEVVGGLWNLSV--GED-HKGAIARAGGIKALVDLIFKWSSWN 456 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~--------~~~~v~~~a~~aL~~Ls~--~~~-~~~~i~~~g~i~~L~~lL~~~~~~~ 456 (864)
..-...... ...+|.+++.|.- ....||..|+.+.|.++. .+. ... +...=.-..|...+. +..
T Consensus 410 rGlLlps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~~L~s~LL~~AlF---Dre 484 (1133)
T KOG1943|consen 410 RGLLLPSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQSLASALLIVALF---DRE 484 (1133)
T ss_pred cCCcchHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHHHHHHHHHHHHhc---Cch
Confidence 321111000 1235555555532 234589999999998865 221 121 111101111222333 356
Q ss_pred HHHHHHHHHHHHHhcCCCcch----H----------------------HHHh-cCcHHHHHHHHHcc----CchhHHHHH
Q 048757 457 DGVLERAAGALANLAADDKCS----L----------------------EVAR-AGGVHALVMLARSF----MFEGVQEQA 505 (864)
Q Consensus 457 ~~v~~~a~~~L~~L~~~~~~~----~----------------------~i~~-~~~i~~Lv~ll~~~----~~~~v~~~a 505 (864)
...|..|..++-.......+. . .+.+ .|....+++-+-.. =++.+++.+
T Consensus 485 vncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irela 564 (1133)
T KOG1943|consen 485 VNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELA 564 (1133)
T ss_pred hhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHH
Confidence 678888887776654331110 0 1111 12233344333221 147889999
Q ss_pred HHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhh---------HHHHHH-CCChHH
Q 048757 506 ARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRN---------REAIAA-AGGVEA 575 (864)
Q Consensus 506 ~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~---------~~~i~~-~~~i~~ 575 (864)
+++|.+|+... + .....+.+++++....+.+...+....-+.+.+...... ...|.. ...+++
T Consensus 565 a~aL~~Ls~~~---p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~ 637 (1133)
T KOG1943|consen 565 AYALHKLSLTE---P----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPP 637 (1133)
T ss_pred HHHHHHHHHhh---H----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccH
Confidence 99999998742 1 223446778888887777777666544444433222111 111111 012333
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-----Cccc
Q 048757 576 LVALVRSCSSS-SQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-----NPGN 648 (864)
Q Consensus 576 Lv~lL~~~~~~-~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-----~~~~ 648 (864)
+...-.. .+ ..-.+...+..+-.++.+ ......+...+....+.+.+.+++ .++..|.+++..++. ++..
T Consensus 638 ~~~~~~~--rg~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~ 714 (1133)
T KOG1943|consen 638 ICDRYFY--RGQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGE 714 (1133)
T ss_pred HHHHHhc--cchHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchh
Confidence 3322221 11 234455666777777665 455556666666666777775444 889999999999875 2221
Q ss_pred HHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 649 ALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 649 ~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
-. ..+...+.-+.+.....+|.--..+++.+.
T Consensus 715 ~~-----~li~~~ls~~~~~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 715 EA-----PLITRYLSRLTKCSEERIRRGLILALGVLP 746 (1133)
T ss_pred hh-----HHHHHHHHHhcCchHHHHHHHHHHHHccCc
Confidence 11 223444444445434667766666666443
No 141
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.32 E-value=0.0038 Score=61.48 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=46.4
Q ss_pred CCcCEEEEeCCCCCCHHHHHHHH----hcCCCCcEEecCC---CCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 156 SSVRYLSIAGTRNLNWSSAAIAW----SKLTSLVGLDTSR---TNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 156 ~~L~~L~l~~c~~~~~~~l~~l~----~~~~~L~~L~l~~---~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
.+|+.+.+... .|...++..+. ..|.+|+.||+.. |-.+-..+...+...+.|+.|.+.+|-.-+.+.
T Consensus 185 ~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~ 259 (388)
T COG5238 185 ENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGV 259 (388)
T ss_pred cCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccH
Confidence 56666666553 35555443332 4678888888877 444556677777777888999999998877776
No 142
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.30 E-value=0.00011 Score=85.90 Aligned_cols=17 Identities=12% Similarity=0.020 Sum_probs=9.5
Q ss_pred hcCCCCCcEEEccCCCC
Q 048757 203 LSSSRNLKVLIALNCPV 219 (864)
Q Consensus 203 ~~~~~~L~~L~~~~c~~ 219 (864)
+..+++|+.|++.+++.
T Consensus 441 l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 441 LIHLSSETTVNLEGNPL 457 (788)
T ss_pred HhhccCCCeEECCCCCC
Confidence 33445666666666553
No 143
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.29 E-value=0.032 Score=62.22 Aligned_cols=235 Identities=17% Similarity=0.153 Sum_probs=153.3
Q ss_pred cCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcC-CCCcHHHHHh-h
Q 048757 368 RSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARST-----NRLVAEEVVGGLWNLSV-GEDHKGAIAR-A 439 (864)
Q Consensus 368 ~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~-~~~~~~~i~~-~ 439 (864)
...++.+..+|+++|.|+.. ++..|..+.+.|..+.+++.|+.. +.++.....++|.-++. .++.+..+++ .
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~ 121 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEH 121 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHh
Confidence 34678899999999999766 789999999999999999999765 78888999999988865 5667766664 4
Q ss_pred CcHHHHHHHHcccC--------------CCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc--------C
Q 048757 440 GGIKALVDLIFKWS--------------SWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSF--------M 497 (864)
Q Consensus 440 g~i~~L~~lL~~~~--------------~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~--------~ 497 (864)
+++..++..+..+- ..+......+..++.|+.........-.....++.++.++... +
T Consensus 122 ~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~ 201 (446)
T PF10165_consen 122 HGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPP 201 (446)
T ss_pred hhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCc
Confidence 78888877765410 1244566788889999977654322212234455565555432 1
Q ss_pred chhHHHHHHHHHHHHhhcC-------C-CCcccchhhhccChHHHHHHHhcCC--------CHHHHHHHHHHHHHhcCC-
Q 048757 498 FEGVQEQAARALANLVAHG-------D-SNSNNAAVGLETGALEALVQLTFSK--------HEGVRQEAAGALWNLSFD- 560 (864)
Q Consensus 498 ~~~v~~~a~~aL~~L~~~~-------~-~~~~~~~~~~~~~~i~~L~~lL~~~--------~~~v~~~a~~~L~~Ls~~- 560 (864)
......+++.+|.++--.. . ..............+..|+.+|+.. -.+.....+.+|..++..
T Consensus 202 l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~ 281 (446)
T PF10165_consen 202 LDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA 281 (446)
T ss_pred chhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc
Confidence 2345667788888772110 0 0000111223345677777776531 123455666777777776
Q ss_pred hhhHHHHHHC----------------CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc
Q 048757 561 DRNREAIAAA----------------GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE 605 (864)
Q Consensus 561 ~~~~~~i~~~----------------~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~ 605 (864)
...|..+... ..-..|++++.+ ..+.++..++..|+.||...
T Consensus 282 ~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~---~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 282 REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTS---PDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCC---CCchHHHHHHHHHHHHHhhh
Confidence 3344444321 235677888876 56899999999999887554
No 144
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0022 Score=68.64 Aligned_cols=237 Identities=17% Similarity=0.149 Sum_probs=152.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD-- 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~-- 388 (864)
++.|+++|..|+-.+..-+...++++...-.+ ....+...|.|..++.++.+.|..+|....|.|+++..+
T Consensus 433 ~elLi~~Ls~Peimi~~~~t~~icn~vv~fsn-------L~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq 505 (743)
T COG5369 433 VELLIDALSNPEIMIEFPDTIDICNKVVPFSN-------LGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQ 505 (743)
T ss_pred HHHHHHHhcCccceeeccchhhhhheeeeccc-------hHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCc
Confidence 68889999887766666677777776544332 246688899999999999999999999999999998884
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC----CCCcHHHHHhhCc----HHHHHHHHcccCCCCHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV----GEDHKGAIARAGG----IKALVDLIFKWSSWNDGVL 460 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~----~~~~~~~i~~~g~----i~~L~~lL~~~~~~~~~v~ 460 (864)
.+.+-.+...-|+..++.+.+++.-.+++.+..+|.|+.. +++.+..+.+... .+.|++-++. .++-..
T Consensus 506 ~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~---~np~~i 582 (743)
T COG5369 506 KNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEE---NNPMEI 582 (743)
T ss_pred chhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHh---cCchhh
Confidence 3456667778889999999999999999999999999955 2223333333222 3344444442 333333
Q ss_pred HHHHHHHHHhcCCCcchHHHH-hc-CcHHHHHHHHHcc------------------------------------------
Q 048757 461 ERAAGALANLAADDKCSLEVA-RA-GGVHALVMLARSF------------------------------------------ 496 (864)
Q Consensus 461 ~~a~~~L~~L~~~~~~~~~i~-~~-~~i~~Lv~ll~~~------------------------------------------ 496 (864)
+..+.+|.+++..++..+.++ +. ..+..+...+...
T Consensus 583 ~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~ 662 (743)
T COG5369 583 LEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPH 662 (743)
T ss_pred hhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCC
Confidence 345677777776665443332 21 2222222222110
Q ss_pred ----------CchhHHHHHHHHHHHHhhcCCCCc------ccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 048757 497 ----------MFEGVQEQAARALANLVAHGDSNS------NNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNL 557 (864)
Q Consensus 497 ----------~~~~v~~~a~~aL~~L~~~~~~~~------~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 557 (864)
++.+...+..|...++.+..+... +....+.+.|.-+.|...-.+.++.+|+.+-.+|.++
T Consensus 663 ~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 663 LDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred ccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 011233344555555554333222 3344566667767777666677778888888888776
No 145
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.29 E-value=0.00017 Score=71.49 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=86.5
Q ss_pred HHHHHhcCCCCcEEEecCCCCc---hHH-----HH--hCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCC
Q 048757 24 AESLSSRCTNLQALWFRGALSA---DAM-----II--LQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCD 93 (864)
Q Consensus 24 l~~i~~~~~~L~~L~l~~~~~~---~~l-----~~--~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~ 93 (864)
+..+...|.+|++|..++...- ..+ +. .-+++|+.+.++.|. ...+..+...-|.|.++.. .+ +
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~---~~~i~~~~~~kptl~t~~v--~~-s 247 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS---TENIVDIELLKPTLQTICV--HN-T 247 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc---hhheeceeecCchhheeee--ec-c
Confidence 4556677899999999887432 111 11 257889999999987 3444444444567777766 21 1
Q ss_pred CCCHH---------------------H-HHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHH
Q 048757 94 RISSD---------------------A-IKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAA 151 (864)
Q Consensus 94 ~i~~~---------------------~-l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~ 151 (864)
.+++. | +...+..+..|++|++|++. |+. +..-.+-.|+++.|+++++.-.+-..
T Consensus 248 ~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~-I~~--iDESvKL~Pkir~L~lS~N~i~~v~n 324 (490)
T KOG1259|consen 248 TIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNL-ITQ--IDESVKLAPKLRRLILSQNRIRTVQN 324 (490)
T ss_pred cccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccc-hhh--hhhhhhhccceeEEeccccceeeehh
Confidence 11110 0 00011234567777777765 431 22223445777777777754444444
Q ss_pred hcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC
Q 048757 152 LENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 152 ~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~ 191 (864)
+..+++|..||+|+.. ++ .+..+..++-+++.|.+++
T Consensus 325 La~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNL-LA--ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhcccceEeecccch-hH--hhhhhHhhhcCEeeeehhh
Confidence 5577777777777642 11 2233334455555555555
No 146
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.26 E-value=0.021 Score=57.48 Aligned_cols=232 Identities=14% Similarity=0.043 Sum_probs=149.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhC-CHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCch
Q 048757 314 LLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHG-GVRLLLDLARS--PPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 314 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~-~i~~L~~lL~~--~~~~~~~~a~~~L~~L~~~~~ 390 (864)
|-++++.-++-.+..|..++.++...- ..+..++.++ .-..+++.++. ++.++|...+-+++.++.+++
T Consensus 154 Lgkl~Q~i~~lTrlfav~cl~~l~~~~--------e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~ 225 (432)
T COG5231 154 LGKLSQLIDFLTRLFAVSCLSNLEFDV--------EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE 225 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH--------HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH
Confidence 334555666678899999999987443 2445454444 44567788876 678899999999999999998
Q ss_pred hHHHHHhcC-cHHHHHHHHccC-CHHHHHHHHHHHHHhcC-C-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHH
Q 048757 391 VAKAVSENG-GIDILADLARST-NRLVAEEVVGGLWNLSV-G-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGA 466 (864)
Q Consensus 391 ~~~~i~~~g-~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~-~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~ 466 (864)
..+.+-+.. -+..|+++.+.. ...|-+.+++++.|++. . ...-..+.-.|-+.+.++.|..-.-.+++++...-.+
T Consensus 226 ~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i 305 (432)
T COG5231 226 CAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERI 305 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHH
Confidence 776554443 366677777654 45588889999999876 2 2333334445556666666644223344444322221
Q ss_pred HHHhcC----------------------CCc---------chHHHHhc--CcHHHHHHHHHccCchh-HHHHHHHHHHHH
Q 048757 467 LANLAA----------------------DDK---------CSLEVARA--GGVHALVMLARSFMFEG-VQEQAARALANL 512 (864)
Q Consensus 467 L~~L~~----------------------~~~---------~~~~i~~~--~~i~~Lv~ll~~~~~~~-v~~~a~~aL~~L 512 (864)
=..|-. ++. +.+.+.+. ..+..|.++++... +. ....|+.-+..+
T Consensus 306 ~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~-~nt~i~vAc~Di~~~ 384 (432)
T COG5231 306 RSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNN-PNTWICVACSDIFQL 384 (432)
T ss_pred HHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCC-CCceEeeeHhhHHHH
Confidence 111111 111 11122222 24677888888743 33 333455556666
Q ss_pred hhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 048757 513 VAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNL 557 (864)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 557 (864)
.+. .|+.+..+.+.|+=+.+++++.+++++++.+|..++..+
T Consensus 385 Vr~---~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 385 VRA---SPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHh---CchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 654 678889999999999999999999999999999988765
No 147
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.19 E-value=2.4e-05 Score=84.76 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=14.3
Q ss_pred CCccEEeccCCCCCC--HHHhcCCCCcCEEEEeC
Q 048757 134 RQLVEVGFIDSGGVD--EAALENLSSVRYLSIAG 165 (864)
Q Consensus 134 ~~L~~L~l~~c~~i~--~~~~~~~~~L~~L~l~~ 165 (864)
.+|..+|+|.+ +++ .+.+.++++|+.|++|+
T Consensus 222 ~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 222 HNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhcccccc-CCCcchHHHhhhhhhheeccCc
Confidence 34555555432 222 23333555555555555
No 148
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.18 E-value=0.0001 Score=84.11 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=87.1
Q ss_pred CcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCC--CCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHH
Q 048757 53 ARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVC--DRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALA 130 (864)
Q Consensus 53 ~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c--~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 130 (864)
.+.|+.|.+.+.. +||..+..+ .+.++|+.|+| ++. ..+.+..+ .+++.|++|++||+. ++. +..-.
T Consensus 358 ~~~Lq~LylanN~-Ltd~c~p~l-~~~~hLKVLhL--syNrL~~fpas~~----~kle~LeeL~LSGNk-L~~--Lp~tv 426 (1081)
T KOG0618|consen 358 HAALQELYLANNH-LTDSCFPVL-VNFKHLKVLHL--SYNRLNSFPASKL----RKLEELEELNLSGNK-LTT--LPDTV 426 (1081)
T ss_pred hHHHHHHHHhcCc-ccccchhhh-ccccceeeeee--cccccccCCHHHH----hchHHhHHHhcccch-hhh--hhHHH
Confidence 4456666676654 778777665 46789999999 655 23444332 356789999999987 443 22333
Q ss_pred hcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC
Q 048757 131 KQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 131 ~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~ 191 (864)
..|+.|++|...++....-..+..++.|+.+|++ |.+++...+.+.... |+|++||++|
T Consensus 427 a~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSG 485 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSG 485 (1081)
T ss_pred HhhhhhHHHhhcCCceeechhhhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccC
Confidence 4588899988876443322344488999999994 678887777665432 8999999999
No 149
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.15 E-value=0.017 Score=67.99 Aligned_cols=265 Identities=15% Similarity=0.032 Sum_probs=167.4
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhC--CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-----CCC
Q 048757 360 VRLLLDLARS-PPEGLQSEVAKAIANLSV--DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-----GED 431 (864)
Q Consensus 360 i~~L~~lL~~-~~~~~~~~a~~~L~~L~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-----~~~ 431 (864)
++.+...+++ .....+..|+..|..++. +++.+- ...+|.++.++.++...||..|+.+|..+-. .+.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3444444444 345678889999999988 344433 3578999999999999999999999987732 233
Q ss_pred cHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC------------------cchHHHHh----------c
Q 048757 432 HKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADD------------------KCSLEVAR----------A 483 (864)
Q Consensus 432 ~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~------------------~~~~~i~~----------~ 483 (864)
+...+.+. .+|.|-.++.+ +...-+|..-+.+|..|+... .+.+...+ .
T Consensus 500 daniF~eY-lfP~L~~l~~d--~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~ 576 (1431)
T KOG1240|consen 500 DANIFPEY-LFPHLNHLLND--SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH 576 (1431)
T ss_pred cchhhHhh-hhhhhHhhhcc--CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH
Confidence 33344443 67778788764 234455555555555554311 11100000 0
Q ss_pred CcHHHH-HHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChh
Q 048757 484 GGVHAL-VMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDR 562 (864)
Q Consensus 484 ~~i~~L-v~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~ 562 (864)
..|..+ ..++.+ +.+-|+..-+..+..||.- .-+.-...-.+..|+.+|++.|..+|.+-...|..++..-.
T Consensus 577 ~~V~~~v~sLlsd-~~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG 649 (1431)
T KOG1240|consen 577 HTVEQMVSSLLSD-SPPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG 649 (1431)
T ss_pred HHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence 123333 334444 4467888888888888853 11111223467889999999999988777777766655422
Q ss_pred hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 048757 563 NREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNL 642 (864)
Q Consensus 563 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L 642 (864)
-| -++...+|.|.+.|.+ +.+.|...|+++|..|+...-.++..+. ..++...-+|-.++..+|..++..+...
T Consensus 650 ~r--s~seyllPLl~Q~ltD---~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 650 WR--SVSEYLLPLLQQGLTD---GEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred ee--eHHHHHHHHHHHhccC---cchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeCchHHHHHHHHHHHHHH
Confidence 11 1244567888888887 8899999999999988765433322211 1234445566788999999999988877
Q ss_pred cC
Q 048757 643 AF 644 (864)
Q Consensus 643 ~~ 644 (864)
..
T Consensus 724 ~~ 725 (1431)
T KOG1240|consen 724 AR 725 (1431)
T ss_pred Hh
Confidence 64
No 150
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.13 E-value=0.00062 Score=51.23 Aligned_cols=55 Identities=27% Similarity=0.102 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 048757 588 QGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNL 642 (864)
Q Consensus 588 ~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L 642 (864)
|.+|..|+++|++++........-.....++.|+.+|+++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999887744443445567899999999999999999999999875
No 151
>PRK14707 hypothetical protein; Provisional
Probab=97.13 E-value=1.4 Score=55.77 Aligned_cols=394 Identities=15% Similarity=0.056 Sum_probs=197.2
Q ss_pred HHHHhhcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHH
Q 048757 304 DFWLRQGATLLLSLME-SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKA 381 (864)
Q Consensus 304 ~~~~~~gv~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~ 381 (864)
.-+..+++...++.|. =+|..+-..|+..|..=...+.+ .++. .+..++...++.|+ -++..+-..++..
T Consensus 326 ~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~-------l~~~-l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 326 KALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPE-------LRKD-LEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred hccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHh-------hhcc-cchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 3344455666666664 36666666666666553323322 1222 23445666666664 4666677777777
Q ss_pred HHH-HhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHH
Q 048757 382 IAN-LSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLW-NLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGV 459 (864)
Q Consensus 382 L~~-L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v 459 (864)
|.. +..+++.++.+-..|.-..|=.+-+-++..+-..++.+|. .++.+.+.+..+--.+ |...+..+.+|++. +..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~-p~c 475 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDT-PIC 475 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCC-hhH
Confidence 765 7778888888765554444444445667677777777776 5677777776664443 56666777777654 344
Q ss_pred HHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHh
Q 048757 460 LERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539 (864)
Q Consensus 460 ~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL 539 (864)
.+.+-.....|+.+.+.++.+--.+ +..-++.|+..++. ..+..++..++..-.........+...++...+-.+-
T Consensus 476 ~~aa~~La~~l~~~~~l~~a~~~q~-~~~~L~aLSK~Pd~---~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~~lnalS 551 (2710)
T PRK14707 476 GQTASALAARLAHERRLRKALKPQE-VVIALHSLSKWPDT---PICAEAASALAERVVDELQLRKAFDAHQVVNTLKALS 551 (2710)
T ss_pred HHHHHHHHHHhcccHHHHhhcCHHH-HHHHHHHhhcCCCc---HHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHhhh
Confidence 4444445555555555443332222 23333333332221 2333333333321100112222222222222222333
Q ss_pred cCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHH
Q 048757 540 FSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAP 619 (864)
Q Consensus 540 ~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~ 619 (864)
+.++....+.++..|..+...+.....-.+...|..++..|.. -+..+..+..+.+.-..+...+..+..+... .+..
T Consensus 552 Kwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSK-WP~~~aC~~Aa~~LA~~l~~~~~lr~~l~~q-~lan 629 (2710)
T PRK14707 552 KWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSK-WPDTAVCAEAVNALAERLVDEPDLRKELDPV-DVTN 629 (2710)
T ss_pred cCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhcc-CCCcHHHHHHHHHHHHHhccChhhhhhccHH-HHHH
Confidence 4455555555555665543333332223344567788888875 2334555555555555555556555554433 3444
Q ss_pred HHHHH-ccCCHHHHHHHHHHHHH-hcCCcccHHHHHhCCcHHHHHHHhcC-CCcHHHHHHHHHHHHHhhcCCccc-----
Q 048757 620 LIALA-RSAVVDVHETAAGALWN-LAFNPGNALCIVEGGGVQALIHLCSS-SLSKMARFMAALALAYIVDGRMED----- 691 (864)
Q Consensus 620 Lv~lL-~~~~~~v~~~a~~aL~~-L~~~~~~~~~i~~~g~v~~L~~ll~~-~~~~~~r~~aa~aL~~l~~~~~~~----- 691 (864)
+++-| +-++....+.|+..|.. +..+......+- .-.|..++.-++. ++ ......|+..|+......++.
T Consensus 630 ~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fn-aQ~vAn~LNALSKWPe-~e~Cr~Aa~~LA~rLa~~~~Lr~al~ 707 (2710)
T PRK14707 630 VLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFN-SLDVANALNALSKWPD-TPVCAAAAGGMAERLAADPGLRKELN 707 (2710)
T ss_pred HHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcc-hHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHhcChhhHhhcC
Confidence 44444 44444444555555433 444433333333 2334455555533 44 345555666665332222211
Q ss_pred ---ee-eecccccCCCcccchHHHHHHH
Q 048757 692 ---IA-SIGSSLEGTSESENLDVIRRMA 715 (864)
Q Consensus 692 ---~~-~~~~ll~~~~~~v~~~~~~~~a 715 (864)
++ .+-.+.+=++...|..++...|
T Consensus 708 pQ~vAN~LNALSKWP~~~~Cr~AA~~LA 735 (2710)
T PRK14707 708 PVDVANALNALSKWPRTPVCAAVASALA 735 (2710)
T ss_pred HHHHHHHHhhhhcCCCcHHHHHHHHHHH
Confidence 11 2333566677777777774333
No 152
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.08 E-value=0.0026 Score=62.60 Aligned_cols=202 Identities=19% Similarity=0.180 Sum_probs=128.7
Q ss_pred CCeecCCCCCCCHHHHHHHHhcCCC---CcEEEecCCCCc-------hHH----HH-hCCcccceeeeecCCCC--CHHH
Q 048757 9 WSSLDLRPYKFDTSAAESLSSRCTN---LQALWFRGALSA-------DAM----II-LQARRLREINVEFCREL--TDAI 71 (864)
Q Consensus 9 w~~ldL~~~~~~~~~l~~i~~~~~~---L~~L~l~~~~~~-------~~l----~~-~~~~~L~~L~l~~c~~l--~d~~ 71 (864)
.+.+||+++.++.+..+.++....+ |+..+|+....- +++ .. ..||+|+.++||..-.- +..-
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 5679999999999887777665544 667777765321 121 11 39999999999986521 2344
Q ss_pred HHHHHhCCCCcceEEeccCCCCCCCHH-------HHHHHH-----hcCcCcCeeeecccCCC--cHHHHHHHHhcCCCcc
Q 048757 72 FSAIVARHEMLEILHFGLDVCDRISSD-------AIKTVA-----YCCPKLRRLWLSGVREV--NGDAINALAKQCRQLV 137 (864)
Q Consensus 72 l~~l~~~~~~L~~L~l~~~~c~~i~~~-------~l~~l~-----~~~~~L~~L~l~~~~~l--~~~~l~~l~~~~~~L~ 137 (864)
+..+.+...+|++|.+ +.|. +... ++.+++ ..-|.|+......++.. +..-.....+.-.+|+
T Consensus 112 L~d~is~~t~l~HL~l--~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 112 LGDLISSSTDLVHLKL--NNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred HHHHHhcCCCceeEEe--ecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 5566677899999999 6663 3322 233333 34688999988877622 2233333444336899
Q ss_pred EEeccCCCCCCHHHhc--------CCCCcCEEEEeCCCCCCHHHHHHHH---hcCCCCcEEecCC---CCCCHHHHHHHh
Q 048757 138 EVGFIDSGGVDEAALE--------NLSSVRYLSIAGTRNLNWSSAAIAW---SKLTSLVGLDTSR---TNINLSSVTRLL 203 (864)
Q Consensus 138 ~L~l~~c~~i~~~~~~--------~~~~L~~L~l~~c~~~~~~~l~~l~---~~~~~L~~L~l~~---~~~~~~~l~~~~ 203 (864)
++.+..+ .|.+.++. .|.+|+.||+... .+|-.+..++. ..-+.|+.|.+.. ...+...+.+-+
T Consensus 189 ~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f 266 (388)
T COG5238 189 EVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF 266 (388)
T ss_pred eEEeeec-CcCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh
Confidence 9999874 46666544 8899999999874 35555555444 2345677787776 445555555444
Q ss_pred cC--CCCCcEEEcc
Q 048757 204 SS--SRNLKVLIAL 215 (864)
Q Consensus 204 ~~--~~~L~~L~~~ 215 (864)
+. .|+|..|...
T Consensus 267 ~e~~~p~l~~L~~~ 280 (388)
T COG5238 267 NEKFVPNLMPLPGD 280 (388)
T ss_pred hhhcCCCccccccc
Confidence 32 2566665443
No 153
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.45 Score=53.59 Aligned_cols=212 Identities=15% Similarity=0.082 Sum_probs=149.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHH
Q 048757 402 DILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLE 479 (864)
Q Consensus 402 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~ 479 (864)
+-++.+|++..+.++..|..+|..+.- .|+. +. ..+|.|.+-|+ ++++.|+..|+.+++.|++.++ +--
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA---lr--~~FprL~EkLe---DpDp~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA---LR--PCFPRLVEKLE---DPDPSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh---Hh--hhHHHHHHhcc---CCCchHHHHHHHHHHHHHhhCCcccc-
Confidence 347788899999999999999998753 3322 11 25688888886 5889999999999999998765 322
Q ss_pred HHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCC-HHHHHHHHHHHH--H
Q 048757 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKH-EGVRQEAAGALW--N 556 (864)
Q Consensus 480 i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~--~ 556 (864)
..-|.+.+++...++--+....+...++|+-. .|.. ....+++|.+++++.. ..+..+++.++. +
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl---EPRL-----gKKLieplt~li~sT~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL---EPRL-----GKKLIEPITELMESTVAMSLLYECVNTVVAVS 285 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhcccc---Cchh-----hhhhhhHHHHHHHhhHHHHHHHHHHHHheeeh
Confidence 23577888888777667777788888888764 2222 2346788999988764 345555655553 3
Q ss_pred hcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHH
Q 048757 557 LSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHET 634 (864)
Q Consensus 557 Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~ 634 (864)
++.. +++-..+ . -+++.|-.++.+ .++.++.-++-+++.+... +..-+. --..++++|.+.++.+|..
T Consensus 286 ~s~g~~d~~asi-q-LCvqKLr~fied---sDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlr 355 (877)
T KOG1059|consen 286 MSSGMSDHSASI-Q-LCVQKLRIFIED---SDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLR 355 (877)
T ss_pred hccCCCCcHHHH-H-HHHHHHhhhhhc---CCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHH
Confidence 3332 2222222 1 156777788887 8999999999999987653 332111 2346789999999999999
Q ss_pred HHHHHHHhcC
Q 048757 635 AAGALWNLAF 644 (864)
Q Consensus 635 a~~aL~~L~~ 644 (864)
|+..|.-+..
T Consensus 356 ALdLl~gmVs 365 (877)
T KOG1059|consen 356 ALDLLYGMVS 365 (877)
T ss_pred HHHHHHHHhh
Confidence 9999999874
No 154
>PRK14707 hypothetical protein; Provisional
Probab=97.05 E-value=1.7 Score=55.06 Aligned_cols=472 Identities=17% Similarity=0.104 Sum_probs=236.7
Q ss_pred HHhhcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh-cCCCHHHHHHHHHHHH
Q 048757 306 WLRQGATLLLSLME-SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA-RSPPEGLQSEVAKAIA 383 (864)
Q Consensus 306 ~~~~gv~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~ 383 (864)
++-+||...++.|. =++..+-..|+..|..=...+ +..++.+ +...+.-.++.| +.++..+-..|+..|.
T Consensus 244 ~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-------~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la 315 (2710)
T PRK14707 244 LKPQELGNALNALSKWADTPVCAAAASALAERLVDD-------PGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALA 315 (2710)
T ss_pred CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-------HHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence 44566666777774 466666666666665422111 1122223 233334444444 4577777777777766
Q ss_pred H-HhCCchhHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHH-HhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHH
Q 048757 384 N-LSVDSKVAKAVSENGGIDILADLA-RSTNRLVAEEVVGGLW-NLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVL 460 (864)
Q Consensus 384 ~-L~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~ 460 (864)
. |..+++.+..+- ..++...++.| +-++..+-..|+.+|. .++.+++.+..+- ..++...+.-+.+|++. +..+
T Consensus 316 ~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~-~~c~ 392 (2710)
T PRK14707 316 ERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDT-PVCA 392 (2710)
T ss_pred HHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCc-hHHH
Confidence 5 777887776553 34455555555 4455555555666655 6777777766664 34677777888777643 3444
Q ss_pred HHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhc
Q 048757 461 ERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTF 540 (864)
Q Consensus 461 ~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~ 540 (864)
..|...=..+..+.+.+..+ +..++...+..|..-++..+-..++.+|..--.+ ..+.++.+--.++ ...++.+.
T Consensus 393 ~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~---d~~l~~~~~p~~v-a~~LnalS 467 (2710)
T PRK14707 393 AAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLPICGQAVSALAGRLAH---DTELCKALDPINV-TQALDALS 467 (2710)
T ss_pred HHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc---cHHHHhhcChHHH-HHHHHHhh
Confidence 44444444455444444444 5566777777777665556666666666654443 3444444433333 33333333
Q ss_pred -CCCHHHHHHHHHHH-HHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHH
Q 048757 541 -SKHEGVRQEAAGAL-WNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVA 618 (864)
Q Consensus 541 -~~~~~v~~~a~~~L-~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~ 618 (864)
=++..+-..|+..| ..|+.+.+.++.+--.++...| ..|.. .+..+...+.+.++-+.+.........|...+...
T Consensus 468 KWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L-~aLSK-~Pd~~~c~~A~~~lA~rl~~~~~l~~~~~~~~~~~ 545 (2710)
T PRK14707 468 KWPDTPICGQTASALAARLAHERRLRKALKPQEVVIAL-HSLSK-WPDTPICAEAASALAERVVDELQLRKAFDAHQVVN 545 (2710)
T ss_pred cCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHH-HHhhc-CCCcHHHHHHHHHHHHHhccchhhhhhhhhHHHHH
Confidence 34545555555555 4677666655544333222233 33332 13345555556666666665555444444443333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhc-CCCcHHHHHHHHHHHHHhhcCCccc------
Q 048757 619 PLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCS-SSLSKMARFMAALALAYIVDGRMED------ 691 (864)
Q Consensus 619 ~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~-~~~~~~~r~~aa~aL~~l~~~~~~~------ 691 (864)
.+-.+-+.++...-+.++..|..+..+......-...-.|..++..++ -++.+.-+. |+..|+......++.
T Consensus 546 ~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~~L~aq~Vs~llNaLSKWP~~~aC~~-Aa~~LA~~l~~~~~lr~~l~~ 624 (2710)
T PRK14707 546 TLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVIVLNALSKWPDTAVCAE-AVNALAERLVDEPDLRKELDP 624 (2710)
T ss_pred HHHhhhcCCchhHHHHHHHHHHHHhhcchhhHHhhhhhHHHHHHHhhccCCCcHHHHH-HHHHHHHHhccChhhhhhccH
Confidence 344444555556666666666665443332222333445666666664 355444444 444444333333322
Q ss_pred --ee-eecccccCCCcccchHHHHHHHHHHHHhhc-ccccchhhhhHHHHhccChhhHHHHhhccchhHHh-ccccccCc
Q 048757 692 --IA-SIGSSLEGTSESENLDVIRRMALKHIEDFC-AGRIALKHIEDFVRSFSDPQAFATALASAVPKSLA-QITEGARI 766 (864)
Q Consensus 692 --~~-~~~~ll~~~~~~v~~~~~~~~al~~l~~~~-~g~~~~~~i~~l~~~~~~~~~~~~a~~~~a~~~l~-~~~~~~~~ 766 (864)
++ .+..+.+-++...|..++.+.|=..+.+.. ...+.-+.|...+...|.--..+.+. .|...++ .++.....
T Consensus 625 q~lan~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe~e~Cr--~Aa~~LA~rLa~~~~L 702 (2710)
T PRK14707 625 VDVTNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPDTPVCA--AAAGGMAERLAADPGL 702 (2710)
T ss_pred HHHHHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCCchHHH--HHHHHHHHHHhcChhh
Confidence 11 122356666667776665222211111101 12233345666665443321111111 1111222 22222111
Q ss_pred ccccccccchhhHHHHHHHhcC-CcHHHHHHHHHHHH
Q 048757 767 PEAAHLRCSGAEIGRFVSMLRN-PSSILKACAAVALL 802 (864)
Q Consensus 767 ~~~~~~~~~~~~i~~lv~~l~~-~~~~~~~~Aa~al~ 802 (864)
.. -++.+++...+.-|+- ++...-+.||.+|.
T Consensus 703 r~----al~pQ~vAN~LNALSKWP~~~~Cr~AA~~LA 735 (2710)
T PRK14707 703 RK----ELNPVDVANALNALSKWPRTPVCAAVASALA 735 (2710)
T ss_pred Hh----hcCHHHHHHHHhhhhcCCCcHHHHHHHHHHH
Confidence 11 1466677777777764 44455555565663
No 155
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.02 E-value=0.13 Score=60.14 Aligned_cols=367 Identities=14% Similarity=0.076 Sum_probs=215.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC---
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV--- 387 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~--- 387 (864)
-+..-++-++.++.+|..++.-+++++..- .......+.++.+.++..+....++..|...+.++..
T Consensus 239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~----------~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVL----------ESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHhhccccchhhHHHHHhhhHHHHHHH----------HHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 344444557778899999999999987433 2356778889999999999889999999988888765
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
++. =......+.+++..++.+..++.......+.+...=. .......-+++...++.. ...+++..++.-.
T Consensus 309 ~~~----d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~--~~~~~~~~~~~~~~l~~~---~~~e~r~a~a~~~ 379 (759)
T KOG0211|consen 309 DDD----DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG--PSATRTQLVPPVSNLLKD---EEWEVRYAIAKKV 379 (759)
T ss_pred Cch----hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc--cccCcccchhhHHHHhcc---hhhhhhHHhhcch
Confidence 221 1112346778888888888888888888777754100 011122345666666652 4445555555544
Q ss_pred HHhcCC--CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHH
Q 048757 468 ANLAAD--DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEG 545 (864)
Q Consensus 468 ~~L~~~--~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 545 (864)
..++.. .++...+.....+|.+-.++.+ ..+.++...+.....+.-. .+ ..-.-....|.++..+++..++
T Consensus 380 ~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d-~~~~vr~a~a~~~~~~~p~---~~---k~~ti~~llp~~~~~l~de~~~ 452 (759)
T KOG0211|consen 380 QKLACYLNASCYPNIPDSSILPEVQVLVLD-NALHVRSALASVITGLSPI---LP---KERTISELLPLLIGNLKDEDPI 452 (759)
T ss_pred HHHhhhcCcccccccchhhhhHHHHHHHhc-ccchHHHHHhccccccCcc---CC---cCcCccccChhhhhhcchhhHH
Confidence 444433 2234455555567777777766 3566666555544444321 11 1111123456677788888999
Q ss_pred HHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHH
Q 048757 546 VRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALA 624 (864)
Q Consensus 546 v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL 624 (864)
++......+..+-.. +...........++.+..+-.+ ....++.+....+..++.... ..+.+...-+.+..-+
T Consensus 453 V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d---~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l 527 (759)
T KOG0211|consen 453 VRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAED---LLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWL 527 (759)
T ss_pred HHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccc---hhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhh
Confidence 998888666544222 2222223334456777776665 467788888887776664322 1222222233333445
Q ss_pred ccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcccee------eeccc
Q 048757 625 RSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIA------SIGSS 698 (864)
Q Consensus 625 ~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~------~~~~l 698 (864)
.+..-.++..|+..+..++..-.... .....++.+.....+++ ...|...+.++.-++.---+.+. .+..+
T Consensus 528 ~d~v~~Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~~-y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l 604 (759)
T KOG0211|consen 528 PDHVYSIREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQDN-YLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDL 604 (759)
T ss_pred hhhHHHHHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCcc-cchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHh
Confidence 55566788888888888875222111 11233555555554442 55666655555544332111111 23336
Q ss_pred ccCCCcccchHHH
Q 048757 699 LEGTSESENLDVI 711 (864)
Q Consensus 699 l~~~~~~v~~~~~ 711 (864)
..|...+|+...|
T Consensus 605 ~~D~vanVR~nva 617 (759)
T KOG0211|consen 605 VKDPVANVRINVA 617 (759)
T ss_pred ccCCchhhhhhHH
Confidence 7788888888887
No 156
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.01 E-value=0.00053 Score=80.70 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=25.3
Q ss_pred CCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 156 SSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 156 ~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
++|+.|++++|. ++. +.. .-+++|+.|+++++... .+...+ .++|+.|++.+|..
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~L~--~LP~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKNQIT--VLPETL--PPTITTLDVSRNAL 379 (754)
T ss_pred ccceeccccCCc-ccc--CCh--hhcCcccEEECCCCCCC--cCChhh--cCCcCEEECCCCcC
Confidence 456666666653 221 111 01346666666663322 111111 14566666666643
No 157
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.91 E-value=0.0022 Score=44.73 Aligned_cols=38 Identities=34% Similarity=0.391 Sum_probs=35.3
Q ss_pred hhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 606 ANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 606 ~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
+++..+.+.|++++|++++++++++++..|+++|+|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778899999999999999999999999999999997
No 158
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=96.90 E-value=0.0017 Score=68.43 Aligned_cols=268 Identities=20% Similarity=0.088 Sum_probs=142.2
Q ss_pred HccCCHHHHHHHHHHHHHhcC------CCCcHHHHHhhCcH------HHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc
Q 048757 408 ARSTNRLVAEEVVGGLWNLSV------GEDHKGAIARAGGI------KALVDLIFKWSSWNDGVLERAAGALANLAADDK 475 (864)
Q Consensus 408 L~~~~~~v~~~a~~aL~~Ls~------~~~~~~~i~~~g~i------~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~ 475 (864)
+.+.++.++++++..+..+.. .|+.-..=...|.+ .+.-....+ +..+..+..++..+.++.....
T Consensus 304 ~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YD--s~~~Tl~~s~Cdals~i~~~~f 381 (728)
T KOG4535|consen 304 MGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYD--SEHPTLQASACDALSSILPEAF 381 (728)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhh--hcCCCchhHHHHHHhhcCchhh
Confidence 356788999999998887732 12111111111111 111122322 3444566677777777754321
Q ss_pred chHHHHhcCcHHHHHHHHH---ccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHH
Q 048757 476 CSLEVARAGGVHALVMLAR---SFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAG 552 (864)
Q Consensus 476 ~~~~i~~~~~i~~Lv~ll~---~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 552 (864)
.. ...|--....-++. ++.+.-++..|.+++.-+.-|+. .......-..+.......+.+..-..|+.+++
T Consensus 382 ~~---lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~---lr~d~~fv~~aa~~il~sl~d~~ln~r~Kaaw 455 (728)
T KOG4535|consen 382 SN---LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPC---LRQDVIFVADAANAILMSLEDKSLNVRAKAAW 455 (728)
T ss_pred cC---CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccc---hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHH
Confidence 10 00111111111221 21222244456666655555421 11112222244455556666667778999999
Q ss_pred HHHHhcCC-----hh---hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc----hhhHHhhhcCCHHHH
Q 048757 553 ALWNLSFD-----DR---NREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE----ANSIAIGREGGVAPL 620 (864)
Q Consensus 553 ~L~~Ls~~-----~~---~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~----~~~~~i~~~~~i~~L 620 (864)
++.|++.- +. ..+.+.. -.+..++..-..+......|+.+|+.+|+|+.+-- +..-.....+.+..+
T Consensus 456 tlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l 534 (728)
T KOG4535|consen 456 SLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQAL 534 (728)
T ss_pred HhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhc
Confidence 99998541 11 1111111 12444444444334467889999999999987531 111111122233333
Q ss_pred HHH-HccCCHHHHHHHHHHHHHhcCCcccH--HHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 048757 621 IAL-ARSAVVDVHETAAGALWNLAFNPGNA--LCIVEGGGVQALIHLCSSSLSKMARFMAALALAYI 684 (864)
Q Consensus 621 v~l-L~~~~~~v~~~a~~aL~~L~~~~~~~--~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l 684 (864)
+.. .-...-.|+.+|+.+++||..++..+ ..=...-+.+.|..++.+..+-.+|.+||.+|..-
T Consensus 535 ~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 535 ISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred ccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 322 22456789999999999999866432 11122345788999998876688999999999743
No 159
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.89 E-value=0.0026 Score=44.33 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=36.4
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV 428 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 428 (864)
++.+..+.+.|+++.|+++++++++.+++.++++|+||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4577889999999999999999999999999999999873
No 160
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.88 E-value=0.00081 Score=78.84 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHH
Q 048757 414 LVAEEVVGGLWNLSVGEDHKGAI 436 (864)
Q Consensus 414 ~v~~~a~~aL~~Ls~~~~~~~~i 436 (864)
..+..+...|..++.+++.|+.+
T Consensus 547 ~~~~~V~~~l~~~~~~~~LR~~~ 569 (788)
T PRK15387 547 GFKAQISSWLAQLAEDEALRANT 569 (788)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH
Confidence 34455555555555555444444
No 161
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.86 E-value=0.001 Score=41.01 Aligned_cols=24 Identities=46% Similarity=0.840 Sum_probs=10.8
Q ss_pred CcCcCeeeecccCCCcHHHHHHHH
Q 048757 107 CPKLRRLWLSGVREVNGDAINALA 130 (864)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~l~~l~ 130 (864)
||+|++|+|++|..+||.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 344444444444444444444443
No 162
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.86 E-value=0.0015 Score=49.15 Aligned_cols=55 Identities=31% Similarity=0.102 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 048757 629 VDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYI 684 (864)
Q Consensus 629 ~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l 684 (864)
+.||..|+++|++++........-....+++.|+.++.+++ +.||..|+++|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~-~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDD-DSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSS-HHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHhcC
Confidence 46899999999998875555554466688999999998876 68999999999864
No 163
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=96.83 E-value=0.092 Score=61.29 Aligned_cols=371 Identities=15% Similarity=0.049 Sum_probs=220.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
++.+.++..++.+.+|..|...+.++...-+.. .=......+.+++..++++..++.........+...-.
T Consensus 278 ~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~---------~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~ 348 (759)
T KOG0211|consen 278 LPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD---------DDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG 348 (759)
T ss_pred cHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc---------hhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc
Confidence 678888888888999999999888865322110 01124567888888888888888888877777654211
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 391 VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
- ......-+++...++++...+++..++.-...++. +.+.+..+.....++.+-.+.. +.+..++...+..+.
T Consensus 349 ~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~---d~~~~vr~a~a~~~~ 423 (759)
T KOG0211|consen 349 P--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVL---DNALHVRSALASVIT 423 (759)
T ss_pred c--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHh---cccchHHHHHhcccc
Confidence 0 12222346777888888777777777666666644 3334445555556677777765 356666666555544
Q ss_pred HhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHH
Q 048757 469 NLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQ 548 (864)
Q Consensus 469 ~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 548 (864)
.+.-.-. ..-.-....|.+...+++ ..++++.+....+..+-.. ++...........++.+..+-......++.
T Consensus 424 ~~~p~~~--k~~ti~~llp~~~~~l~d-e~~~V~lnli~~ls~~~~v---~~v~g~~~~s~slLp~i~el~~d~~wRvr~ 497 (759)
T KOG0211|consen 424 GLSPILP--KERTISELLPLLIGNLKD-EDPIVRLNLIDKLSLLEEV---NDVIGISTVSNSLLPAIVELAEDLLWRVRL 497 (759)
T ss_pred ccCccCC--cCcCccccChhhhhhcch-hhHHHHHhhHHHHHHHHhc---cCcccchhhhhhhhhhhhhhccchhHHHHH
Confidence 4432211 000112234556666666 3588888887766555443 333334444555667777766666677888
Q ss_pred HHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCC
Q 048757 549 EAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAV 628 (864)
Q Consensus 549 ~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~ 628 (864)
+..+.+..++.... ..+......+.+...+.+ ....++.+|+..+..++.--. ..+ .....++.++.....++
T Consensus 498 ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d---~v~~Ir~~aa~~l~~l~~~~G-~~w-~~~~~i~k~L~~~~q~~ 570 (759)
T KOG0211|consen 498 AILEYIPQLALQLG--VEFFDEKLAELLRTWLPD---HVYSIREAAARNLPALVETFG-SEW-ARLEEIPKLLAMDLQDN 570 (759)
T ss_pred HHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhh---hHHHHHHHHHHHhHHHHHHhC-cch-hHHHhhHHHHHHhcCcc
Confidence 88888887765433 122222223333333443 566788888888876553211 111 11223455555554445
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccc-----ee-eecccccCC
Q 048757 629 VDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMED-----IA-SIGSSLEGT 702 (864)
Q Consensus 629 ~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~-----~~-~~~~ll~~~ 702 (864)
-.+|...+.++..++. -.-..+..+..+|.+.++..++. +.+|.++|..|..+...=... +. +..++.+|.
T Consensus 571 y~~R~t~l~si~~la~--v~g~ei~~~~Llp~~~~l~~D~v-anVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~ 647 (759)
T KOG0211|consen 571 YLVRMTTLFSIHELAE--VLGQEITCEDLLPVFLDLVKDPV-ANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ 647 (759)
T ss_pred cchhhHHHHHHHHHHH--HhccHHHHHHHhHHHHHhccCCc-hhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc
Confidence 5667766666665542 11123445567889999998886 899999999887665432211 11 233366677
Q ss_pred CcccchHHH
Q 048757 703 SESENLDVI 711 (864)
Q Consensus 703 ~~~v~~~~~ 711 (864)
+.+++..+.
T Consensus 648 ~~dvr~~a~ 656 (759)
T KOG0211|consen 648 ELDVRYRAI 656 (759)
T ss_pred ccchhHHHH
Confidence 777776665
No 164
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=1.8 Score=49.63 Aligned_cols=64 Identities=25% Similarity=0.143 Sum_probs=46.2
Q ss_pred HHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 048757 488 ALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 488 ~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~ 560 (864)
.+-..+++ ..+.+...|+.++.++... ..+. +. .++..|--++.++..-+|-.|.++|..+|.-
T Consensus 249 fl~s~l~~-K~emV~~EaArai~~l~~~-----~~r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~ 312 (865)
T KOG1078|consen 249 FLESCLRH-KSEMVIYEAARAIVSLPNT-----NSRE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMK 312 (865)
T ss_pred HHHHHHhc-hhHHHHHHHHHHHhhcccc-----CHhh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHh
Confidence 33444444 4578888999999988753 1111 11 2777888889999999999999999998764
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.63 E-value=0.0036 Score=67.16 Aligned_cols=166 Identities=19% Similarity=0.231 Sum_probs=100.4
Q ss_pred HhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcC
Q 048757 28 SSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCC 107 (864)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~ 107 (864)
...|++++.|++++| .+..++. --++|++|.+++|..++.. .. ...++|++|++ ++|..++. -.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~-LP~sLtsL~Lsnc~nLtsL--P~--~LP~nLe~L~L--s~Cs~L~s--------LP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV-LPNELTEITIENCNNLTTL--PG--SIPEGLEKLTV--CHCPEISG--------LP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC-CCCCCcEEEccCCCCcccC--Cc--hhhhhhhheEc--cCcccccc--------cc
Confidence 345899999999999 4444442 2236999999999876332 11 12468999999 78876641 23
Q ss_pred cCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc--CCCCcCEEEEeCCCCCCHHHHHHHHhcC-CCC
Q 048757 108 PKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE--NLSSVRYLSIAGTRNLNWSSAAIAWSKL-TSL 184 (864)
Q Consensus 108 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~--~~~~L~~L~l~~c~~~~~~~l~~l~~~~-~~L 184 (864)
+.|++|++++.. ... +..--++|++|.+.++.......+. -.++|++|++++|..+.- ...+ ++|
T Consensus 112 ~sLe~L~L~~n~-~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L------P~~LP~SL 179 (426)
T PRK15386 112 ESVRSLEIKGSA-TDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL------PEKLPESL 179 (426)
T ss_pred cccceEEeCCCC-Ccc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcccC------cccccccC
Confidence 578899887543 221 2222357888888654322222221 236899999999986531 1112 478
Q ss_pred cEEecCCCC-CCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 185 VGLDTSRTN-INLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 185 ~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
+.|+++... .+.+.....+ .+++ .|.+.+|..++...
T Consensus 180 k~L~ls~n~~~sLeI~~~sL--P~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 180 QSITLHIEQKTTWNISFEGF--PDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred cEEEecccccccccCccccc--cccc-EechhhhcccCHHH
Confidence 889887621 1111111112 1556 88888887776554
No 166
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.57 E-value=0.0024 Score=39.35 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=13.0
Q ss_pred CCCcceEEeccCCCCCCCHHHHHHHH
Q 048757 79 HEMLEILHFGLDVCDRISSDAIKTVA 104 (864)
Q Consensus 79 ~~~L~~L~l~~~~c~~i~~~~l~~l~ 104 (864)
||+|++|+| ++|.+|||.++..++
T Consensus 1 c~~L~~L~l--~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDL--SGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCC--CCCCCcCHHHHHHHh
Confidence 455555555 555555555555544
No 167
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.56 E-value=0.00038 Score=77.27 Aligned_cols=183 Identities=20% Similarity=0.177 Sum_probs=91.2
Q ss_pred HHHHHHhcCCCCcEEEecCCCCchH---HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceE--------------
Q 048757 23 AAESLSSRCTNLQALWFRGALSADA---MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEIL-------------- 85 (864)
Q Consensus 23 ~l~~i~~~~~~L~~L~l~~~~~~~~---l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L-------------- 85 (864)
-++.|....++++.|.+-....-+. +.-..++.|++|.+.+|.--+-.|+..+-. .|++|
T Consensus 75 qLq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~Sl~Al~~v~a 151 (1096)
T KOG1859|consen 75 QLQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHNSLDALRHVFA 151 (1096)
T ss_pred HHHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhccHHHHHHHHH
Confidence 4566666667766666655443322 222267889999999988445455554421 12222
Q ss_pred ------------------EeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC-
Q 048757 86 ------------------HFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG- 146 (864)
Q Consensus 86 ------------------~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~- 146 (864)
+. + |+.++ .+..-.+.+|.|++|+|+.+. +++- ..| +.|++|++|||+++..
T Consensus 152 scggd~~ns~~Wn~L~~a~f--s-yN~L~--~mD~SLqll~ale~LnLshNk-~~~v--~~L-r~l~~LkhLDlsyN~L~ 222 (1096)
T KOG1859|consen 152 SCGGDISNSPVWNKLATASF--S-YNRLV--LMDESLQLLPALESLNLSHNK-FTKV--DNL-RRLPKLKHLDLSYNCLR 222 (1096)
T ss_pred HhccccccchhhhhHhhhhc--c-hhhHH--hHHHHHHHHHHhhhhccchhh-hhhh--HHH-Hhcccccccccccchhc
Confidence 11 1 11110 111112234667777777766 4442 233 3477778887776431
Q ss_pred -CCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 147 -VDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 147 -i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
+.--+..+|. |..|.+++...-+ +..+ .++.+|..||++++-...-.-..++..+..|+.|++.|.|..-.
T Consensus 223 ~vp~l~~~gc~-L~~L~lrnN~l~t---L~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 223 HVPQLSMVGCK-LQLLNLRNNALTT---LRGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cccccchhhhh-heeeeecccHHHh---hhhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 1112222454 6666666643222 2222 35667778888772211111111222234567777777765543
No 168
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.19 Score=61.17 Aligned_cols=310 Identities=16% Similarity=0.114 Sum_probs=163.5
Q ss_pred HHHHHHhcCCCHHHHHH-HHHHHH---HHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCCcHH
Q 048757 361 RLLLDLARSPPEGLQSE-VAKAIA---NLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV--GEDHKG 434 (864)
Q Consensus 361 ~~L~~lL~~~~~~~~~~-a~~~L~---~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~ 434 (864)
..+...+.++++..|.. ++|.|. .++..++..... ......+..+|.+.|+-+|..|.+-|+-.=. +...+.
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~--~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k~ 898 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLML--KEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLKK 898 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhcc--HHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhHH
Confidence 34455667788888866 344443 244344432221 1223678888999888899999888765421 223333
Q ss_pred HHHhhCcHHHHHHHHcccC------CCCHHHHH-------------HHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHc
Q 048757 435 AIARAGGIKALVDLIFKWS------SWNDGVLE-------------RAAGALANLAADDKCSLEVARAGGVHALVMLARS 495 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~~------~~~~~v~~-------------~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~ 495 (864)
+.+..|++-|..-. +++.++-+ ..-.=|.+|+.+ +.+.+-|-.++++.++
T Consensus 899 -----~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASd------l~qPdLVYKFM~LAnh 967 (1702)
T KOG0915|consen 899 -----SLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASD------LGQPDLVYKFMQLANH 967 (1702)
T ss_pred -----HHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhh------cCChHHHHHHHHHhhh
Confidence 34455555553200 01111110 111112222211 1122223334444444
Q ss_pred cCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHh-cCChhhHHHHHHCCChH
Q 048757 496 FMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNL-SFDDRNREAIAAAGGVE 574 (864)
Q Consensus 496 ~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L-s~~~~~~~~i~~~~~i~ 574 (864)
.-...-+.-|+-.+..++... ....+. .-...||.|.+.=.+++..|+.+ +.-|||. ..++.. .++.-.-+
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a--~~kl~p--~l~kLIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~k~---~vd~y~ne 1039 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQA--GEKLEP--YLKKLIPRLYRYQYDPDKKVQDA-MTSIWNALITDSKK---VVDEYLNE 1039 (1702)
T ss_pred hchhhcccchhhchHHHHHHH--HHhhhh--HHHHhhHHHhhhccCCcHHHHHH-HHHHHHHhccChHH---HHHHHHHH
Confidence 322333455565666665531 001111 11246778888877889988765 4456654 333222 11211223
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh-cCCHHHHHHHHccCCHHHHHH---HHHHHHHhcC---Ccc
Q 048757 575 ALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR-EGGVAPLIALARSAVVDVHET---AAGALWNLAF---NPG 647 (864)
Q Consensus 575 ~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~-~~~i~~Lv~lL~~~~~~v~~~---a~~aL~~L~~---~~~ 647 (864)
.+-++|..+.+....+|++++.||..|-+..+.-+..-+ ...|..+.+.+++-.+.||+. ++.+|..++. ++.
T Consensus 1040 Il~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 333344444458899999999999999987544322222 245666777776666778775 5555666553 322
Q ss_pred c--HHHHHhCCcHHHHHH--HhcCCCcHHHHHHHHHHHHHhhcCCcccee
Q 048757 648 N--ALCIVEGGGVQALIH--LCSSSLSKMARFMAALALAYIVDGRMEDIA 693 (864)
Q Consensus 648 ~--~~~i~~~g~v~~L~~--ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~ 693 (864)
+ +..-+-..++|.|++ .+ + .-+.+|..+...+..+.+.....+.
T Consensus 1120 ~~~~~~~~l~~iLPfLl~~gim-s-~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1120 NGAKGKEALDIILPFLLDEGIM-S-KVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred CcccHHHHHHHHHHHHhccCcc-c-chHHHHHHHHHHHHHHHHhchhhhc
Confidence 1 111112245666663 33 3 3478999999999999988876554
No 169
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.47 E-value=1.8 Score=50.47 Aligned_cols=102 Identities=19% Similarity=0.247 Sum_probs=83.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-Cc
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DS 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~ 389 (864)
+..+.+=++++++.+|-.|...++.+-. ..+ -..+++++.+++.++++.||..|+-++.++.. ++
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~-------------~el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~ 159 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRV-------------KEL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK 159 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCh-------------HHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH
Confidence 6677777889999999999999988631 112 25678999999999999999999999999986 55
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG 429 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~ 429 (864)
+. +.+.|.+..+..++.+.+|.+...|..+|..+...
T Consensus 160 ~l---~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 160 DL---YHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred hh---hhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 43 44567788888899999999999999999988543
No 170
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.46 E-value=0.0047 Score=72.94 Aligned_cols=186 Identities=14% Similarity=0.169 Sum_probs=92.4
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceE
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEIL 85 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L 85 (864)
|...+.|+|+++.+.. +.. ..+++|+.|++++|... .++..-.++|+.|++++|. ++.- .. ...++|+.|
T Consensus 198 p~~L~~L~Ls~N~Lts--LP~--~l~~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~-L~~L--P~--~l~s~L~~L 267 (754)
T PRK15370 198 PEQITTLILDNNELKS--LPE--NLQGNIKTLYANSNQLT-SIPATLPDTIQEMELSINR-ITEL--PE--RLPSALQSL 267 (754)
T ss_pred ccCCcEEEecCCCCCc--CCh--hhccCCCEEECCCCccc-cCChhhhccccEEECcCCc-cCcC--Ch--hHhCCCCEE
Confidence 4456788888776542 111 12357888888877532 2222123467777777765 3321 10 012467777
Q ss_pred EeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcH------HHHHHHH-----------hcCCCccEEeccCCCCCC
Q 048757 86 HFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNG------DAINALA-----------KQCRQLVEVGFIDSGGVD 148 (864)
Q Consensus 86 ~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~------~~l~~l~-----------~~~~~L~~L~l~~c~~i~ 148 (864)
++ + |.+++. +.. ..+++|+.|++++|. ++. ..+..+- ...++|+.|++++|. ++
T Consensus 268 ~L--s-~N~L~~--LP~--~l~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt 338 (754)
T PRK15370 268 DL--F-HNKISC--LPE--NLPEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LT 338 (754)
T ss_pred EC--c-CCccCc--ccc--ccCCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cc
Confidence 77 4 334431 111 113466666666654 321 1111110 113567888887764 33
Q ss_pred HHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 149 EAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 149 ~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
...-.-+++|+.|++++|. ++.- ...+ .++|+.|+++++... .+...+. +.|+.|++++|..
T Consensus 339 ~LP~~l~~sL~~L~Ls~N~-L~~L-P~~l---p~~L~~LdLs~N~Lt--~LP~~l~--~sL~~LdLs~N~L 400 (754)
T PRK15370 339 SLPASLPPELQVLDVSKNQ-ITVL-PETL---PPTITTLDVSRNALT--NLPENLP--AALQIMQASRNNL 400 (754)
T ss_pred cCChhhcCcccEEECCCCC-CCcC-Chhh---cCCcCEEECCCCcCC--CCCHhHH--HHHHHHhhccCCc
Confidence 2221234678888888774 3311 0111 357888888773321 1111110 2466666666654
No 171
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.39 E-value=0.021 Score=57.96 Aligned_cols=183 Identities=20% Similarity=0.048 Sum_probs=107.8
Q ss_pred ccCchhHHHHHHHHHHHHhhcCCCCcccchhhhcc--ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhh-HHHHHHCC
Q 048757 495 SFMFEGVQEQAARALANLVAHGDSNSNNAAVGLET--GALEALVQLTFSKHEGVRQEAAGALWNLSFDDRN-REAIAAAG 571 (864)
Q Consensus 495 ~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~-~~~i~~~~ 571 (864)
++.+.+.+..++.-|..+...+. .......+.+. ..+..+...+.+....+...|+.++..++..-.. -.... ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~-~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNA-PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 33567888899999999987641 11122221110 3344566666666778899999999998765322 11122 23
Q ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc-cHH
Q 048757 572 GVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG-NAL 650 (864)
Q Consensus 572 ~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~~~ 650 (864)
.++.|++.+.+ +...++..|..+|..+...-.....+ ..+.+.....+.++.+|..++..+..+...-+ ...
T Consensus 95 ~l~~Ll~~~~~---~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 95 LLPPLLKKLGD---SKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHGGG------HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHcc---ccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 57778887776 78899999999999877653311111 14556667788999999999999999876332 111
Q ss_pred HHHh----CCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcC
Q 048757 651 CIVE----GGGVQALIHLCSSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 651 ~i~~----~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
.+.. ...++.+...+.+++ +.+|..|-.++..+...
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~~-~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDAD-PEVREAARECLWALYSH 207 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHH
Confidence 1111 346778888998986 88999988888766443
No 172
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.37 E-value=0.011 Score=50.15 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHH--ccCCHHHHHHHHHHHHHhcC-CCCcHHHHHh
Q 048757 374 LQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLA--RSTNRLVAEEVVGGLWNLSV-GEDHKGAIAR 438 (864)
Q Consensus 374 ~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL--~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~ 438 (864)
++...++.+++|+. ++.++..+.+.||++.++... .+.+|.+++.|..++.+|+. +++++..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45678899999998 679999999999999999976 45689999999999999987 5677777754
No 173
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.35 E-value=0.18 Score=48.74 Aligned_cols=92 Identities=11% Similarity=0.074 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCc-
Q 048757 322 QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGG- 400 (864)
Q Consensus 322 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~- 400 (864)
++.+|-.+..+++.|+..-.+ + -...++.+...|+++++.+|..|+.+|.+|...+-.+. .|.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----------~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l 64 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----------L-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQL 64 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----------H-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhh
Confidence 578999999999998854432 1 25568899999999999999999999999877542211 122
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 048757 401 IDILADLARSTNRLVAEEVVGGLWNLSVG 429 (864)
Q Consensus 401 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~ 429 (864)
+..++.++.+++++++..|...+..+...
T Consensus 65 ~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 65 FSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 36788888999999999999999998764
No 174
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=96.32 E-value=0.54 Score=55.53 Aligned_cols=262 Identities=16% Similarity=0.149 Sum_probs=151.6
Q ss_pred HhCCHHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHH
Q 048757 356 RHGGVRLLLDLARS-----PPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARS-----TNRLVAEEVVGGLWN 425 (864)
Q Consensus 356 ~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~ 425 (864)
+..+.++.++-|.+ .+++.....+.+ +.+.||+..++.++.+ .........+..|..
T Consensus 82 ~geAtE~~v~~l~~~~~~~~d~e~~~~~~~v-------------~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~ 148 (802)
T PF13764_consen 82 DGEATEEFVESLEDDSEEEEDPEQEFKIASV-------------LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRY 148 (802)
T ss_pred CCccchhhHhhccCccccccCHHHHHHHHHH-------------hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHH
Confidence 34556666666654 233444433333 4458999999998864 345677778899999
Q ss_pred hcCCCCcHHHHHhhCcHHHHHHHHccc-CCCC----HHHHHHHHHHHHHhcCCCcc---h--HHHHhcC-----c---HH
Q 048757 426 LSVGEDHKGAIARAGGIKALVDLIFKW-SSWN----DGVLERAAGALANLAADDKC---S--LEVARAG-----G---VH 487 (864)
Q Consensus 426 Ls~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~----~~v~~~a~~~L~~L~~~~~~---~--~~i~~~~-----~---i~ 487 (864)
++..+.+|+++.+.|+++.|++.+... ..+. ..+-+....++-.+...... . ....... . +.
T Consensus 149 c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~ 228 (802)
T PF13764_consen 149 CCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVE 228 (802)
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHH
Confidence 999999999999999999999988531 1222 45555555555555433211 0 0001111 2 66
Q ss_pred HHHHHHHcc---CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC------------CCHHHHHHHHH
Q 048757 488 ALVMLARSF---MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS------------KHEGVRQEAAG 552 (864)
Q Consensus 488 ~Lv~ll~~~---~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~------------~~~~v~~~a~~ 552 (864)
.|++.+.+. .++.+....++.|-.|+.. +++ .+..|++.++. ++..+ .+.
T Consensus 229 ~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G---~~e---------~m~~Lv~~F~p~l~f~~~D~~~~~~~~~---~Le 293 (802)
T PF13764_consen 229 MLLERLNSPFVRSNPQILQALARILPFLTYG---NEE---------KMDALVEHFKPYLDFDKFDEEHSPDEQF---KLE 293 (802)
T ss_pred HHHHHhcCccccCCHHHHHHHHHHhhHHhcC---CHH---------HHHHHHHHHHHhcChhhcccccCchHHH---HHH
Confidence 666666543 2467778888999999874 222 23334433221 11222 233
Q ss_pred HHHHhcC----Ch---hhHHHHHHCCChHHHHHHHHhcCC-----CCHHHHH--------HHHHHHHHhccCchhhHHhh
Q 048757 553 ALWNLSF----DD---RNREAIAAAGGVEALVALVRSCSS-----SSQGLQE--------RAAGALWGLSLSEANSIAIG 612 (864)
Q Consensus 553 ~L~~Ls~----~~---~~~~~i~~~~~i~~Lv~lL~~~~~-----~~~~v~~--------~A~~aL~~L~~~~~~~~~i~ 612 (864)
.+..++. +. .-++.|++.|.++..++.|....+ .+++.+. .++..|..|+......+.+.
T Consensus 294 ~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~ 373 (802)
T PF13764_consen 294 CFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLI 373 (802)
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHH
Confidence 3444433 32 348899999999999998886332 2333333 46777777777644444445
Q ss_pred hcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCc
Q 048757 613 REGGVAPLIALARS--AVVDVHETAAGALWNLAFNP 646 (864)
Q Consensus 613 ~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~L~~~~ 646 (864)
..+++ +++.-|.. .+..+-.-|=..|-.|..++
T Consensus 374 ~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 374 AEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 56666 44444432 22333333444444444333
No 175
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.30 E-value=0.078 Score=48.85 Aligned_cols=123 Identities=12% Similarity=0.116 Sum_probs=98.2
Q ss_pred HHHHHhcCcHHHHHHHHccCC------HHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHH
Q 048757 392 AKAVSENGGIDILADLARSTN------RLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAG 465 (864)
Q Consensus 392 ~~~i~~~g~i~~Lv~lL~~~~------~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~ 465 (864)
..++...+|++.|+++++++. .++...++.++..|.+..-..........|..++..+.. +..+..+...+..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~-~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS-SAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc-ccccchHHHHHHH
Confidence 356888999999999998765 367888999999998876666667777788999999985 3346789999999
Q ss_pred HHHHhcCCCcc-hHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcC
Q 048757 466 ALANLAADDKC-SLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHG 516 (864)
Q Consensus 466 ~L~~L~~~~~~-~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~ 516 (864)
+|-++..+++. ...+.+.=.++.|+..++. ++++++..+...+-.|-...
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~-~~~~iq~naiaLinAL~~kA 133 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQV-SNQEIQTNAIALINALFLKA 133 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHc-CCHHHHHHHHHHHHHHHhcC
Confidence 99999998775 4444455569999999999 57899998888777776653
No 176
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.054 Score=61.68 Aligned_cols=225 Identities=16% Similarity=0.096 Sum_probs=150.1
Q ss_pred cCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH-HhcCCCcchHHHHhcCcHHHHHHHHHccCchhH-HHH
Q 048757 427 SVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA-NLAADDKCSLEVARAGGVHALVMLARSFMFEGV-QEQ 504 (864)
Q Consensus 427 s~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~-~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v-~~~ 504 (864)
+..+..+...++.|+...|+.+... ..++.+..+..+|. .+....+ .....++.+...+.... ... ...
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~---q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~-~~~en~E 561 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQ---QFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDE-KGLENFE 561 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHH---hchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhH-HHHHHHH
Confidence 4455667777889999999998864 45566666677776 2222221 12234556666655421 221 235
Q ss_pred HHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhh-HHHHHHC-CChHHHHHHHHh
Q 048757 505 AARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRN-REAIAAA-GGVEALVALVRS 582 (864)
Q Consensus 505 a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~-~~~i~~~-~~i~~Lv~lL~~ 582 (864)
++.++.||++. +...+..+...-+++.+-.++...++..+.+++..+.||..++.. ...+++. ...+.....+..
T Consensus 562 ~L~altnLas~---s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 562 ALEALTNLASI---SESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred HHHHhhcccCc---chhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence 88999999986 445566677777777777778888999999999999999988764 5556663 345555555554
Q ss_pred cCCCCHHHHHHHHHHHHHhccC-chhhH-HhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHH
Q 048757 583 CSSSSQGLQERAAGALWGLSLS-EANSI-AIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQ 659 (864)
Q Consensus 583 ~~~~~~~v~~~A~~aL~~L~~~-~~~~~-~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~ 659 (864)
..+....++++++.-+... +..+. ......+...++.++.+++++++........|+.. ..+....+.+...++
T Consensus 639 ---~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~ 715 (748)
T KOG4151|consen 639 ---ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVME 715 (748)
T ss_pred ---hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHH
Confidence 6777778888888855544 44444 33446788899999999999999988877777543 334444555555555
Q ss_pred HHHHHhc
Q 048757 660 ALIHLCS 666 (864)
Q Consensus 660 ~L~~ll~ 666 (864)
.+..+-.
T Consensus 716 ~l~~~~~ 722 (748)
T KOG4151|consen 716 LLSGLQK 722 (748)
T ss_pred HHHHHHH
Confidence 5554443
No 177
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.24 E-value=0.84 Score=48.52 Aligned_cols=204 Identities=13% Similarity=0.081 Sum_probs=144.2
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chH----HHHhcCcHHHHHHHHHccCchhHHHHHHHHHH
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSL----EVARAGGVHALVMLARSFMFEGVQEQAARALA 510 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~----~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~ 510 (864)
+...+.+..|+..|. .-+-+.+..++.+..++.+... .+. ..........+..++...+.+++-..+-..|+
T Consensus 72 i~~~dll~~Li~~L~---~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLP---KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHTHHHHHHHTGG---GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHHhh---hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHH
Confidence 456678888888775 4677888899999999887643 221 12223334555556666666787788888888
Q ss_pred HHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHh-cCChhhHHHHHHC---CChHHHHHHHHhcCCC
Q 048757 511 NLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNL-SFDDRNREAIAAA---GGVEALVALVRSCSSS 586 (864)
Q Consensus 511 ~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L-s~~~~~~~~i~~~---~~i~~Lv~lL~~~~~~ 586 (864)
.... .+.....+.....+..+.+..+.++-++...|..++..+ ..+.......... ..+.....+|.+ +
T Consensus 149 ec~k----~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s---~ 221 (335)
T PF08569_consen 149 ECIK----HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLES---S 221 (335)
T ss_dssp HHTT----SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT----S
T ss_pred HHHh----hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccC---C
Confidence 8887 455566777788888899999999999999999999874 4555443333332 346677778876 8
Q ss_pred CHHHHHHHHHHHHHhccCchhhHH----hhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccH
Q 048757 587 SQGLQERAAGALWGLSLSEANSIA----IGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNA 649 (864)
Q Consensus 587 ~~~v~~~A~~aL~~L~~~~~~~~~----i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~ 649 (864)
+--++..++..|+.+-.+..+... +.+..-+..++.+|++.+..++..|-.++.-+..+|...
T Consensus 222 NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~ 288 (335)
T PF08569_consen 222 NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKP 288 (335)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-B
T ss_pred CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCC
Confidence 999999999999999887665433 344667889999999999999999999999888766533
No 178
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.21 E-value=5 Score=49.61 Aligned_cols=104 Identities=12% Similarity=0.118 Sum_probs=70.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-Cc
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DS 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~ 389 (864)
+..++..|..+...+|..|..+|.++...|..- +....+-..+-.-+.+....||+.|+..++.... .+
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v----------L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~ 887 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSV----------LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP 887 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh----------hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH
Confidence 566777788788999999999999998666421 2233334445555667788999999999997433 44
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG 429 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~ 429 (864)
+.-.++. +.+..-..+....||.++.+++..++..
T Consensus 888 e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 888 ELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEE 922 (1692)
T ss_pred HHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHh
Confidence 4333322 1233334466777888888888888763
No 179
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.20 E-value=0.23 Score=52.51 Aligned_cols=167 Identities=19% Similarity=0.160 Sum_probs=111.5
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC--CchhH
Q 048757 315 LSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV--DSKVA 392 (864)
Q Consensus 315 ~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~--~~~~~ 392 (864)
+..+++.++.+|+.|..+||-.+.-+.+. ....++.+...++.+++.++..|+.++..+.. ..+.-
T Consensus 33 ~P~v~~~~~~vR~~al~cLGl~~Lld~~~------------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 33 LPAVQSSDPAVRELALKCLGLCCLLDKEL------------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhChHH------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 36778999999999999999998777532 13456778888877899999999999998755 22211
Q ss_pred HH-------HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccC-CCCHHHHHHHH
Q 048757 393 KA-------VSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWS-SWNDGVLERAA 464 (864)
Q Consensus 393 ~~-------i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~~~v~~~a~ 464 (864)
.. ......+..+.+.+.+.+++++..|++.+.+|--...... ....+..|+-+-.+.. .++..++..-.
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 11 1223346677788888899999999999999854322211 1234445544443322 23346665555
Q ss_pred HHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc
Q 048757 465 GALANLAADDKCSLEVARAGGVHALVMLARSF 496 (864)
Q Consensus 465 ~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~ 496 (864)
..+-..+......+.......++.+..+.+..
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 56666666666455666677788877777664
No 180
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.20 E-value=0.074 Score=53.87 Aligned_cols=179 Identities=18% Similarity=0.101 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHHhcCCC---cchHHHHh--cCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhc
Q 048757 454 SWNDGVLERAAGALANLAADD---KCSLEVAR--AGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLE 528 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~---~~~~~i~~--~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~ 528 (864)
+.+-+.+..+...|..+.... .....+.. ...+..+...+.+. ...+...|+.++..++..- .....-.-
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l----~~~~~~~~ 92 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQL----GSHFEPYA 92 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHH----GGGGHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHH----hHhHHHHH
Confidence 455667777777777776544 12222211 13344555555553 3567788899999988742 11111123
Q ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch-h
Q 048757 529 TGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA-N 607 (864)
Q Consensus 529 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~-~ 607 (864)
...++.|+..+.+.+..++..|..+|..+.........+ ..+.+..... +.++.+|..++..+..+..... .
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~---~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLK---SKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT----S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHccch
Confidence 457888999998988999999999999997653311101 0233444444 4899999999999998876522 2
Q ss_pred hHHhhh----cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 608 SIAIGR----EGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 608 ~~~i~~----~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
...+.. ...++.+..++.+++++||..|-.++..+..
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 222222 3467788899999999999999999999964
No 181
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.19 E-value=0.00086 Score=51.75 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=28.6
Q ss_pred cCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCCcCEEEEeCC
Q 048757 108 PKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSSVRYLSIAGT 166 (864)
Q Consensus 108 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~L~~L~l~~c 166 (864)
|+|++|++++|. ++.-. .....++++|++|++++|.- +.+..+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~-~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIP-PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEEC-TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCC-CCccC-HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 456666666653 33110 11234456666666665431 22233346666666666665
No 182
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.09 E-value=0.059 Score=49.63 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=95.9
Q ss_pred hhhhccChHHHHHHHhcCCC------HHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHH
Q 048757 524 AVGLETGALEALVQLTFSKH------EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGA 597 (864)
Q Consensus 524 ~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~a 597 (864)
..++..+|+..|+++.++.. .++...+..++..|-.+...-....+...|...+..+.. +..++.+.+.|..+
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~-~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS-SAMDASILQRSLAI 83 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc-ccccchHHHHHHHH
Confidence 45677789999999998865 367777888888886665544455566678888888885 23378999999999
Q ss_pred HHHhccCc-hhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 598 LWGLSLSE-ANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 598 L~~L~~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
|-++..+. .....+.++=.++.|+..|+..+++++.+|...+..|..
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 99999874 446777778889999999999999999999998888865
No 183
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.08 E-value=0.046 Score=52.83 Aligned_cols=125 Identities=16% Similarity=0.076 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHhcCChhhHHHHHHC----------------CChHHHHHHHHh---cCCCCHHHHHHHHHHHHHhc
Q 048757 542 KHEGVRQEAAGALWNLSFDDRNREAIAAA----------------GGVEALVALVRS---CSSSSQGLQERAAGALWGLS 602 (864)
Q Consensus 542 ~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~----------------~~i~~Lv~lL~~---~~~~~~~v~~~A~~aL~~L~ 602 (864)
++......++.+|.|++..+.....+.+. ..+..|++.+.. .......-....+.++.|++
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 34446677888999999988776655432 246677776654 11123445678899999999
Q ss_pred cCchhhHHhhhc--CC--HHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCC---cHHHHHHHhc
Q 048757 603 LSEANSIAIGRE--GG--VAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGG---GVQALIHLCS 666 (864)
Q Consensus 603 ~~~~~~~~i~~~--~~--i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g---~v~~L~~ll~ 666 (864)
+.++.|..+.+. +. +..|+.+..+.+..=|..+++++.|+|.+.+....+.... .+|.|+--+.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 999999999874 33 6677777777866667789999999999888887777654 3444444443
No 184
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.05 E-value=0.42 Score=50.51 Aligned_cols=193 Identities=17% Similarity=0.071 Sum_probs=113.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc--CcHHHHHHHHccCCHHHHHHHHHHHHHhcCC---CCcHH
Q 048757 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSEN--GGIDILADLARSTNRLVAEEVVGGLWNLSVG---EDHKG 434 (864)
Q Consensus 360 i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~---~~~~~ 434 (864)
+...+..+.+.....|..++..+.++.........+.+. ..+..+.+.++.+..+-+..|+.++.-++.. .+...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 344555566667888899999888876533222222211 2366677777777666666777777776543 23344
Q ss_pred HHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHH-hcCcHHHHHH--HHHc---------cCchhH
Q 048757 435 AIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVA-RAGGVHALVM--LARS---------FMFEGV 501 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~-~~~~i~~Lv~--ll~~---------~~~~~v 501 (864)
.+.+. ..|.|.+.+.+ .+....++..++.+|+-++.-.. ....+. -...+..+.. ..+. .+++.+
T Consensus 125 ei~~~-~~~~L~~~l~d-~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 125 EIFEE-LKPVLKRILTD-SSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHH-HHHHHHHHHhC-CccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 44443 67888888876 24455677777767766654211 111110 0011111111 1111 123567
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 048757 502 QEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNL 557 (864)
Q Consensus 502 ~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 557 (864)
...|+.+..-|...- +.....-.-...++.|..+|.+.+.+||.+|..+|+-|
T Consensus 203 ~~aAL~aW~lLlt~~---~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 203 VAAALSAWALLLTTL---PDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 888888888887642 22111112245789999999999999999999998876
No 185
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=1.1 Score=54.99 Aligned_cols=271 Identities=18% Similarity=0.071 Sum_probs=137.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcH---HHH
Q 048757 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHK---GAI 436 (864)
Q Consensus 360 i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~---~~i 436 (864)
||.|.+.=-+++..+|.....+-..|..++.....-.-...+..|+.-|.+..-.+|+.++-+|..|-..+++- +.+
T Consensus 1000 IPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l 1079 (1702)
T KOG0915|consen 1000 IPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL 1079 (1702)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 34444443478888888777766667776533222222344566676677778889999999999997755432 222
Q ss_pred HhhCcHHHHHHHHcccCCCCHHHHHHH---HHHHHHhcCC--CcchHHHHhcCcHHHHHHHHHc----cCchhHHHHHHH
Q 048757 437 ARAGGIKALVDLIFKWSSWNDGVLERA---AGALANLAAD--DKCSLEVARAGGVHALVMLARS----FMFEGVQEQAAR 507 (864)
Q Consensus 437 ~~~g~i~~L~~lL~~~~~~~~~v~~~a---~~~L~~L~~~--~~~~~~i~~~~~i~~Lv~ll~~----~~~~~v~~~a~~ 507 (864)
-+ ....+.+.+. +-.+.||+.| +.+|..++.. +.... ......+..++..+-+ ++.+++|..++.
T Consensus 1080 pe--lw~~~fRvmD---DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~-~~~~~~l~~iLPfLl~~gims~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1080 PE--LWEAAFRVMD---DIKESVREAADKAARALSKLCVRICDVTNG-AKGKEALDIILPFLLDEGIMSKVNEVRRFSIG 1153 (1702)
T ss_pred HH--HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcccCCc-ccHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 21 2333334443 2345566544 4555555432 11000 0001112233333322 256899999999
Q ss_pred HHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHH-HHHHHH----------HH-HhcCChhhHHHH---HH---
Q 048757 508 ALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVR-QEAAGA----------LW-NLSFDDRNREAI---AA--- 569 (864)
Q Consensus 508 aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~-~~a~~~----------L~-~Ls~~~~~~~~i---~~--- 569 (864)
++..|+.+.. ...+. .-...++.|++....-.+.+. ..++++ ++ +.+.+.+.-+.| ++
T Consensus 1154 tl~dl~Kssg--~~lkP--~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD 1229 (1702)
T KOG0915|consen 1154 TLMDLAKSSG--KELKP--HFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID 1229 (1702)
T ss_pred HHHHHHHhch--hhhcc--hhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh
Confidence 9999997521 11111 112456666666554333322 222222 22 222222211111 11
Q ss_pred ----CCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 570 ----AGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS--EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 570 ----~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
...+|.+.++++. +-.-..+..++..+..|+.. .+.... -...+..++..+++.++.++..-+.|.+.|+
T Consensus 1230 ~~vLeelip~l~el~R~--sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1230 ISVLEELIPRLTELVRG--SVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred HHHHHHHHHHHHHHHhc--cCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 1245566666664 22233344455555444321 111100 1113445666667888999998888888887
Q ss_pred C
Q 048757 644 F 644 (864)
Q Consensus 644 ~ 644 (864)
.
T Consensus 1306 k 1306 (1702)
T KOG0915|consen 1306 K 1306 (1702)
T ss_pred h
Confidence 6
No 186
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.99 E-value=0.02 Score=48.44 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHc--cCCHHHHHHHHHHHHHhcC-CcccHHHHHh
Q 048757 590 LQERAAGALWGLSLS-EANSIAIGREGGVAPLIALAR--SAVVDVHETAAGALWNLAF-NPGNALCIVE 654 (864)
Q Consensus 590 v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~ 654 (864)
.+...+.+|+|++-. +.++..+.+.|+++.+++... +.+|.+++.|..++++|+. +++|+..|.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 356678899999865 888999999999999999864 5679999999999999998 7788876664
No 187
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.25 Score=55.74 Aligned_cols=259 Identities=13% Similarity=0.116 Sum_probs=141.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHH
Q 048757 366 LARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKAL 445 (864)
Q Consensus 366 lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L 445 (864)
=|+++++-+|-..++.|..|-..+ +. ..-+|.+...|++.+..||++|.-++..+=... ..+ -..+-..+
T Consensus 107 DLQHPNEyiRG~TLRFLckLkE~E-----Ll-epl~p~IracleHrhsYVRrNAilaifsIyk~~---~~L-~pDapeLi 176 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKLKEPE-----LL-EPLMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHL-IPDAPELI 176 (948)
T ss_pred hccCchHhhcchhhhhhhhcCcHH-----Hh-hhhHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhh-cCChHHHH
Confidence 367888888888888888753321 11 233566667788999999999998887764321 001 11122333
Q ss_pred HHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccC--chhHHHHHHHHHHHHhhcCCCCcccc
Q 048757 446 VDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFM--FEGVQEQAARALANLVAHGDSNSNNA 523 (864)
Q Consensus 446 ~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~--~~~v~~~a~~aL~~L~~~~~~~~~~~ 523 (864)
-+.|.. ..++..+++|.-.|...- ...++..|..-..+-+ ++.++...++-++..+.. ++..
T Consensus 177 ~~fL~~--e~DpsCkRNAFi~L~~~D----------~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~---~p~~- 240 (948)
T KOG1058|consen 177 ESFLLT--EQDPSCKRNAFLMLFTTD----------PERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA---NPAE- 240 (948)
T ss_pred HHHHHh--ccCchhHHHHHHHHHhcC----------HHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc---CHHH-
Confidence 344443 455666777776654431 1122222222222111 245566666666666653 2222
Q ss_pred hhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHH--------HHHC---C----ChHHHHHH---------
Q 048757 524 AVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREA--------IAAA---G----GVEALVAL--------- 579 (864)
Q Consensus 524 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~--------i~~~---~----~i~~Lv~l--------- 579 (864)
+...+..+..+|.+.++.++.+|+++|..++.++..... +... + ....|..+
T Consensus 241 ----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~ 316 (948)
T KOG1058|consen 241 ----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQ 316 (948)
T ss_pred ----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHH
Confidence 234567888888888888888888888887776543111 1110 0 01111111
Q ss_pred ------HHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHh
Q 048757 580 ------VRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS-----------AVVDVHETAAGALWNL 642 (864)
Q Consensus 580 ------L~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~~L 642 (864)
|+-.++++-+++..+...... +....-+..++.+|+. ++..-|..-..++..+
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ld----------LvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c 386 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALD----------LVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC 386 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHh----------hhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence 111112444444444444443 3334445556666541 2234566677778777
Q ss_pred cC-CcccHHHHHhCCcHHHHHHHhcCCC
Q 048757 643 AF-NPGNALCIVEGGGVQALIHLCSSSL 669 (864)
Q Consensus 643 ~~-~~~~~~~i~~~g~v~~L~~ll~~~~ 669 (864)
+. +|+.. +.+|+.|++.+.+.+
T Consensus 387 av~Fp~~a-----atvV~~ll~fisD~N 409 (948)
T KOG1058|consen 387 AVKFPEVA-----ATVVSLLLDFISDSN 409 (948)
T ss_pred hhcChHHH-----HHHHHHHHHHhccCC
Confidence 76 45433 356789999998887
No 188
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.95 E-value=3.3 Score=46.14 Aligned_cols=344 Identities=18% Similarity=0.087 Sum_probs=188.9
Q ss_pred HHHHHHHccCCH---HHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 048757 312 TLLLSLMESSQQ---EVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 312 ~~L~~lL~~~~~---~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~ 387 (864)
|.++..|.+.++ ...+.+..+|..++...+ ..+.+. ...+..+-...+. .+.+.....+.+|.++..
T Consensus 2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~--------i~~~~~-~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~ 72 (415)
T PF12460_consen 2 PALLALLPDSDSSTDSNYERILEALAALSTSPQ--------ILETLS-IRLLNKLSIVCQSESSSDYCHAILSTLQSLLE 72 (415)
T ss_pred chHHhhCCCCCCcchhHHHHHHHHHHHHHCChh--------HHHHHH-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 567777765443 566788888888874442 111111 1223333333322 255666677777777655
Q ss_pred Cc---h---hHHHHHhcCcHHHHHHHHcc-----C--CHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcc-
Q 048757 388 DS---K---VAKAVSENGGIDILADLARS-----T--NRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFK- 451 (864)
Q Consensus 388 ~~---~---~~~~i~~~g~i~~Lv~lL~~-----~--~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~- 451 (864)
.. . .-....+...++.+.++.-. . ++.+...+..++..+.. +++.+..+.+ .+..++..
T Consensus 73 ~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-----~~~~lf~~~ 147 (415)
T PF12460_consen 73 KKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-----ELYSLFLSP 147 (415)
T ss_pred hcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-----HHHHHHccc
Confidence 22 1 22233334467777776521 1 24555666666555533 3444444432 33333320
Q ss_pred -----c---CC----CCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCC
Q 048757 452 -----W---SS----WNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSN 519 (864)
Q Consensus 452 -----~---~~----~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~ 519 (864)
. .. .......-...++..+-.+-... .....+..++.+..+.+++..+..++.+++.+...-...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~---~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~ 224 (415)
T PF12460_consen 148 KSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP---DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDD 224 (415)
T ss_pred cccCCCCccccccccccccHHHHHHHHHHcCCcccCcc---CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCh
Confidence 0 00 11122222334444443332211 111256777888777666888889999999888642111
Q ss_pred cccchhhhccChHHHHHHHh-cCCCHHHHHHHHHHHHHhcCChhhHHHHHH-----CCChHHHHHHHHhcCCCCHHHHHH
Q 048757 520 SNNAAVGLETGALEALVQLT-FSKHEGVRQEAAGALWNLSFDDRNREAIAA-----AGGVEALVALVRSCSSSSQGLQER 593 (864)
Q Consensus 520 ~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~-----~~~i~~Lv~lL~~~~~~~~~v~~~ 593 (864)
+ .-...+..+.... ....+..+..+..++..++. ..+.+ ...++.|++++. ++++...
T Consensus 225 ~------~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~K-----aLv~R~~~~~~~~~~~L~~lL~-----~~~~g~~ 288 (415)
T PF12460_consen 225 D------DLDEFLDSLLQSISSSEDSELRPQALEILIWITK-----ALVMRGHPLATELLDKLLELLS-----SPELGQQ 288 (415)
T ss_pred h------hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHH-----HHHHcCCchHHHHHHHHHHHhC-----ChhhHHH
Confidence 1 0012333333333 23344445555555544321 11111 123566777665 4778888
Q ss_pred HHHHHHHhccC-chh--------hHHhhhcC----CHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHh-CCcHH
Q 048757 594 AAGALWGLSLS-EAN--------SIAIGREG----GVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVE-GGGVQ 659 (864)
Q Consensus 594 A~~aL~~L~~~-~~~--------~~~i~~~~----~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~-~g~v~ 659 (864)
|+.++.-+..+ +.. -+.+.++. .+|.|++-.+..+...+..-..||.++..+.+.....-+ ...+|
T Consensus 289 aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlP 368 (415)
T PF12460_consen 289 AAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLP 368 (415)
T ss_pred HHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 99999888765 322 12223322 457777777777777888899999999886664433322 34688
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 660 ALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 660 ~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
.|++-|..++ +.++..+..+|..+....+
T Consensus 369 LLlqsL~~~~-~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 369 LLLQSLSLPD-ADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHhCCCC-HHHHHHHHHHHHHHHHcCH
Confidence 8899997776 7799999999988877765
No 189
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=2 Score=49.29 Aligned_cols=257 Identities=14% Similarity=0.139 Sum_probs=146.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-ch
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD-SK 390 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~ 390 (864)
+-+=.++.+..+-+..+|+.++.++..... ..+. .++..|--+++++.+.+|..|.++|..++.. |+
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~~----------r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTNS----------RELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccCH----------hhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 445556677888999999999988763332 1121 2677777788999999999999999998762 31
Q ss_pred --------hHHHHHhcCc---HHHHHHHHccCCHH----HHHHHHHHHHHhcCCCC--cHHHH---------HhhCcHHH
Q 048757 391 --------VAKAVSENGG---IDILADLARSTNRL----VAEEVVGGLWNLSVGED--HKGAI---------ARAGGIKA 444 (864)
Q Consensus 391 --------~~~~i~~~g~---i~~Lv~lL~~~~~~----v~~~a~~aL~~Ls~~~~--~~~~i---------~~~g~i~~ 444 (864)
.-..+-+..- -..+..+|+.+... +.........+++..-. ..+.+ ...+.+..
T Consensus 316 ~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~F 395 (865)
T KOG1078|consen 316 AVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNF 395 (865)
T ss_pred cccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHH
Confidence 1122221111 12233344443322 22333333333332110 00000 12344555
Q ss_pred HHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccch
Q 048757 445 LVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAA 524 (864)
Q Consensus 445 L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~ 524 (864)
|..+|++ ++.-+.+.....++..+....... +..+...|...+.++ +...-+...|..|...+...+
T Consensus 396 L~~~Lr~--eGg~e~K~aivd~Ii~iie~~pds----Ke~~L~~LCefIEDc---e~~~i~~rILhlLG~EgP~a~---- 462 (865)
T KOG1078|consen 396 LSNMLRE--EGGFEFKRAIVDAIIDIIEENPDS----KERGLEHLCEFIEDC---EFTQIAVRILHLLGKEGPKAP---- 462 (865)
T ss_pred HHHHHHh--ccCchHHHHHHHHHHHHHHhCcch----hhHHHHHHHHHHHhc---cchHHHHHHHHHHhccCCCCC----
Confidence 6666664 455566666666666665533321 223456666666654 334556677777776433221
Q ss_pred hhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 048757 525 VGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLS 602 (864)
Q Consensus 525 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~ 602 (864)
.....+....+...-.+..+|.+|+.+|.++....+.- .....-.|.+.+.+ .+.++|..|...|.++-
T Consensus 463 --~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l----~~sI~vllkRc~~D---~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 463 --NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL----LPSILVLLKRCLND---SDDEVRDRATFYLKNLE 531 (865)
T ss_pred --CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc----cccHHHHHHHHhcC---chHHHHHHHHHHHHHhh
Confidence 12233444555444467789999999999997443220 11223345555655 89999999999998876
No 190
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.58 Score=52.91 Aligned_cols=240 Identities=19% Similarity=0.136 Sum_probs=138.3
Q ss_pred cHHHHHHHHccC-CHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHH-HHHHHHHHHhcCCCcch
Q 048757 400 GIDILADLARST-NRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVL-ERAAGALANLAADDKCS 477 (864)
Q Consensus 400 ~i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~-~~a~~~L~~L~~~~~~~ 477 (864)
..+.|.+.|++. ++.++.-++--|+-......+++ .-..+-..+.. +..+. +.|....+-+-....+.
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~e------iYe~lKevLy~----D~AvsGEAAgi~MGl~mlGt~~~ 483 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANEE------IYEKLKEVLYN----DSAVSGEAAGIAMGLLMLGTANQ 483 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhcccccHH------HHHHHHHHHhc----cchhhhhHHHHhhhhHhhCcCcH
Confidence 466777777654 55566666655554433332222 23445556653 33333 33333333332222222
Q ss_pred HHHHhcCcHHHHHHHHHccCchhHHHHHHH--HHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHH
Q 048757 478 LEVARAGGVHALVMLARSFMFEGVQEQAAR--ALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALW 555 (864)
Q Consensus 478 ~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~--aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 555 (864)
+ ++.-++........+.+++...- +|....+ +.++=+.+-+++.+.++-+|...+-++.
T Consensus 484 e------aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr-------------qe~Ad~lI~el~~dkdpilR~~Gm~t~a 544 (929)
T KOG2062|consen 484 E------AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR-------------QEDADPLIKELLRDKDPILRYGGMYTLA 544 (929)
T ss_pred H------HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh-------------hhhhHHHHHHHhcCCchhhhhhhHHHHH
Confidence 2 23344445444333444333222 2222222 2234344456777888888877665554
Q ss_pred HhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHH-ccCCHHHHHH
Q 048757 556 NLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALA-RSAVVDVHET 634 (864)
Q Consensus 556 ~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~v~~~ 634 (864)
- +.... .+.++|..|+..--+ ..+.+||+.|+-+|+-.+..+ ...++..+.+| .+.++.||..
T Consensus 545 l-Ay~GT-----gnnkair~lLh~aVs--D~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses~N~HVRyG 608 (929)
T KOG2062|consen 545 L-AYVGT-----GNNKAIRRLLHVAVS--DVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSESYNPHVRYG 608 (929)
T ss_pred H-HHhcc-----CchhhHHHhhccccc--ccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhhhcChhhhhh
Confidence 2 11111 123466777776332 389999999999999765432 22456677777 4678999999
Q ss_pred HHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccc
Q 048757 635 AAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMED 691 (864)
Q Consensus 635 a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~ 691 (864)
|+-+|+-.|....+++ ++..|-.+..++. .-||+.|..+++-+.....+.
T Consensus 609 aA~ALGIaCAGtG~~e------Ai~lLepl~~D~~-~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 609 AAMALGIACAGTGLKE------AINLLEPLTSDPV-DFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred HHHHHhhhhcCCCcHH------HHHHHhhhhcChH-HHHHHHHHHHHHHHHHhcccc
Confidence 9999999998887774 4456667777765 779999999888776655533
No 191
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.0035 Score=61.93 Aligned_cols=99 Identities=15% Similarity=0.095 Sum_probs=53.0
Q ss_pred CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEe
Q 048757 109 KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLD 188 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~ 188 (864)
+.++|+..||. ++|- .|++.+|.|+.|.|+-+.--+-..+..|++|+.|.|....--+-.-+.++ .++|+|+.|-
T Consensus 20 ~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YL-knlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYL-KNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCC-ccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHH-hcCchhhhHh
Confidence 45667777776 6663 24556777777777654433334555777777777655322122233444 4566666666
Q ss_pred cCC----CCCCHHHHHHHhcCCCCCcEE
Q 048757 189 TSR----TNINLSSVTRLLSSSRNLKVL 212 (864)
Q Consensus 189 l~~----~~~~~~~l~~~~~~~~~L~~L 212 (864)
+.. ...+...-...+..+|+|+.|
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhc
Confidence 655 222333333333344666665
No 192
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.86 Score=53.94 Aligned_cols=255 Identities=19% Similarity=0.104 Sum_probs=145.8
Q ss_pred cCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcch
Q 048757 398 NGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCS 477 (864)
Q Consensus 398 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~ 477 (864)
++.++.|+..+++.+..++..|++.++.++..-+ ..+++. ++...++++. +-+++..-..++-+|+.|+...-..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~--p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFN--PAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcC--cCCchhHHHHHHHHHHHHHhcCCcc
Confidence 3567778888899999999999999999987433 233332 5666777554 2345566778888898887653311
Q ss_pred HHHHhcCcHHHHHHHHHc-------cCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHH
Q 048757 478 LEVARAGGVHALVMLARS-------FMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEA 550 (864)
Q Consensus 478 ~~i~~~~~i~~Lv~ll~~-------~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 550 (864)
.... ...+|.++..+.- .....+|..|+.+++.+++... +..-+-+...=+-..|+..+-+++-.+|++|
T Consensus 415 ps~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays--~~~l~p~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 415 PSLL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYS--PSDLKPVLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred hHHH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCC--hhhhhHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence 1110 1235555544432 1236789999999999987522 1111111111111223344667788899999
Q ss_pred HHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh-cCCHHHHHHHH-----
Q 048757 551 AGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR-EGGVAPLIALA----- 624 (864)
Q Consensus 551 ~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~-~~~i~~Lv~lL----- 624 (864)
..++-... .+.|-+|.=++++..-.--+-..+.++-..++. .+.+ .|..+++++-|
T Consensus 492 sAAlqE~V---------GR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~---------~ia~~~~y~~~~f~~L~t~Kv 553 (1133)
T KOG1943|consen 492 SAALQENV---------GRQGNFPHGISLISTIDYFSVTNRSNCYLDLCV---------SIAEFSGYREPVFNHLLTKKV 553 (1133)
T ss_pred HHHHHHHh---------ccCCCCCCchhhhhhcchhhhhhhhhHHHHHhH---------HHHhhhhHHHHHHHHHHhccc
Confidence 88887542 222323222233332000222334444444432 2333 34445555444
Q ss_pred ccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048757 625 RSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAY 683 (864)
Q Consensus 625 ~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~ 683 (864)
.+-++.+++.++++|.+|+. .++ ....+.+++|+....+++ ...|.-...+.+.
T Consensus 554 ~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~-~~~r~g~~la~~e 608 (1133)
T KOG1943|consen 554 CHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKD-ASMRHGVFLAAGE 608 (1133)
T ss_pred ccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCC-hHHhhhhHHHHHH
Confidence 34579999999999999875 332 224567888888777765 5566544444443
No 193
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.69 E-value=0.0074 Score=72.51 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=95.3
Q ss_pred HhcCCCCcEEEecCCCCchHHHHh--CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHh
Q 048757 28 SSRCTNLQALWFRGALSADAMIIL--QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAY 105 (864)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~~l~~~--~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~ 105 (864)
..++|.|+.|++++|.....++.. .+-+|++|+++++. ++ .+..-...+++|.+||+ .+..... .+..+..
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~--~LP~~l~~Lk~L~~Lnl--~~~~~l~--~~~~i~~ 639 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-IS--HLPSGLGNLKKLIYLNL--EVTGRLE--SIPGILL 639 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-cc--ccchHHHHHHhhheecc--ccccccc--cccchhh
Confidence 456788999999988765443321 57788888888776 54 22222234556777777 4333221 1223333
Q ss_pred cCcCcCeeeecccC-CCcHHHHHHHHhcCCCccEEeccCCC--------------------------CCCH-HHhcCCCC
Q 048757 106 CCPKLRRLWLSGVR-EVNGDAINALAKQCRQLVEVGFIDSG--------------------------GVDE-AALENLSS 157 (864)
Q Consensus 106 ~~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~c~--------------------------~i~~-~~~~~~~~ 157 (864)
.+++|++|.+.+.. ..+...+..+ .++.+|+.+.+..+. ..+. ..+..+++
T Consensus 640 ~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~ 718 (889)
T KOG4658|consen 640 ELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGN 718 (889)
T ss_pred hcccccEEEeeccccccchhhHHhh-hcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccC
Confidence 46677777665543 2222233333 334444444443321 1111 11126788
Q ss_pred cCEEEEeCCCCCCHHH-----HHHH--HhcCCCCcEEecCC-CCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 158 VRYLSIAGTRNLNWSS-----AAIA--WSKLTSLVGLDTSR-TNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 158 L~~L~l~~c~~~~~~~-----l~~l--~~~~~~L~~L~l~~-~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
|+.|.+.+|....... .... ..++..+...++.+ .+.++. .+ .|+|+.|.+..|+.+++..
T Consensus 719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---~f---~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---LF---APHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---hc---cCcccEEEEecccccccCC
Confidence 9999999886532111 0000 01111222222222 222221 12 3899999999999999887
No 194
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.0033 Score=62.13 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=51.8
Q ss_pred CcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcH-HHHHHHHh
Q 048757 53 ARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNG-DAINALAK 131 (864)
Q Consensus 53 ~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~ 131 (864)
+.+.+.|+..+|. ++|..+. ...|.|+.|.| +. .+|+ ++..+. .|++|++|+|..+. |.+ +-+..+ +
T Consensus 18 l~~vkKLNcwg~~-L~DIsic---~kMp~lEVLsL--Sv-NkIs--sL~pl~-rCtrLkElYLRkN~-I~sldEL~YL-k 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISIC---EKMPLLEVLSL--SV-NKIS--SLAPLQ-RCTRLKELYLRKNC-IESLDELEYL-K 85 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHH---HhcccceeEEe--ec-cccc--cchhHH-HHHHHHHHHHHhcc-cccHHHHHHH-h
Confidence 3466777888886 7776543 46788888888 43 3443 244443 58888888887766 433 334333 4
Q ss_pred cCCCccEEeccCCC
Q 048757 132 QCRQLVEVGFIDSG 145 (864)
Q Consensus 132 ~~~~L~~L~l~~c~ 145 (864)
++|+|+.|.|..++
T Consensus 86 nlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 86 NLPSLRTLWLDENP 99 (388)
T ss_pred cCchhhhHhhccCC
Confidence 57788877776643
No 195
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.55 E-value=0.0029 Score=70.56 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=109.5
Q ss_pred cceeeeecCCCCCHHHHHHHHhC---CCCcceEEeccCCCCCCCHHHHHHHHhcCc----CcCeeeecccCCCcHHHHHH
Q 048757 56 LREINVEFCRELTDAIFSAIVAR---HEMLEILHFGLDVCDRISSDAIKTVAYCCP----KLRRLWLSGVREVNGDAINA 128 (864)
Q Consensus 56 L~~L~l~~c~~l~d~~l~~l~~~---~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~----~L~~L~l~~~~~l~~~~l~~ 128 (864)
+.+|.|.+|. +.+.+...++.. .+.|+.|++ +++ .+++.+...+....+ .|+.|++..|. +++++...
T Consensus 89 l~~L~L~~~~-l~~~~~~~l~~~l~t~~~L~~L~l--~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNR-LGDRGAEELAQALKTLPTLGQLDL--SGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAP 163 (478)
T ss_pred HHHhhhhhCc-cccchHHHHHHHhcccccHhHhhc--ccC-CCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHH
Confidence 8888898887 778777777644 678888888 655 467888888776543 45678888887 77766554
Q ss_pred HHh---cCCCccEEeccCCCCCCHHHhc-------C----CCCcCEEEEeCCCCCCHHHHHHH---HhcCCC-CcEEecC
Q 048757 129 LAK---QCRQLVEVGFIDSGGVDEAALE-------N----LSSVRYLSIAGTRNLNWSSAAIA---WSKLTS-LVGLDTS 190 (864)
Q Consensus 129 l~~---~~~~L~~L~l~~c~~i~~~~~~-------~----~~~L~~L~l~~c~~~~~~~l~~l---~~~~~~-L~~L~l~ 190 (864)
+.. .++.|+.++++.|..+ +.+.. + ..++++|++++|. ++......+ ....+. +..+++.
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~ 241 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLA 241 (478)
T ss_pred HHHHHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHH
Confidence 432 3678888888887654 33222 2 4568888888885 444433332 233444 5557777
Q ss_pred C---CCCCHHHHHHHhcCC-CCCcEEEccCCCCccccc
Q 048757 191 R---TNINLSSVTRLLSSS-RNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 191 ~---~~~~~~~l~~~~~~~-~~L~~L~~~~c~~~~~~~ 224 (864)
. .|.+.+.+.+.+... +.++++++..|+..+.+.
T Consensus 242 ~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~ 279 (478)
T KOG4308|consen 242 SNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGV 279 (478)
T ss_pred hcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccch
Confidence 7 444556666666665 677888888888888776
No 196
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.55 E-value=0.29 Score=55.94 Aligned_cols=220 Identities=16% Similarity=0.066 Sum_probs=146.8
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHH-HhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHH--HHHHH
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLW-NLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGV--LERAA 464 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~-~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v--~~~a~ 464 (864)
...-+...++.|+...|+++.....+..+.....+|. .+....+- ....++++...+.. +... -..+.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~-----~~~v~~~~~s~~~~----d~~~~en~E~L 563 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER-----SYEVVKPLDSALHN----DEKGLENFEAL 563 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc-----hhhhhhhhcchhhh----hHHHHHHHHHH
Confidence 4556667888999999999988888888888888887 44332110 12245555555532 2221 23667
Q ss_pred HHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhc-cChHHHHHHHhcCC
Q 048757 465 GALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLE-TGALEALVQLTFSK 542 (864)
Q Consensus 465 ~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~-~~~i~~L~~lL~~~ 542 (864)
.++.||+..++ .+..+...-+++.+-.++.. +++..|..++..+.||..+ +.-....+.+ ....+.....+...
T Consensus 564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~e-e~~~lqraa~e~~~NLl~~---~~~~e~si~e~~~~l~~w~~~~e~~ 639 (748)
T KOG4151|consen 564 EALTNLASISESDRQKILKEKALGKIEELMTE-ENPALQRAALESIINLLWS---PLLYERSIVEYKDRLKLWNLNLEVA 639 (748)
T ss_pred HHhhcccCcchhhHHHHHHHhcchhhHHHhhc-ccHHHHHHHHHHHHHHHhh---HHHHHHHhhccccCchHHHHHHHhh
Confidence 78888888765 66777777777766666665 5688999999999999985 2223333333 44555555666667
Q ss_pred CHHHHHHHHHHHHHhcCChhh-HH-HHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHH
Q 048757 543 HEGVRQEAAGALWNLSFDDRN-RE-AIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAP 619 (864)
Q Consensus 543 ~~~v~~~a~~~L~~Ls~~~~~-~~-~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~ 619 (864)
++....++++++..++...++ +. ...-..+.+.++.++.+ ++++++...+....|+... .+....+.....++.
T Consensus 640 ~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~---~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~ 716 (748)
T KOG4151|consen 640 DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD---EDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL 716 (748)
T ss_pred hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC---chhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence 777888888888867665443 33 33335678888888887 8999999999998885533 455555555555555
Q ss_pred HHHH
Q 048757 620 LIAL 623 (864)
Q Consensus 620 Lv~l 623 (864)
+..+
T Consensus 717 l~~~ 720 (748)
T KOG4151|consen 717 LSGL 720 (748)
T ss_pred HHHH
Confidence 4444
No 197
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.44 E-value=0.34 Score=56.17 Aligned_cols=141 Identities=16% Similarity=0.027 Sum_probs=100.3
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHH
Q 048757 531 ALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIA 610 (864)
Q Consensus 531 ~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~ 610 (864)
..+.+++...+.|.++++-.---+.+.+...+....+ ++..+.+=++ ++++.+|..|.++++.+-..+
T Consensus 56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNti~kDl~---d~N~~iR~~AlR~ls~l~~~e----- 123 (757)
T COG5096 56 LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNTIQKDLQ---DPNEEIRGFALRTLSLLRVKE----- 123 (757)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHHHHhhcc---CCCHHHHHHHHHHHHhcChHH-----
Confidence 4566777777888888887777777776664432222 2344444444 489999999999998543221
Q ss_pred hhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcC
Q 048757 611 IGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 611 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
.-...++++.+++.++++.||..|+-++.++-. -.+....+.|.+..+..++.+++ |.+..+|..+|..+-..
T Consensus 124 -l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~--ld~~l~~~~g~~~~l~~l~~D~d-P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 124 -LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR--LDKDLYHELGLIDILKELVADSD-PIVIANALASLAEIDPE 196 (757)
T ss_pred -HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh--cCHhhhhcccHHHHHHHHhhCCC-chHHHHHHHHHHHhchh
Confidence 112357888899999999999999999999863 22334556778888889998886 88999999998876554
No 198
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.44 E-value=0.0026 Score=62.81 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcH-HHHHHHH
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNG-DAINALA 130 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~ 130 (864)
.+.+|+.|++.+|.-.|-..+ -.+|+|+.|.+ +..+.--..++..++..||+|++|+++++. +.+ +.+..+.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~----P~Lp~LkkL~l--sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~ 113 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNF----PKLPKLKKLEL--SDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLK 113 (260)
T ss_pred cccchhhhhhhccceeecccC----CCcchhhhhcc--cCCcccccccceehhhhCCceeEEeecCCc-cccccccchhh
Confidence 455666666666653332222 23577888888 422222235677777778888888888876 543 3344443
Q ss_pred hcCCCccEEeccCCCCC--CHH---HhcCCCCcCEEEEeCC
Q 048757 131 KQCRQLVEVGFIDSGGV--DEA---ALENLSSVRYLSIAGT 166 (864)
Q Consensus 131 ~~~~~L~~L~l~~c~~i--~~~---~~~~~~~L~~L~l~~c 166 (864)
. +++|..|++.+|... ++. -+.-+++|++||-..+
T Consensus 114 ~-l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 114 E-LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred h-hcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 3 677888888887532 222 1226677888776544
No 199
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.39 E-value=0.044 Score=46.43 Aligned_cols=68 Identities=16% Similarity=0.071 Sum_probs=50.7
Q ss_pred CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHh
Q 048757 571 GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNL 642 (864)
Q Consensus 571 ~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L 642 (864)
..+++++..+.+ +++.+|..|+.+|++++..........-...+..|.+++.+.++.|+..| ..|-++
T Consensus 27 ~Il~pVL~~~~D---~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDD---QDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 367888888887 99999999999999998653322111224577889999999999988766 555444
No 200
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.39 E-value=1.3 Score=52.42 Aligned_cols=225 Identities=12% Similarity=0.086 Sum_probs=132.9
Q ss_pred HHHhCCHHHHHHHhcC-----CCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHc----cCC----HHHHHHHH
Q 048757 354 ILRHGGVRLLLDLARS-----PPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLAR----STN----RLVAEEVV 420 (864)
Q Consensus 354 i~~~~~i~~L~~lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~----~~~----~~v~~~a~ 420 (864)
+.+.|++..++.++.+ .........+..|..++.-+.+|+++.+.|+++.|+..+. ... +.+.+..+
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 5568999999999875 3345666788888899999999999999999999988763 333 56777777
Q ss_pred HHHHHhcCCCC---cH--HHHHhh--------CcHHHHHHHHccc-CCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcH
Q 048757 421 GGLWNLSVGED---HK--GAIARA--------GGIKALVDLIFKW-SSWNDGVLERAAGALANLAADDKCSLEVARAGGV 486 (864)
Q Consensus 421 ~aL~~Ls~~~~---~~--~~i~~~--------g~i~~L~~lL~~~-~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i 486 (864)
.++..+..... .. ...... .-+..+++.+... ...+..+....+++|-+|+..++.+....-.-+
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~F- 271 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEHF- 271 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHHH-
Confidence 66666532111 10 000111 1255566655531 124578888999999999988764332211111
Q ss_pred HHHHHHHH--ccCchhHHHHHHHHHHHHhhcCCCC---cccchhhhccChHHHHHHHhcCCCH--------HH-------
Q 048757 487 HALVMLAR--SFMFEGVQEQAARALANLVAHGDSN---SNNAAVGLETGALEALVQLTFSKHE--------GV------- 546 (864)
Q Consensus 487 ~~Lv~ll~--~~~~~~v~~~a~~aL~~L~~~~~~~---~~~~~~~~~~~~i~~L~~lL~~~~~--------~v------- 546 (864)
.+.+++=+ ....++ -...+.+++.++..-..+ ...+..+.+.|++...++.+...-+ +-
T Consensus 272 ~p~l~f~~~D~~~~~~-~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 272 KPYLDFDKFDEEHSPD-EQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHhcChhhcccccCch-HHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 11111111 011111 123466666666542212 2457788899999988888764322 21
Q ss_pred -HHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHH
Q 048757 547 -RQEAAGALWNLSFDDRNREAIAAAGGVEALVALVR 581 (864)
Q Consensus 547 -~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~ 581 (864)
...++..|.-|+......+.++..+++ +++..|.
T Consensus 351 sLp~iL~lL~GLa~gh~~tQ~~~~~~~l-~~lH~LE 385 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEPTQLLIAEQLL-PLLHRLE 385 (802)
T ss_pred cHHHHHHHHHHHHhcCHHHHHHHHhhHH-HHHHHhh
Confidence 234666777777765444444555555 3344444
No 201
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.38 E-value=0.58 Score=46.84 Aligned_cols=222 Identities=16% Similarity=0.070 Sum_probs=145.8
Q ss_pred CHHHHHHHHHHHHHhcC-CCCcHHHHH-hhCcHHHHHHHHcc-cCCC-----CH---HHHHHHHHHHHHhcCCCcchHHH
Q 048757 412 NRLVAEEVVGGLWNLSV-GEDHKGAIA-RAGGIKALVDLIFK-WSSW-----ND---GVLERAAGALANLAADDKCSLEV 480 (864)
Q Consensus 412 ~~~v~~~a~~aL~~Ls~-~~~~~~~i~-~~g~i~~L~~lL~~-~~~~-----~~---~v~~~a~~~L~~L~~~~~~~~~i 480 (864)
+++.++.|+.-|..--+ .++....+- ..|.+..|++=+-+ ++.- +. .-..+|...|-.++.+++.+..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 67778887777766543 344444443 44666666554322 2111 11 33456777777888999999999
Q ss_pred HhcCcHHHHHHHHHcc----CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHH
Q 048757 481 ARAGGVHALVMLARSF----MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWN 556 (864)
Q Consensus 481 ~~~~~i~~Lv~ll~~~----~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 556 (864)
.+....-.|..++... +.+.+|..+++.++.|...+ .++....+.+.+.+|..++.++.+++-.+..|..++..
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d--~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTD--DPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT----HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCC--cHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999877777777543 23678889999999998743 55677888899999999999999988888889999988
Q ss_pred hcCChhhHHHHHHC--------CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc--
Q 048757 557 LSFDDRNREAIAAA--------GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS-- 626 (864)
Q Consensus 557 Ls~~~~~~~~i~~~--------~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~-- 626 (864)
+-.++.+...+... .++..++.-+.. .+++.+-....++-..|+.++..|..+.+. +| ..|++
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~--~pS~RLLKhIIrCYlRLsdnprar~aL~~~--LP---~~Lrd~~ 238 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK--QPSPRLLKHIIRCYLRLSDNPRAREALRQC--LP---DQLRDGT 238 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH--S--HHHHHHHHHHHHHHTTSTTHHHHHHHH--S----GGGTSST
T ss_pred HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc--CCChhHHHHHHHHHHHHccCHHHHHHHHHh--Cc---HHHhcHH
Confidence 87777654443221 234444444443 478999999999999999999888877652 11 22332
Q ss_pred ------CCHHHHHHHHHHHHHh
Q 048757 627 ------AVVDVHETAAGALWNL 642 (864)
Q Consensus 627 ------~~~~v~~~a~~aL~~L 642 (864)
+|+.++..-...+.|+
T Consensus 239 f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 239 FSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp TTTGGCS-HHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHh
Confidence 3566776666666655
No 202
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.30 E-value=1.1 Score=43.88 Aligned_cols=151 Identities=18% Similarity=0.057 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHc----cCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHH
Q 048757 459 VLERAAGALANLAADDKCSLEVARAGGVHALVMLARS----FMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEA 534 (864)
Q Consensus 459 v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~----~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~ 534 (864)
-..+|...|-.++..++.+..+.+....-.|-.++.. .+.+.+|..+++.++.|...++ .+....+...++||.
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd--~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDD--QEVIRFLLTTEIVPL 172 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCc--HHHHHHHHHhhhHHH
Confidence 3457777777788888899999988876666666643 3457889999999999998653 456677888999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHC--------CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch
Q 048757 535 LVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAA--------GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA 606 (864)
Q Consensus 535 L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~--------~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~ 606 (864)
.++.++.+++.-+..|..++..+-.++.+-..+... ..+..++.-+.+ .+++.+...+.++..+|+.++.
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~--~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS--MPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhcCCHH
Confidence 999999999999999999999888777654443321 122233333322 4889999999999999999998
Q ss_pred hhHHhhh
Q 048757 607 NSIAIGR 613 (864)
Q Consensus 607 ~~~~i~~ 613 (864)
.|..+..
T Consensus 251 ar~aL~~ 257 (293)
T KOG3036|consen 251 ARAALRS 257 (293)
T ss_pred HHHHHHh
Confidence 8877664
No 203
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.25 E-value=0.063 Score=45.50 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCc
Q 048757 591 QERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLS 670 (864)
Q Consensus 591 ~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~ 670 (864)
|..++.+|...+..-.....-.-...+++++..+.+++..||..|+.+|.|++........-.-....+.|.+++.+++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d- 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD- 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-
Confidence 3445555555543311111122245789999999999999999999999999863332221122456778889998886
Q ss_pred HHHHHHHHHHHHHh
Q 048757 671 KMARFMAALALAYI 684 (864)
Q Consensus 671 ~~~r~~aa~aL~~l 684 (864)
+.||..| ..|-++
T Consensus 82 ~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 82 ENVRSAA-ELLDRL 94 (97)
T ss_pred hhHHHHH-HHHHHH
Confidence 7677644 555443
No 204
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.23 E-value=1.4 Score=50.91 Aligned_cols=387 Identities=13% Similarity=0.086 Sum_probs=196.2
Q ss_pred HHHHHhhCCchhHHHHHhhcHHHHHHHHcc----CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHH
Q 048757 291 LMRISKKNPKEFDDFWLRQGATLLLSLMES----SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDL 366 (864)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~l 366 (864)
++.+++.-.+-+ .++.+.|+..++-++.. .|..+.-.+...++.|+.... ....++..++|..|+..
T Consensus 332 ~l~~lgey~e~l-pv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k--------fa~~fv~~~gi~kll~v 402 (1516)
T KOG1832|consen 332 CLEILGEYVEVL-PVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK--------FAAMFVERRGILKLLAV 402 (1516)
T ss_pred HHHHHHhHHHHH-HHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhH--------HHHHHHHhhhhHHHhcC
Confidence 444555544444 44556776666665532 343344445555555553332 34557778887776654
Q ss_pred hcCCCHHH-HHHHHHHHHHHhCCchhHHHHHh------cCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhh
Q 048757 367 ARSPPEGL-QSEVAKAIANLSVDSKVAKAVSE------NGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARA 439 (864)
Q Consensus 367 L~~~~~~~-~~~a~~~L~~L~~~~~~~~~i~~------~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~ 439 (864)
+.+.. -.....+|+.+......-+.+.. ...+..-+.+|..+...-+.+++..+...-.....-..+-..
T Consensus 403 ---pr~s~~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~ 479 (1516)
T KOG1832|consen 403 ---PRVSETFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQ 479 (1516)
T ss_pred ---CCchhhhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhh
Confidence 33222 22334566666654433222221 223333444555544443333333222221112222333455
Q ss_pred CcHHHHHHHHcccC-----CCC---HH--------HHHHHHHHHHHhcC-----C-CcchHHHHhcCcHHHHHHHHHccC
Q 048757 440 GGIKALVDLIFKWS-----SWN---DG--------VLERAAGALANLAA-----D-DKCSLEVARAGGVHALVMLARSFM 497 (864)
Q Consensus 440 g~i~~L~~lL~~~~-----~~~---~~--------v~~~a~~~L~~L~~-----~-~~~~~~i~~~~~i~~Lv~ll~~~~ 497 (864)
.+++.|+.+++... ..+ ++ .-...+.+|+.--. . +..+..-+..++....+.-+..+.
T Consensus 480 d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~ 559 (1516)
T KOG1832|consen 480 DSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAY 559 (1516)
T ss_pred hHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCC
Confidence 67777777775310 000 01 11122222222111 1 111222233344444444332221
Q ss_pred ch-----hHHHHHHHHHHHHhhcCC----CCcccchhhhccChHHHHHHHhcCC--------CHHHHHHHHHHHHHhcCC
Q 048757 498 FE-----GVQEQAARALANLVAHGD----SNSNNAAVGLETGALEALVQLTFSK--------HEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 498 ~~-----~v~~~a~~aL~~L~~~~~----~~~~~~~~~~~~~~i~~L~~lL~~~--------~~~v~~~a~~~L~~Ls~~ 560 (864)
.| +.-+...+-+..+-..+. ..+.....+.+.+++..++++...+ ..+....|.++|.-+..-
T Consensus 560 ~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i 639 (1516)
T KOG1832|consen 560 KPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI 639 (1516)
T ss_pred CcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec
Confidence 11 111222222222222110 1344455666778888888876532 346778888888888777
Q ss_pred hhhHHHHHHC--------CChHHHHHHHHhc-CCCCHHHHHHHHHHHHHhccCc-hh-----------------------
Q 048757 561 DRNREAIAAA--------GGVEALVALVRSC-SSSSQGLQERAAGALWGLSLSE-AN----------------------- 607 (864)
Q Consensus 561 ~~~~~~i~~~--------~~i~~Lv~lL~~~-~~~~~~v~~~A~~aL~~L~~~~-~~----------------------- 607 (864)
++.+..++.. .++..++..-... +-.+|+++..|+.+|.|+...+ .+
T Consensus 640 P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ 719 (1516)
T KOG1832|consen 640 PDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGT 719 (1516)
T ss_pred chHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCC
Confidence 7777666542 2444444433221 1248999999999999985432 21
Q ss_pred ------------hHHhhhcCCHHHHHHHHccCC-----HHHHHHHHHHHHHhcCCcccHHHHHhCC-----cHHHHHH--
Q 048757 608 ------------SIAIGREGGVAPLIALARSAV-----VDVHETAAGALWNLAFNPGNALCIVEGG-----GVQALIH-- 663 (864)
Q Consensus 608 ------------~~~i~~~~~i~~Lv~lL~~~~-----~~v~~~a~~aL~~L~~~~~~~~~i~~~g-----~v~~L~~-- 663 (864)
...+...+||..|++||+-.. ..+|..|+.+|.-|+.++..+..+.+.- .++.|.+
T Consensus 720 ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~eP 799 (1516)
T KOG1832|consen 720 KSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAEP 799 (1516)
T ss_pred chHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhCc
Confidence 122334678999999998543 5688899999999999998877665533 3444443
Q ss_pred HhcCCCcHHHHH-HHHHHHHHhhcCCc
Q 048757 664 LCSSSLSKMARF-MAALALAYIVDGRM 689 (864)
Q Consensus 664 ll~~~~~~~~r~-~aa~aL~~l~~~~~ 689 (864)
.+.++.+..++. .-|.+|-..+.|.+
T Consensus 800 V~~Dkr~~H~~fck~A~~Ll~~~~g~~ 826 (1516)
T KOG1832|consen 800 VTYDKRHEHLQFCKLASALLKEAQGTP 826 (1516)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhCCc
Confidence 333443344442 23455666667764
No 205
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=3.3 Score=47.13 Aligned_cols=171 Identities=20% Similarity=0.082 Sum_probs=106.9
Q ss_pred cHHHHHHHHHccCchhHHHHHHHHHH--HHhhcCCCCcccchhhhccChHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCh
Q 048757 485 GVHALVMLARSFMFEGVQEQAARALA--NLVAHGDSNSNNAAVGLETGALEALVQL-TFSKHEGVRQEAAGALWNLSFDD 561 (864)
Q Consensus 485 ~i~~Lv~ll~~~~~~~v~~~a~~aL~--~L~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~Ls~~~ 561 (864)
....++.-+....+|-+|.....++. ..... ..++|..|++. ..+.+.+||++|+.+|.-+...+
T Consensus 519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTg------------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTG------------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccC------------chhhHHHhhcccccccchHHHHHHHHHheeeEecC
Confidence 34444444433356777776554433 33321 24677888887 67789999999999999877664
Q ss_pred hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 048757 562 RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWN 641 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~ 641 (864)
+. ..+..+++|.. +.++.||..|+.+|+-.|...-.+.. +..|-.+..++..-||+.|+-++.-
T Consensus 587 p~--------~~~s~V~lLse--s~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 587 PE--------QLPSTVSLLSE--SYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred hh--------hchHHHHHHhh--hcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHH
Confidence 32 45777788876 68999999999999976665443332 2333334456667799999888887
Q ss_pred hcC--CcccHHHHHhCCcHHHHHHHhcCCCc-HHHHHHHHHHHHHhh
Q 048757 642 LAF--NPGNALCIVEGGGVQALIHLCSSSLS-KMARFMAALALAYIV 685 (864)
Q Consensus 642 L~~--~~~~~~~i~~~g~v~~L~~ll~~~~~-~~~r~~aa~aL~~l~ 685 (864)
+.. .+..... -.+..+.+.+++.+.+. ..++.-|..|=+-+-
T Consensus 651 Im~Q~t~~~~pk--v~~frk~l~kvI~dKhEd~~aK~GAilAqGild 695 (929)
T KOG2062|consen 651 IMIQQTEQLCPK--VNGFRKQLEKVINDKHEDGMAKFGAILAQGILD 695 (929)
T ss_pred HHHhcccccCch--HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Confidence 754 1111111 11344577788876552 345666666555333
No 206
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.21 E-value=0.0015 Score=72.86 Aligned_cols=103 Identities=23% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHH-hcCCCccEEeccCCCCCCHHHhcCCC
Q 048757 78 RHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALA-KQCRQLVEVGFIDSGGVDEAALENLS 156 (864)
Q Consensus 78 ~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~-~~~~~L~~L~l~~c~~i~~~~~~~~~ 156 (864)
..|.|++||| +++ ++++.. ..+.|++|++|+|+++. ++. +..+. ..|+ |..|+|.++..-+-.++.+++
T Consensus 185 ll~ale~LnL--shN-k~~~v~---~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc~-L~~L~lrnN~l~tL~gie~Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNL--SHN-KFTKVD---NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGCK-LQLLNLRNNALTTLRGIENLK 254 (1096)
T ss_pred HHHHhhhhcc--chh-hhhhhH---HHHhcccccccccccch-hcc--ccccchhhhh-heeeeecccHHHhhhhHHhhh
Confidence 3578899999 654 455433 34578999999999976 332 12222 2355 899999987655556777999
Q ss_pred CcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC
Q 048757 157 SVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 157 ~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~ 191 (864)
+|+.||+++.-...-.-+..++. +..|+.|.+.|
T Consensus 255 sL~~LDlsyNll~~hseL~pLws-Ls~L~~L~LeG 288 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWS-LSSLIVLWLEG 288 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHH-HHHHHHHhhcC
Confidence 99999998753333334555553 66788888887
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.14 E-value=1.5 Score=52.61 Aligned_cols=251 Identities=10% Similarity=0.015 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC----CchhHHHHHh
Q 048757 322 QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV----DSKVAKAVSE 397 (864)
Q Consensus 322 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~ 397 (864)
..+.+..|...|..|+..-+ ....-..++|.++.++.++..+||..|+.+|..+-. -+..-.-+..
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~----------de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~ 505 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYID----------DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP 505 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcc----------hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH
Confidence 46788899999998875333 224446789999999999999999999999988543 1222223333
Q ss_pred cCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC-------------------CCc-----------HHHHHhhCcHHHHH
Q 048757 398 NGGIDILADLARS-TNRLVAEEVVGGLWNLSVG-------------------EDH-----------KGAIARAGGIKALV 446 (864)
Q Consensus 398 ~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~-------------------~~~-----------~~~i~~~g~i~~L~ 446 (864)
+=..|.|-.++.+ ....++..-+..|..|+.. +++ ..++. .++-+...
T Consensus 506 eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~-~~V~~~v~ 584 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH-HTVEQMVS 584 (1431)
T ss_pred hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHH-HHHHHHHH
Confidence 4456677777766 3333444444444444321 111 00010 11112233
Q ss_pred HHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcC----cHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCccc
Q 048757 447 DLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAG----GVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNN 522 (864)
Q Consensus 447 ~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~----~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 522 (864)
.++. ++++-|++.-...|.-||. .+++.+ .++.|+..|.+. ++.+|..-...+..++.. .
T Consensus 585 sLls---d~~~~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~------V 648 (1431)
T KOG1240|consen 585 SLLS---DSPPIVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIF------V 648 (1431)
T ss_pred HHHc---CCchHHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCc-cHHHHHHHHhhccceEEE------E
Confidence 3442 2334455444444444431 222222 256677777774 566665544444444331 1
Q ss_pred chhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 048757 523 AAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLS 602 (864)
Q Consensus 523 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~ 602 (864)
...-+++..+|.|.+-|.++.+-|...|+++|..|....-.++..+- ..++....+|-. ++.-+|..+++.|...+
T Consensus 649 G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~-~i~~~v~PlL~h---PN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 649 GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK-DILQDVLPLLCH---PNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH-HHHHhhhhheeC---chHHHHHHHHHHHHHHH
Confidence 12224667888888889999999999999999988665433222211 123333444444 78999999999998776
Q ss_pred c
Q 048757 603 L 603 (864)
Q Consensus 603 ~ 603 (864)
+
T Consensus 725 ~ 725 (1431)
T KOG1240|consen 725 R 725 (1431)
T ss_pred h
Confidence 4
No 208
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.11 E-value=0.024 Score=68.26 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=8.4
Q ss_pred CCCCcEEEccCCCCcc
Q 048757 206 SRNLKVLIALNCPVFE 221 (864)
Q Consensus 206 ~~~L~~L~~~~c~~~~ 221 (864)
+.+|+.|.+.+|...+
T Consensus 716 l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 716 LGNLEELSILDCGISE 731 (889)
T ss_pred ccCcceEEEEcCCCch
Confidence 3455555555555443
No 209
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.05 E-value=0.0043 Score=69.26 Aligned_cols=184 Identities=21% Similarity=0.190 Sum_probs=120.2
Q ss_pred CcEEEecCCCCchH---HHH---hCCcccceeeeecCCCCCHHHHHHHHhCCC----CcceEEeccCCCCCCCHHHHHHH
Q 048757 34 LQALWFRGALSADA---MII---LQARRLREINVEFCRELTDAIFSAIVARHE----MLEILHFGLDVCDRISSDAIKTV 103 (864)
Q Consensus 34 L~~L~l~~~~~~~~---l~~---~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~----~L~~L~l~~~~c~~i~~~~l~~l 103 (864)
+..|.+.+|..-+. ... ...++|..|+++++. ++|.+...+....+ .|+.|++ ..|. +++++...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l--~~c~-l~~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLEL--VSCS-LTSEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHh--hccc-ccccchHHH
Confidence 66677777764432 111 167788888888877 77888887765543 4566777 5564 566665554
Q ss_pred Hh---cCcCcCeeeecccCCCcHHHHHHHHhc-------CCCccEEeccCCCCCCHHHhc-------CCCC-cCEEEEeC
Q 048757 104 AY---CCPKLRRLWLSGVREVNGDAINALAKQ-------CRQLVEVGFIDSGGVDEAALE-------NLSS-VRYLSIAG 165 (864)
Q Consensus 104 ~~---~~~~L~~L~l~~~~~l~~~~l~~l~~~-------~~~L~~L~l~~c~~i~~~~~~-------~~~~-L~~L~l~~ 165 (864)
+. .++.|+.++++.|. +...+...+.+. ..++++|++++|. +++.... ..++ ++.|++..
T Consensus 165 ~~~L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHHhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh
Confidence 43 36778888888877 435444444332 3458888888875 4444333 4444 66688854
Q ss_pred CCCCCHHHHHHHHhcCC----CCcEEecCC---CCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 166 TRNLNWSSAAIAWSKLT----SLVGLDTSR---TNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 166 c~~~~~~~l~~l~~~~~----~L~~L~l~~---~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
..+.|.++..+...++ .++.++++. ++.+...+.+.+..++.++.+.+.+.+......
T Consensus 243 -n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 243 -NKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred -cCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 4577776766655444 447788887 666677777888888888888888777777665
No 210
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.99 E-value=0.016 Score=57.94 Aligned_cols=130 Identities=24% Similarity=0.251 Sum_probs=88.9
Q ss_pred CCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc-CCCC
Q 048757 79 HEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE-NLSS 157 (864)
Q Consensus 79 ~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~-~~~~ 157 (864)
.+-|+.|+| ++. .|+ .+..-.+-.|.++.|++|++. ++. +..+ ..+++|++||++++..-.-.++. .+.+
T Consensus 283 Wq~LtelDL--S~N-~I~--~iDESvKL~Pkir~L~lS~N~-i~~--v~nL-a~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDL--SGN-LIT--QIDESVKLAPKLRRLILSQNR-IRT--VQNL-AELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccc--ccc-chh--hhhhhhhhccceeEEeccccc-eee--ehhh-hhcccceEeecccchhHhhhhhHhhhcC
Confidence 466888999 654 233 233344567899999999987 432 2223 34889999999997644445666 8889
Q ss_pred cCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 158 VRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 158 L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
++.|.+++.. +. .+..+ .++-+|..||++++.+..-.-.+.+.++|.|+++.+.+.|.-.
T Consensus 354 IKtL~La~N~-iE--~LSGL-~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 354 IKTLKLAQNK-IE--TLSGL-RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred Eeeeehhhhh-Hh--hhhhh-HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 9999998743 21 22333 2466799999998665433334567888999999999988643
No 211
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.94 E-value=1.4 Score=43.29 Aligned_cols=146 Identities=11% Similarity=-0.010 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCC--CcHHHHHhhCcHHHHH
Q 048757 374 LQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARS-----TNRLVAEEVVGGLWNLSVGE--DHKGAIARAGGIKALV 446 (864)
Q Consensus 374 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~L~ 446 (864)
=...++..|.-++..|+.|..|.+...--.|..+|.. +.+.+|-.++++++.|..++ +.-..+...+.||.++
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3456778888899999999999998886666666643 35668999999999997643 4556667889999999
Q ss_pred HHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHh--------cCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCC
Q 048757 447 DLIFKWSSWNDGVLERAAGALANLAADDKCSLEVAR--------AGGVHALVMLARSFMFEGVQEQAARALANLVAHGDS 518 (864)
Q Consensus 447 ~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~--------~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~ 518 (864)
+.++ .+++.-+..|..++..+-.++..-..+.. ...+..++..+.+..++.+..+++++..+|+.
T Consensus 175 rime---~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd---- 247 (293)
T KOG3036|consen 175 RIME---SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD---- 247 (293)
T ss_pred HHHh---cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC----
Confidence 9997 47888888889898888777654322211 12233444444444567788899999999987
Q ss_pred Ccccchhh
Q 048757 519 NSNNAAVG 526 (864)
Q Consensus 519 ~~~~~~~~ 526 (864)
++..|..+
T Consensus 248 nprar~aL 255 (293)
T KOG3036|consen 248 NPRARAAL 255 (293)
T ss_pred CHHHHHHH
Confidence 45444433
No 212
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.88 E-value=0.43 Score=48.08 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHh-cCCCCcHHHHHhhCcHHHHHHHHc
Q 048757 374 LQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLAR-STNRLVAEEVVGGLWNL-SVGEDHKGAIARAGGIKALVDLIF 450 (864)
Q Consensus 374 ~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L-s~~~~~~~~i~~~g~i~~L~~lL~ 450 (864)
....|+..|..++- +|..+..+.+..+++.++++|. ...+.++..++.+|..+ ..++.|...+.+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 45567788888887 8999999999999999999994 46788999999998875 568899999999999999999998
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCC
Q 048757 451 KWSSWNDGVLERAAGALANLAAD 473 (864)
Q Consensus 451 ~~~~~~~~v~~~a~~~L~~L~~~ 473 (864)
. .+.+.+++..+...|.-....
T Consensus 187 ~-~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 S-KSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred c-ccccHHHhHHHHHHHHHHHcc
Confidence 7 455678887777766555433
No 213
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.82 E-value=0.75 Score=44.38 Aligned_cols=93 Identities=18% Similarity=0.094 Sum_probs=70.2
Q ss_pred chhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHH
Q 048757 498 FEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV 577 (864)
Q Consensus 498 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv 577 (864)
++.+|.+++.+++-|+..- +. ++ ...++.+...|.++++.+|..|+.+|..|...+-.+. +...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~---~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY---PN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC---cH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHH
Confidence 3678999999999998742 11 11 2467889999999999999999999999965532211 112236777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhccC
Q 048757 578 ALVRSCSSSSQGLQERAAGALWGLSLS 604 (864)
Q Consensus 578 ~lL~~~~~~~~~v~~~A~~aL~~L~~~ 604 (864)
.++.+ ++++++..|...+..+...
T Consensus 70 ~~l~D---~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVD---ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcC---CCHHHHHHHHHHHHHHHHh
Confidence 77876 8999999999999988765
No 214
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.81 E-value=1.9 Score=45.67 Aligned_cols=192 Identities=18% Similarity=0.080 Sum_probs=112.4
Q ss_pred HHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhh--ccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC---h
Q 048757 487 HALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGL--ETGALEALVQLTFSKHEGVRQEAAGALWNLSFD---D 561 (864)
Q Consensus 487 ~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~---~ 561 (864)
...+..+.+. ....|+.++..+.++..+. .....+. ....+..+.+.++.+..+-+..|+.++.-++.. .
T Consensus 46 ~~~Id~l~eK-~~~~Re~aL~~l~~~l~~~----~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 46 KEAIDLLTEK-SSSTREAALEALIRALSSR----YLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCC
Confidence 3344455543 4778899998888887632 1111111 223566777778777766677787777766554 2
Q ss_pred hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc---C-chhhHHhhhcCCHHHHH--HHHcc---------
Q 048757 562 RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL---S-EANSIAIGREGGVAPLI--ALARS--------- 626 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~---~-~~~~~~i~~~~~i~~Lv--~lL~~--------- 626 (864)
.....+.+ ...|.|.+.+.+. +.++.+|..++.+|+-++. . +....... ..++.+. ...+.
T Consensus 121 ~~~~ei~~-~~~~~L~~~l~d~-s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~ 196 (309)
T PF05004_consen 121 EDSEEIFE-ELKPVLKRILTDS-SASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAA 196 (309)
T ss_pred ccHHHHHH-HHHHHHHHHHhCC-ccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccC
Confidence 33444444 3678899998872 3456677777777765542 1 11111000 1112111 11111
Q ss_pred -CCHHHHHHHHHHHHHhcCCccc-HHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 627 -AVVDVHETAAGALWNLAFNPGN-ALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 627 -~~~~v~~~a~~aL~~L~~~~~~-~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
+++.+...|+.+.+-|...-+. ...-.-...+|.|..+|.+++ ..+|..|..+|+-+.+-.
T Consensus 197 ~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d-~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 197 EDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDD-VDVRIAAGEAIALLYELA 259 (309)
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHh
Confidence 1356788888887777653222 222222457999999999886 889999999988665433
No 215
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.31 E-value=0.12 Score=55.06 Aligned_cols=184 Identities=17% Similarity=0.076 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHhCCchhHHHHH-hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-----CCC---cHHHHHhhCcHHH
Q 048757 374 LQSEVAKAIANLSVDSKVAKAVS-ENGGIDILADLARSTNRLVAEEVVGGLWNLSV-----GED---HKGAIARAGGIKA 444 (864)
Q Consensus 374 ~~~~a~~~L~~L~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-----~~~---~~~~i~~~g~i~~ 444 (864)
++..|.++++-+.-.+-.+.... -..+...+...+.+..-..++.++++++|++. .|. ....+... .+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHH
Confidence 55556666665555664444322 23344556666677677899999999999965 222 12222211 2344
Q ss_pred HHHHHcccCCCCHHHHHHHHHHHHHhcCCCc----chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc
Q 048757 445 LVDLIFKWSSWNDGVLERAAGALANLAADDK----CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNS 520 (864)
Q Consensus 445 L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~----~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~ 520 (864)
+.+.-.......+.|+.++.++|+|+..--. .--.....+.+..++...--+..-.++.+++.++.||-.++. -
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a--~ 563 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA--L 563 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcc--c
Confidence 4444333344667899999999999865311 111111223333333322222346789999999999998532 1
Q ss_pred ccchhhhccChHHHHHHHhcC-CCHHHHHHHHHHHHHhcCC
Q 048757 521 NNAAVGLETGALEALVQLTFS-KHEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 521 ~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~Ls~~ 560 (864)
..+..-....+++.|..++.+ .+-++|..|+.+|..-...
T Consensus 564 ~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 564 PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 112222334567777777654 6888999999999877554
No 216
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.29 E-value=0.07 Score=46.51 Aligned_cols=70 Identities=16% Similarity=0.088 Sum_probs=59.5
Q ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 572 GVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 572 ~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
.+..|+++|.. +.++.+..-|+.-|+.+++. |..+..+.+.|+-..++.++.+++++|+..|+.++..+.
T Consensus 44 llk~L~~lL~~--s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDK--SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc--CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 47888999954 35788888899999999987 888888888999999999999999999999999998875
No 217
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=94.25 E-value=0.12 Score=45.01 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=56.5
Q ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh
Q 048757 359 GVRLLLDLAR-SPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNL 426 (864)
Q Consensus 359 ~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L 426 (864)
.+..|+++|. +.|+.+...|+.=|+.++. .|..+..+.+.|+-+.+++++.++|++|+..|+.++..+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4677888884 4577788888888999888 688999998999999999999999999999999998876
No 218
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.25 E-value=0.0061 Score=60.22 Aligned_cols=86 Identities=24% Similarity=0.283 Sum_probs=36.9
Q ss_pred CccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCC-HHHHHHHhcCCCCCcEEE
Q 048757 135 QLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNIN-LSSVTRLLSSSRNLKVLI 213 (864)
Q Consensus 135 ~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~-~~~l~~~~~~~~~L~~L~ 213 (864)
.|+.|++.+|...|-..+-.+|+|+.|.++....-...++..+...||+|++++++++.+. ++.+ +-+..+++|..|+
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhh
Confidence 3444444444433333333445555555544322222344444445555555555552222 1111 1122234455555
Q ss_pred ccCCCCcc
Q 048757 214 ALNCPVFE 221 (864)
Q Consensus 214 ~~~c~~~~ 221 (864)
+.+|+...
T Consensus 123 l~n~~~~~ 130 (260)
T KOG2739|consen 123 LFNCSVTN 130 (260)
T ss_pred cccCCccc
Confidence 55555444
No 219
>PRK15386 type III secretion protein GogB; Provisional
Probab=94.24 E-value=0.04 Score=59.36 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=71.5
Q ss_pred hCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCC
Q 048757 77 ARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLS 156 (864)
Q Consensus 77 ~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~ 156 (864)
..|+++++|++ +.| .++. +...-++|++|++++|..++. +... -.++|++|++++|..+.. -.+
T Consensus 49 ~~~~~l~~L~I--s~c-~L~s-----LP~LP~sLtsL~Lsnc~nLts--LP~~--LP~nLe~L~Ls~Cs~L~s----LP~ 112 (426)
T PRK15386 49 EEARASGRLYI--KDC-DIES-----LPVLPNELTEITIENCNNLTT--LPGS--IPEGLEKLTVCHCPEISG----LPE 112 (426)
T ss_pred HHhcCCCEEEe--CCC-CCcc-----cCCCCCCCcEEEccCCCCccc--CCch--hhhhhhheEccCcccccc----ccc
Confidence 34799999999 778 4432 222334699999999887532 1111 136899999999976642 235
Q ss_pred CcCEEEEeCCCCCCHHHHHHHHhcC-CCCcEEecCCCC-CCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 157 SVRYLSIAGTRNLNWSSAAIAWSKL-TSLVGLDTSRTN-INLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 157 ~L~~L~l~~c~~~~~~~l~~l~~~~-~~L~~L~l~~~~-~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
+|+.|++++ ..... + ..+ ++|+.|.+.+.. .....+...+ .++|+.|.+.+|..+.
T Consensus 113 sLe~L~L~~-n~~~~--L----~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 113 SVRSLEIKG-SATDS--I----KNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII 170 (426)
T ss_pred ccceEEeCC-CCCcc--c----ccCcchHhheecccccccccccccccc--CCcccEEEecCCCccc
Confidence 688888864 22221 1 123 357777765411 1111111111 2679999999999764
No 220
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.06 E-value=3.3 Score=45.12 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=75.5
Q ss_pred hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHH-cc--CchhHHHHHHHHHHHHhh
Q 048757 439 AGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLAR-SF--MFEGVQEQAARALANLVA 514 (864)
Q Consensus 439 ~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~-~~--~~~~v~~~a~~aL~~L~~ 514 (864)
......|..+++....-...+...|+.++..+..+++ .-..+.+.|.++.+++.+. .. .+.++....-.++..||-
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 3344555566654333345777788889998888876 6677788999999999998 32 345666677788888898
Q ss_pred cCCCCcccchhhhccChHHHHHHHhcCCC
Q 048757 515 HGDSNSNNAAVGLETGALEALVQLTFSKH 543 (864)
Q Consensus 515 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 543 (864)
|..-.+.+.+.+.++.+++.+.+++
T Consensus 185 ----N~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 185 ----NNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred ----CHHHHHHHHhcChHHHHHHHhCCHH
Confidence 6777888889999999999987753
No 221
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=93.93 E-value=0.027 Score=58.80 Aligned_cols=43 Identities=12% Similarity=-0.051 Sum_probs=24.7
Q ss_pred HhcCCCCcEEEecCCCCc--hHHHHhCCcccceeeeecCCCCCHH
Q 048757 28 SSRCTNLQALWFRGALSA--DAMIILQARRLREINVEFCRELTDA 70 (864)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~--~~l~~~~~~~L~~L~l~~c~~l~d~ 70 (864)
.+.+++|+.|+|+.+... ..-....+++|.+|-+.+..+|++-
T Consensus 87 F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence 445677888888877422 2211225666666666665556553
No 222
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.93 E-value=4 Score=44.37 Aligned_cols=242 Identities=19% Similarity=0.135 Sum_probs=132.2
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHcc-CCH-HHHHHHHHHHHHhcCCCCcHHHH
Q 048757 360 VRLLLDLARS-PPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARS-TNR-LVAEEVVGGLWNLSVGEDHKGAI 436 (864)
Q Consensus 360 i~~L~~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~-~v~~~a~~aL~~Ls~~~~~~~~i 436 (864)
+..++.-+++ ....+|..++--|..-+.+++.+..+...|.++.+++.+.+ ++. .....++.++.-++.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 4556666653 45678888888888888899999999999999999998843 333 33333444444555544433333
Q ss_pred HhhCcHHHHHHHHc--c------------------------------------cC---CCCHHHHHHHHHHHHHhc----
Q 048757 437 ARAGGIKALVDLIF--K------------------------------------WS---SWNDGVLERAAGALANLA---- 471 (864)
Q Consensus 437 ~~~g~i~~L~~lL~--~------------------------------------~~---~~~~~v~~~a~~~L~~L~---- 471 (864)
.+.+....++.++. . +. .....-+..|..++-.++
T Consensus 103 ~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~~ 182 (361)
T PF07814_consen 103 LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSLR 182 (361)
T ss_pred hchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHHh
Confidence 34444444455554 0 00 011112223444444442
Q ss_pred ----------C-CCcchHHHHhcCcHHHHHHHHHc----cC------ch-----hHHHHHHHHHHHHhhcCCCCcccchh
Q 048757 472 ----------A-DDKCSLEVARAGGVHALVMLARS----FM------FE-----GVQEQAARALANLVAHGDSNSNNAAV 525 (864)
Q Consensus 472 ----------~-~~~~~~~i~~~~~i~~Lv~ll~~----~~------~~-----~v~~~a~~aL~~L~~~~~~~~~~~~~ 525 (864)
. .+..++.+...|++..++..+.+ .. .+ ..-..+..+|.+.+... +.++..
T Consensus 183 ~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~---~~nq~~ 259 (361)
T PF07814_consen 183 EAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS---EENQSY 259 (361)
T ss_pred hcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC---ccchHH
Confidence 0 12256677788889999999863 10 11 12234667777777653 333332
Q ss_pred hhcc---ChHHHHHHHhc---CCCHHHHHHHHHHHHHhcCCh-hhHHHHHHCCChHHHHHHHHh---c--------CCCC
Q 048757 526 GLET---GALEALVQLTF---SKHEGVRQEAAGALWNLSFDD-RNREAIAAAGGVEALVALVRS---C--------SSSS 587 (864)
Q Consensus 526 ~~~~---~~i~~L~~lL~---~~~~~v~~~a~~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~---~--------~~~~ 587 (864)
.... ..+..+..++. .....+...+++.+.|++.+. +....+...+....+..+... . ....
T Consensus 260 l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~ 339 (361)
T PF07814_consen 260 LLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESS 339 (361)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccccccccc
Confidence 2222 22222222222 233445678999999999874 455555554332222211111 0 0123
Q ss_pred HHHHHHHHHHHHHhccC
Q 048757 588 QGLQERAAGALWGLSLS 604 (864)
Q Consensus 588 ~~v~~~A~~aL~~L~~~ 604 (864)
-+...-+.++|-||+..
T Consensus 340 ~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 340 FDILILALGLLINLVEH 356 (361)
T ss_pred chHHHHHHHhHHHheee
Confidence 45666788888888765
No 223
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=93.91 E-value=0.0037 Score=48.15 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=21.1
Q ss_pred hcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCC
Q 048757 105 YCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSG 145 (864)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 145 (864)
..+++|++|+++++. ++.-. .....++|+|++|++++|.
T Consensus 22 ~~l~~L~~L~l~~N~-l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 22 SNLPNLETLDLSNNN-LTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTGTTESEEEETSSS-ESEEE-TTTTTTSTTESEEEETSSS
T ss_pred cCCCCCCEeEccCCc-cCccC-HHHHcCCCCCCEEeCcCCc
Confidence 345666666666654 33111 1123456777777776653
No 224
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.91 E-value=0.38 Score=46.54 Aligned_cols=123 Identities=15% Similarity=0.047 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCchhHHHHHhcC----------------cHHHHHHHHcc------CCHHHHHHHHHHHHHh
Q 048757 369 SPPEGLQSEVAKAIANLSVDSKVAKAVSENG----------------GIDILADLARS------TNRLVAEEVVGGLWNL 426 (864)
Q Consensus 369 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g----------------~i~~Lv~lL~~------~~~~v~~~a~~aL~~L 426 (864)
+++......++-.|.|++..++.+..+.+.+ .+..|++.+-. ....-..+.+.+|.|+
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~Nl 85 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANL 85 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHh
Confidence 3445566778888999998877766554332 35567776533 2344567888999999
Q ss_pred cCCCCcHHHHHhh--Cc--HHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcC---cHHHHHHHHH
Q 048757 427 SVGEDHKGAIARA--GG--IKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAG---GVHALVMLAR 494 (864)
Q Consensus 427 s~~~~~~~~i~~~--g~--i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~---~i~~Lv~ll~ 494 (864)
+..++.|..+.+. +. +..|+.++. +.+..-|..++++|.|+|.+.+....+...+ .+|.|+--+.
T Consensus 86 S~~~~gR~~~l~~~~~~~~l~kLl~ft~---~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 86 SQLPEGRQFFLDPQRYDGPLQKLLPFTE---HKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred cCCHHHHHHHhCchhhhhHHHHHHHHhc---cCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999999744 33 667777775 3476777899999999999988777776543 3454444443
No 225
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.91 E-value=13 Score=42.54 Aligned_cols=133 Identities=20% Similarity=0.121 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHH
Q 048757 323 QEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGID 402 (864)
Q Consensus 323 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~ 402 (864)
+.+...++..+.+|-..+.+. . .-.+.+..+++...+++..||..++..|..+.........-+-.+...
T Consensus 60 dRIl~fla~fv~sl~q~d~e~---------D-lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e 129 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEE---------D-LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNE 129 (892)
T ss_pred HHHHHHHHHHHHhhhccCchh---------h-HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHH
Confidence 566677777777765333221 1 225667778888888999999999999999888443333333345566
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC
Q 048757 403 ILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADD 474 (864)
Q Consensus 403 ~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~ 474 (864)
.+..-+.+..|.|+..|+.+|..+-.++..- +..++..+..+++. +++++||..|.. +++-++
T Consensus 130 ~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqn--DpS~EVRRaaLs---nI~vdn 192 (892)
T KOG2025|consen 130 KLLIRLKDREPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQN--DPSDEVRRAALS---NISVDN 192 (892)
T ss_pred HHHHHHhccCchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhc--CCcHHHHHHHHH---hhccCc
Confidence 6666677889999999999999996422110 22356778888886 788899987654 444443
No 226
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.90 E-value=0.052 Score=32.55 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=11.9
Q ss_pred CcCcCeeeecccCCCcHHHHHHHH
Q 048757 107 CPKLRRLWLSGVREVNGDAINALA 130 (864)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~l~~l~ 130 (864)
|++|++|+|++|. ++++++..|+
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 4556666666665 6666665554
No 227
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.81 E-value=0.054 Score=38.29 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=12.9
Q ss_pred CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCC
Q 048757 109 KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDS 144 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 144 (864)
+|++|+++++. +++ +.....+|++|++|++++|
T Consensus 2 ~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCC
Confidence 44444444443 332 2221233444444444444
No 228
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.68 E-value=19 Score=42.50 Aligned_cols=227 Identities=15% Similarity=0.019 Sum_probs=142.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHH
Q 048757 454 SWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALE 533 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~ 533 (864)
+..+.+.-.+..++...+........+. .-.....+..+.-...+.++..|+++++.-+.. . .. .-..++++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~-vl-~~~~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV----K-VL-LSLQPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc----e-ec-cccchHHHH
Confidence 3445555566666664443322111111 112233344444445577778888877776632 1 11 112457788
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh
Q 048757 534 ALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR 613 (864)
Q Consensus 534 ~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~ 613 (864)
.|+++....+.++....+++|...+..+.......+....|.++.+... .+.+|.+...+-.++-.++....+..- ..
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k-~s~DP~V~~~~qd~f~el~q~~~~~g~-m~ 611 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK-YSEDPQVASLAQDLFEELLQIAANYGP-MQ 611 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHhhcc-hH
Confidence 8888888888889989999999887776555555555666766666544 357888888888888777764333222 23
Q ss_pred cCCHHHHHHHHccCC----HHHHHHHHHHHHHhcCCcc-cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 614 EGGVAPLIALARSAV----VDVHETAAGALWNLAFNPG-NALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 614 ~~~i~~Lv~lL~~~~----~~v~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
...+|.+++.|+.+. ......|+..|..+..+.+ .-....-.-+.|++.+.+-.+++..+-++|..+|+.+....
T Consensus 612 e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVT 691 (1005)
T ss_pred HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcC
Confidence 457899999998765 5666677888877765322 12222223578888887766656778888999999887765
Q ss_pred c
Q 048757 689 M 689 (864)
Q Consensus 689 ~ 689 (864)
.
T Consensus 692 ~ 692 (1005)
T KOG2274|consen 692 L 692 (1005)
T ss_pred H
Confidence 5
No 229
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.68 E-value=0.95 Score=45.67 Aligned_cols=101 Identities=21% Similarity=0.223 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHhcc-CchhhHHhhhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHH
Q 048757 587 SQGLQERAAGALWGLSL-SEANSIAIGREGGVAPLIALAR-SAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIH 663 (864)
Q Consensus 587 ~~~v~~~A~~aL~~L~~-~~~~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ 663 (864)
++.+...|+..|..++- +++.+..+.+..+++.|+++|. +..+.++..++.+|..+.. ++.|...+-+.+|++.++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 44456678888888875 5899999999999999999994 4668889889888888765 7889999999999999999
Q ss_pred HhcCCC-cHHHHHHHHHHHH-HhhcC
Q 048757 664 LCSSSL-SKMARFMAALALA-YIVDG 687 (864)
Q Consensus 664 ll~~~~-~~~~r~~aa~aL~-~l~~~ 687 (864)
++++.. +..+|...+.-|. ++...
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHccc
Confidence 998754 4678888888766 44433
No 230
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.66 E-value=0.12 Score=33.28 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=24.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFV 337 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~ 337 (864)
+|.+++++++++++||..|+.+|+.++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 588999999999999999999999986
No 231
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.60 E-value=0.12 Score=36.56 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=21.3
Q ss_pred CCccEEeccCCCCCCHHH--hcCCCCcCEEEEeCCC
Q 048757 134 RQLVEVGFIDSGGVDEAA--LENLSSVRYLSIAGTR 167 (864)
Q Consensus 134 ~~L~~L~l~~c~~i~~~~--~~~~~~L~~L~l~~c~ 167 (864)
|+|++|+++++. +++-. +.+|++|+.|++++|.
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC
Confidence 567888888763 55433 4478888888887773
No 232
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.60 E-value=0.054 Score=51.44 Aligned_cols=13 Identities=46% Similarity=0.460 Sum_probs=8.2
Q ss_pred hcCCCCcEEecCC
Q 048757 179 SKLTSLVGLDTSR 191 (864)
Q Consensus 179 ~~~~~L~~L~l~~ 191 (864)
..+|+|+.||+.+
T Consensus 137 ~klp~l~~LDF~k 149 (233)
T KOG1644|consen 137 YKLPSLRTLDFQK 149 (233)
T ss_pred EecCcceEeehhh
Confidence 3566666666666
No 233
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.46 E-value=1.4 Score=48.15 Aligned_cols=156 Identities=13% Similarity=0.089 Sum_probs=111.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCH----HHHHHHHHHHHHhcCCCCcHH
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNR----LVAEEVVGGLWNLSVGEDHKG 434 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~v~~~a~~aL~~Ls~~~~~~~ 434 (864)
....+++.+.+++...+..+..-|..++.++.....+....|+..|.++..+++. ++...++.++..+-...-...
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3456788889999999999999999999999999999999999999999987644 566667777766633221111
Q ss_pred HHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHh
Q 048757 435 AIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLV 513 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~ 513 (864)
......+|...+.+... ...+..+...|...|-++...+. ....+.+.--+..|+..++.. +..++..|...+..+.
T Consensus 164 ~~~~~~fV~~~a~~V~~-~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNA-KREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhh-hhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHHHH
Confidence 11222234444444421 23445677788999999888776 566677777799999999885 5777777776666666
Q ss_pred hcC
Q 048757 514 AHG 516 (864)
Q Consensus 514 ~~~ 516 (864)
...
T Consensus 242 ~~a 244 (713)
T KOG2999|consen 242 RKA 244 (713)
T ss_pred hhC
Confidence 543
No 234
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.31 E-value=0.14 Score=32.91 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=24.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 617 VAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 617 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
+|.+++++++++++||..|+.+|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999873
No 235
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.04 E-value=9.1 Score=41.50 Aligned_cols=194 Identities=15% Similarity=0.075 Sum_probs=123.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCc----hhHHHHHhcCcHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCC
Q 048757 362 LLLDLARSPPEGLQSEVAKAIANLSVDS----KVAKAVSENGGIDILADLARST-------NRLVAEEVVGGLWNLSVGE 430 (864)
Q Consensus 362 ~L~~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~a~~aL~~Ls~~~ 430 (864)
.+..+++..+.+-|..|+-....+.++. .+++.+.+.-|.+.+-+++.+. +.-.+.-+...|...|..|
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p 94 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP 94 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence 3566667777777888888888888854 4677788888888888888542 2335566777788888877
Q ss_pred Cc--HHHHHhhCcHHHHHHHHcccCCCCH----HHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHH
Q 048757 431 DH--KGAIARAGGIKALVDLIFKWSSWND----GVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQ 504 (864)
Q Consensus 431 ~~--~~~i~~~g~i~~L~~lL~~~~~~~~----~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~ 504 (864)
+. ...|++ .||.|.+++.+..+.+. .+.+.+-.+|..++..+.....++..|+++.+.++-..++...-+.-
T Consensus 95 ElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 95 ELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 64 444544 68999999986333322 26678889999999998888999999999999987665433333444
Q ss_pred HHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 048757 505 AARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSF 559 (864)
Q Consensus 505 a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~ 559 (864)
++..+.-+...-+.-++....+. ..+..+..=+...+...+.+.+..|..+-.
T Consensus 173 al~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 55555444433221111111111 112222222333455677788888875533
No 236
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.93 E-value=0.046 Score=51.90 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=62.8
Q ss_pred cccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcC
Q 048757 54 RRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQC 133 (864)
Q Consensus 54 ~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 133 (864)
.+...+||++...... ....+.++|..|.+ + ...|++-. ..+....|+|+.|.+.++.-..-..+..++. |
T Consensus 42 d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll--~-nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~ 112 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL----DNLPHLPRLHTLLL--N-NNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLAS-C 112 (233)
T ss_pred cccceecccccchhhc----ccCCCccccceEEe--c-CCcceeec-cchhhhccccceEEecCcchhhhhhcchhcc-C
Confidence 3455566655431111 11245778888888 3 34555321 1233456889999998876222233445554 9
Q ss_pred CCccEEeccCCCCCCHH-Hhc-----CCCCcCEEEEeCCC
Q 048757 134 RQLVEVGFIDSGGVDEA-ALE-----NLSSVRYLSIAGTR 167 (864)
Q Consensus 134 ~~L~~L~l~~c~~i~~~-~~~-----~~~~L~~L~l~~c~ 167 (864)
|.|++|.+-+.+ +++. ... .+|+|+.||+.+..
T Consensus 113 p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 113 PKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 999999998854 4443 222 78999999997643
No 237
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.92 E-value=4.2 Score=46.19 Aligned_cols=178 Identities=18% Similarity=0.098 Sum_probs=106.4
Q ss_pred cHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhH
Q 048757 485 GVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNR 564 (864)
Q Consensus 485 ~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~ 564 (864)
.+..+++...+ ++..||..++..|+.+... ...+...+-.+....+..-+.+..+.||..|+.+|..+-.++..-
T Consensus 86 ~f~hlLRg~Es-kdk~VRfrvlqila~l~d~----~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 86 TFYHLLRGTES-KDKKVRFRVLQILALLSDE----NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHhcccC-cchhHHHHHHHHHHHHhcc----ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 34444444455 3578999999999988752 122222333455666666677888999999999999986443221
Q ss_pred HHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh-----cCCHH-------------------HH
Q 048757 565 EAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR-----EGGVA-------------------PL 620 (864)
Q Consensus 565 ~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~-----~~~i~-------------------~L 620 (864)
+..++..+..+++. .++++||..|+..+. .++.....+++ .++.. .-
T Consensus 161 ----e~~v~n~l~~liqn--DpS~EVRRaaLsnI~---vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~kr 231 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQN--DPSDEVRRAALSNIS---VDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKR 231 (892)
T ss_pred ----cccHHHHHHHHHhc--CCcHHHHHHHHHhhc---cCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence 23467788888886 689999998766554 33222222221 11111 11
Q ss_pred HHH----HccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048757 621 IAL----ARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAY 683 (864)
Q Consensus 621 v~l----L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~ 683 (864)
+.+ |.+.+..|+..+..++..=+.. ...|-++-|.+-+.-+++..+++.|..||..
T Consensus 232 v~LlewgLnDRe~sVk~A~~d~il~~Wl~-------~~dgni~ElL~~ldvsnss~vavk~lealf~ 291 (892)
T KOG2025|consen 232 VLLLEWGLNDREFSVKGALVDAILSGWLR-------FSDGNILELLERLDVSNSSEVAVKALEALFS 291 (892)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHhh-------hccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence 122 2233445555555544432210 1246677778778777767788888888865
No 238
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=92.84 E-value=6.4 Score=39.65 Aligned_cols=192 Identities=14% Similarity=0.016 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHHhcCCCcchHHHH--hcCcHHHHHHHHHcc----Cch-------hHHHHHHHHHHHHhhcCCCCccc
Q 048757 456 NDGVLERAAGALANLAADDKCSLEVA--RAGGVHALVMLARSF----MFE-------GVQEQAARALANLVAHGDSNSNN 522 (864)
Q Consensus 456 ~~~v~~~a~~~L~~L~~~~~~~~~i~--~~~~i~~Lv~ll~~~----~~~-------~v~~~a~~aL~~L~~~~~~~~~~ 522 (864)
+++.|+.|..-|+.--..-+.-..+. ..|.+..|++=+-+- .++ .--.+|+..|..+++ .++.
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs----hpet 83 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS----HPET 83 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-----TTT
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc----ChHH
Confidence 45667666655544332222222222 456666555443221 111 122356677778888 4678
Q ss_pred chhhhccChHHHHHHHhcCCC-----HHHHHHHHHHHHHhcCCh--hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHH
Q 048757 523 AAVGLETGALEALVQLTFSKH-----EGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVALVRSCSSSSQGLQERAA 595 (864)
Q Consensus 523 ~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~ 595 (864)
|..+.+....-.|..+|+..+ +.+|..+.+.++.+...+ +....+.+...+|..++.+.. +++-.+..|.
T Consensus 84 r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~---GselSKtvAt 160 (262)
T PF04078_consen 84 RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEF---GSELSKTVAT 160 (262)
T ss_dssp HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHH---S-HHHHHHHH
T ss_pred HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHh---ccHHHHHHHH
Confidence 888899888888888887542 568999999999998853 456677888999999999997 8888999999
Q ss_pred HHHHHhccCchhhHHhhh--------cCCHHHHH-HHHccCCHHHHHHHHHHHHHhcCCcccHHHHHh
Q 048757 596 GALWGLSLSEANSIAIGR--------EGGVAPLI-ALARSAVVDVHETAAGALWNLAFNPGNALCIVE 654 (864)
Q Consensus 596 ~aL~~L~~~~~~~~~i~~--------~~~i~~Lv-~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~ 654 (864)
.++..+-.++..-..+.+ ..++..++ .+.+.+++.+...++++-.+|+.++..+..+..
T Consensus 161 fIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 161 FILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999987665443322221 22333344 334567888999999999999998887766653
No 239
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=92.68 E-value=10 Score=40.41 Aligned_cols=204 Identities=15% Similarity=0.025 Sum_probs=139.5
Q ss_pred HHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-chh-----HHHHHhc--CcHHHHHHHHccCCHHHHHHHHHHH
Q 048757 352 EAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD-SKV-----AKAVSEN--GGIDILADLARSTNRLVAEEVVGGL 423 (864)
Q Consensus 352 ~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~-----~~~i~~~--g~i~~Lv~lL~~~~~~v~~~a~~aL 423 (864)
..+...+.+..|+..|..-+-+.+..++.+..++-.. ... ...+... ..+..|+.. .+++++.-.+...|
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g--y~~~dial~~g~ml 147 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG--YENPDIALNCGDML 147 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG--GGSTTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH--hcCccccchHHHHH
Confidence 3466789999999999999999999999999987662 222 2223222 123333332 34677778888999
Q ss_pred HHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhc---CcHHHHHHHHHccCch
Q 048757 424 WNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARA---GGVHALVMLARSFMFE 499 (864)
Q Consensus 424 ~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~---~~i~~Lv~ll~~~~~~ 499 (864)
+.+...+.....+.....+..+.+.+. .++-++...|..++..+-.... ....+... ..+.....++.++ +=
T Consensus 148 Rec~k~e~l~~~iL~~~~f~~ff~~~~---~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NY 223 (335)
T PF08569_consen 148 RECIKHESLAKIILYSECFWKFFKYVQ---LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NY 223 (335)
T ss_dssp HHHTTSHHHHHHHHTSGGGGGHHHHTT---SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SH
T ss_pred HHHHhhHHHHHHHhCcHHHHHHHHHhc---CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-Ce
Confidence 999998888888888878888888875 4777888888888888655433 33333333 2356667777764 55
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh
Q 048757 500 GVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDD 561 (864)
Q Consensus 500 ~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~ 561 (864)
-++.+++..|+.+-....+..-....+.+..-+..++.+|++++..+|.+|..++.-...+|
T Consensus 224 vtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 224 VTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred EeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 67889999999998742211111345566677888999999999999999999998776664
No 240
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.54 E-value=0.52 Score=37.33 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcC
Q 048757 547 RQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREG 615 (864)
Q Consensus 547 ~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~ 615 (864)
.+.|.+++.+++..+.....+.+.+.++.++++... ++...+|--|..+|+-++...+.++.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~--s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN--SPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh--CCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 568999999999999888888888999999999997 5788999999999999999888877776654
No 241
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.50 E-value=2.6 Score=49.92 Aligned_cols=203 Identities=16% Similarity=0.012 Sum_probs=107.3
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhhCcHHHHHHHHccc-CCCCHHHHHHHHHHHHHhcCCCc-
Q 048757 399 GGIDILADLARSTNRLVAEEVVGGLWNLSVGE-DHKGAIARAGGIKALVDLIFKW-SSWNDGVLERAAGALANLAADDK- 475 (864)
Q Consensus 399 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~-~~~~~~v~~~a~~~L~~L~~~~~- 475 (864)
.++..+.+++......- ..+...|..+.... .- ....+..+..+++.. ...+..++..|.-+++.+....-
T Consensus 395 ~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 34666677766533222 22444455443211 11 112344455555421 12345666667766666643211
Q ss_pred ---------chHHHHhcCcHHHHHHHHH---ccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC-
Q 048757 476 ---------CSLEVARAGGVHALVMLAR---SFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK- 542 (864)
Q Consensus 476 ---------~~~~i~~~~~i~~Lv~ll~---~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~- 542 (864)
..........++.+...+. +..+.+.+..++.||+|+... ..++.|...+...
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~--------------~~i~~l~~~i~~~~ 534 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP--------------ESIPVLLPYIEGKE 534 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G--------------GGHHHHHTTSTTSS
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc--------------hhhHHHHhHhhhcc
Confidence 1111122344666666665 223456678899999999852 4678888888776
Q ss_pred --CHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHH
Q 048757 543 --HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPL 620 (864)
Q Consensus 543 --~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~L 620 (864)
...+|..|+.+|..++..... .+.+.|..++.+ ...++++|.+|..+|...- | ....+..+
T Consensus 535 ~~~~~~R~~Ai~Alr~~~~~~~~-------~v~~~l~~I~~n-~~e~~EvRiaA~~~lm~~~--P-------~~~~l~~i 597 (618)
T PF01347_consen 535 EVPHFIRVAAIQALRRLAKHCPE-------KVREILLPIFMN-TTEDPEVRIAAYLILMRCN--P-------SPSVLQRI 597 (618)
T ss_dssp -S-HHHHHHHHHTTTTGGGT-HH-------HHHHHHHHHHH--TTS-HHHHHHHHHHHHHT------------HHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhcCcH-------HHHHHHHHHhcC-CCCChhHHHHHHHHHHhcC--C-------CHHHHHHH
Confidence 677999999999988554321 134667777775 3567889999988886411 1 11234556
Q ss_pred HHHHcc-CCHHHHHHHHHH
Q 048757 621 IALARS-AVVDVHETAAGA 638 (864)
Q Consensus 621 v~lL~~-~~~~v~~~a~~a 638 (864)
...+.. ++..|...+...
T Consensus 598 ~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 598 AQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp HHHHTT-S-HHHHHHHHHH
T ss_pred HHHHhhCchHHHHHHHHHh
Confidence 666654 345555544433
No 242
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.32 E-value=6.4 Score=42.75 Aligned_cols=244 Identities=18% Similarity=0.083 Sum_probs=135.6
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCH-HHHHHHHHHHHHhcCCCcchH
Q 048757 401 IDILADLAR-STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWND-GVLERAAGALANLAADDKCSL 478 (864)
Q Consensus 401 i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~-~v~~~a~~~L~~L~~~~~~~~ 478 (864)
++.++.-++ +....+|..++--|..-+.+++.+..+..+|.++.+++.+.+ .+++ ..--.++.++.-++.+.....
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~--~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSD--APDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhcc--ccchHHHHHHHHHHHHHHccCCcchh
Confidence 455555555 345568888888888888899999999999999999999964 2233 223333444444444444443
Q ss_pred HHHhcCcHHHHHHHHH--cc-----------------------------------------CchhHHHHHHHHHHHHhh-
Q 048757 479 EVARAGGVHALVMLAR--SF-----------------------------------------MFEGVQEQAARALANLVA- 514 (864)
Q Consensus 479 ~i~~~~~i~~Lv~ll~--~~-----------------------------------------~~~~v~~~a~~aL~~L~~- 514 (864)
.+.+......++.++. .. ....-+..|..++..++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~ 180 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS 180 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence 3334444444455544 00 001112334445555521
Q ss_pred ----------cCCCCcccchhhhccChHHHHHHHhcC----C------------CHHHHHHHHHHHHHhcCC-hhhHHHH
Q 048757 515 ----------HGDSNSNNAAVGLETGALEALVQLTFS----K------------HEGVRQEAAGALWNLSFD-DRNREAI 567 (864)
Q Consensus 515 ----------~~~~~~~~~~~~~~~~~i~~L~~lL~~----~------------~~~v~~~a~~~L~~Ls~~-~~~~~~i 567 (864)
.....+..+..+.+.|++..++..+.. . +......+.++|-+.+.. ++++..+
T Consensus 181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l 260 (361)
T PF07814_consen 181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL 260 (361)
T ss_pred HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 000112335566777889999988751 1 111344566777777665 4556655
Q ss_pred HHCC--C-hHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHH---HHHc---c--------CCH
Q 048757 568 AAAG--G-VEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLI---ALAR---S--------AVV 629 (864)
Q Consensus 568 ~~~~--~-i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv---~lL~---~--------~~~ 629 (864)
.... . +..+..++..+....+.....+++.+.|++.+ +..+..+...+..+.+. ..+. + ..-
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 340 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSF 340 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccc
Confidence 5532 2 33333333332223455577899999999976 66666666543333221 1111 1 123
Q ss_pred HHHHHHHHHHHHhcCCc
Q 048757 630 DVHETAAGALWNLAFNP 646 (864)
Q Consensus 630 ~v~~~a~~aL~~L~~~~ 646 (864)
+..--+.++|.||+.+.
T Consensus 341 D~~IL~Lg~LINL~E~s 357 (361)
T PF07814_consen 341 DILILALGLLINLVEHS 357 (361)
T ss_pred hHHHHHHHhHHHheeeC
Confidence 45556888888888643
No 243
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=92.15 E-value=0.62 Score=54.09 Aligned_cols=151 Identities=16% Similarity=0.006 Sum_probs=100.5
Q ss_pred CcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhh-ccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh-
Q 048757 484 GGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGL-ETGALEALVQLTFSKHEGVRQEAAGALWNLSFDD- 561 (864)
Q Consensus 484 ~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~- 561 (864)
..+|.|++..... +...+..-..+|.+.-.+ .|- ...+- -....|.|++.|.-+|..+|..+..+|.-+....
T Consensus 867 ~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~---vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 867 DIVPILVSKFETA-PGSQKHNYLEALSHVLTN---VPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred hhHHHHHHHhccC-CccchhHHHHHHHHHHhc---CCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 4578888888743 355666778888888763 222 11111 1345677788888899999999888887664332
Q ss_pred hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 048757 562 RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALW 640 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 640 (864)
.-....+. ..+|.++.+=.+..+....+|+.|..+|..|.+- |...-.-.+..++..|++.|.++..-||..|+.+=.
T Consensus 942 tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 942 TLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred ccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 22222222 2566666665541111378999999999999984 555545556678899999999988889998887643
No 244
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.14 E-value=3.2 Score=48.18 Aligned_cols=219 Identities=14% Similarity=0.055 Sum_probs=128.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHH
Q 048757 365 DLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKA 444 (864)
Q Consensus 365 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~ 444 (864)
..+.++.+.++..++..|+++....+-+..+...+.+...+..|++.|+.+--+|...+..||.- .....+|.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~d 806 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPD 806 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHH
Confidence 34445666788889999999998767777788889999999999999999999999988888762 23335666
Q ss_pred HHHH-HcccCCCCHHHHHHHHHHHHHhcCC-Cc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcc
Q 048757 445 LVDL-IFKWSSWNDGVLERAAGALANLAAD-DK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSN 521 (864)
Q Consensus 445 L~~l-L~~~~~~~~~v~~~a~~~L~~L~~~-~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~ 521 (864)
+.+. .........+.+..+-.++.++... .+ .... ..-.+...+..++++ +...|..++..++++|...+. .
T Consensus 807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y--~~~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~--~ 881 (982)
T KOG4653|consen 807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKY--KAVLINTFLSGVREP-DHEFRASSLANLGQLCQLLAF--Q 881 (982)
T ss_pred HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHH--HHHHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhh--h
Confidence 6653 2211111123333444555555433 12 1111 113355566666653 567788999999999874110 0
Q ss_pred cchhhhccChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCh-hhHHHHH---HCCChHHHHHHHHhcCCCCHHHHHHHHH
Q 048757 522 NAAVGLETGALEALVQLTF-SKHEGVRQEAAGALWNLSFDD-RNREAIA---AAGGVEALVALVRSCSSSSQGLQERAAG 596 (864)
Q Consensus 522 ~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~~-~~~~~i~---~~~~i~~Lv~lL~~~~~~~~~v~~~A~~ 596 (864)
....+ ...+..++.+.+ ++..-+|++|+..+..+-.+- ..--.+. .......+.....+ .++..++..|..
T Consensus 882 vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~--~~dd~~klhaql 957 (982)
T KOG4653|consen 882 VSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQ--HDDDGLKLHAQL 957 (982)
T ss_pred hhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 00011 123344444444 356779999999998875431 1111111 12233444444444 355566666666
Q ss_pred HHH
Q 048757 597 ALW 599 (864)
Q Consensus 597 aL~ 599 (864)
++-
T Consensus 958 ~le 960 (982)
T KOG4653|consen 958 CLE 960 (982)
T ss_pred HHH
Confidence 654
No 245
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=5.4 Score=43.48 Aligned_cols=158 Identities=15% Similarity=0.057 Sum_probs=95.3
Q ss_pred hhCcHHHHHHHH-cccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcC
Q 048757 438 RAGGIKALVDLI-FKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHG 516 (864)
Q Consensus 438 ~~g~i~~L~~lL-~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~ 516 (864)
+.|.+..++..+ .+..+++..++..|++.|+|.+..-+.+..-...-.+..++.-|-+..+.+|+..+..+|..+....
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 344554444333 3334567789999999999999874332222223346667777777677899999999998887542
Q ss_pred CCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChh--hHHHHHH--CCChHHHHHHHHhcCCCCHHHHH
Q 048757 517 DSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDR--NREAIAA--AGGVEALVALVRSCSSSSQGLQE 592 (864)
Q Consensus 517 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~--~~~~i~~--~~~i~~Lv~lL~~~~~~~~~v~~ 592 (864)
. ++.....+. .+.-.+..+..+.++++|.+|..++..|+.-.. .+..+.+ .+...+|+-.+.+ ++|.+-.
T Consensus 332 ~-~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d---~~p~va~ 405 (533)
T KOG2032|consen 332 S-NDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQD---PNPYVAR 405 (533)
T ss_pred h-hcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCC---CChHHHH
Confidence 2 222222222 334456778889999999999998888876432 2333332 2233444444554 6665544
Q ss_pred HHHHHHHHhc
Q 048757 593 RAAGALWGLS 602 (864)
Q Consensus 593 ~A~~aL~~L~ 602 (864)
|++.....+
T Consensus 406 -ACr~~~~~c 414 (533)
T KOG2032|consen 406 -ACRSELRTC 414 (533)
T ss_pred -HHHHHHHhc
Confidence 444444433
No 246
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=91.98 E-value=24 Score=39.32 Aligned_cols=188 Identities=19% Similarity=0.101 Sum_probs=114.2
Q ss_pred cHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHH----HHHHHHhhcC
Q 048757 441 GIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAA----RALANLVAHG 516 (864)
Q Consensus 441 ~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~----~aL~~L~~~~ 516 (864)
.+..++.+... ..++..+..++.+++.+...-.....+ ...+..+.....+...+..+..+. |....|...+
T Consensus 190 ll~~l~~~~~~--~~~~~~~~~~~~~la~LvNK~~~~~~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 190 LLQSLLNLALS--SEDEFSRLAALQLLASLVNKWPDDDDL--DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCChhhH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 56667777664 445777888888888776441111100 112222222221112233333333 3333333322
Q ss_pred CCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhh-------------HHHHHHCCChHHHHHHHHh
Q 048757 517 DSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRN-------------REAIAAAGGVEALVALVRS 582 (864)
Q Consensus 517 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~-------------~~~i~~~~~i~~Lv~lL~~ 582 (864)
+ + .....+..|+.++.+ +++...|++++.-+..+ ++. ++.+... .+|.|++..+.
T Consensus 266 ~--~------~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~ 334 (415)
T PF12460_consen 266 H--P------LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKE 334 (415)
T ss_pred C--c------hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhh
Confidence 1 1 122456778888866 67788899999888776 321 3333332 57788887776
Q ss_pred cCCCCHHHHHHHHHHHHHhccCchhhHHhhh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCc
Q 048757 583 CSSSSQGLQERAAGALWGLSLSEANSIAIGR-EGGVAPLIALARSAVVDVHETAAGALWNLAFNP 646 (864)
Q Consensus 583 ~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~ 646 (864)
.+.+.+..-..+|.++..+-+......+ ...+|.|++.|..++++++..+..+|..+..+.
T Consensus 335 ---~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 335 ---ADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred ---cChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 5666888889999998877332222222 457888899999999999999999999998644
No 247
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.76 E-value=22 Score=38.72 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=101.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCC-------CHHHHHHHHHHHH
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSP-------PEGLQSEVAKAIA 383 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-------~~~~~~~a~~~L~ 383 (864)
...+..+++..+++-|..|.-....++++++-+ ...++.+.++=+.+.+-++|.+. +.-.+..+...|.
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~----a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLa 88 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIV----ALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLA 88 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchh----hhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHH
Confidence 344667777777777888888888888877654 34567788888899998888652 3345566778888
Q ss_pred HHhCCchhHHHHHhcCcHHHHHHHHcc---CC----HHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcc
Q 048757 384 NLSVDSKVAKAVSENGGIDILADLARS---TN----RLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFK 451 (864)
Q Consensus 384 ~L~~~~~~~~~i~~~g~i~~Lv~lL~~---~~----~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~ 451 (864)
-.+.+|+....---...||.|...+.. .| ..+.+.+-.+|..++..+.....++..|+++.+.+.-.-
T Consensus 89 cFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~ 163 (698)
T KOG2611|consen 89 CFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL 163 (698)
T ss_pred HHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC
Confidence 888888654322223568888888843 22 237888899999999999999999999999999976543
No 248
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.74 E-value=0.37 Score=45.31 Aligned_cols=144 Identities=22% Similarity=0.142 Sum_probs=91.3
Q ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhh-
Q 048757 533 EALVQLTF--SKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANS- 608 (864)
Q Consensus 533 ~~L~~lL~--~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~- 608 (864)
+.++..|. ...+++|..+.-++..+- +..++...+ .+...+..+-. .++.+-...+..++..+-.. ++..
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~--~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLD--EGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHC--CHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHc--cccchhHHHHHHHHHHHhCCCHHHHH
Confidence 34444443 345668888887777662 333332221 12233332222 12333556677777776654 4444
Q ss_pred HHhhhcCCHHHHHHHHc--cCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHH-HHHHHHHHHHH
Q 048757 609 IAIGREGGVAPLIALAR--SAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKM-ARFMAALALAY 683 (864)
Q Consensus 609 ~~i~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~-~r~~aa~aL~~ 683 (864)
..+...|..+.++.+.. +++..++..++.+|..=|.+...|..|.+ .+++.|.++++.+.++. +|..|+.+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 44557888899999998 77888888899888887777766665555 77899999996655566 89999888864
No 249
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=91.63 E-value=0.85 Score=42.85 Aligned_cols=144 Identities=19% Similarity=0.174 Sum_probs=96.4
Q ss_pred HHHHHHHc--cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-C
Q 048757 312 TLLLSLME--SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-D 388 (864)
Q Consensus 312 ~~L~~lL~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~ 388 (864)
+.++..|. ...+++|..+..++..+- +. .+.-...-.-+.+-..+..++.+....+..++..+.. .
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~---------~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~ 74 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLL--DA---------AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGP 74 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHH--HH---------HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHH--HH---------hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence 34555554 356788888888888873 10 1122223333444455566556677788889998887 4
Q ss_pred chhHHHHH-hcCcHHHHHHHHc--cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHH-HHHHHH
Q 048757 389 SKVAKAVS-ENGGIDILADLAR--STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDG-VLERAA 464 (864)
Q Consensus 389 ~~~~~~i~-~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~-v~~~a~ 464 (864)
|+....+. ..|.++.++.++. ..+..++..++++|..-|.++..|..+.+. +++.|-+..+. +.++. ++..|+
T Consensus 75 ~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~--~~~~~~ir~~A~ 151 (157)
T PF11701_consen 75 PDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKN--SKDDSEIRVLAA 151 (157)
T ss_dssp HHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTT--CC-HH-CHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHcc--ccchHHHHHHHH
Confidence 56666666 5566788888887 778899999999999888887777777666 67888888854 45555 677776
Q ss_pred HHHHH
Q 048757 465 GALAN 469 (864)
Q Consensus 465 ~~L~~ 469 (864)
-+|..
T Consensus 152 v~L~K 156 (157)
T PF11701_consen 152 VGLCK 156 (157)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
No 250
>PLN03150 hypothetical protein; Provisional
Probab=91.49 E-value=0.3 Score=57.37 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=24.6
Q ss_pred CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCC
Q 048757 154 NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCP 218 (864)
Q Consensus 154 ~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~ 218 (864)
.+++|+.|+++++. ++.. +......+++|+.|+++++..+-. +...+.++++|+.|++++|.
T Consensus 440 ~L~~L~~L~Ls~N~-l~g~-iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 440 KLRHLQSINLSGNS-IRGN-IPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCCCCEEECCCCc-ccCc-CChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCc
Confidence 45555555555442 2111 111123455555555555222100 11223334455555555544
No 251
>PLN03150 hypothetical protein; Provisional
Probab=91.08 E-value=0.24 Score=58.16 Aligned_cols=106 Identities=17% Similarity=0.108 Sum_probs=65.0
Q ss_pred ccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCC
Q 048757 55 RLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCR 134 (864)
Q Consensus 55 ~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 134 (864)
.++.|+|+++. ++...-.. ...+++|+.|+| +++. ++. .+......+++|+.|+++++. ++...-..+ .+++
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~-i~~L~~L~~L~L--s~N~-l~g-~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l-~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPND-ISKLRHLQSINL--SGNS-IRG-NIPPSLGSITSLEVLDLSYNS-FNGSIPESL-GQLT 490 (623)
T ss_pred EEEEEECCCCC-ccccCCHH-HhCCCCCCEEEC--CCCc-ccC-cCChHHhCCCCCCEEECCCCC-CCCCCchHH-hcCC
Confidence 47788888875 43222222 346789999999 6553 332 222234578999999999986 554322233 4589
Q ss_pred CccEEeccCCCCCC--HHHhc-CCCCcCEEEEeCCCC
Q 048757 135 QLVEVGFIDSGGVD--EAALE-NLSSVRYLSIAGTRN 168 (864)
Q Consensus 135 ~L~~L~l~~c~~i~--~~~~~-~~~~L~~L~l~~c~~ 168 (864)
+|++|+|++|..-. ...+. ...++..+++.++..
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 99999999875211 12222 234667788877643
No 252
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.01 E-value=14 Score=38.91 Aligned_cols=161 Identities=17% Similarity=0.094 Sum_probs=107.9
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc--chHH----
Q 048757 406 DLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK--CSLE---- 479 (864)
Q Consensus 406 ~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~--~~~~---- 479 (864)
..+++.++.+|+.+.++|+-++--+. .+... .++.+...+. .+++.++..|+.++..+..... ....
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~---~~a~~-~l~l~~~~~~---~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~ 106 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDK---ELAKE-HLPLFLQALQ---KDDEEVKITALKALFDLLLTHGIDIFDSESDN 106 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhCh---HHHHH-HHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcCchhccchhcc
Confidence 46688899999999999999876332 12221 3566677774 3588999999999988875422 1111
Q ss_pred ---HHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhc-cChHHHHHHHhcC----CCHHHHHHHH
Q 048757 480 ---VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLE-TGALEALVQLTFS----KHEGVRQEAA 551 (864)
Q Consensus 480 ---i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~-~~~i~~L~~lL~~----~~~~v~~~a~ 551 (864)
.........+.+.+.+. +++++..|++.++.|-..+. +.+ ...+..|+-+.-+ ++..+|..-.
T Consensus 107 ~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~--------i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~ 177 (298)
T PF12719_consen 107 DESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGR--------ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLS 177 (298)
T ss_pred CccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence 12234567788888885 68999999999999987532 122 4555666554333 3466777767
Q ss_pred HHHHHhcCChhhHHHHHHCCChHHHHHHHHh
Q 048757 552 GALWNLSFDDRNREAIAAAGGVEALVALVRS 582 (864)
Q Consensus 552 ~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~ 582 (864)
..+-..+......+......+++.+-.+...
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 7777777775544555556678888887775
No 253
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.98 E-value=0.15 Score=56.48 Aligned_cols=173 Identities=21% Similarity=0.217 Sum_probs=93.3
Q ss_pred CCCcEEEecCCCCchH--HHHhCC-cccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCc
Q 048757 32 TNLQALWFRGALSADA--MIILQA-RRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCP 108 (864)
Q Consensus 32 ~~L~~L~l~~~~~~~~--l~~~~~-~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~ 108 (864)
+.++.|++.+....+- ... .. ++|++|++++.. +.+. ..-...+++|+.|++ +++ ++++ +.......+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~-i~~l--~~~~~~l~~L~~L~l--~~N-~l~~--l~~~~~~~~ 186 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNK-IESL--PSPLRNLPNLKNLDL--SFN-DLSD--LPKLLSNLS 186 (394)
T ss_pred cceeEEecCCcccccCccccc-cchhhcccccccccc-hhhh--hhhhhcccccccccc--CCc-hhhh--hhhhhhhhh
Confidence 5677777777654332 221 33 378888887765 3332 112356788888888 544 3433 222222567
Q ss_pred CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH-HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEE
Q 048757 109 KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE-AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGL 187 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L 187 (864)
+|+.|+++++. +++ +.........|++|.+++...+.. ..+..++++..|.+.+. .+.+. ......+++++.|
T Consensus 187 ~L~~L~ls~N~-i~~--l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~--~~~~~~l~~l~~L 260 (394)
T COG4886 187 NLNNLDLSGNK-ISD--LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDL--PESIGNLSNLETL 260 (394)
T ss_pred hhhheeccCCc-ccc--CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeec--cchhcccccccee
Confidence 88888888876 433 222222344577888877633332 23336666666664332 22220 2233456677888
Q ss_pred ecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 188 DTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 188 ~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
++++...+.-.- +....+++.|++++-.....
T Consensus 261 ~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 261 DLSNNQISSISS---LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cccccccccccc---ccccCccCEEeccCcccccc
Confidence 887722221110 34446777777776555443
No 254
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=3.8 Score=45.14 Aligned_cols=99 Identities=20% Similarity=0.104 Sum_probs=65.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHH-HccCCHHHHHHHHHHHHHhcCCcccHHHHH
Q 048757 575 ALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIAL-ARSAVVDVHETAAGALWNLAFNPGNALCIV 653 (864)
Q Consensus 575 ~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~ 653 (864)
.+-+++.+ .++-+|...+.+++.--.. -.+.+++..|+.. ..+.+.+|++.|+-+|+-.|.+..
T Consensus 520 ~I~ell~d---~ds~lRy~G~fs~alAy~G------Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYD---KDSILRYNGVFSLALAYVG------TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcC---chHHhhhccHHHHHHHHhc------CCcchhHhhhheeecccCchHHHHHHHHheeeeEecCc------
Confidence 33445554 6666777666666531111 1234556666665 467889999999999998887544
Q ss_pred hCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcc
Q 048757 654 EGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRME 690 (864)
Q Consensus 654 ~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~ 690 (864)
..++..+++|..+.++.+|...|.+|+-...|.-+
T Consensus 585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 45677788887777789999888888865555543
No 255
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.85 E-value=0.25 Score=54.79 Aligned_cols=155 Identities=18% Similarity=0.227 Sum_probs=78.8
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCC-CCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHH
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARH-EMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALA 130 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~-~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~ 130 (864)
..+.++.|++.+.. +++ +....... ++|+.|++ + ...+.. +..-...+|+|+.|+++++. +++- ....
T Consensus 114 ~~~~l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l--~-~N~i~~--l~~~~~~l~~L~~L~l~~N~-l~~l--~~~~ 182 (394)
T COG4886 114 ELTNLTSLDLDNNN-ITD--IPPLIGLLKSNLKELDL--S-DNKIES--LPSPLRNLPNLKNLDLSFND-LSDL--PKLL 182 (394)
T ss_pred cccceeEEecCCcc-ccc--Cccccccchhhcccccc--c-ccchhh--hhhhhhccccccccccCCch-hhhh--hhhh
Confidence 44667777776544 322 12222223 36777777 3 223322 11123467777778777776 4432 2222
Q ss_pred hcCCCccEEeccCCCCCCHHHhc--CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCC
Q 048757 131 KQCRQLVEVGFIDSGGVDEAALE--NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRN 208 (864)
Q Consensus 131 ~~~~~L~~L~l~~c~~i~~~~~~--~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 208 (864)
...+.|+.|+++++. +++.... ....|++|++++...+... ....+++++..+.+.+..... +...+..+++
T Consensus 183 ~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~ 256 (394)
T COG4886 183 SNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELL---SSLSNLKNLSGLELSNNKLED--LPESIGNLSN 256 (394)
T ss_pred hhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecc---hhhhhcccccccccCCceeee--ccchhccccc
Confidence 246777777777743 4443333 4445777777765322211 112345566666655522111 0233444566
Q ss_pred CcEEEccCCCCcccc
Q 048757 209 LKVLIALNCPVFEAE 223 (864)
Q Consensus 209 L~~L~~~~c~~~~~~ 223 (864)
++.|+++++......
T Consensus 257 l~~L~~s~n~i~~i~ 271 (394)
T COG4886 257 LETLDLSNNQISSIS 271 (394)
T ss_pred cceeccccccccccc
Confidence 777777666554443
No 256
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.59 E-value=37 Score=40.65 Aligned_cols=227 Identities=18% Similarity=0.138 Sum_probs=128.4
Q ss_pred CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCc----------
Q 048757 429 GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMF---------- 498 (864)
Q Consensus 429 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~---------- 498 (864)
+.+|+..+.++.|+..++.++- +++.|....+++..|...+.-+ ++..-+-.++..|+++-.
T Consensus 673 nteNqklFreanGvklilpfli-----ndehRSslLrivscLitvdpkq---vhhqelmalVdtLksgmvt~Isgeqykl 744 (2799)
T KOG1788|consen 673 NTENQKLFREANGVKLILPFLI-----NDEHRSSLLRIVSCLITVDPKQ---VHHQELMALVDTLKSGMVTRISGEQYKL 744 (2799)
T ss_pred cchhhHHHHhhcCceEEEEeee-----chHHHHHHHHHHHHHhccCccc---ccHHHHHHHHHHHHhcceeccchhHHHH
Confidence 4566666666666666666653 4566666667776665544311 111224456777776311
Q ss_pred -hhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC----------CCHHHHHHHHHHHH-----HhcCChh
Q 048757 499 -EGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS----------KHEGVRQEAAGALW-----NLSFDDR 562 (864)
Q Consensus 499 -~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~v~~~a~~~L~-----~Ls~~~~ 562 (864)
-.......++++.+--. +...+..+.+.+++..|...|.. .|.-+-..-...|. .++.++.
T Consensus 745 hfsllcdlmGalwrivgv---ngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenas 821 (2799)
T KOG1788|consen 745 HFSLLCDLMGALWRIVGV---NGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENAS 821 (2799)
T ss_pred HHHHHHHHHHHHHHHHcc---CchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcch
Confidence 12334556777777643 55667778888888888776642 11112222222222 2233444
Q ss_pred hHHHHHHCCChHHHHHHHHh-----------------------cCCCCHHHHHHHHHHHHHhcc---------C--chhh
Q 048757 563 NREAIAAAGGVEALVALVRS-----------------------CSSSSQGLQERAAGALWGLSL---------S--EANS 608 (864)
Q Consensus 563 ~~~~i~~~~~i~~Lv~lL~~-----------------------~~~~~~~v~~~A~~aL~~L~~---------~--~~~~ 608 (864)
++..+-..-.-+.+..+|.. ..++.-.--..|+..+..+-. . ....
T Consensus 822 NrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk 901 (2799)
T KOG1788|consen 822 NRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDK 901 (2799)
T ss_pred hhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchH
Confidence 44332211111222222221 000111111233333333311 1 2345
Q ss_pred HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhc
Q 048757 609 IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCS 666 (864)
Q Consensus 609 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~ 666 (864)
+.+...|++..|++.+-...|.++..-...+..++. ++.+++.....|.++.|.+++.
T Consensus 902 ~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiy 960 (2799)
T KOG1788|consen 902 QKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIY 960 (2799)
T ss_pred hhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhh
Confidence 778889999999999888889999988899998887 7788888888999999998873
No 257
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.54 E-value=15 Score=40.01 Aligned_cols=124 Identities=11% Similarity=0.117 Sum_probs=91.7
Q ss_pred HHHHHHHHHhh-cCCCCcccchhhhc-cChHHHHHHHhcCC---CHHHHHHHHHHHHHhcCCh-hhHHHHHHCCChHHHH
Q 048757 504 QAARALANLVA-HGDSNSNNAAVGLE-TGALEALVQLTFSK---HEGVRQEAAGALWNLSFDD-RNREAIAAAGGVEALV 577 (864)
Q Consensus 504 ~a~~aL~~L~~-~~~~~~~~~~~~~~-~~~i~~L~~lL~~~---~~~v~~~a~~~L~~Ls~~~-~~~~~i~~~~~i~~Lv 577 (864)
..++.+..+.. .+. ..+.-.-+.+ ......|...+++. -+.+-..|+.++..+-.++ ..-..+.+.|.++.++
T Consensus 79 ~lLk~l~~~~~~~~~-~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 79 SLLKFLSHAMQHSGG-FGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHHHHHhccCCC-cccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 44555556665 333 2222233444 55566677777765 3568888999999887775 4567777889999999
Q ss_pred HHHH-hcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCC
Q 048757 578 ALVR-SCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAV 628 (864)
Q Consensus 578 ~lL~-~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~ 628 (864)
+.+. ..-.++.++....-.+|+.+|-+....+.+.+.+.++.+++.+.+++
T Consensus 158 ~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 158 DAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHH
Confidence 9988 53456788888889999999999999999999999999999997643
No 258
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.45 E-value=12 Score=43.97 Aligned_cols=165 Identities=19% Similarity=0.055 Sum_probs=94.3
Q ss_pred cHHHHHHHHHcc---CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhc----CCCHHHHHHHHHHHHHh
Q 048757 485 GVHALVMLARSF---MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTF----SKHEGVRQEAAGALWNL 557 (864)
Q Consensus 485 ~i~~Lv~ll~~~---~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~a~~~L~~L 557 (864)
.+..+..+++++ ..+.++..|.-++..+....-.+........-...++.+.+.|. ..+.+.+..++.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 355666777653 23556777777777776521111111101112245566665553 34566677788999998
Q ss_pred cCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc--CCHHHHHHH
Q 048757 558 SFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS--AVVDVHETA 635 (864)
Q Consensus 558 s~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~--~~~~v~~~a 635 (864)
... ..++.+..++......++.+|..|+++|..++... ...+-+.|+.++.+ .++++|..|
T Consensus 474 g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~-------p~~v~~~l~~i~~n~~e~~EvRiaA 536 (574)
T smart00638 474 GHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRD-------PRKVQEVLLPIYLNRAEPPEVRMAA 536 (574)
T ss_pred CCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhC-------chHHHHHHHHHHcCCCCChHHHHHH
Confidence 332 23455555555223457889999999999765321 11234557777754 557788877
Q ss_pred HHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHH
Q 048757 636 AGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARF 675 (864)
Q Consensus 636 ~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~ 675 (864)
..+|...- |. ...+..+...+..+.+..|+.
T Consensus 537 ~~~lm~t~--P~-------~~~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 537 VLVLMETK--PS-------VALLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHhcC--CC-------HHHHHHHHHHHhhcCcHHHHH
Confidence 77665542 22 234567777776655455543
No 259
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.22 E-value=12 Score=43.88 Aligned_cols=138 Identities=19% Similarity=0.037 Sum_probs=82.3
Q ss_pred cHHHHHHHHccc-CCCCHHHHHHHHHHHHHhcC----CCcchHHHHhcCcHHHHHHHHHcc---CchhHHHHHHHHHHHH
Q 048757 441 GIKALVDLIFKW-SSWNDGVLERAAGALANLAA----DDKCSLEVARAGGVHALVMLARSF---MFEGVQEQAARALANL 512 (864)
Q Consensus 441 ~i~~L~~lL~~~-~~~~~~v~~~a~~~L~~L~~----~~~~~~~i~~~~~i~~Lv~ll~~~---~~~~v~~~a~~aL~~L 512 (864)
.+..+.++++.. ......++..|.-+++++.. +.+..........++.+...+... .+.+.+...+.||+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 455666666531 12344566666666666543 222111112233556666665432 2344566788999998
Q ss_pred hhcCCCCcccchhhhccChHHHHHHHhc-C--CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHH
Q 048757 513 VAHGDSNSNNAAVGLETGALEALVQLTF-S--KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQG 589 (864)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~--~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~ 589 (864)
... ..++.+...+. . .+..+|..|+.+|..++.... ..+.+.+..+..+ ...+++
T Consensus 474 g~~--------------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l~~i~~n-~~e~~E 531 (574)
T smart00638 474 GHP--------------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-------RKVQEVLLPIYLN-RAEPPE 531 (574)
T ss_pred CCh--------------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHcC-CCCChH
Confidence 862 35566666665 2 356799999999998864321 1234566667665 357889
Q ss_pred HHHHHHHHHHH
Q 048757 590 LQERAAGALWG 600 (864)
Q Consensus 590 v~~~A~~aL~~ 600 (864)
+|..|..+|..
T Consensus 532 vRiaA~~~lm~ 542 (574)
T smart00638 532 VRMAAVLVLME 542 (574)
T ss_pred HHHHHHHHHHh
Confidence 99999988864
No 260
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.22 E-value=0.23 Score=29.70 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=10.4
Q ss_pred CCCcceEEeccCCCCCCCHHHHHHHH
Q 048757 79 HEMLEILHFGLDVCDRISSDAIKTVA 104 (864)
Q Consensus 79 ~~~L~~L~l~~~~c~~i~~~~l~~l~ 104 (864)
|++|++|+| ++|. |+++++..++
T Consensus 1 ~~~L~~L~l--~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDL--SNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE---TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEc--cCCc-CCHHHHHHhC
Confidence 345555555 4443 5555555543
No 261
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=1.2 Score=48.92 Aligned_cols=133 Identities=18% Similarity=0.108 Sum_probs=93.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHH-HHhcCCCCHHHHHHHHHHHHHhccCchhhHHhh
Q 048757 534 ALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVAL-VRSCSSSSQGLQERAAGALWGLSLSEANSIAIG 612 (864)
Q Consensus 534 ~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~l-L~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~ 612 (864)
.+-+++.+.++-+|...+-+++-- .... .+.+++..++.. +.+ .+.++|++|+-+|+-.|..+.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alA-y~GT-----gn~~vv~~lLh~avsD---~nDDVrRAAViAlGfvc~~D~------ 584 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALA-YVGT-----GNLGVVSTLLHYAVSD---GNDDVRRAAVIALGFVCCDDR------ 584 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHH-HhcC-----CcchhHhhhheeeccc---CchHHHHHHHHheeeeEecCc------
Confidence 444567777777777666555421 1111 123566666666 444 899999999999998776533
Q ss_pred hcCCHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcc
Q 048757 613 REGGVAPLIALA-RSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRME 690 (864)
Q Consensus 613 ~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~ 690 (864)
..++..+++| ++.++.||...+.+|+-.|.....+ -++..|-.++.+++ .-+|+.|..+++-+-....+
T Consensus 585 --~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~------~a~diL~~L~~D~~-dfVRQ~AmIa~~mIl~Q~n~ 654 (926)
T COG5116 585 --DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK------VATDILEALMYDTN-DFVRQSAMIAVGMILMQCNP 654 (926)
T ss_pred --chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH------HHHHHHHHHhhCcH-HHHHHHHHHHHHHHHhhcCc
Confidence 3455666666 4678999999999999998877655 45677888888886 78999999999877665553
No 262
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=89.92 E-value=17 Score=40.21 Aligned_cols=178 Identities=16% Similarity=0.125 Sum_probs=117.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCC-CCHHHHHHHHHHHHHhcCCCcchHH
Q 048757 401 IDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSS-WNDGVLERAAGALANLAADDKCSLE 479 (864)
Q Consensus 401 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~-~~~~v~~~a~~~L~~L~~~~~~~~~ 479 (864)
...+.+.+.+++...+..+..-|..++.++.....++...++..|.+++++... ...++.....+++..+-...-....
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 345677777888887777999999999999999999999999999999985211 1335555555555555433222222
Q ss_pred HHhcCcHHHHHHHHHcc-CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 048757 480 VARAGGVHALVMLARSF-MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLS 558 (864)
Q Consensus 480 i~~~~~i~~Lv~ll~~~-~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls 558 (864)
.....+|.....+.... .+..+-..|+..|..+... .+..+..+.++--+..|++.++..+..++..|...+..+-
T Consensus 165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~---s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLG---SDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhC---ChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 22333444444444221 1245566788888888764 4456788888889999999999999999988887777664
Q ss_pred CC--hhhHHHHHHCCChHHHHHHHH
Q 048757 559 FD--DRNREAIAAAGGVEALVALVR 581 (864)
Q Consensus 559 ~~--~~~~~~i~~~~~i~~Lv~lL~ 581 (864)
.. ++-|..+.+.-...++...+.
T Consensus 242 ~~a~~~~R~~~~~~l~~~~~R~ai~ 266 (713)
T KOG2999|consen 242 RKAPDDKRFEMAKSLEQKQFRNAIH 266 (713)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHH
Confidence 43 334555555433444444444
No 263
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=89.36 E-value=53 Score=38.96 Aligned_cols=303 Identities=15% Similarity=0.080 Sum_probs=167.6
Q ss_pred cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhCCchhHHHHHhc
Q 048757 320 SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA-RSPPEGLQSEVAKAIANLSVDSKVAKAVSEN 398 (864)
Q Consensus 320 ~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~ 398 (864)
++.|....++..++...+.....+ ++ +. ...+...+..+ .+..+-++..|+++++..+... .... ...
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~----~~----~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl~~-~~p 529 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVIN----PQ----LL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVK-VLLS-LQP 529 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccc----hh----HH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCce-eccc-cch
Confidence 345666667788877665433221 11 11 11223333333 3455667777888777766321 1111 123
Q ss_pred CcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchH
Q 048757 399 GGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSL 478 (864)
Q Consensus 399 g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~ 478 (864)
+.+..|.++......++.-...++|...+..+.-.....+....|..+.+..+ .++++.+...+-.++-.++....+..
T Consensus 530 ~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k-~s~DP~V~~~~qd~f~el~q~~~~~g 608 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLK-YSEDPQVASLAQDLFEELLQIAANYG 608 (1005)
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHhhc
Confidence 45677778877788888888899999887755444455566677777777665 34566666666666666655333222
Q ss_pred HHHhcCcHHHHHHHHHccC---chhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHH-hcCCCHHHHHHHHHHH
Q 048757 479 EVARAGGVHALVMLARSFM---FEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL-TFSKHEGVRQEAAGAL 554 (864)
Q Consensus 479 ~i~~~~~i~~Lv~ll~~~~---~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L 554 (864)
.+ ....+|.++..+.... +......++..|..+-+... ++ .-.. .-.-++|++.+. +++.+.+....+-++|
T Consensus 609 ~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp-~p-L~~~-l~~~~FpaVak~tlHsdD~~tlQ~~~EcL 684 (1005)
T KOG2274|consen 609 PM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTP-SP-LPNL-LICYAFPAVAKITLHSDDHETLQNATECL 684 (1005)
T ss_pred ch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCC-CC-ccHH-HHHHHhHHhHhheeecCChHHHHhHHHHH
Confidence 22 2346899999997742 25556667777776766543 22 2222 223567777776 7778888999999999
Q ss_pred HHhcCCh-hh-HHHHHHCCC-----hHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--chhhHHhhhc--CCHH-HHHH
Q 048757 555 WNLSFDD-RN-REAIAAAGG-----VEALVALVRSCSSSSQGLQERAAGALWGLSLS--EANSIAIGRE--GGVA-PLIA 622 (864)
Q Consensus 555 ~~Ls~~~-~~-~~~i~~~~~-----i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~~~~~~i~~~--~~i~-~Lv~ 622 (864)
+.+-... +. ...-.+.|. +..+-++|. |+.-..++.-.+.+... ...-..++.. ..+. .+.+
T Consensus 685 ra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd------p~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisr 758 (1005)
T KOG2274|consen 685 RALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD------PETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISR 758 (1005)
T ss_pred HHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcC------CccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 8775542 21 111122221 233333443 33334444444433211 0000111110 0112 2334
Q ss_pred HHccCCHHHHHHHHHHHHHhcC
Q 048757 623 LARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 623 lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
+-+.+...+...-+.+++.|..
T Consensus 759 mq~ae~lsviQsLi~VfahL~~ 780 (1005)
T KOG2274|consen 759 LQQAETLSVIQSLIMVFAHLVH 780 (1005)
T ss_pred HHHhhhHHHHHHHHHHHHHHhh
Confidence 4445667777777788888865
No 264
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=9.5 Score=44.51 Aligned_cols=179 Identities=10% Similarity=-0.063 Sum_probs=109.3
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHH
Q 048757 408 ARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVH 487 (864)
Q Consensus 408 L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~ 487 (864)
+.++-+.++..++..|..+....+....+...+.+....+.+++ .+.-+--+|...+..||.. .....+|
T Consensus 736 l~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd---edsyvyLnaI~gv~~Lcev-------y~e~il~ 805 (982)
T KOG4653|consen 736 LHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD---EDSYVYLNAIRGVVSLCEV-------YPEDILP 805 (982)
T ss_pred hcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc---cCceeeHHHHHHHHHHHHh-------cchhhHH
Confidence 44555668888888999988877777778888899999999974 5555666777766666543 2334456
Q ss_pred HHHHHHHccC-c--hhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhh-
Q 048757 488 ALVMLARSFM-F--EGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRN- 563 (864)
Q Consensus 488 ~Lv~ll~~~~-~--~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~- 563 (864)
.|.+.-.+.+ . ++.+...-+|+.++...- + +...... ...+...+...++++...|..++..+++++.--..
T Consensus 806 dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~--G-el~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 806 DLSEEYLSEKKKLQTDYRLKVGEAILKVAQAL--G-ELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred HHHHHHHhcccCCCccceehHHHHHHHHHHHh--c-cHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 5655332211 1 233334445555555421 1 1111111 13445556666777777899999999988653221
Q ss_pred -HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 048757 564 -REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS 604 (864)
Q Consensus 564 -~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~ 604 (864)
...+ ......++.+.+. .+++-+|++|+..+..+-.+
T Consensus 882 vsd~~--~ev~~~Il~l~~~--d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 882 VSDFF--HEVLQLILSLETT--DGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred hhHHH--HHHHHHHHHHHcc--CCchhhHHHHHHHHHHHHhc
Confidence 1111 1234555556654 57889999999999877654
No 265
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=88.35 E-value=2.6 Score=49.85 Aligned_cols=164 Identities=21% Similarity=0.125 Sum_probs=90.4
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh--hhHHHHHHCCChHHHHHHHHhc-CCCCHHHHHHHHHHHHHhccC--
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVALVRSC-SSSSQGLQERAAGALWGLSLS-- 604 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~v~~~A~~aL~~L~~~-- 604 (864)
.++..+.+++.+.... -..|...|..+.... +..+ .+..+..+++.. ...++.++..|+.+++.+...
T Consensus 395 ~av~~i~~~I~~~~~~-~~ea~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 395 PAVKFIKDLIKSKKLT-DDEAAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHTT-S--HHHHHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCC-HHHHHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 3556666666653322 223444555543322 1111 234444444421 014677888888888887632
Q ss_pred -c-------hhhHHhhhcCCHHHHHHHHc----cCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCC--Cc
Q 048757 605 -E-------ANSIAIGREGGVAPLIALAR----SAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSS--LS 670 (864)
Q Consensus 605 -~-------~~~~~i~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~--~~ 670 (864)
. ...........++.+...+. .++.+.+..++.+|+|+.. ...++.|..++.+. .+
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccc
Confidence 1 11122233445666666665 4567888899999999973 35778888888665 35
Q ss_pred HHHHHHHHHHHHHhhcCCcccee-eecccccCCCcccchHH
Q 048757 671 KMARFMAALALAYIVDGRMEDIA-SIGSSLEGTSESENLDV 710 (864)
Q Consensus 671 ~~~r~~aa~aL~~l~~~~~~~~~-~~~~ll~~~~~~v~~~~ 710 (864)
..+|..|++||..+....++.+. .+.++..+.........
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRi 578 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRI 578 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHH
Confidence 78999999999988877775543 44445555554444333
No 266
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=87.98 E-value=2.1 Score=33.96 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhC
Q 048757 375 QSEVAKAIANLSVDSKVAKAVSENGGIDILADLAR-STNRLVAEEVVGGLWNLSVGEDHKGAIARAG 440 (864)
Q Consensus 375 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g 440 (864)
.+.+++++++++..+..-..+.+.+.++.++++.. ++...+|-.|..+|+-++.+++..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 46799999999999888888888899999999886 5667899999999999999887777666554
No 267
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=87.53 E-value=0.018 Score=52.79 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=32.3
Q ss_pred CCCccEEeccCCCCCCHHHhc----CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCC
Q 048757 133 CRQLVEVGFIDSGGVDEAALE----NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRN 208 (864)
Q Consensus 133 ~~~L~~L~l~~c~~i~~~~~~----~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 208 (864)
+|.|+.||+++. ++++..+- .+..|+-|.++.... +.+..=..++++|+.|.+...| .-.+.+-+..+..
T Consensus 101 ~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndf---e~lp~dvg~lt~lqil~lrdnd--ll~lpkeig~lt~ 174 (264)
T KOG0617|consen 101 FPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDF---EILPPDVGKLTNLQILSLRDND--LLSLPKEIGDLTR 174 (264)
T ss_pred Cchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCc---ccCChhhhhhcceeEEeeccCc--hhhCcHHHHHHHH
Confidence 455666666552 34443333 334444444433210 1111112345555555554322 2222233333344
Q ss_pred CcEEEccCC
Q 048757 209 LKVLIALNC 217 (864)
Q Consensus 209 L~~L~~~~c 217 (864)
|+.|++.+.
T Consensus 175 lrelhiqgn 183 (264)
T KOG0617|consen 175 LRELHIQGN 183 (264)
T ss_pred HHHHhcccc
Confidence 555555544
No 268
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=87.35 E-value=56 Score=36.78 Aligned_cols=106 Identities=22% Similarity=0.208 Sum_probs=74.0
Q ss_pred hCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC---CCCcH
Q 048757 357 HGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV---GEDHK 433 (864)
Q Consensus 357 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~---~~~~~ 433 (864)
.|.+..+++.+.+++..|+..++..|+-++..-.--....-.|-+..|.+-+-+..+.|+..|+.+|..+-. +++++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 567788888899999999999999999988743222223334556666665667788999999999998754 33332
Q ss_pred HHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC
Q 048757 434 GAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADD 474 (864)
Q Consensus 434 ~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~ 474 (864)
....|+.+++. +++.+||..|. .|+..++
T Consensus 170 -------~~n~l~~~vqn--DPS~EVRr~al---lni~vdn 198 (885)
T COG5218 170 -------IVNLLKDIVQN--DPSDEVRRLAL---LNISVDN 198 (885)
T ss_pred -------HHHHHHHHHhc--CcHHHHHHHHH---HHeeeCC
Confidence 23466777775 67788887654 4555444
No 269
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=86.70 E-value=3.1 Score=40.46 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=62.7
Q ss_pred hHHHHHHhCCHHHHHHHhcC---------CCHHHHHHHHHHHHHHhCCchhHHHHHh-cCcHHHHHHHHccCCHHHHHHH
Q 048757 350 RAEAILRHGGVRLLLDLARS---------PPEGLQSEVAKAIANLSVDSKVAKAVSE-NGGIDILADLARSTNRLVAEEV 419 (864)
Q Consensus 350 ~~~~i~~~~~i~~L~~lL~~---------~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a 419 (864)
....+.+.||+..|+..|.. .+...+..++.++..+..+..+...+.. .+.+..|+..|.+++..++..+
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~ 178 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLA 178 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHH
Confidence 45678889999999988852 3457888999999999998877777666 5669999999999999999999
Q ss_pred HHHHHHhc
Q 048757 420 VGGLWNLS 427 (864)
Q Consensus 420 ~~aL~~Ls 427 (864)
+.+|..+|
T Consensus 179 leiL~~lc 186 (187)
T PF06371_consen 179 LEILAALC 186 (187)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 270
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=86.65 E-value=0.033 Score=51.12 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=62.8
Q ss_pred CcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCC-CCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCc
Q 048757 107 CPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSG-GVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLV 185 (864)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~-~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~ 185 (864)
+.+|+.|+++++. +++ +..-...+|+|+.|+++-.. ++...+++.+|-|+.||+++. ++.+..+..-.-.+..|+
T Consensus 55 l~nlevln~~nnq-ie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 55 LKNLEVLNLSNNQ-IEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLR 130 (264)
T ss_pred hhhhhhhhcccch-hhh--cChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHH
Confidence 4566666666654 322 22222346777777775322 244556678888888888774 444433221111234455
Q ss_pred EEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 186 GLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 186 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
.|.++ |..++.+..-+..+.+|+.|.+.+...++-.
T Consensus 131 alyl~--dndfe~lp~dvg~lt~lqil~lrdndll~lp 166 (264)
T KOG0617|consen 131 ALYLG--DNDFEILPPDVGKLTNLQILSLRDNDLLSLP 166 (264)
T ss_pred HHHhc--CCCcccCChhhhhhcceeEEeeccCchhhCc
Confidence 55554 3445555555666778888888777766544
No 271
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=86.45 E-value=2.8 Score=48.95 Aligned_cols=145 Identities=15% Similarity=0.038 Sum_probs=95.8
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHH--CCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-ch
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAA--AGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EA 606 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~ 606 (864)
..+|.|++..++....++..-..+|.++-.+-+. +.+.. ....|.|++.|.- +|..+|..+..++..+... +.
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~---~D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSM---PDVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCC---CccchhhhHhhhhhHHHHhccc
Confidence 6788888888877777777777888877555322 22221 2345666666664 8899999999998876543 22
Q ss_pred hhHHhhhcCCHHHHHHHHccCC---HHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHH
Q 048757 607 NSIAIGREGGVAPLIALARSAV---VDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALA 680 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL~~~~---~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~a 680 (864)
.. .-.-.-.+|.++.+-.+.+ ..||..|..+|..|.. -|...-.-.+..++..|...|.++. ..+|..|+.+
T Consensus 943 L~-t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkK-RlVR~eAv~t 1018 (1030)
T KOG1967|consen 943 LQ-TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKK-RLVRKEAVDT 1018 (1030)
T ss_pred cc-hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHH-HHHHHHHHHH
Confidence 21 1111235666666665555 5688899999999988 4444334445567888899998775 6788877754
No 272
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.93 E-value=2.3 Score=48.04 Aligned_cols=97 Identities=15% Similarity=0.168 Sum_probs=64.7
Q ss_pred hhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 048757 308 RQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 308 ~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
+..+..++.+.+++|..||..|...|-.+|.++.+.. ..+...|+++|.++++.....+-.+|..+..
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v------------~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~ 125 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV------------SKVADVLVQLLQTDDPVELDAVKNSLMSLLK 125 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H------------HHHHHHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH------------hHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence 4668999999999999999999999999998765442 3456789999999888777777777777554
Q ss_pred -CchhHHHHHhcCcHHHHHHHHc---cCCHHHHHHHHHHHH
Q 048757 388 -DSKVAKAVSENGGIDILADLAR---STNRLVAEEVVGGLW 424 (864)
Q Consensus 388 -~~~~~~~i~~~g~i~~Lv~lL~---~~~~~v~~~a~~aL~ 424 (864)
++ .+.+..+...+. +.++.+++.+...|.
T Consensus 126 ~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 126 QDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp H-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred cCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 33 233455555554 567788999887774
No 273
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.68 E-value=15 Score=44.59 Aligned_cols=138 Identities=18% Similarity=0.216 Sum_probs=104.3
Q ss_pred HHHHHHHHcc----CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 048757 311 ATLLLSLMES----SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANL 385 (864)
Q Consensus 311 v~~L~~lL~~----~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L 385 (864)
.|.+++..+. .||++|..|..+|+.+...+. -.-...+|.|+..+. ++++.+|..++-+++.+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa------------~fces~l~llftimeksp~p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISA------------EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDL 988 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH------------HHHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence 5888888853 579999999999999864442 223567889999986 79999999999999998
Q ss_pred hC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 386 SV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 386 ~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
+. .|..- ..--+.|.+-|.+.++.+++.|..+|.+|-.++ +|.-.|.+..++.+|. +++.+++..|-
T Consensus 989 av~fpnli-----e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~---D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 989 AVRFPNLI-----EPWTEHLYRRLRDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLE---DPNAEISDLAK 1056 (1251)
T ss_pred hhhccccc-----chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhc---CCcHHHHHHHH
Confidence 86 23211 122345778889999999999999999986543 4556788999999997 47778877666
Q ss_pred HHHHHhcC
Q 048757 465 GALANLAA 472 (864)
Q Consensus 465 ~~L~~L~~ 472 (864)
..+..|+.
T Consensus 1057 ~FF~Els~ 1064 (1251)
T KOG0414|consen 1057 SFFKELSS 1064 (1251)
T ss_pred HHHHHhhh
Confidence 66655543
No 274
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.56 E-value=1.3 Score=49.01 Aligned_cols=91 Identities=19% Similarity=0.197 Sum_probs=65.0
Q ss_pred HHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhc--CCCCcCEEEEeCCCCCCHH--
Q 048757 99 AIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALE--NLSSVRYLSIAGTRNLNWS-- 172 (864)
Q Consensus 99 ~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~--~~~~L~~L~l~~c~~~~~~-- 172 (864)
.+..+....|.+..++++++.-..-+.+..+++..|+|..|+|++... -++..+. ....|++|.+.|.+-.++.
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhh
Confidence 345666778999999999988666778888999999999999999732 2233333 5667899999886544432
Q ss_pred ---HHHHHHhcCCCCcEEec
Q 048757 173 ---SAAIAWSKLTSLVGLDT 189 (864)
Q Consensus 173 ---~l~~l~~~~~~L~~L~l 189 (864)
-+.++...+|+|..||=
T Consensus 289 ~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hHHHHHHHHHhcchheeecC
Confidence 34556667777776653
No 275
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.42 E-value=27 Score=41.70 Aligned_cols=278 Identities=17% Similarity=0.181 Sum_probs=146.7
Q ss_pred HHHHHHHHhhCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh
Q 048757 288 SHSLMRISKKNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA 367 (864)
Q Consensus 288 ~~~l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL 367 (864)
.+.+..++.+|.+....|....|+..++..+-+ ++-|..-...+..|...+... ++...+-.++..|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkq-----------vhhqelmalVdtL 729 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQ-----------VHHQELMALVDTL 729 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCccc-----------ccHHHHHHHHHHH
Confidence 455777788888887777777888878777732 334444455555554333221 1234556677777
Q ss_pred cCCC------------HHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHcc----------CCHHHHHHHHHHHH
Q 048757 368 RSPP------------EGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARS----------TNRLVAEEVVGGLW 424 (864)
Q Consensus 368 ~~~~------------~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~v~~~a~~aL~ 424 (864)
+++- .........+++.+.. +...+..+.+.+|...|...|.. +|..+-..-...|.
T Consensus 730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilF 809 (2799)
T KOG1788|consen 730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILF 809 (2799)
T ss_pred HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHH
Confidence 7631 1233456677777765 66788899999999888877632 11111111122222
Q ss_pred Hh-----cCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHH-HccCc
Q 048757 425 NL-----SVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLA-RSFMF 498 (864)
Q Consensus 425 ~L-----s~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll-~~~~~ 498 (864)
.+ +.++.|+..+...=--+.+..+|+. ++- ++.+ ..+ ..|..+.++- +.-.+
T Consensus 810 rlfTlavcenasNrmklhtvITsqtftsLLre--sgl-------------lcvn-ler------~viqlllElalevlvp 867 (2799)
T KOG1788|consen 810 RLFTLAVCENASNRMKLHTVITSQTFTSLLRE--SGL-------------LCVN-LER------HVIQLLLELALEVLVP 867 (2799)
T ss_pred HHHHHHHhhcchhhhheeeeeeHHHHHHHHHH--hcc-------------ceec-chH------HHHHHHHHHHHHhhCC
Confidence 22 2233343333222112233333321 010 0000 000 0111121111 11011
Q ss_pred hhHH--HHHHHHHHHHhh--------cCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHH
Q 048757 499 EGVQ--EQAARALANLVA--------HGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAI 567 (864)
Q Consensus 499 ~~v~--~~a~~aL~~L~~--------~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i 567 (864)
+.+. ..|+..+-.+-. .+. .....+.+...|++..+++.+-...++++.+-...+..++.- +.+.+..
T Consensus 868 pfLtSEsaAcaeVfelednifavntPsGq-fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaell 946 (2799)
T KOG1788|consen 868 PFLTSESAACAEVFELEDNIFAVNTPSGQ-FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELL 946 (2799)
T ss_pred chhhhhHHHHHHHhhcccceeeeccCCCC-cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhh
Confidence 1111 112222222211 011 112345677889999999998788888999989999888875 5566666
Q ss_pred HHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 048757 568 AAAGGVEALVALVRSCSSSSQGLQERAAGALWGL 601 (864)
Q Consensus 568 ~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L 601 (864)
...|+++.|++++..-.+++......|..++.-|
T Consensus 947 tS~gcvellleIiypflsgsspfLshalkIvemL 980 (2799)
T KOG1788|consen 947 TSAGCVELLLEIIYPFLSGSSPFLSHALKIVEML 980 (2799)
T ss_pred hcccHHHHHHHHhhhhhcCCchHhhccHHHHHHH
Confidence 7789999999988753344444555555544443
No 276
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=26 Score=42.75 Aligned_cols=223 Identities=15% Similarity=0.100 Sum_probs=123.1
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCcHHHHHhh--CcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcH
Q 048757 410 STNRLVAEEVVGGLWNLSVGEDHKGAIARA--GGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGV 486 (864)
Q Consensus 410 ~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i 486 (864)
+.+..+|..+-+.|..++..+.......+. .....|.+-++ +.....+.....+|..|-.... ....++. ..|
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q---s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k~I 740 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ---SSSSPAQASRLKCLKRLLKLLSAEHCDLIP-KLI 740 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHhccHHHHHHHH-HHH
Confidence 447789999999999998765433322211 12223333333 3444566667777766654432 1111211 234
Q ss_pred HHHHHHHHccCchhHHHHHHHHHHHHhhcCCC--CcccchhhhccChHHHHHHHhcCC--CHHHHHHH--HHHHHHhcCC
Q 048757 487 HALVMLARSFMFEGVQEQAARALANLVAHGDS--NSNNAAVGLETGALEALVQLTFSK--HEGVRQEA--AGALWNLSFD 560 (864)
Q Consensus 487 ~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~--~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a--~~~L~~Ls~~ 560 (864)
+.++-.++. .+...+..+-.+|..++..... ..+.+ ....+...+..+... ....+..+ .-++..+...
T Consensus 741 ~EvIL~~Ke-~n~~aR~~Af~lL~~i~~i~~~~d~g~e~----~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e 815 (1176)
T KOG1248|consen 741 PEVILSLKE-VNVKARRNAFALLVFIGAIQSSLDDGNEP----ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE 815 (1176)
T ss_pred HHHHHhccc-ccHHHHhhHHHHHHHHHHHHhhhcccccc----hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence 444444455 4577888999999988831000 00001 012344444443322 22222222 3333333222
Q ss_pred hhh-HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHH
Q 048757 561 DRN-REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGA 638 (864)
Q Consensus 561 ~~~-~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~a 638 (864)
..+ -....-.+.++.+..+|.+ .+++++..|++.+..+... ++..-.......++.+..++++....++..+-..
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s---~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLAS---NSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111 1111112345555556665 8999999999999988876 6554444445578888888888889999988888
Q ss_pred HHHhcC
Q 048757 639 LWNLAF 644 (864)
Q Consensus 639 L~~L~~ 644 (864)
|-.|..
T Consensus 893 lekLir 898 (1176)
T KOG1248|consen 893 LEKLIR 898 (1176)
T ss_pred HHHHHH
Confidence 888874
No 277
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.25 E-value=5.1 Score=45.30 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=82.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-chh
Q 048757 313 LLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD-SKV 391 (864)
Q Consensus 313 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~ 391 (864)
.++...+ .++.++.-|+..+......-.+. ...++..++.++.+++..+|..|.+.|-.+|.+ ++.
T Consensus 27 ~il~~~k-g~~k~K~Laaq~I~kffk~FP~l------------~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~ 93 (556)
T PF05918_consen 27 EILDGVK-GSPKEKRLAAQFIPKFFKHFPDL------------QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEH 93 (556)
T ss_dssp HHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG------------HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-
T ss_pred HHHHHcc-CCHHHHHHHHHHHHHHHhhChhh------------HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHH
Confidence 3444444 46889999999999977555432 256789999999999999999999999999985 555
Q ss_pred HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 392 AKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 392 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
...+ ...|+++|.++++.-...+-.+|..+-..+ -.+.+..+...+....++++.+|+.+...|.
T Consensus 94 v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 94 VSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 5444 467999999888776666666666653211 2234555555554222466778888887664
No 278
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=85.03 E-value=4.4 Score=48.85 Aligned_cols=140 Identities=19% Similarity=0.137 Sum_probs=103.3
Q ss_pred HHHHHHHHHcc---CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCh
Q 048757 486 VHALVMLARSF---MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTF-SKHEGVRQEAAGALWNLSFDD 561 (864)
Q Consensus 486 i~~Lv~ll~~~---~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~~ 561 (864)
.|.+++..+.+ ++|++|.+|.-||+.+..- ..+ ......|.|+..++ ++++-+|.+++-+++.++..-
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i---Sa~-----fces~l~llftimeksp~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCI---SAE-----FCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh---hHH-----HHHHHHHHHHHHHhcCCCceeeecchheccchhhhc
Confidence 44555555432 4588999999999988753 111 12345688999887 789999999999999997653
Q ss_pred hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 048757 562 RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWN 641 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~ 641 (864)
++- + ...-+.|.+-|.+ .++.+|..|..+|.+|-.++. +.-.|.+..+..++.++++.++..|-.....
T Consensus 993 pnl---i-e~~T~~Ly~rL~D---~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 993 PNL---I-EPWTEHLYRRLRD---ESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred ccc---c-chhhHHHHHHhcC---ccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 321 1 1234566677776 899999999999999876653 3346888999999999999999999877777
Q ss_pred hcC
Q 048757 642 LAF 644 (864)
Q Consensus 642 L~~ 644 (864)
|+.
T Consensus 1062 ls~ 1064 (1251)
T KOG0414|consen 1062 LSS 1064 (1251)
T ss_pred hhh
Confidence 764
No 279
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=84.34 E-value=3.2 Score=34.83 Aligned_cols=75 Identities=15% Similarity=0.031 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHH
Q 048757 585 SSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIH 663 (864)
Q Consensus 585 ~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ 663 (864)
++.+.+|..++..|..|..... .......+.+..+...|+++++.|-.+|+..|..|+. +++ .+++.|++
T Consensus 14 dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--------~vl~~L~~ 84 (92)
T PF10363_consen 14 DPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--------EVLPILLD 84 (92)
T ss_pred CCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH--------HHHHHHHH
Confidence 3778899999999999987755 2233345677788889999999999999999999986 332 45667776
Q ss_pred HhcCC
Q 048757 664 LCSSS 668 (864)
Q Consensus 664 ll~~~ 668 (864)
...+.
T Consensus 85 ~y~~~ 89 (92)
T PF10363_consen 85 EYADP 89 (92)
T ss_pred HHhCc
Confidence 65443
No 280
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.80 E-value=6.1 Score=38.31 Aligned_cols=149 Identities=16% Similarity=0.031 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHH----ccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHH
Q 048757 460 LERAAGALANLAADDKCSLEVARAGGVHALVMLAR----SFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEAL 535 (864)
Q Consensus 460 ~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~----~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L 535 (864)
...|...|-.++..++.+..+.+....-.+...+. +.+.+.+|..+++.++.|..++ .++....+....++|.+
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNd--sq~vi~fLltTeivPLc 194 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKND--SQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCC--CHHHHHHHHhhhHHHHH
Confidence 34666777777778888877777765444444443 2345678889999999998864 45667777888999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHC--------CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchh
Q 048757 536 VQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAA--------GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEAN 607 (864)
Q Consensus 536 ~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~--------~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~ 607 (864)
++.++..++--+.-|+.++..+-.++.+-+.+.+. .....++.-+-+ .++..+...+.++-..|+.++..
T Consensus 195 LrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs--~~~~RLlKh~iRcYlRLsd~p~a 272 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVS--LGSTRLLKHAIRCYLRLSDKPHA 272 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchhHHHHHHHHheeecCCHhH
Confidence 99999888888888888888887777654444321 122333333322 36667777788887777777766
Q ss_pred hHHhh
Q 048757 608 SIAIG 612 (864)
Q Consensus 608 ~~~i~ 612 (864)
|..+.
T Consensus 273 R~lL~ 277 (315)
T COG5209 273 RALLS 277 (315)
T ss_pred HHHHh
Confidence 65443
No 281
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.72 E-value=76 Score=35.08 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=67.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCc---
Q 048757 314 LLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSVDS--- 389 (864)
Q Consensus 314 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~--- 389 (864)
+.+-..+++..+|..|+..|++.+.+..+. +. --..-.+..++..|. ..+.+|+.++..+|..+....
T Consensus 263 la~ka~dp~a~~r~~a~r~L~~~as~~P~k-------v~-th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 263 LANKATDPSAKSRGMACRGLGNTASGAPDK-------VR-THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred HHHhccCchhHHHHHHHHHHHHHhccCcHH-------HH-HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 333345678899999999999998774321 11 112233455555554 467889999999888866532
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV 428 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 428 (864)
+....+. ...-.+..+..+.+++++..+...++.|+.
T Consensus 335 ~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 335 DLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred chhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 2221111 122245566788899999999888888865
No 282
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=83.63 E-value=11 Score=38.94 Aligned_cols=155 Identities=17% Similarity=0.081 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCc--HHHHHHHHc----cCCHHHHHHHHHHHHHhcCCCCcH
Q 048757 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGG--IDILADLAR----STNRLVAEEVVGGLWNLSVGEDHK 433 (864)
Q Consensus 360 i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~--i~~Lv~lL~----~~~~~v~~~a~~aL~~Ls~~~~~~ 433 (864)
...+...+.+.+.+.+.-++..++-+..++.....+...+. ...+..++. +..+..+..+++++.|+-.++..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 45566677777777788899999888888877666655542 444555443 346778899999999999888888
Q ss_pred HHHHhhCcHHHHHHHHcccCCC----CHHHHHHHHHHHHHhcCCCc-chH-HHHhcCcHHHHHHH-HHccCchhHHHHHH
Q 048757 434 GAIARAGGIKALVDLIFKWSSW----NDGVLERAAGALANLAADDK-CSL-EVARAGGVHALVML-ARSFMFEGVQEQAA 506 (864)
Q Consensus 434 ~~i~~~g~i~~L~~lL~~~~~~----~~~v~~~a~~~L~~L~~~~~-~~~-~i~~~~~i~~Lv~l-l~~~~~~~v~~~a~ 506 (864)
..+..... ..+.+.+...... +..++..++..+.|++..-. .+. .=.....+..+++. .....+++....++
T Consensus 145 ~~~~~~~~-~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L 223 (268)
T PF08324_consen 145 QLLLSHFD-SSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL 223 (268)
T ss_dssp HHHHCTHH-TCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred HHHHhccc-chHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence 88876533 2333443332233 67889999999999974211 110 00011123444442 22335688999999
Q ss_pred HHHHHHhhc
Q 048757 507 RALANLVAH 515 (864)
Q Consensus 507 ~aL~~L~~~ 515 (864)
-|+++|...
T Consensus 224 vAlGtL~~~ 232 (268)
T PF08324_consen 224 VALGTLLSS 232 (268)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhcc
Confidence 999999964
No 283
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.35 E-value=1.4 Score=27.57 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=12.5
Q ss_pred cCcCeeeecccCCCcHHHHHHHHh
Q 048757 108 PKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 108 ~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
++|++|+|+++. +++++...+++
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHH
Confidence 345555555555 55555555544
No 284
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=82.95 E-value=56 Score=33.00 Aligned_cols=132 Identities=17% Similarity=0.045 Sum_probs=76.9
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCc
Q 048757 407 LARSTNRLVAEEVVGGLWNLSVGE-DHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGG 485 (864)
Q Consensus 407 lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~ 485 (864)
+-+..+++.+...+.+|..++.++ .+... .+..+..+... +..+.+..+.+.+..+-..++-. .+.
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~---~~~~~~~~~~rLl~~lw~~~~r~-----f~~ 75 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQ---GSLELRYVALRLLTLLWKANDRH-----FPF 75 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcC---CchhHHHHHHHHHHHHHHhCchH-----HHH
Confidence 446678999999999999998876 43333 23444455542 33344334455554443332200 022
Q ss_pred HHHHHHHH--H-------ccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHh-cCCCHHHHHHHHHHHH
Q 048757 486 VHALVMLA--R-------SFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT-FSKHEGVRQEAAGALW 555 (864)
Q Consensus 486 i~~Lv~ll--~-------~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~ 555 (864)
+..++... + .....+.....+.+++.+|.. .++ .....++.+...| ++.++.++..++.+|.
T Consensus 76 L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~---~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 76 LQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS---RPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred HHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh---Chh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 33333330 1 111234445556788888875 222 2235677888888 7778888999999999
Q ss_pred HhcC
Q 048757 556 NLSF 559 (864)
Q Consensus 556 ~Ls~ 559 (864)
.++.
T Consensus 148 ~Lc~ 151 (234)
T PF12530_consen 148 PLCE 151 (234)
T ss_pred HHHH
Confidence 9873
No 285
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=82.89 E-value=1.8 Score=47.92 Aligned_cols=44 Identities=23% Similarity=0.191 Sum_probs=22.8
Q ss_pred HHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeeccc
Q 048757 73 SAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGV 118 (864)
Q Consensus 73 ~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~ 118 (864)
..+....|.+.+++| +...--.-+++..++...|+|+.|+|+++
T Consensus 211 ~~~~~n~p~i~sl~l--snNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 211 KHIEENFPEILSLSL--SNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred HHhhcCCcceeeeec--ccchhhchhhhhHHHHhcchhheeecccc
Confidence 333444555556555 33332233445555555666666666665
No 286
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=82.48 E-value=82 Score=34.58 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=85.2
Q ss_pred cHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc
Q 048757 441 GIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNS 520 (864)
Q Consensus 441 ~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~ 520 (864)
.+..+++.|.+ +.++..+..|.++|..++.+...+-.=...-+|..+++.-.+..+.-++.++-.++.-++++ .+
T Consensus 330 iL~~l~EvL~d--~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~---~P 404 (516)
T KOG2956|consen 330 ILLLLLEVLSD--SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH---LP 404 (516)
T ss_pred HHHHHHHHHcc--chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh---Cc
Confidence 45566777764 46677889999999999987654322122234666666667654334444444556666665 22
Q ss_pred ccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChh--hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048757 521 NNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVALVRSCSSSSQGLQERAAGAL 598 (864)
Q Consensus 521 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL 598 (864)
.. -|..+..++.+.|...-..++..+..+...-. .--.++ ....|.+++.-.+ .+..||..|+.+|
T Consensus 405 ~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S---~SS~VRKtaVfCL 472 (516)
T KOG2956|consen 405 LQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDS---TSSTVRKTAVFCL 472 (516)
T ss_pred hh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcC---chHHhhhhHHHhH
Confidence 22 23334444445555555555656665544311 111111 2467777777775 8899999999999
Q ss_pred HH
Q 048757 599 WG 600 (864)
Q Consensus 599 ~~ 600 (864)
-.
T Consensus 473 Va 474 (516)
T KOG2956|consen 473 VA 474 (516)
T ss_pred HH
Confidence 84
No 287
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=82.09 E-value=16 Score=41.99 Aligned_cols=136 Identities=11% Similarity=-0.008 Sum_probs=94.8
Q ss_pred hccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch
Q 048757 527 LETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA 606 (864)
Q Consensus 527 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~ 606 (864)
+...++|.|...+++.+..+++.++..+..++..-+. ..+....+|.+-.+-.. +.+..++..++.+++.+...
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--~~vk~~ilP~l~~l~~~--tt~~~vkvn~L~c~~~l~q~-- 459 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV--PFVKQAILPRLKNLAFK--TTNLYVKVNVLPCLAGLIQR-- 459 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--HHHHHHHHHHhhcchhc--ccchHHHHHHHHHHHHHHHH--
Confidence 3456778888889999999999999999988765432 22333456666665332 47889999999999988721
Q ss_pred hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCC
Q 048757 607 NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSL 669 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~ 669 (864)
.....--.-+.++.+..+..++.+......+..++.........+.-+.++|.++-+...+.
T Consensus 460 -lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 -LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred -HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 11111122355666667788999999999999998876655444555678888888876653
No 288
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.77 E-value=62 Score=32.69 Aligned_cols=190 Identities=18% Similarity=0.045 Sum_probs=107.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCC-cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChH
Q 048757 454 SWNDGVLERAAGALANLAADD-KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGAL 532 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i 532 (864)
..+++++.....+|..++..+ .+...+ +..|..+...+ ..+.+..+.+.+..+-...+ +.. +.+
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~-----r~f----~~L 76 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQG-SLELRYVALRLLTLLWKAND-----RHF----PFL 76 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCC-chhHHHHHHHHHHHHHHhCc-----hHH----HHH
Confidence 567788889999999998877 433333 44556666553 34555566677777765321 110 334
Q ss_pred HHHHHH--hc------C--CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHH-HhcCCCCHHHHHHHHHHHHHh
Q 048757 533 EALVQL--TF------S--KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALV-RSCSSSSQGLQERAAGALWGL 601 (864)
Q Consensus 533 ~~L~~l--L~------~--~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL-~~~~~~~~~v~~~A~~aL~~L 601 (864)
+.++.. ++ + ...+.....+..+..++...+++ ....++.+..++ ++ .++.++..++.+|..+
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~---~~~~~~alale~l~~L 149 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQS---CDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHH
Confidence 444433 11 1 12334455556677776654331 123477777888 54 7888999999999988
Q ss_pred ccCchhhHHhhh-cCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCC--cccHHHHHhCCcHHHHHHHhcCCCc
Q 048757 602 SLSEANSIAIGR-EGGVAPLIALAR-SAVVDVHETAAGALWNLAFN--PGNALCIVEGGGVQALIHLCSSSLS 670 (864)
Q Consensus 602 ~~~~~~~~~i~~-~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~ll~~~~~ 670 (864)
+..+ +.+ ...+..+.+-+. +..+.+...-+..+..+... ...+-......++..+++...+.+.
T Consensus 150 c~~~-----vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 150 CEAE-----VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred HHHh-----hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 8332 222 233444554443 23355555444444443331 1223344556778888888877653
No 289
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=81.39 E-value=0.13 Score=57.36 Aligned_cols=103 Identities=17% Similarity=0.262 Sum_probs=50.8
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHh
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
.+.+|+.|++.+.. + ..+..+...+++|++|++ ++. .|++ +..+. .++.|+.|+++++. +++- ..+ .
T Consensus 93 ~~~~l~~l~l~~n~-i--~~i~~~l~~~~~L~~L~l--s~N-~I~~--i~~l~-~l~~L~~L~l~~N~-i~~~--~~~-~ 159 (414)
T KOG0531|consen 93 KLKSLEALDLYDNK-I--EKIENLLSSLVNLQVLDL--SFN-KITK--LEGLS-TLTLLKELNLSGNL-ISDI--SGL-E 159 (414)
T ss_pred cccceeeeeccccc-h--hhcccchhhhhcchheec--ccc-cccc--ccchh-hccchhhheeccCc-chhc--cCC-c
Confidence 45666666665543 2 112221234667777777 432 3332 22222 24446677776665 3321 111 1
Q ss_pred cCCCccEEeccCCCCCCHHH--hcCCCCcCEEEEeCCC
Q 048757 132 QCRQLVEVGFIDSGGVDEAA--LENLSSVRYLSIAGTR 167 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~~~--~~~~~~L~~L~l~~c~ 167 (864)
.++.|+.++++++....-.. ...+.+|+.+++.+..
T Consensus 160 ~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 25666666666654333333 2566666666666544
No 290
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=80.37 E-value=6.2 Score=38.26 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=58.9
Q ss_pred hhHHHHHhhcHHHHHHHHcc---------CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCC
Q 048757 301 EFDDFWLRQGATLLLSLMES---------SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPP 371 (864)
Q Consensus 301 ~~~~~~~~~gv~~L~~lL~~---------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~ 371 (864)
=...|+..+|+..|++.|.. .+.+.+..+..++..+.... .+....+...+++..+...|.+++
T Consensus 99 Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-------~G~~~v~~~~~~v~~i~~~L~s~~ 171 (187)
T PF06371_consen 99 WVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-------YGLEAVLSHPDSVNLIALSLDSPN 171 (187)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-------HHHHHHHCSSSHHHHHHHT--TTS
T ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-------HHHHHHHcCcHHHHHHHHHHCCCC
Confidence 35677788999999998843 34578888999998887433 223344556788999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 048757 372 EGLQSEVAKAIANLS 386 (864)
Q Consensus 372 ~~~~~~a~~~L~~L~ 386 (864)
..++..++..|..++
T Consensus 172 ~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 172 IKTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998876
No 291
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=80.16 E-value=3.1 Score=41.10 Aligned_cols=84 Identities=25% Similarity=0.177 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHCC-------ChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc-hhh-HHhhhcCC
Q 048757 546 VRQEAAGALWNLSFDDRNREAIAAAG-------GVEALVALVRSCSSSSQGLQERAAGALWGLSLSE-ANS-IAIGREGG 616 (864)
Q Consensus 546 v~~~a~~~L~~Ls~~~~~~~~i~~~~-------~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~-~~~-~~i~~~~~ 616 (864)
-|..|.++|..|+..+.|-..+...+ .+..|++++.. ++++..|+.|+..|.+|+..+ ... ..-.+.+.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--REDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 58899999999998887766655543 35556666665 688999999999999999873 333 33346889
Q ss_pred HHHHHHHHccCCHHH
Q 048757 617 VAPLIALARSAVVDV 631 (864)
Q Consensus 617 i~~Lv~lL~~~~~~v 631 (864)
+..|+.++.+.....
T Consensus 218 i~~Li~FiE~a~~~~ 232 (257)
T PF12031_consen 218 ISHLIAFIEDAEQNA 232 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999997655443
No 292
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=80.05 E-value=5.2 Score=46.48 Aligned_cols=165 Identities=18% Similarity=0.178 Sum_probs=102.2
Q ss_pred HHHHHhcCcHHHHHHHHccC--------CHHHHHHHHHHHHHhcCCCCcHHHHHhh--------CcHHHHHHHHc-ccCC
Q 048757 392 AKAVSENGGIDILADLARST--------NRLVAEEVVGGLWNLSVGEDHKGAIARA--------GGIKALVDLIF-KWSS 454 (864)
Q Consensus 392 ~~~i~~~g~i~~Lv~lL~~~--------~~~v~~~a~~aL~~Ls~~~~~~~~i~~~--------g~i~~L~~lL~-~~~~ 454 (864)
..-+.+.+++..++++...+ -.++...|+.+|.-+..-|..|..++.. .||..+++.-. .+.-
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 34466677777777776432 2456777888887777788888887643 24444444332 1222
Q ss_pred CCHHHHHHHHHHHHHhcCCC-cchHHHH----hcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhcc
Q 048757 455 WNDGVLERAAGALANLAADD-KCSLEVA----RAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLET 529 (864)
Q Consensus 455 ~~~~v~~~a~~~L~~L~~~~-~~~~~i~----~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~ 529 (864)
-+++++..|+.+|.|+...+ +++...+ ...+-+. ..+...+.....++...-+++ .+...
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r--~~l~~~~ks~~le~~l~~mw~-------------~Vr~n 738 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR--IFLGAGTKSAKLEQVLRQMWE-------------AVRGN 738 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc--ccccCCCchHHHHHHHHHHHH-------------HHhcC
Confidence 37899999999999998876 4554332 1111000 011111111222333333333 34456
Q ss_pred ChHHHHHHHhcCCC-----HHHHHHHHHHHHHhcCChhhHHHHHHCC
Q 048757 530 GALEALVQLTFSKH-----EGVRQEAAGALWNLSFDDRNREAIAAAG 571 (864)
Q Consensus 530 ~~i~~L~~lL~~~~-----~~v~~~a~~~L~~Ls~~~~~~~~i~~~~ 571 (864)
.+|..|+++|+... ..+|..|+.+|..|+.++..|+.+....
T Consensus 739 dGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLp 785 (1516)
T KOG1832|consen 739 DGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLP 785 (1516)
T ss_pred ccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCc
Confidence 78999999998643 3589999999999999999998877643
No 293
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.61 E-value=86 Score=40.63 Aligned_cols=256 Identities=17% Similarity=0.068 Sum_probs=129.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchh-hHH
Q 048757 532 LEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEAN-SIA 610 (864)
Q Consensus 532 i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~-~~~ 610 (864)
...++..+...++..+-.+..+++.++...+....+. ...+..++=+.+ ..++..|..-.-+++.+=+.... -..
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a--~~aq~~fdklas--~~d~i~R~ghslalg~lhkyvgs~~s~ 953 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVA--SLAQNSFDKLAS--ARDPITRTGHSLALGCLHKYVGSIGSG 953 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHH--HHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence 3445566777888888888888888866533222111 123444444554 35565555444444443222100 000
Q ss_pred hhhcCCHHHHHHHHccCC-HHHHHHHHHHHHHhcCC-cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 611 IGREGGVAPLIALARSAV-VDVHETAAGALWNLAFN-PGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 611 i~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
=....++..|..+-+++. |.|+..+..++.-+... .+.....++ --+.....++.+.. .....--.+...+..++
T Consensus 954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p--~~~~ev~q~~~R~~~~~ 1030 (2067)
T KOG1822|consen 954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVP--TSHVEVHQCYNRCFNGD 1030 (2067)
T ss_pred hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCC--cchhhhhhhhccccccc
Confidence 011234667777777655 59999999999888752 232222222 22333334444432 23333344555555555
Q ss_pred ccceeeecc--------cccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChhhHHHH-hhccchhHHhc
Q 048757 689 MEDIASIGS--------SLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQAFATA-LASAVPKSLAQ 759 (864)
Q Consensus 689 ~~~~~~~~~--------ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~~~~~a-~~~~a~~~l~~ 759 (864)
.+.-+.+.+ ..+|....++.... +-..++.+-+++.+..++ .|.+.+..|+.
T Consensus 1031 ~~~~alittlgpeL~~N~~~d~t~~~rts~l-------------------a~~allls~~d~lnqa~ai~clqqlhlFap 1091 (2067)
T KOG1822|consen 1031 DDEDALITTLGPELGPNGDKDSTSTLRTSCL-------------------AACALLLSHSDPLNQAAAIKCLQQLHLFAP 1091 (2067)
T ss_pred hhHHHHHHhcccccCCCCcccchhHHHHHHH-------------------HHHHHhcCCCccchHHHHHHHHHHHHhhcc
Confidence 443332222 22333333333332 111233444455444333 34444444443
Q ss_pred cccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCcchhhhhhhhhhcCh
Q 048757 760 ITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPGGQHSMHHTNLLQNVGA 824 (864)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~~~~~~~~~~~~~~~~~ 824 (864)
+...- +.-|+.|..++.++--.+|..+..++.|+.-.+...-...+..++.-++
T Consensus 1092 ----r~~n~-------~~lV~~L~~~l~s~~~i~r~~~~~clrql~~Re~sev~e~a~~L~~~~~ 1145 (2067)
T KOG1822|consen 1092 ----RHVNL-------DSLVLQLCSLLSSSYLILRRASFSCLRQLVQREASEVCEYAQLLAKTLA 1145 (2067)
T ss_pred ----hhccH-------HHHHHHHHHHhcchhhhhhhhHHhhhhHHhHHHHHHHHHHHHHhhhhhh
Confidence 22111 1256788888888888888888888888765544444445555554333
No 294
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.42 E-value=0.73 Score=48.61 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=60.5
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC---cCeeeecccC--CCcHHHH
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK---LRRLWLSGVR--EVNGDAI 126 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~---L~~L~l~~~~--~l~~~~l 126 (864)
++++|..|++++.. +.|-.... ...-.|+.|++ ++. .++.+.++|-. |+.+-.+... .+..+++
T Consensus 433 ~l~kLt~L~L~NN~-Ln~LP~e~--~~lv~Lq~Lnl--S~N------rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 433 QLQKLTFLDLSNNL-LNDLPEEM--GSLVRLQTLNL--SFN------RFRMLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred hhhcceeeecccch-hhhcchhh--hhhhhhheecc--ccc------ccccchHHHhhHHHHHHHHhccccccccChHHh
Confidence 78899999998864 54443332 23456899999 543 23333333333 3333333222 1333333
Q ss_pred HHHHhcCCCccEEeccCCCCC-CHHHhcCCCCcCEEEEeCCC
Q 048757 127 NALAKQCRQLVEVGFIDSGGV-DEAALENLSSVRYLSIAGTR 167 (864)
Q Consensus 127 ~~l~~~~~~L~~L~l~~c~~i-~~~~~~~~~~L~~L~l~~c~ 167 (864)
.++.+|..||+.+..-. -...+++|.+|++|+++|.+
T Consensus 502 ----~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 502 ----KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ----hhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence 34778999999875422 23455699999999999865
No 295
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=79.29 E-value=38 Score=40.62 Aligned_cols=178 Identities=14% Similarity=0.058 Sum_probs=110.7
Q ss_pred HccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHH
Q 048757 408 ARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVH 487 (864)
Q Consensus 408 L~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~ 487 (864)
+.+.+-.-+..|+..++.....+.........|.+..++..... +.+..+...++.+|..++..-.....=...+..+
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~k--DaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p 339 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLK--DANINVVMLAAQILELIAKKLRPLFRKYAKNVFP 339 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhcc--CcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcc
Confidence 34556666667777777665443311111223344555555543 5677888888999988886543222223345678
Q ss_pred HHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-h-hhHH
Q 048757 488 ALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-D-RNRE 565 (864)
Q Consensus 488 ~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~-~~~~ 565 (864)
.++.-+... ...++..+..++-..+.. + .-....+.+..++++.++.++......+...... + ....
T Consensus 340 ~lld~lkek-k~~l~d~l~~~~d~~~ns---~-------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 340 SLLDRLKEK-KSELRDALLKALDAILNS---T-------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hHHHHhhhc-cHHHHHHHHHHHHHHHhc---c-------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 888888773 477777777777666642 1 1234567888999999999998877666544332 2 1111
Q ss_pred HHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Q 048757 566 AIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGL 601 (864)
Q Consensus 566 ~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L 601 (864)
.-.-.+.++.++....+ .+.+||.+|..+++.+
T Consensus 409 ~~t~~~l~p~~~~~~~D---~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHIND---TDKDVRKAALEAVAAV 441 (815)
T ss_pred hhhHHHHhHHHhhhccC---CcHHHHHHHHHHHHHH
Confidence 11112456777777766 7999999999999854
No 296
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=78.17 E-value=9.6 Score=35.10 Aligned_cols=73 Identities=8% Similarity=0.050 Sum_probs=61.7
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~ 387 (864)
..+..|.+-|++.++.++..|...|..+....... ....+...+.+..|+.++.. .++.|+..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 44678888899999999999999999998766533 45678889999999999987 789999999999998764
No 297
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=77.87 E-value=0.9 Score=47.92 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=24.9
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCH
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISS 97 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~ 97 (864)
.+++|+.|||++.. |+..+-..+ .++++|.+|-+ .+..+|++
T Consensus 89 ~l~~LRrLdLS~N~-Is~I~p~AF-~GL~~l~~Lvl--yg~NkI~~ 130 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNN-ISFIAPDAF-KGLASLLSLVL--YGNNKITD 130 (498)
T ss_pred chhhhceecccccc-hhhcChHhh-hhhHhhhHHHh--hcCCchhh
Confidence 67788888888754 443333222 34566666666 44456665
No 298
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=77.72 E-value=17 Score=40.63 Aligned_cols=104 Identities=18% Similarity=0.034 Sum_probs=71.5
Q ss_pred CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHH
Q 048757 571 GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNAL 650 (864)
Q Consensus 571 ~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 650 (864)
|.+..+++.+.+ .+..||...+.+|+.++..-.--....-.+.+..|.+-+-+..+.||..|+.+|+.+-....+-+
T Consensus 91 ~~~~h~lRg~es---kdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 91 GTFYHLLRGTES---KDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHhcccC---cchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence 355666666665 89999999999999877542211223345566677777777889999999999999865433331
Q ss_pred HHHhCCcHHHHHHHhcCCCcHHHHHHHHHHH
Q 048757 651 CIVEGGGVQALIHLCSSSLSKMARFMAALAL 681 (864)
Q Consensus 651 ~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL 681 (864)
...+..|+.+++++.+..+|..|..-+
T Consensus 168 ----n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 168 ----NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred ----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 123447888888777788888665443
No 299
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=77.62 E-value=6.4 Score=38.93 Aligned_cols=81 Identities=21% Similarity=0.132 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHhhCcH-------HHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc--chHHHHhcC
Q 048757 414 LVAEEVVGGLWNLSVGEDHKGAIARAGGI-------KALVDLIFKWSSWNDGVLERAAGALANLAADDK--CSLEVARAG 484 (864)
Q Consensus 414 ~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i-------~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~--~~~~i~~~~ 484 (864)
.-|+.|+++|.+|+..+.|...+...+.. ..|++++.. .++...|+.|.-.|.+++..++ ++..-.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--REDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 47899999999999988888887655543 345555543 5677899999999999999877 344445778
Q ss_pred cHHHHHHHHHcc
Q 048757 485 GVHALVMLARSF 496 (864)
Q Consensus 485 ~i~~Lv~ll~~~ 496 (864)
.|..|+.++.+.
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 899999999874
No 300
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=76.45 E-value=97 Score=31.88 Aligned_cols=212 Identities=16% Similarity=0.058 Sum_probs=115.0
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhCCchh
Q 048757 314 LLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIANLSVDSKV 391 (864)
Q Consensus 314 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~L~~~~~~ 391 (864)
|=..|.++|+.+|..|...|......-+. ......-+..|++...+ .|......++.++..|......
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~----------~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPP----------DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCH----------hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCC
Confidence 44567888999999998888876533321 11223345556655433 4555555557777766643321
Q ss_pred HHHHHhcCcHHHHHH-HHc-----cCCHHHHHHHHHHHHHhcCCCCcHHHHH--hhCcHHHHHHHHcccCCCCHHHHHHH
Q 048757 392 AKAVSENGGIDILAD-LAR-----STNRLVAEEVVGGLWNLSVGEDHKGAIA--RAGGIKALVDLIFKWSSWNDGVLERA 463 (864)
Q Consensus 392 ~~~i~~~g~i~~Lv~-lL~-----~~~~~v~~~a~~aL~~Ls~~~~~~~~i~--~~g~i~~L~~lL~~~~~~~~~v~~~a 463 (864)
. .+....+++ +.+ +.....|..+...|..+..+ ....+. ..+.+..+++.+.. ..++.-...+
T Consensus 74 ~-----~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~g--EkDPRnLl~~ 144 (262)
T PF14500_consen 74 S-----PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDG--EKDPRNLLLS 144 (262)
T ss_pred C-----hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhcc--CCCHHHHHHH
Confidence 1 111222222 222 22345677777777777543 222232 23456677777764 5666666666
Q ss_pred HHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc--------C-ch--hHHHHHHHHHHHHhhcCCCCcccchhhhccChH
Q 048757 464 AGALANLAADDKCSLEVARAGGVHALVMLARSF--------M-FE--GVQEQAARALANLVAHGDSNSNNAAVGLETGAL 532 (864)
Q Consensus 464 ~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~--------~-~~--~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i 532 (864)
...+..+...-+. ....+.+.+.+... . ++ -.++.-..+|.+.-.. ++. ...-++
T Consensus 145 F~l~~~i~~~~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s---~~~-----fa~~~~ 210 (262)
T PF14500_consen 145 FKLLKVILQEFDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSS---TPL-----FAPFAF 210 (262)
T ss_pred HHHHHHHHHhccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcC---cHh-----hHHHHH
Confidence 6666655443221 22344444444321 1 11 1223333344433321 111 234678
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhc
Q 048757 533 EALVQLTFSKHEGVRQEAAGALWNLS 558 (864)
Q Consensus 533 ~~L~~lL~~~~~~v~~~a~~~L~~Ls 558 (864)
|.|++-|.+..+.++..++.+|....
T Consensus 211 p~LleKL~s~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 211 PLLLEKLDSTSPSVKLDSLQTLKACI 236 (262)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999988763
No 301
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=76.42 E-value=9.1 Score=39.72 Aligned_cols=158 Identities=18% Similarity=0.085 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCC--ChHHHHHHHHhcC-CCCHHHHHHHHHHHHHhccCchhh
Q 048757 532 LEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAG--GVEALVALVRSCS-SSSQGLQERAAGALWGLSLSEANS 608 (864)
Q Consensus 532 i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~--~i~~Lv~lL~~~~-~~~~~v~~~A~~aL~~L~~~~~~~ 608 (864)
...+...+.....+-+-.+...++-+..++..-..+...+ ....+..++.... ...+..+.-++++++|+-.++..+
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~ 144 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR 144 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence 3455566666666667888888888888877655554443 2455666665421 257888999999999999998888
Q ss_pred HHhhhcC--CHHHHHHHHccC----CHHHHHHHHHHHHHhcCC--cccHHHHHhCCcHHHHHH-HhcCCCcHHHHHHHHH
Q 048757 609 IAIGREG--GVAPLIALARSA----VVDVHETAAGALWNLAFN--PGNALCIVEGGGVQALIH-LCSSSLSKMARFMAAL 679 (864)
Q Consensus 609 ~~i~~~~--~i~~Lv~lL~~~----~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~-ll~~~~~~~~r~~aa~ 679 (864)
..+.+.. .+...+..+... +..++..++..+.|++.. ......=.....+..+.+ +.....++++...+..
T Consensus 145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv 224 (268)
T PF08324_consen 145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV 224 (268)
T ss_dssp HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 8877643 344444444443 688999999999999751 111000001112445555 3333345888889999
Q ss_pred HHHHhhcCCc
Q 048757 680 ALAYIVDGRM 689 (864)
Q Consensus 680 aL~~l~~~~~ 689 (864)
|+|++.....
T Consensus 225 AlGtL~~~~~ 234 (268)
T PF08324_consen 225 ALGTLLSSSD 234 (268)
T ss_dssp HHHHHHCCSH
T ss_pred HHHHHhccCh
Confidence 9999986554
No 302
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=76.07 E-value=84 Score=34.51 Aligned_cols=143 Identities=15% Similarity=0.063 Sum_probs=86.3
Q ss_pred hHHHHHHHhcC-CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHH-HHHHhccCchhh
Q 048757 531 ALEALVQLTFS-KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAG-ALWGLSLSEANS 608 (864)
Q Consensus 531 ~i~~L~~lL~~-~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~-aL~~L~~~~~~~ 608 (864)
.+..+++.|.+ .++..+..|.+.|..+..+...+-.=-..-++..+++.-.+ ..+++...|.. ++..++...+.+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~d---s~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKD---SQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhC---CchhHHHHHHHHHHHHHHhhCchh
Confidence 34556777776 67889999999999998775443221122245555555554 45555444444 444444432221
Q ss_pred HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCc--ccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 609 IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNP--GNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 609 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~--~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
.+..+..++...++..-..++..+..+...- +.-..++ ....|.+++-..+.. ..||..|+.+|..|.
T Consensus 407 -------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~diaP~~iqay~S~S-S~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 -------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL-PDIAPCVIQAYDSTS-STVRKTAVFCLVAMV 476 (516)
T ss_pred -------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhhhHHHHHhcCch-HHhhhhHHHhHHHHH
Confidence 2344555555566666666777777777532 2222222 367788888887774 679998988886553
No 303
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=75.84 E-value=1.2 Score=40.07 Aligned_cols=116 Identities=18% Similarity=0.318 Sum_probs=37.5
Q ss_pred hcCCCCcEEEecCC-CCchHHHHhCCcccceeeeecC-CCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhc
Q 048757 29 SRCTNLQALWFRGA-LSADAMIILQARRLREINVEFC-RELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYC 106 (864)
Q Consensus 29 ~~~~~L~~L~l~~~-~~~~~l~~~~~~~L~~L~l~~c-~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~ 106 (864)
..|++|+.+.+... ..+..-....|++|+++.+..- ..+.+. ....|++|+.+.+. .....+.+. ....
T Consensus 9 ~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~----~F~~~~~l~~i~~~-~~~~~i~~~----~F~~ 79 (129)
T PF13306_consen 9 YNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGDN----AFSNCKSLESITFP-NNLKSIGDN----AFSN 79 (129)
T ss_dssp TT-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-TT----TTTT-TT-EEEEET-STT-EE-TT----TTTT
T ss_pred hCCCCCCEEEECCCeeEeChhhccccccccccccccccccccee----eeeccccccccccc-ccccccccc----cccc
Confidence 34666777776632 2222211225666666666541 111111 12345566666661 111122211 2234
Q ss_pred CcCcCeeeeccc-CCCcHHHHHHHHhcCCCccEEeccC-CCCCCHHHhcCCCCc
Q 048757 107 CPKLRRLWLSGV-REVNGDAINALAKQCRQLVEVGFID-SGGVDEAALENLSSV 158 (864)
Q Consensus 107 ~~~L~~L~l~~~-~~l~~~~l~~l~~~~~~L~~L~l~~-c~~i~~~~~~~~~~L 158 (864)
|++|+.+.+... ..+... ...+| +|+.+.+.. ...+.+..+.+|++|
T Consensus 80 ~~~l~~i~~~~~~~~i~~~----~f~~~-~l~~i~~~~~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 80 CTNLKNIDIPSNITEIGSS----SFSNC-NLKEINIPSNITKIEENAFKNCTKL 128 (129)
T ss_dssp -TTECEEEETTT-BEEHTT----TTTT--T--EEE-TTB-SS----GGG-----
T ss_pred cccccccccCccccEEchh----hhcCC-CceEEEECCCccEECCccccccccC
Confidence 666666666432 111111 12334 566666643 234444444455544
No 304
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=75.68 E-value=86 Score=35.97 Aligned_cols=164 Identities=18% Similarity=0.098 Sum_probs=99.1
Q ss_pred chhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHH
Q 048757 498 FEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV 577 (864)
Q Consensus 498 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv 577 (864)
+++.+.-|+-+|+.+..+...+......-.....+..++..+. .++.-+..++++|.|+-.++.+++.+... .+.+.
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i~ 633 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR--LESIL 633 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHHh
Confidence 4677788888888888765433333332223345566666665 55677888999999998887777665543 33333
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHhccC--chhhHHhhhcCCHHHHHHHHcc---CCH--HHHHHHHHHHHHhcCCcccH
Q 048757 578 ALVRSCSS-SSQGLQERAAGALWGLSLS--EANSIAIGREGGVAPLIALARS---AVV--DVHETAAGALWNLAFNPGNA 649 (864)
Q Consensus 578 ~lL~~~~~-~~~~v~~~A~~aL~~L~~~--~~~~~~i~~~~~i~~Lv~lL~~---~~~--~v~~~a~~aL~~L~~~~~~~ 649 (864)
..+..+.+ .+..++.+-+....|++.. ..+- +.++.+.+..++.. +.+ +.......||++|+..+...
T Consensus 634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 33322222 3455555444444445431 1111 14555555555432 222 23445778889999888888
Q ss_pred HHHHhCCcHHHHHHHhcCC
Q 048757 650 LCIVEGGGVQALIHLCSSS 668 (864)
Q Consensus 650 ~~i~~~g~v~~L~~ll~~~ 668 (864)
.++.+.-.+..++.-+++.
T Consensus 710 ~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 710 IQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHhcCHHHHHHHHHHh
Confidence 8888888888888877654
No 305
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.65 E-value=24 Score=32.28 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=59.6
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC------CCHHHHHHHHHHH
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS------PPEGLQSEVAKAI 382 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L 382 (864)
.++..+.+-|++.++.++..|...|..+....... ....+...+.+..|++++.. .+..|+...+..+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~------fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li 111 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGER------FHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELL 111 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHH------HHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 45788889999999999999999999988666432 45678889999999999953 5688999999988
Q ss_pred HHHhC
Q 048757 383 ANLSV 387 (864)
Q Consensus 383 ~~L~~ 387 (864)
...+.
T Consensus 112 ~~W~~ 116 (139)
T cd03567 112 YSWTL 116 (139)
T ss_pred HHHHH
Confidence 87654
No 306
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=75.36 E-value=1.5e+02 Score=33.54 Aligned_cols=254 Identities=12% Similarity=0.007 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHH
Q 048757 370 PPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLAR-STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDL 448 (864)
Q Consensus 370 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~l 448 (864)
...+.|..+...|..+...+..+.... =..+.+.+. ...++.-..-+.+|..|+.+...- ...+.+..+.|...
T Consensus 41 ~p~e~R~~~~~ll~~~i~~~~~~~~~~----R~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~w 115 (464)
T PF11864_consen 41 QPSEARRAALELLIACIKRQDSSSGLM----RAEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSW 115 (464)
T ss_pred CCHHHHHHHHHHHHHHHHccccccHHH----HHHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHH
Confidence 356788888888888776443211000 011233332 334444445566777777644332 22566677777777
Q ss_pred HcccC------------------------CCCHHHHHHHHHHHHHhcCCCcc-hHHHHhcCcHHHHHHHHHccCchhHHH
Q 048757 449 IFKWS------------------------SWNDGVLERAAGALANLAADDKC-SLEVARAGGVHALVMLARSFMFEGVQE 503 (864)
Q Consensus 449 L~~~~------------------------~~~~~v~~~a~~~L~~L~~~~~~-~~~i~~~~~i~~Lv~ll~~~~~~~v~~ 503 (864)
+.... +.+..........+.|+..-+.. -..-.-.+.+..++.+....+.++.-+
T Consensus 116 l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~ 195 (464)
T PF11864_consen 116 LEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIE 195 (464)
T ss_pred HHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 74210 00111222233333333332221 000011123444444444433344445
Q ss_pred HHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC--CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHH
Q 048757 504 QAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS--KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVR 581 (864)
Q Consensus 504 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~ 581 (864)
.++..+-.+..++.-+ .+.++.++..|-+ ...+....+..++.||..+.... .++..|.++|.
T Consensus 196 ~~L~vldaii~y~~iP---------~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~------~~i~~L~~iL~ 260 (464)
T PF11864_consen 196 ACLSVLDAIITYGDIP---------SESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH------SAIRTLCDILR 260 (464)
T ss_pred HHHHHHHHHHHcCcCC---------hHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH------HHHHHHHHHHc
Confidence 5555555554443211 1233334433322 12256677788888887654332 25677888883
Q ss_pred hcC---CCCHHHHHHHHHHHHHhccCc--hhhHHhhhcC--CHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 582 SCS---SSSQGLQERAAGALWGLSLSE--ANSIAIGREG--GVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 582 ~~~---~~~~~v~~~A~~aL~~L~~~~--~~~~~i~~~~--~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
+.. ..+..+..-|+..+..+.... +....+--.- .++.+...++.+++.|-..+...+.++.
T Consensus 261 ~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 261 SPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred ccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 211 134566667777777665442 2222222222 6677777788777776666777776666
No 307
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=74.98 E-value=35 Score=32.32 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=65.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhC--CHHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHG--GVRLLLDLARS-PPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~--~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~ 387 (864)
+..+.++|++.+++.|..++..+.-.+..++ .+.+.+.+ .+..++..|+. +++.+...++.+|..+..
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~---------~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS---------WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 4678889999999999888888777663321 23333333 36778888876 456678888888888755
Q ss_pred ----CchhHHHHHhcCc---HHHHHHHHccCCHHHHHHHHHHHHHh
Q 048757 388 ----DSKVAKAVSENGG---IDILADLARSTNRLVAEEVVGGLWNL 426 (864)
Q Consensus 388 ----~~~~~~~i~~~g~---i~~Lv~lL~~~~~~v~~~a~~aL~~L 426 (864)
.|+..+++..... ++.+++++++ ....+.++.+|..+
T Consensus 98 ~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 98 LIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred HhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 3555555543321 3344444443 44555666666655
No 308
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.90 E-value=13 Score=34.07 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=60.4
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~ 387 (864)
.++..|.+-|++.++.++..|...|..+....... ....+.+.+.+..|+.++. ..++.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~------fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTH------FHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHH------HHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 45788889999999999999999999988765432 3467888999999999987 4778899999999988664
No 309
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.64 E-value=29 Score=32.62 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=77.2
Q ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHH
Q 048757 401 IDILADLARST-NRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLE 479 (864)
Q Consensus 401 i~~Lv~lL~~~-~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~ 479 (864)
++.|+++|+++ +..++..+.++|+.|..-+..+-+....+. + ..-.. ..+...... .+.+.. .....++
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~---~~~~~--~~~~~~~~~---~l~~~~-~~~~~ee 81 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-D---SKSSE--NSNDESTDI---SLPMMG-ISPSSEE 81 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-C---ccccc--cccccchhh---HHhhcc-CCCchHH
Confidence 45677777654 688999999999999764443333221110 0 00000 001111110 111111 1112334
Q ss_pred HHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 048757 480 VARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNL 557 (864)
Q Consensus 480 i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~L 557 (864)
..-.-++..|++.+++.+-..-...++.++.++... ...+..-.=..++|.+++.+++.+...++....-|..|
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~----l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKS----LGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh----cCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444556788889998866555566778888777752 11222222235778888888876667777666555554
No 310
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.14 E-value=15 Score=35.81 Aligned_cols=141 Identities=14% Similarity=0.055 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC-----CHHHHHHHHHHHHHhcCChh--hHHHHHHCCChH
Q 048757 502 QEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK-----HEGVRQEAAGALWNLSFDDR--NREAIAAAGGVE 574 (864)
Q Consensus 502 ~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~-----~~~v~~~a~~~L~~Ls~~~~--~~~~i~~~~~i~ 574 (864)
-..|+..|..+++ .++.+..+.+..+--.+..+|... .+-+|..+.+.|+.|..+++ ....+.....+|
T Consensus 117 vcnaL~lLQclaS----hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP 192 (315)
T COG5209 117 VCNALNLLQCLAS----HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP 192 (315)
T ss_pred HHHHHHHHHHHhc----CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence 3467777888888 456777777777655566665432 34588899999999988754 355666778999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhccCchh----hHHhhhcCCH----HHHHH-HHccCCHHHHHHHHHHHHHhcCC
Q 048757 575 ALVALVRSCSSSSQGLQERAAGALWGLSLSEAN----SIAIGREGGV----APLIA-LARSAVVDVHETAAGALWNLAFN 645 (864)
Q Consensus 575 ~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~----~~~i~~~~~i----~~Lv~-lL~~~~~~v~~~a~~aL~~L~~~ 645 (864)
..++++.. +++--+.-|+.++..+-.++.. ++.+-+--++ ..++. +...+.......+..+-.+|+.+
T Consensus 193 LcLrIme~---gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 193 LCLRIMEL---GSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHh---hhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 99999997 7887888888888876554332 2222221122 11221 12234445555566665566555
Q ss_pred cccH
Q 048757 646 PGNA 649 (864)
Q Consensus 646 ~~~~ 649 (864)
+..|
T Consensus 270 p~aR 273 (315)
T COG5209 270 PHAR 273 (315)
T ss_pred HhHH
Confidence 5444
No 311
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=73.95 E-value=96 Score=37.38 Aligned_cols=174 Identities=16% Similarity=0.010 Sum_probs=107.7
Q ss_pred chhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHH-hcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHH
Q 048757 498 FEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL-TFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEAL 576 (864)
Q Consensus 498 ~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~L 576 (864)
...-+..|+..+...... ......-...+.+..++.. +.+.+..+...|+..|..|+..-..-..-...+..+.+
T Consensus 266 ~WK~R~Eale~l~~~l~e----~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~l 341 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEE----AKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSL 341 (815)
T ss_pred chHHHHHHHHHHHHHHhc----cccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchH
Confidence 355577777777777653 1111111223444444444 45667788888888888887642111111223467888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--CcccHHHHHh
Q 048757 577 VALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF--NPGNALCIVE 654 (864)
Q Consensus 577 v~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~ 654 (864)
++-+.+ .-..++..+..++-.++.. .......+.++..++++++.++......+..... .+..-..-.-
T Consensus 342 ld~lke---kk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~ 412 (815)
T KOG1820|consen 342 LDRLKE---KKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV 412 (815)
T ss_pred HHHhhh---ccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence 888886 6777777777777643331 1123345678888999999999987777777765 2222222223
Q ss_pred CCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 655 GGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 655 ~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
.+.+|.++....+.+ +.||..|..+++.+.
T Consensus 413 ~~l~p~~~~~~~D~~-~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 413 KTLVPHLIKHINDTD-KDVRKAALEAVAAVM 442 (815)
T ss_pred HHHhHHHhhhccCCc-HHHHHHHHHHHHHHH
Confidence 356777888887776 789988887776544
No 312
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=73.54 E-value=39 Score=31.82 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=74.8
Q ss_pred CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHH
Q 048757 358 GGVRLLLDLARSP-PEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGA 435 (864)
Q Consensus 358 ~~i~~L~~lL~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 435 (864)
..++.|+++|+.+ +..+|.++.++|+.|.. ||...+.+..... .-. -...+...... .+.+....+ .-+.
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~---~l~~~~~~~-~~ee 81 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDI---SLPMMGISP-SSEE 81 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhh---HHhhccCCC-chHH
Confidence 4567788888764 68999999999999876 5532222111111 000 00111111111 111111111 2223
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHh
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLV 513 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~ 513 (864)
..-..++..|++.|++ ..-......++.++.++......+-.-.-...+|.++..++..+ +..++....-|..|.
T Consensus 82 ~y~~vvi~~L~~iL~D--~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~-~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRD--PSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCP-DSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHH
Confidence 3333467788888875 12223344666666666643322212223456888999998754 477776666665554
No 313
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=73.52 E-value=6.2 Score=33.09 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV 428 (864)
Q Consensus 360 i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 428 (864)
+...+..|.++.+.+|..++..|++|..... ...+...+.+..+...|+++++.|--+|..+|..|+.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3455667788889999999999999988655 2222224456677778899999999999999999876
No 314
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.44 E-value=3.6 Score=25.64 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=11.8
Q ss_pred CCcceEEeccCCCCCCCHHHHHHHHh
Q 048757 80 EMLEILHFGLDVCDRISSDAIKTVAY 105 (864)
Q Consensus 80 ~~L~~L~l~~~~c~~i~~~~l~~l~~ 105 (864)
++|++|+| ++ ..++++|...++.
T Consensus 2 ~~L~~LdL--~~-N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDL--SN-NKLGDEGARALAE 24 (28)
T ss_pred CccCEEEC--CC-CCCCHHHHHHHHH
Confidence 34555555 32 3455555555543
No 315
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=73.28 E-value=1.4e+02 Score=32.09 Aligned_cols=161 Identities=12% Similarity=0.049 Sum_probs=106.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC-CC-CcHHHHHhh-C-cHHHHHHHHcccC-C-CC--------HHHHHHHHHH
Q 048757 401 IDILADLARSTNRLVAEEVVGGLWNLSV-GE-DHKGAIARA-G-GIKALVDLIFKWS-S-WN--------DGVLERAAGA 466 (864)
Q Consensus 401 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~-~~~~~i~~~-g-~i~~L~~lL~~~~-~-~~--------~~v~~~a~~~ 466 (864)
+..+.+.|....+.+...+++.|..+.. +. .....+... . -.+.+.+++.... . .. +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778888888888888899999999876 43 444444432 1 2334555553200 0 01 2788777776
Q ss_pred HHHhcCCC-c-chHHHHh-cCcHHHHHHHHHccCchhHHHHHHHHHHH-HhhcCCCCcccchhhhccChHHHHHHHhcCC
Q 048757 467 LANLAADD-K-CSLEVAR-AGGVHALVMLARSFMFEGVQEQAARALAN-LVAHGDSNSNNAAVGLETGALEALVQLTFSK 542 (864)
Q Consensus 467 L~~L~~~~-~-~~~~i~~-~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~-L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~ 542 (864)
+..+.... . .+..+.+ .+.+..+.+.+.. +++++-...+.+|.. +.....-....+..+.....+..|..+....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 66665543 2 5555554 4557778888887 668888888888884 4443322345566777788889999987777
Q ss_pred CH----HHHHHHHHHHHHhcCChh
Q 048757 543 HE----GVRQEAAGALWNLSFDDR 562 (864)
Q Consensus 543 ~~----~v~~~a~~~L~~Ls~~~~ 562 (864)
++ .++..+-..|..++.++.
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCC
Confidence 66 788888888888877653
No 316
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=73.03 E-value=1.6 Score=46.14 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=55.6
Q ss_pred HHhcCCCccEEeccCCCCCCHHHhc--CCCCcCEEEEeCCCC--CCH-----HHHHHH--------------HhcCCCCc
Q 048757 129 LAKQCRQLVEVGFIDSGGVDEAALE--NLSSVRYLSIAGTRN--LNW-----SSAAIA--------------WSKLTSLV 185 (864)
Q Consensus 129 l~~~~~~L~~L~l~~c~~i~~~~~~--~~~~L~~L~l~~c~~--~~~-----~~l~~l--------------~~~~~~L~ 185 (864)
....+++|..|++++.. +.+-... .+..|+.|+++..+. +.. ..++.+ ..++.+|.
T Consensus 430 ~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 34446777777777642 3333222 445577777765421 000 011111 13566788
Q ss_pred EEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 186 GLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 186 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
.||+.+. +.+.+...++++.+|++|.+.|.|.-...
T Consensus 509 tLDL~nN--dlq~IPp~LgnmtnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 509 TLDLQNN--DLQQIPPILGNMTNLRHLELDGNPFRQPR 544 (565)
T ss_pred eeccCCC--chhhCChhhccccceeEEEecCCccCCCH
Confidence 8888764 45677788999999999999999876444
No 317
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=73.02 E-value=1e+02 Score=35.44 Aligned_cols=181 Identities=16% Similarity=0.095 Sum_probs=100.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 048757 315 LSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKA 394 (864)
Q Consensus 315 ~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 394 (864)
+.++..-..+++.-|..+|+-+..+...+ ............+..++..+. .++..+..++++|.|+..++..++-
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~----s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~ 624 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSN----SLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGREL 624 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchh----hhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHH
Confidence 33444455677778888887766544322 111111112335555665555 6678889999999999999877766
Q ss_pred HHhcCcHHHHHHHH----ccCCHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcccC--CCCHHHHHHHHHH
Q 048757 395 VSENGGIDILADLA----RSTNRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFKWS--SWNDGVLERAAGA 466 (864)
Q Consensus 395 i~~~g~i~~Lv~lL----~~~~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~v~~~a~~~ 466 (864)
+... .+.+...+ ..++..++...+....|.+. ...+- +.++.+.+...+...- ..+-+-.....-+
T Consensus 625 ~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~A 698 (745)
T KOG0301|consen 625 FMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVA 698 (745)
T ss_pred HHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 5543 22222222 22345555444444444432 11111 1445555555443211 1222334456678
Q ss_pred HHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHH
Q 048757 467 LANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAA 506 (864)
Q Consensus 467 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~ 506 (864)
|++|+..+.....+...-.+..+++.+++....+.....+
T Consensus 699 lgtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~~~k~~a 738 (745)
T KOG0301|consen 699 LGTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNPSGKNIA 738 (745)
T ss_pred HHhhccccHHHHHHHHhcCHHHHHHHHHHhccCchhhHHH
Confidence 8888888877778877778888888887654444444433
No 318
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.80 E-value=2.5e+02 Score=34.87 Aligned_cols=221 Identities=14% Similarity=0.048 Sum_probs=120.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcchHHHHh--cCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccCh
Q 048757 454 SWNDGVLERAAGALANLAADDKCSLEVAR--AGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGA 531 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~~~~~~i~~--~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~ 531 (864)
+.+..+|..+.++|..++..++......+ ......|..-+++ .....+...+.+|..|-...+ .+.. .++. ..
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs-~~~~~~~~rl~~L~~L~~~~~--~e~~-~~i~-k~ 739 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQS-SSSPAQASRLKCLKRLLKLLS--AEHC-DLIP-KL 739 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHhcc--HHHH-HHHH-HH
Confidence 45779999999999999988554332221 1122334444444 345667777888877765421 1111 1111 23
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcC--C--hhhHHHHHHCCChHHHHHHHHhcCCC-CHHHHHHHHHHHHHhccCch
Q 048757 532 LEALVQLTFSKHEGVRQEAAGALWNLSF--D--DRNREAIAAAGGVEALVALVRSCSSS-SQGLQERAAGALWGLSLSEA 606 (864)
Q Consensus 532 i~~L~~lL~~~~~~v~~~a~~~L~~Ls~--~--~~~~~~i~~~~~i~~Lv~lL~~~~~~-~~~v~~~A~~aL~~L~~~~~ 606 (864)
|+.++-.++..+...|+.|..+|..+.. . ++..+. ....+..++..+.....+ ...+...-.-++..+.....
T Consensus 740 I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 740 IPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHh
Confidence 3444444477788899999999988862 1 111000 011345555555431112 22222222334443332211
Q ss_pred -hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048757 607 -NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALA 682 (864)
Q Consensus 607 -~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~ 682 (864)
.-....-.+.+..+...|.+.+++++..|++.+..+.. .|+....-..+..++.+..++++.. ..+|...-..|-
T Consensus 818 ~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k-~~~r~Kvr~Lle 894 (1176)
T KOG1248|consen 818 NILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK-IKVRKKVRLLLE 894 (1176)
T ss_pred ccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh-HHHHHHHHHHHH
Confidence 11111112344555666778999999999999999987 6665554445567778888776654 445554444433
No 319
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=72.54 E-value=20 Score=32.48 Aligned_cols=73 Identities=12% Similarity=0.023 Sum_probs=59.2
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC---CCHHHHHHHHHHHHHH
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS---PPEGLQSEVAKAIANL 385 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~---~~~~~~~~a~~~L~~L 385 (864)
.++..|-+-|+++++.++..|...|..+....... ....+.....+..|+.++.. .++.++..++..+...
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~------f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKP------FHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChH------HHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 44678888999999999999999999988766532 34567777888889999865 4788999999999986
Q ss_pred hC
Q 048757 386 SV 387 (864)
Q Consensus 386 ~~ 387 (864)
+.
T Consensus 111 ~~ 112 (133)
T cd03561 111 SE 112 (133)
T ss_pred HH
Confidence 65
No 320
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=72.27 E-value=95 Score=29.86 Aligned_cols=154 Identities=17% Similarity=0.107 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhCC-c-----hhHHHHHhcC------cHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhC
Q 048757 374 LQSEVAKAIANLSVD-S-----KVAKAVSENG------GIDILAD-LARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAG 440 (864)
Q Consensus 374 ~~~~a~~~L~~L~~~-~-----~~~~~i~~~g------~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g 440 (864)
+|..|+.+|..++.. + .+...+.-.+ .-+.|+. ++.++++.+|..|+.+|..|-++.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs---------- 71 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS---------- 71 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc----------
Confidence 566777777777664 2 1222222222 2334444 567889999999999888875432
Q ss_pred cHHHHHHHHccc--CC-CCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCC
Q 048757 441 GIKALVDLIFKW--SS-WNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGD 517 (864)
Q Consensus 441 ~i~~L~~lL~~~--~~-~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~ 517 (864)
+..+..-++. +. .-...-..-+..+. ..-..|+..+..+.+..+..+.++++..|...
T Consensus 72 --k~~L~~Ae~~~~~~~sFtslS~tLa~~i~---------------~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~-- 132 (182)
T PF13251_consen 72 --KPFLAQAEESKGPSGSFTSLSSTLASMIM---------------ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQA-- 132 (182)
T ss_pred --HHHHHHHHhcCCCCCCcccHHHHHHHHHH---------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHcc--
Confidence 1111112110 00 00111111111111 12345677777777788888999999999985
Q ss_pred CCcccchhhhccChHHHHH----HHhcCCCHHHHHHHHHHHHHhcCC
Q 048757 518 SNSNNAAVGLETGALEALV----QLTFSKHEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 518 ~~~~~~~~~~~~~~i~~L~----~lL~~~~~~v~~~a~~~L~~Ls~~ 560 (864)
.+..|- +.|.++.++ .++.+.|.+++..++.++..+...
T Consensus 133 -tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 133 -TPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred -CChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 444433 235555544 566778999999999888877543
No 321
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=71.92 E-value=39 Score=28.70 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=55.1
Q ss_pred HhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 048757 356 RHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWN 425 (864)
Q Consensus 356 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~ 425 (864)
....+..|++-...++...+..++..|..+...|.....+.+.|+...|-++-...++..+..+-.++.+
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILDQ 97 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 3445566666667777778999999999999999999999999999998887766777777666555543
No 322
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=71.90 E-value=23 Score=40.79 Aligned_cols=134 Identities=14% Similarity=0.098 Sum_probs=93.6
Q ss_pred HHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHH-HccCCHHHHHHHHHHHHHhcCCCCcH
Q 048757 355 LRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADL-ARSTNRLVAEEVVGGLWNLSVGEDHK 433 (864)
Q Consensus 355 ~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~l-L~~~~~~v~~~a~~aL~~Ls~~~~~~ 433 (864)
+...++|.|...+++.+..+|..++..+...+..-+ ..++..-.+|.+-++ +++.+..++..++-+++.+..
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q----- 458 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ----- 458 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-----
Confidence 345678888888899999999999999998877433 234445556666665 456788899999999998872
Q ss_pred HHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc
Q 048757 434 GAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSF 496 (864)
Q Consensus 434 ~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~ 496 (864)
.+-...+++.+..+++.....++.+.....++..++.........+....++|.++.+...+
T Consensus 459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence 23344456666666665556788888888888877776655434445556677777776553
No 323
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=71.83 E-value=1.3 Score=49.50 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=25.9
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGT 166 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c 166 (864)
+|++|+.|+++++. |++ +..+. .++.|+.|+++++.--+-.++..++.|+.++++++
T Consensus 116 ~~~~L~~L~ls~N~-I~~--i~~l~-~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNK-ITK--LEGLS-TLTLLKELNLSGNLISDISGLESLKSLKLLDLSYN 172 (414)
T ss_pred hhhcchheeccccc-ccc--ccchh-hccchhhheeccCcchhccCCccchhhhcccCCcc
Confidence 45555566555554 332 11121 13445555555543222233334555555555554
No 324
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=70.67 E-value=1.4e+02 Score=31.12 Aligned_cols=224 Identities=14% Similarity=0.073 Sum_probs=137.0
Q ss_pred HHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc----hhHHHHHhcCcHHHHHHHHcc-C-CHHHHHHHHHHHHH
Q 048757 352 EAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS----KVAKAVSENGGIDILADLARS-T-NRLVAEEVVGGLWN 425 (864)
Q Consensus 352 ~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~g~i~~Lv~lL~~-~-~~~v~~~a~~aL~~ 425 (864)
..+.++|.+..+++-+...+-+.+..++.+..++-... .....+... -.+.+-.+++. . .+++.-.+...|..
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 45778999999999998888888888877777764421 111111111 12222223322 2 36666666667777
Q ss_pred hcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCc----HHHHHHHHHccCchh
Q 048757 426 LSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGG----VHALVMLARSFMFEG 500 (864)
Q Consensus 426 Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~----i~~Lv~ll~~~~~~~ 500 (864)
+...+.....+.+..-.......+.. ++-++...|..+...+..... ...++..... .+.--.+++++ +--
T Consensus 152 cirhe~LakiiL~s~~~~~FF~~vq~---p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyv 227 (342)
T KOG1566|consen 152 CIRHEFLAKIILESTNFEKFFLYVQL---PNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYV 227 (342)
T ss_pred HHhhHHHHHHHHcchhHHHHHHHHhc---cchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-cee
Confidence 66666555556565556666666642 444566666666666654432 2223332221 23345555653 456
Q ss_pred HHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhh----HHHHHHCCChHHH
Q 048757 501 VQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRN----REAIAAAGGVEAL 576 (864)
Q Consensus 501 v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~----~~~i~~~~~i~~L 576 (864)
++.++...|..+-....+...-.+.+.+...+..++.+|+++...+|.+|....+-...++.- +..+.+. -+.|
T Consensus 228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~N--r~KL 305 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRN--RPKL 305 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhC--cHHH
Confidence 678889999988875443333445566678889999999999999999999999988776532 3333332 2556
Q ss_pred HHHHHh
Q 048757 577 VALVRS 582 (864)
Q Consensus 577 v~lL~~ 582 (864)
++++..
T Consensus 306 l~~l~~ 311 (342)
T KOG1566|consen 306 LELLHD 311 (342)
T ss_pred HHHHHH
Confidence 666654
No 325
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=67.83 E-value=1.8e+02 Score=31.40 Aligned_cols=155 Identities=16% Similarity=0.096 Sum_probs=87.0
Q ss_pred HHHHHHHccCC-HHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh--c--------CCCHHHHHHHHH
Q 048757 312 TLLLSLMESSQ-QEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA--R--------SPPEGLQSEVAK 380 (864)
Q Consensus 312 ~~L~~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL--~--------~~~~~~~~~a~~ 380 (864)
..++..|.... ..-+..+...+..|+.+.+.. ++ +....-...|+.+- + .++..+...+.+
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L---~~-----~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslK 119 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDGL---EP-----LTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLK 119 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhcccccc---cc-----ccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHH
Confidence 56677776544 455566667777666444321 11 11111122222221 1 134578899999
Q ss_pred HHHHHhCC-chhHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcC-CCCcHHHH-HhhCcHHHHHHHHccc
Q 048757 381 AIANLSVD-SKVAKAVSENGGIDILADLARS-----TNRLVAEEVVGGLWNLSV-GEDHKGAI-ARAGGIKALVDLIFKW 452 (864)
Q Consensus 381 ~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~-~~~~~~~i-~~~g~i~~L~~lL~~~ 452 (864)
+|.|+..+ +..+..+.+..-...+++.+.. ....+...=++.|.-++. ..+.|.++ .+.+|++.+.+.+.+.
T Consensus 120 CLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 120 CLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDK 199 (532)
T ss_pred HHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhcc
Confidence 99999885 4566666666666666665422 222344445555555543 34565555 5889999999998752
Q ss_pred CC------C---C---HHHHHHHHHHHHHhcCCC
Q 048757 453 SS------W---N---DGVLERAAGALANLAADD 474 (864)
Q Consensus 453 ~~------~---~---~~v~~~a~~~L~~L~~~~ 474 (864)
-+ . + .+....+..++.|+..+.
T Consensus 200 lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 200 LGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred ccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 11 1 1 123345666777776654
No 326
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=67.55 E-value=44 Score=30.30 Aligned_cols=75 Identities=17% Similarity=0.028 Sum_probs=60.0
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh--hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS 604 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~ 604 (864)
.++..|-.-++++++.++..|+.+|-.+..+. .....+.....+..|+.++......++.++..+...+..++..
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45677788888999999999999999988873 3566777767888899999752236889999999999987753
No 327
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=66.62 E-value=1.7e+02 Score=30.54 Aligned_cols=201 Identities=13% Similarity=0.078 Sum_probs=130.0
Q ss_pred HHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-ch----HHHHhcCcHHHHHHHHHccC-chhHHHHHHHH
Q 048757 435 AIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CS----LEVARAGGVHALVMLARSFM-FEGVQEQAARA 508 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~----~~i~~~~~i~~Lv~ll~~~~-~~~v~~~a~~a 508 (864)
.+.++|....++..+- ...-+-+..++.+..++-...- .+ +.+. .-...+..+++... .+++-..+-..
T Consensus 74 ef~~~~~l~~lI~~l~---~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~--t~~e~~~~lv~~~~~~~~iaL~cg~m 148 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLP---KLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLE--TNPEILDNLVKGYENTPEIALTCGNM 148 (342)
T ss_pred HHHhCCchHHHHHhhh---cccchhhhHHHHHHHHHHHhhcCCcchHHHHHH--hCHHHHHHHHhhhccchHHHHHHHHH
Confidence 3567788888888884 3556667777777777754322 11 1111 11223333333333 25555555555
Q ss_pred HHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCC---C-hHHHHHHHHhc
Q 048757 509 LANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAG---G-VEALVALVRSC 583 (864)
Q Consensus 509 L~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~---~-i~~Lv~lL~~~ 583 (864)
+....+ .+...+.+....-+.......+.++-++...|..+...+-.. ......+.... . .+.--.++.+
T Consensus 149 lrEcir----he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s- 223 (342)
T KOG1566|consen 149 LRECIR----HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRS- 223 (342)
T ss_pred HHHHHh----hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcc-
Confidence 555555 345556667777778888888888888888888888776443 22222232222 2 2334556665
Q ss_pred CCCCHHHHHHHHHHHHHhccCchhhHHh----hhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc
Q 048757 584 SSSSQGLQERAAGALWGLSLSEANSIAI----GREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG 647 (864)
Q Consensus 584 ~~~~~~v~~~A~~aL~~L~~~~~~~~~i----~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~ 647 (864)
++--++..+...|+.+-.+..+...+ .....++.++.+|+++...+|-.|-....-+..++.
T Consensus 224 --~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpn 289 (342)
T KOG1566|consen 224 --ENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPN 289 (342)
T ss_pred --cceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCC
Confidence 88889999999999998775554333 345788999999999999999999999998887654
No 328
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=66.22 E-value=65 Score=30.98 Aligned_cols=108 Identities=20% Similarity=0.083 Sum_probs=69.8
Q ss_pred HHHHH-HhcCCCHHHHHHHHHHHHHhcCChhhHHHHHH-C-------------------CChHHHHHHHHhcCCCCHHHH
Q 048757 533 EALVQ-LTFSKHEGVRQEAAGALWNLSFDDRNREAIAA-A-------------------GGVEALVALVRSCSSSSQGLQ 591 (864)
Q Consensus 533 ~~L~~-lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~-~-------------------~~i~~Lv~lL~~~~~~~~~v~ 591 (864)
+.|+. ++.++++.+|..|+.++..|-.....--...+ . ..-..|+..|.. ..+..+.
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~--E~~~~~l 119 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQA--EKSPPVL 119 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc--ccccHHH
Confidence 34444 47788999999999999988544321111111 0 112344555654 4567788
Q ss_pred HHHHHHHHHhccCchhhHHhhhcC----CHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 592 ERAAGALWGLSLSEANSIAIGREG----GVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 592 ~~A~~aL~~L~~~~~~~~~i~~~~----~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
.....++..+....++... +.| .+..+..++.+.|.+++..+..++..+..
T Consensus 120 ~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 8899999999887444221 223 34555566778899999999888888864
No 329
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=66.12 E-value=28 Score=31.60 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=57.9
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCC--HHHHHHHHHHHHHHh
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPP--EGLQSEVAKAIANLS 386 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~--~~~~~~a~~~L~~L~ 386 (864)
.++..|-+-|+++++.++..|...|..+....... ....+.+.+.+..|..++.+.. +.++..++..+...+
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~------f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK------FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 44678888899999999999999999988765432 4467888899999999987632 348998988888755
Q ss_pred C
Q 048757 387 V 387 (864)
Q Consensus 387 ~ 387 (864)
.
T Consensus 111 ~ 111 (133)
T smart00288 111 D 111 (133)
T ss_pred H
Confidence 4
No 330
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=65.92 E-value=93 Score=36.04 Aligned_cols=187 Identities=14% Similarity=0.052 Sum_probs=120.5
Q ss_pred HhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCC-CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 437 ARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAAD-DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 437 ~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
...+.+|.+++++.. .+..+|.. .|.++-.. +.....+.+...+|.+...+.+ +++.+++..+.++..|+..
T Consensus 327 yq~~i~p~l~kLF~~---~Dr~iR~~---LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~D-Tn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKS---PDRQIRLL---LLQYIEKYIDHLTKQILNDQIFPHVALGFLD-TNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcC---cchHHHHH---HHHhHHHHhhhcCHHhhcchhHHHHHhhccc-CCHHHHHHHHHHHHHHHhh
Confidence 455678999999963 55555533 34444332 2244566778889999999988 5799999999999999864
Q ss_pred CCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCC-ChHHHHHHHHhcCCCCHHHHHHH
Q 048757 516 GDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAG-GVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~-~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
- +.. ......+..+.++-.+++..+|.+..-+|..++..... .++.+ .+..+.+.+++ +-...|.++
T Consensus 400 L-----~~~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkd---pf~paR~a~ 467 (690)
T KOG1243|consen 400 L-----SKR-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKD---PFVPARKAG 467 (690)
T ss_pred h-----chh-hhcHHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcC---CCCCchhhh
Confidence 1 111 23334455566555566777888888888888665221 11222 24455555665 555667777
Q ss_pred HHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 595 AGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 595 ~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
+.+++....--+. .=+....++.++-+.-+++..++..|-.++..+-.
T Consensus 468 v~~l~at~~~~~~--~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 468 VLALAATQEYFDQ--SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred hHHHhhcccccch--hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 7777755443211 22334567778888888888899888888777653
No 331
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=65.57 E-value=3.5 Score=25.48 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc
Q 048757 590 LQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS 626 (864)
Q Consensus 590 v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~ 626 (864)
+|..|+.+|+ .+.+..++++|++.|++
T Consensus 1 VR~~Aa~aLg----------~igd~~ai~~L~~~L~d 27 (27)
T PF03130_consen 1 VRRAAARALG----------QIGDPRAIPALIEALED 27 (27)
T ss_dssp HHHHHHHHHG----------GG-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH----------HcCCHHHHHHHHHHhcC
Confidence 5788999999 46667788899888753
No 332
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.56 E-value=4.1e+02 Score=34.18 Aligned_cols=144 Identities=12% Similarity=0.081 Sum_probs=92.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc-CCCCcHHH
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLS-VGEDHKGA 435 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls-~~~~~~~~ 435 (864)
+++..++..|..+...+|..|.+||..+.. +|.+.. ....-..+-.-+.+....|++.|+..++... ..++.-.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 466778888888889999999999999877 443211 1111112233345678889999999999653 34433322
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc-Cchh-HHHHHHHHHHHHh
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSF-MFEG-VQEQAARALANLV 513 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~-~~~~-v~~~a~~aL~~L~ 513 (864)
..+ .+..-+ .+....||..+..+++.++...+.-..+ +...+++++.- +.++ ++.-+..++.++-
T Consensus 893 yY~-----~i~erI---lDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 893 YYD-----QIIERI---LDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HHH-----HHHhhc---CCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 222 222222 3567899999999999999876633222 33345555432 2344 8888899999887
Q ss_pred hcCC
Q 048757 514 AHGD 517 (864)
Q Consensus 514 ~~~~ 517 (864)
..+.
T Consensus 960 F~p~ 963 (1692)
T KOG1020|consen 960 FTPV 963 (1692)
T ss_pred ccCC
Confidence 6543
No 333
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=3.4e+02 Score=33.08 Aligned_cols=274 Identities=11% Similarity=0.063 Sum_probs=141.9
Q ss_pred hCCHHHHHHHhc------C--CCHHHHHHHHHHHHHHhC----CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHH
Q 048757 357 HGGVRLLLDLAR------S--PPEGLQSEVAKAIANLSV----DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLW 424 (864)
Q Consensus 357 ~~~i~~L~~lL~------~--~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 424 (864)
.+.++.+++.|. . .++.-+..|+.++++|+. +..++..+ +.=.++.+.-.++++.--++.+|++.+.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 566777777776 2 245566678888888775 22222222 2223445555667778889999999999
Q ss_pred HhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhc---CcHHHHHHHHHccCchh
Q 048757 425 NLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARA---GGVHALVMLARSFMFEG 500 (864)
Q Consensus 425 ~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~---~~i~~Lv~ll~~~~~~~ 500 (864)
..+. +=.....+.+ ++......|.+ +..-.|+..|+-+|..+..+.+....-++. +.++.|+.+.+...++.
T Consensus 488 ~~~~~df~d~~~l~~--ale~t~~~l~~--d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~ 563 (1010)
T KOG1991|consen 488 QFSSIDFKDPNNLSE--ALELTHNCLLN--DNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD 563 (1010)
T ss_pred HHHhccCCChHHHHH--HHHHHHHHhcc--CCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH
Confidence 9984 2222222222 45566666663 566788889999999888776633222222 33445555555543322
Q ss_pred HHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC------CCHHHHHHHHHHHHHhcC---ChhhHHHHH---
Q 048757 501 VQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS------KHEGVRQEAAGALWNLSF---DDRNREAIA--- 568 (864)
Q Consensus 501 v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~Ls~---~~~~~~~i~--- 568 (864)
+....-..+...+.. -......+. ........+.+.. .+.+-...|.++|..++. +-++...+.
T Consensus 564 Lt~vme~iV~~fseE---lsPfA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~l 639 (1010)
T KOG1991|consen 564 LTNVMEKIVCKFSEE---LSPFAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQL 639 (1010)
T ss_pred HHHHHHHHHHHHHHh---hchhHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 211111111111110 000000000 1122334444442 123334455666655532 111111111
Q ss_pred HCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 569 AAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 569 ~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
+....+.+-.+|+. .-.++-+.+.....++..- ++....++. .++.+.+.+++..-+--....-+|.|...
T Consensus 640 e~~~l~vi~~iL~~---~i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 640 EPIVLPVIGFILKN---DITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 12234444455554 5556666677766665532 333333333 46667777776666666677777777654
No 334
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=64.00 E-value=1.5e+02 Score=30.24 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=65.0
Q ss_pred CChHHHHHHHHhcCC--------CCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHH--------HHHH
Q 048757 571 GGVEALVALVRSCSS--------SSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVD--------VHET 634 (864)
Q Consensus 571 ~~i~~Lv~lL~~~~~--------~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~--------v~~~ 634 (864)
..+|.|+.+|.+... ++...-..|...|+ .+.+..++++++++++-++.. +-+.
T Consensus 31 ~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLa----------q~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~ 100 (249)
T PF06685_consen 31 EITPELLKILEDAIERANELLDDEEYNLHFYALYLLA----------QFREERALPPLIRLFSQDDDFLEDLFGDFITED 100 (249)
T ss_pred HhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHH----------HHhhhhhHHHHHHHHcCCcchHHHHHcchhHhH
Confidence 357777777765110 22233456666666 577888999999999754431 2223
Q ss_pred HHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCC-cHHHHHHHHHHHHHhhcCCc
Q 048757 635 AAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSL-SKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 635 a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~-~~~~r~~aa~aL~~l~~~~~ 689 (864)
...+|..++ .|-++.|.+++.+++ .+-+|..|..||..+....+
T Consensus 101 l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 101 LPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred HHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 334444443 577889999998876 45789999999998887766
No 335
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.58 E-value=1.7e+02 Score=33.98 Aligned_cols=146 Identities=18% Similarity=0.040 Sum_probs=94.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcC--Chh----hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch
Q 048757 533 EALVQLTFSKHEGVRQEAAGALWNLSF--DDR----NREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA 606 (864)
Q Consensus 533 ~~L~~lL~~~~~~v~~~a~~~L~~Ls~--~~~----~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~ 606 (864)
|.|.+-|+-++..||.+|+..+.++-- +++ ....+.+. -...|.++|.+ +-|.+|..|..-++....
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d---~~p~VRS~a~~gv~k~~s--- 249 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLED---PYPMVRSTAILGVCKITS--- 249 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcC---CCchHHHHHHHHHHHHHH---
Confidence 556677888999999999999988732 222 23344442 35677888887 889999988777665332
Q ss_pred hhHHhhhcCCHHHHHHHH--------ccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHH
Q 048757 607 NSIAIGREGGVAPLIALA--------RSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAA 678 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL--------~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa 678 (864)
.+++--.-..+.++| .+...+||..+...|-.+..+|.....+ + -++|.|-..+.+. ++.||..+.
T Consensus 250 ---~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l-e-~~Lpal~~~l~D~-se~VRvA~v 323 (1005)
T KOG1949|consen 250 ---KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL-E-QLLPALRYSLHDN-SEKVRVAFV 323 (1005)
T ss_pred ---HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH-H-HHHHhcchhhhcc-chhHHHHHH
Confidence 222211111222333 2455789999999999998877654222 2 3455565666665 488999888
Q ss_pred HHHHHhhcCCccc
Q 048757 679 LALAYIVDGRMED 691 (864)
Q Consensus 679 ~aL~~l~~~~~~~ 691 (864)
..|..+...+.-.
T Consensus 324 d~ll~ik~vra~~ 336 (1005)
T KOG1949|consen 324 DMLLKIKAVRAAK 336 (1005)
T ss_pred HHHHHHHhhhhhh
Confidence 8887776665533
No 336
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=63.26 E-value=5.5 Score=21.52 Aligned_cols=12 Identities=25% Similarity=0.553 Sum_probs=6.9
Q ss_pred CCcCEEEEeCCC
Q 048757 156 SSVRYLSIAGTR 167 (864)
Q Consensus 156 ~~L~~L~l~~c~ 167 (864)
++|+.|++++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 457777777765
No 337
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=61.95 E-value=11 Score=34.29 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCCchhHHHHHhcCc--HHHHHHHHccCCHHHHHHHHHHHHHh
Q 048757 373 GLQSEVAKAIANLSVDSKVAKAVSENGG--IDILADLARSTNRLVAEEVVGGLWNL 426 (864)
Q Consensus 373 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~--i~~Lv~lL~~~~~~v~~~a~~aL~~L 426 (864)
-.+..|...|+.| . || |++|+.+|.++++.+...|+.+|.+-
T Consensus 78 Is~~~Av~LLGtM----------~--GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~T 121 (154)
T PF11791_consen 78 ISPAEAVELLGTM----------L--GGYNVQPLIDLLKSDDEELAEEAAEALKNT 121 (154)
T ss_dssp B-HHHHHHHHTTS-------------SSTTHHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred cCHHHHHHHHhhc----------c--CCCcHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence 3456677777763 2 44 88999999888889999999999874
No 338
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.41 E-value=1.5e+02 Score=30.43 Aligned_cols=164 Identities=15% Similarity=0.036 Sum_probs=93.8
Q ss_pred HHHHHHccCchhHHHHHHHHHHHHhhcCCC----CcccchhhhccChHHHHHHHhcCCC----HHHHHHHHHHHHHhcCC
Q 048757 489 LVMLARSFMFEGVQEQAARALANLVAHGDS----NSNNAAVGLETGALEALVQLTFSKH----EGVRQEAAGALWNLSFD 560 (864)
Q Consensus 489 Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~----~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~Ls~~ 560 (864)
+++-+++ ....+.+...|..|...+++ ..+.|-.+.=...+|.++.-+++++ ......++..|..++..
T Consensus 69 l~KGL~S---s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~ 145 (262)
T PF14225_consen 69 LLKGLRS---SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEA 145 (262)
T ss_pred HhCccCC---CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHh
Confidence 3444444 33456677777777765331 1112333332345666777776666 13445667788887633
Q ss_pred hhhHHHHHHCCChHHHHHHHHh-cCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 048757 561 DRNREAIAAAGGVEALVALVRS-CSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGAL 639 (864)
Q Consensus 561 ~~~~~~i~~~~~i~~Lv~lL~~-~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 639 (864)
.. ...+..+...... ...+..+....++..|+.-.. ++ .+...+..|+.+|.++.+.++..+...|
T Consensus 146 ~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL 212 (262)
T PF14225_consen 146 QG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRRKTLQIL 212 (262)
T ss_pred CC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 11 1223333332222 122334445555555553111 00 1234566788999999999999999999
Q ss_pred HHhcCCcccHHHHHhCCcHHHHHHHhcCCC
Q 048757 640 WNLAFNPGNALCIVEGGGVQALIHLCSSSL 669 (864)
Q Consensus 640 ~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~ 669 (864)
+.+..+.+.+.. ...+.+.+|.++++++.
T Consensus 213 ~~ll~~~d~~~~-~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 213 KVLLPHVDMRSP-HGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHhccccCCCC-cchHHHHHHHHHhCCcc
Confidence 999886555544 45567999999998765
No 339
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=61.34 E-value=2e+02 Score=29.57 Aligned_cols=159 Identities=17% Similarity=0.032 Sum_probs=90.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcCCC--------CcHHHHHhhCcHHHHHHHHcccCCCC----HHHHHHHHHHHHHhc
Q 048757 404 LADLARSTNRLVAEEVVGGLWNLSVGE--------DHKGAIARAGGIKALVDLIFKWSSWN----DGVLERAAGALANLA 471 (864)
Q Consensus 404 Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--------~~~~~i~~~g~i~~L~~lL~~~~~~~----~~v~~~a~~~L~~L~ 471 (864)
+++-+.+. ...+.+...|..|...+ +.|-.+.-.+.+|.++.-+.+ ++ ......++..|..++
T Consensus 69 l~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~---~~~i~~~~~~~~~A~~La~~a 143 (262)
T PF14225_consen 69 LLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDD---PNPIQPDQECIEIAEALAQVA 143 (262)
T ss_pred HhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcc---cccccccHHHHHHHHHHHHHH
Confidence 34444443 34466677777775422 234444444567777777764 22 133346677788877
Q ss_pred CCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHH
Q 048757 472 ADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAA 551 (864)
Q Consensus 472 ~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 551 (864)
.... ...+..++.....+...+.......+...++..- -+. .+...+..|+.+|.++-+.++....
T Consensus 144 ~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L 209 (262)
T PF14225_consen 144 EAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPD-----HEFQILTFLLGLLENGPPWLRRKTL 209 (262)
T ss_pred HhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cch-----hHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 4332 1223333343333333333333333444444310 011 1335667889999999999999999
Q ss_pred HHHHHhcCChhhHHHHHHCCChHHHHHHHHh
Q 048757 552 GALWNLSFDDRNREAIAAAGGVEALVALVRS 582 (864)
Q Consensus 552 ~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~ 582 (864)
.+|..+-...+.+.. .....+.++.+++.+
T Consensus 210 ~iL~~ll~~~d~~~~-~~~dlispllrlL~t 239 (262)
T PF14225_consen 210 QILKVLLPHVDMRSP-HGADLISPLLRLLQT 239 (262)
T ss_pred HHHHHHhccccCCCC-cchHHHHHHHHHhCC
Confidence 999998776554433 334468899999985
No 340
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=61.05 E-value=69 Score=29.41 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=60.2
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL 603 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~ 603 (864)
.++..|.+-+.++++.++..|+.+|-.+..+ ......+.+.+.++.|+.++.. ..++.|+..++..+..++.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT--TKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHH
Confidence 5667778888889999999999999988887 3456777788899999999975 5789999999999988774
No 341
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=60.42 E-value=35 Score=31.45 Aligned_cols=71 Identities=8% Similarity=0.067 Sum_probs=58.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcC
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSVD--SKVAKAVSENGGIDILADLARS-TNRLVAEEVVGGLWNLSV 428 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~ 428 (864)
.++..|..-|.+.++.++..|+..|-.+..+ ......+....-+..|++++.. .++.|+..++..+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4556677778889999999999999999885 4677788888889999999977 788899999888877653
No 342
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=59.82 E-value=4e+02 Score=34.87 Aligned_cols=130 Identities=18% Similarity=0.126 Sum_probs=70.6
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCC-hh-hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh-c
Q 048757 538 LTFSKHEGVRQEAAGALWNLSFD-DR-NREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR-E 614 (864)
Q Consensus 538 lL~~~~~~v~~~a~~~L~~Ls~~-~~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~-~ 614 (864)
++++.++.++.-+......+-.. +. .++ .++..|+..+.+ ++......|+.+|..|+... ...+.. .
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qq-----eVv~~Lvthi~s---g~~~ev~~aL~vL~~L~~~~--~~~l~~fa 512 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDSYCQQ-----EVVGALVTHIGS---GNSQEVDAALDVLCELAEKN--PSELQPFA 512 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-HHHHH-----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH---HHHHHHTH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccchhHH-----HHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhcc--HHHHHHHH
Confidence 46788888888777666655333 22 233 356778888876 66666679999999988641 112222 2
Q ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHH-HHhcCCCcHHHHHHHHH
Q 048757 615 GGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALI-HLCSSSLSKMARFMAAL 679 (864)
Q Consensus 615 ~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~-~ll~~~~~~~~r~~aa~ 679 (864)
..+..+++.+.+=+..-.+.....|+.|+........-++.. +..++ +.+.+++ +..+..++.
T Consensus 513 ~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~de-l~ivIRKQLss~~-~~~K~~GII 576 (1426)
T PF14631_consen 513 TFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQDE-LHIVIRKQLSSSN-PKYKRIGII 576 (1426)
T ss_dssp HHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHHHH-HHHHHHHHHT-SS-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhHHH-HHHHHHHhhcCCc-HHHHHHhHH
Confidence 334445555555555555567888888876332211111212 33444 4555654 666655443
No 343
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=59.21 E-value=2.5e+02 Score=30.04 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=108.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHh-C-CHHHHHHHhcC-----CC--------HHHH
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRH-G-GVRLLLDLARS-----PP--------EGLQ 375 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~-~-~i~~L~~lL~~-----~~--------~~~~ 375 (864)
++.+.+.|.+..+.+...+...|..++.-+.. .....+... + ..+.+.+++.. .+ +.+|
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g------~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGG------ALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCH------HHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Confidence 67777888888888888999999998763321 123334332 2 23445555531 11 2788
Q ss_pred HHHHHHHHHHhC--CchhHHHHHhcCc-HHHHHHHHccCCHHHHHHHHHHHHH-hcCC----CCcHHHHHhhCcHHHHHH
Q 048757 376 SEVAKAIANLSV--DSKVAKAVSENGG-IDILADLARSTNRLVAEEVVGGLWN-LSVG----EDHKGAIARAGGIKALVD 447 (864)
Q Consensus 376 ~~a~~~L~~L~~--~~~~~~~i~~~g~-i~~Lv~lL~~~~~~v~~~a~~aL~~-Ls~~----~~~~~~i~~~g~i~~L~~ 447 (864)
......+..+.. ++..+..+.+.+. +..+.+-|..+++++....+.+|.. +..+ +..+..+.....+..|+.
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 888887777655 5677777776655 7778888888889999999999984 5443 345667778888999999
Q ss_pred HHcccCCC--CHHHHHHHHHHHHHhcCCCc
Q 048757 448 LIFKWSSW--NDGVLERAAGALANLAADDK 475 (864)
Q Consensus 448 lL~~~~~~--~~~v~~~a~~~L~~L~~~~~ 475 (864)
+... ..+ ...+.+.+-..|..+|.++.
T Consensus 212 Ly~~-~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSR-DGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred Hhcc-cCCcccchHHHHHHHHHHHHhcCCC
Confidence 6653 111 23788888899999987665
No 344
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=59.12 E-value=39 Score=31.96 Aligned_cols=110 Identities=20% Similarity=0.073 Sum_probs=72.2
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCC--ChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC---
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAG--GVEALVALVRSCSSSSQGLQERAAGALWGLSLS--- 604 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~--~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--- 604 (864)
..+..+..+|++++++-|..++..+..+..... .+.+.+++ .+..++.+|+. ++++.+.+.|+.+|..+...
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~--~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEK--PDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhcC
Confidence 345567788999999889888888887765532 23333432 48888999987 56788899999998887632
Q ss_pred -chhhHHhhh---cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 605 -EANSIAIGR---EGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 605 -~~~~~~i~~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
++....+.- .+.++.+++++++ +.....++.+|..+..
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 443333332 2344555555554 5566667777777654
No 345
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.58 E-value=47 Score=30.37 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=56.2
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSVD--SKVAKAVSENGGIDILADLARS------TNRLVAEEVVGGLWNLS 427 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls 427 (864)
.++..+..-|.++++.++..|+..|-.+..+ +.....+...+-+..|++++.. .++.|+..++..+..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3556677778899999999999999999884 5677888888888899999853 46789988888776654
No 346
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=57.48 E-value=3.8 Score=36.84 Aligned_cols=13 Identities=38% Similarity=0.276 Sum_probs=6.1
Q ss_pred CcCcCeeeecccC
Q 048757 107 CPKLRRLWLSGVR 119 (864)
Q Consensus 107 ~~~L~~L~l~~~~ 119 (864)
+|.|+.|+++.++
T Consensus 99 m~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 99 MPALRSLNLRFNP 111 (177)
T ss_pred hHHhhhcccccCc
Confidence 4444444444443
No 347
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=56.84 E-value=70 Score=28.96 Aligned_cols=73 Identities=15% Similarity=0.035 Sum_probs=57.7
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL 603 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~ 603 (864)
.++..|.+-+.++++.++..|+.+|-.+..+ +.....+.+.++++.|..++.. ....+.++..++..+..++.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~-~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKP-KYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHH
Confidence 4566777778889999999999999988887 3456777788899999999986 22334599999999987764
No 348
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=56.63 E-value=2.3e+02 Score=28.80 Aligned_cols=85 Identities=24% Similarity=0.219 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHH--------HHHHHHHHHHHhcCCCCcHHHHHhhCcHHHH
Q 048757 374 LQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRL--------VAEEVVGGLWNLSVGEDHKGAIARAGGIKAL 445 (864)
Q Consensus 374 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~--------v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L 445 (864)
....|+..|+. +.+..+.++++++++.++.. +-+....+|..+ -.|-++.|
T Consensus 58 ~~~~a~~LLaq----------~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv-----------~~G~~~~L 116 (249)
T PF06685_consen 58 LHFYALYLLAQ----------FREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASV-----------GDGDIEPL 116 (249)
T ss_pred HHHHHHHHHHH----------HhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHH-----------hCCCHHHH
Confidence 34455556665 66788999999999765432 222233333333 34568888
Q ss_pred HHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHH
Q 048757 446 VDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEV 480 (864)
Q Consensus 446 ~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i 480 (864)
.+++.+ +.-+.-+|..|..+|..++...+ .|..+
T Consensus 117 ~~li~~-~~~~~yvR~aa~~aL~~l~~~~~~~Re~v 151 (249)
T PF06685_consen 117 KELIED-PDADEYVRMAAISALAFLVHEGPISREEV 151 (249)
T ss_pred HHHHhC-CcHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 899876 44556788899999999887655 45554
No 349
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=55.27 E-value=1.2e+02 Score=32.81 Aligned_cols=100 Identities=10% Similarity=-0.002 Sum_probs=60.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCC-------CHHHHHHHHHHHHH
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSP-------PEGLQSEVAKAIAN 384 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-------~~~~~~~a~~~L~~ 384 (864)
..+.+.+.+.++..|..|...|.+ |... ...+|.++..+.+. +........+++..
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~t----D~gl-------------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~A 243 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRT----DPGL-------------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRA 243 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhcc----CCCc-------------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHH
Confidence 456666666777777776666654 2111 33456666655431 45555667777777
Q ss_pred HhCCchhHHHHHhcCcHHHHHHHHc-----c-----CCHHHHHHHHHHHHHhcC
Q 048757 385 LSVDSKVAKAVSENGGIDILADLAR-----S-----TNRLVAEEVVGGLWNLSV 428 (864)
Q Consensus 385 L~~~~~~~~~i~~~g~i~~Lv~lL~-----~-----~~~~v~~~a~~aL~~Ls~ 428 (864)
|..++...-...-..-+|.++.++- . ..-.+|+.|+..|..++.
T Consensus 244 Ll~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~ 297 (343)
T cd08050 244 LLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICR 297 (343)
T ss_pred HhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 8777755444444446777776551 1 223589999999888864
No 350
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=55.05 E-value=3.5e+02 Score=36.14 Aligned_cols=269 Identities=13% Similarity=0.043 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHHhcC----CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcH
Q 048757 411 TNRLVAEEVVGGLWNLSV----GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGV 486 (864)
Q Consensus 411 ~~~~v~~~a~~aL~~Ls~----~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i 486 (864)
.+..+...|+..|..++. .++.-..=.+...+.++..++.. +.+.++++....++.+|...... . +.. |.
T Consensus 1149 ~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~--s~~~eVrE~ILeCv~qmI~s~~~--n-IkS-GW 1222 (1780)
T PLN03076 1149 ENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRK--SNAVEIRELIIRCVSQMVLSRVN--N-VKS-GW 1222 (1780)
T ss_pred cchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHh--h-hhc-Cc
Confidence 456788888888888765 12211111233467888887874 67789999999999988643221 1 122 45
Q ss_pred HHHHHHHH---ccCchhHHHHHHHHHHHHhhcCCC-Ccc-cchhhhccChHHHHHHHhcCC-CHHHHHHHHHHHHHhcCC
Q 048757 487 HALVMLAR---SFMFEGVQEQAARALANLVAHGDS-NSN-NAAVGLETGALEALVQLTFSK-HEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 487 ~~Lv~ll~---~~~~~~v~~~a~~aL~~L~~~~~~-~~~-~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~Ls~~ 560 (864)
+.++.++. ....+.+-..|-.++..+....-. -+. ....+ ...|..|..+-... +.++-..|...||+++..
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 55555554 223466666777777766642100 000 00011 13444455554433 466777888888866211
Q ss_pred h-h---------------------------hHHHHH-----HCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--c
Q 048757 561 D-R---------------------------NREAIA-----AAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS--E 605 (864)
Q Consensus 561 ~-~---------------------------~~~~i~-----~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~ 605 (864)
- + .-..+. ....++.|..+-.-+....++||..|+..|..+-.. .
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 0 0 000000 011244444432222247899999999999876532 2
Q ss_pred hhhHHhhh---cCCHHHHHHHHccC-----------------------CHHHHHHHHHHHHHhcC----CcccHHHHHhC
Q 048757 606 ANSIAIGR---EGGVAPLIALARSA-----------------------VVDVHETAAGALWNLAF----NPGNALCIVEG 655 (864)
Q Consensus 606 ~~~~~i~~---~~~i~~Lv~lL~~~-----------------------~~~v~~~a~~aL~~L~~----~~~~~~~i~~~ 655 (864)
.....+++ .+++-|++.-++.. +..+.+....+|..+.. +-+.-..+. .
T Consensus 1381 ~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~ 1459 (1780)
T PLN03076 1381 LFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-K 1459 (1780)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 22222222 24556666555421 01234455556665543 111111111 2
Q ss_pred CcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 656 GGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 656 g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+.+..|...+..++ +.+-.-+..+|.++...+.
T Consensus 1460 ~~l~ll~~ci~q~n-~~la~ig~~~l~~li~~ng 1492 (1780)
T PLN03076 1460 KVLMLLVSFIKRPH-QSLAGIGIAAFVRLMSNAG 1492 (1780)
T ss_pred HHHHHHHHHHcCch-HHHHHHHHHHHHHHHHHhh
Confidence 34444555555554 4455556666666665544
No 351
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=53.90 E-value=16 Score=23.00 Aligned_cols=28 Identities=36% Similarity=0.255 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcC
Q 048757 630 DVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSS 667 (864)
Q Consensus 630 ~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~ 667 (864)
.+|..|+.+|+++. ...+++.|++.+.+
T Consensus 2 ~vR~~aa~aLg~~~----------~~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG----------DEEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC----------CHhHHHHHHHHhcC
Confidence 47889999999996 34567788887755
No 352
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=53.33 E-value=3.3e+02 Score=29.59 Aligned_cols=112 Identities=16% Similarity=0.171 Sum_probs=71.1
Q ss_pred HHHHHhhCCchhHHHHHhhcHHHHHHHHc--c--------CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCH
Q 048757 291 LMRISKKNPKEFDDFWLRQGATLLLSLME--S--------SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGV 360 (864)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~gv~~L~~lL~--~--------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i 360 (864)
..+++..+...+..+..++-+..|+.+-+ + +|..+...+..+|+|+.+..... +.........
T Consensus 69 tvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~Sq~~-------q~~~~~~~~~ 141 (532)
T KOG4464|consen 69 TVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHSQRA-------QDLFLENPLT 141 (532)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhccHHH-------HHHHHhhhhH
Confidence 45677888888888777777777777652 1 24588999999999998777432 3445555556
Q ss_pred HHHHHHhcC-----CCHHHHHHHHHHHHHHhC-CchhHH-HHHhcCcHHHHHHHHc
Q 048757 361 RLLLDLARS-----PPEGLQSEVAKAIANLSV-DSKVAK-AVSENGGIDILADLAR 409 (864)
Q Consensus 361 ~~L~~lL~~-----~~~~~~~~a~~~L~~L~~-~~~~~~-~i~~~g~i~~Lv~lL~ 409 (864)
..+++.+.. ....++..-.+.|.-++. .++.|. .+.+.+|++.+.+.+.
T Consensus 142 ~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~le 197 (532)
T KOG4464|consen 142 GKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLE 197 (532)
T ss_pred HHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhh
Confidence 666665432 122333444444444443 334444 4557788888888875
No 353
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=53.23 E-value=3.4e+02 Score=29.64 Aligned_cols=143 Identities=15% Similarity=-0.024 Sum_probs=78.1
Q ss_pred HhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChH-HHHHHHhc------CCCHHHHHHHHHH
Q 048757 481 ARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGAL-EALVQLTF------SKHEGVRQEAAGA 553 (864)
Q Consensus 481 ~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i-~~L~~lL~------~~~~~v~~~a~~~ 553 (864)
.+.+-.+.+-+-+..++....|.+|...|..|+.. .+ ..+. +.+ ..+-.++. +.+..-+..|...
T Consensus 207 fEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~---~~---~~v~--~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~L 278 (370)
T PF08506_consen 207 FEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKK---FE---KQVT--SILMQYIQQLLQQYASNPSNNWRSKDGALYL 278 (370)
T ss_dssp HHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHH---HH---HHHH--HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHH
T ss_pred HccCHHHHHHhhccccccCCcHHHHHHHHHHHHHH---Hh---HHHH--HHHHHHHHHHHHHHhhCCcccHHHHHHHHHH
Confidence 34444444444443333345677888889899873 11 1111 111 12222333 3466778889999
Q ss_pred HHHhcCChhh-------------HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHH
Q 048757 554 LWNLSFDDRN-------------REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAP 619 (864)
Q Consensus 554 L~~Ls~~~~~-------------~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~ 619 (864)
+..++..... -..+.....+|.|. ...+..|-++..|++.+..+-.. ++ ..+ .+.+|.
T Consensus 279 i~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~----~~~~~~piLka~aik~~~~Fr~~l~~--~~l--~~~~~~ 350 (370)
T PF08506_consen 279 IGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ----PDVNSHPILKADAIKFLYTFRNQLPK--EQL--LQIFPL 350 (370)
T ss_dssp HHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-----SS-S-HHHHHHHHHHHHHHGGGS-H--HHH--HHHHHH
T ss_pred HHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc----ccCCCCcchHHHHHHHHHHHHhhCCH--HHH--HHHHHH
Confidence 9888775421 12222222344333 11246788899999988876543 21 122 237899
Q ss_pred HHHHHccCCHHHHHHHHHHH
Q 048757 620 LIALARSAVVDVHETAAGAL 639 (864)
Q Consensus 620 Lv~lL~~~~~~v~~~a~~aL 639 (864)
++++|++++.-|+..|+.++
T Consensus 351 l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 351 LVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHhCCCCcchhhhhhhhC
Confidence 99999999999999988764
No 354
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=53.11 E-value=2.2e+02 Score=27.51 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=51.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSE-NGGIDILADLARSTNRLVAEEVVGGLWNLSV 428 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~ 428 (864)
..++.++++.-+++..++..|+..+.-+.... ++. ...+|.|+.+..++++.++..|...+..+..
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-----LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQG-----LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-----CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999843311 000 1237889999999999999999999999865
No 355
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=52.97 E-value=2.6e+02 Score=32.65 Aligned_cols=187 Identities=11% Similarity=0.031 Sum_probs=115.8
Q ss_pred HhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 048757 481 ARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 481 ~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~ 560 (864)
...+.+|.|+++++.. +..+|..-+.-+-.... ..-..+.+..++|.+..-+.+.++-+|+.++..+..|+.-
T Consensus 327 yq~~i~p~l~kLF~~~-Dr~iR~~LL~~i~~~i~------~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSP-DRQIRLLLLQYIEKYID------HLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred cccchhhhHHHHhcCc-chHHHHHHHHhHHHHhh------hcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 4567899999999984 46666655444443332 3344566778999999999999999999999999888543
Q ss_pred hhhHHHHHHCCChHHHHHHHHhc-CCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 048757 561 DRNREAIAAAGGVEALVALVRSC-SSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGAL 639 (864)
Q Consensus 561 ~~~~~~i~~~~~i~~Lv~lL~~~-~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 639 (864)
=..+ ..-..+++.+... ......+|.+..-+|+.++..-.. ...+.-.+-+..+-++++-...|..+..++
T Consensus 400 L~~~------~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~--~~R~~vL~~aftralkdpf~paR~a~v~~l 471 (690)
T KOG1243|consen 400 LSKR------NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA--SVRKRVLASAFTRALKDPFVPARKAGVLAL 471 (690)
T ss_pred hchh------hhcHHHHHHHHhhCccccCcccccceeeecccccccch--hhhccccchhhhhhhcCCCCCchhhhhHHH
Confidence 1111 1112233333321 124567788888888877654111 112222223445567777778888888888
Q ss_pred HHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 640 WNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 640 ~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
+......+.... ....+|.++-+..+++ +.+|..|-.++..+-
T Consensus 472 ~at~~~~~~~~v--a~kIlp~l~pl~vd~e-~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 472 AATQEYFDQSEV--ANKILPSLVPLTVDPE-KTVRDTAEKAIRQFL 514 (690)
T ss_pred hhcccccchhhh--hhhccccccccccCcc-cchhhHHHHHHHHHH
Confidence 877764433321 2245677777777765 667777666655443
No 356
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=52.03 E-value=4.7e+02 Score=30.93 Aligned_cols=279 Identities=14% Similarity=0.039 Sum_probs=145.7
Q ss_pred cCcHHHHHHHHcc--------CCHHHHHHHHHHHHHhcC--C-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHH
Q 048757 398 NGGIDILADLARS--------TNRLVAEEVVGGLWNLSV--G-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGA 466 (864)
Q Consensus 398 ~g~i~~Lv~lL~~--------~~~~v~~~a~~aL~~Ls~--~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~ 466 (864)
.|.++.++..|.. +++.-.+.|.+.+.++.. + +.-.+-+.+.=.++.++..++ +...-++..|+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~---s~ygfL~Srace~ 483 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFR---SNYGFLKSRACEF 483 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhc---CcccchHHHHHHH
Confidence 4678888888831 245566777777777754 2 222333344445566666665 4666778889998
Q ss_pred HHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhc--cChHHHHHHHhcCCCH
Q 048757 467 LANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLE--TGALEALVQLTFSKHE 544 (864)
Q Consensus 467 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~ 544 (864)
+..+..+ .++...-..+.+.....+++ .+-.++..|+-||..+..+. .....+.+ .+.++.|+.+-+.-+.
T Consensus 484 is~~eeD--fkd~~ill~aye~t~ncl~n-n~lpv~ieAalAlq~fi~~~----q~h~k~sahVp~tmekLLsLSn~fei 556 (970)
T COG5656 484 ISTIEED--FKDNGILLEAYENTHNCLKN-NHLPVMIEAALALQFFIFNE----QSHEKFSAHVPETMEKLLSLSNTFEI 556 (970)
T ss_pred HHHHHHh--cccchHHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHHhch----hhhHHHHhhhhHHHHHHHHhcccccc
Confidence 8888433 22222223345555666776 45788999999999998742 23232221 1233334443333343
Q ss_pred HHHHHHHHHHH-HhcCC-hhhHHHHHHCCChHHHHHH----HHhc---CCCCHHHHHHHHHHHHHhcc---CchhhHHhh
Q 048757 545 GVRQEAAGALW-NLSFD-DRNREAIAAAGGVEALVAL----VRSC---SSSSQGLQERAAGALWGLSL---SEANSIAIG 612 (864)
Q Consensus 545 ~v~~~a~~~L~-~Ls~~-~~~~~~i~~~~~i~~Lv~l----L~~~---~~~~~~v~~~A~~aL~~L~~---~~~~~~~i~ 612 (864)
++.......+. ..+.. .+....++. ..++.++++ +... .+..++-+..|.+.|..+.. +-+++..+.
T Consensus 557 D~LS~vMe~fVe~fseELspfa~eLa~-~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vL 635 (970)
T COG5656 557 DPLSMVMESFVEYFSEELSPFAPELAG-SLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVL 635 (970)
T ss_pred hHHHHHHHHHHHHhHHhhchhHHHHHH-HHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 43333333322 22111 111111111 123333333 3321 01123456677777776542 333333332
Q ss_pred h---cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 613 R---EGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 613 ~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
+ ....|.+--.|++.-.+.-..|+..|-+.......-.. +..|..+.|.+++.++.+..--..++.++.|+..-.
T Consensus 636 k~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~p-imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG 713 (970)
T COG5656 636 KYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEP-IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYG 713 (970)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhh-hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhC
Confidence 2 23334444446667778888888888877653322221 234666677777777654222345667787776533
No 357
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=51.47 E-value=2.6e+02 Score=28.89 Aligned_cols=58 Identities=10% Similarity=0.206 Sum_probs=35.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
+.-|..+|+.+|++-+ .+..+++.. .++....+|.|+.. .+++.+...+++.|.+|+.
T Consensus 15 LkdL~r~lr~dd~~~~-~v~r~lg~~----------------~iv~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 15 LKDLKRFLRRDDEDQR-DVRRQLGEW----------------NIVQKDLIPILISY--KDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHhCcchH-HHHHHHHHh----------------chhhhhHHHHHHhc--cCchHHHHHHHHHHHHhCC
Confidence 5667788877766655 445555542 14444445544332 2467788888888888876
No 358
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=51.10 E-value=13 Score=22.70 Aligned_cols=25 Identities=4% Similarity=0.127 Sum_probs=11.9
Q ss_pred cceeeeecCCCCCHHHHHHHHhCCC
Q 048757 56 LREINVEFCRELTDAIFSAIVARHE 80 (864)
Q Consensus 56 L~~L~l~~c~~l~d~~l~~l~~~~~ 80 (864)
|++|.|.+...-.+..+..+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4555555544333334555554444
No 359
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.04 E-value=80 Score=32.77 Aligned_cols=138 Identities=20% Similarity=0.101 Sum_probs=82.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHH
Q 048757 531 ALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIA 610 (864)
Q Consensus 531 ~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~ 610 (864)
++...+..|.+.+.+....+...|..|+.... .......-+.++.+++++.+....|-..|+.++..+...-.. .
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~---e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~--~ 163 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHP---ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN--S 163 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH--H
Confidence 34455666667777777777777777765422 122222334445555555457888899999999887765211 1
Q ss_pred hhhcCCHHHHHHH-Hcc---CCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048757 611 IGREGGVAPLIAL-ARS---AVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALA 682 (864)
Q Consensus 611 i~~~~~i~~Lv~l-L~~---~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~ 682 (864)
+.+ ....++.. |.. .+.-|++.|-.+|..|..+..-+ -+++.|+-.++..+ +.++..++....
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~------~~L~~L~~~~~~~n-~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ------KLLRKLIPILQHSN-PRVRAKAALCFS 230 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH------HHHHHHHHHHhhhc-hhhhhhhhcccc
Confidence 122 33444433 333 23458889999999998654432 34566777777765 667766665443
No 360
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=49.14 E-value=1.5e+02 Score=25.28 Aligned_cols=68 Identities=19% Similarity=0.132 Sum_probs=53.5
Q ss_pred ccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHH
Q 048757 528 ETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGAL 598 (864)
Q Consensus 528 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL 598 (864)
....+..|++.+..+.......+...+..+..++.....+.+-|+++-|.++-.. -++..+...-+++
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~---~~~~~~~~id~il 95 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPN---VEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhc---CCHHHHHHHHHHH
Confidence 4466778888888887778899999999999999999999999988887776654 6666666555554
No 361
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=48.92 E-value=7.7 Score=22.51 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=6.3
Q ss_pred CcCEEEEeCC
Q 048757 157 SVRYLSIAGT 166 (864)
Q Consensus 157 ~L~~L~l~~c 166 (864)
+|++|++++|
T Consensus 1 ~L~~Ldls~n 10 (22)
T PF00560_consen 1 NLEYLDLSGN 10 (22)
T ss_dssp TESEEEETSS
T ss_pred CccEEECCCC
Confidence 3666666666
No 362
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=48.86 E-value=1.1e+02 Score=35.44 Aligned_cols=108 Identities=12% Similarity=-0.062 Sum_probs=74.8
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh------cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC--
Q 048757 573 VEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR------EGGVAPLIALARSAVVDVHETAAGALWNLAF-- 644 (864)
Q Consensus 573 i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~------~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-- 644 (864)
+..++++|.+ .+-.+|-..+.+.+|+..+......+.+ ...+..|..-+.+..|.+|..|...+..++.
T Consensus 301 ~~~~~~LLds---es~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~ 377 (1128)
T COG5098 301 YEHFDELLDS---ESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN 377 (1128)
T ss_pred HHHHHHHhcc---cchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc
Confidence 5778888886 8888999999999998754221112222 1234445555668889999999999988876
Q ss_pred --CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 645 --NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 645 --~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
.+..+..++ ...++-+++.. ..||.+|...+..+-..+|
T Consensus 378 sk~~~~r~ev~-----~lv~r~lqDrs-s~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 378 SKTVGRRHEVI-----RLVGRRLQDRS-SVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred ccccchHHHHH-----HHHHHHhhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 334444444 35566777663 7899999988887776666
No 363
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=48.70 E-value=6.5e+02 Score=33.02 Aligned_cols=114 Identities=15% Similarity=-0.002 Sum_probs=61.4
Q ss_pred CCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHH-----hh-----hcCCHHHHHHH----HccCCHHHHHHH
Q 048757 570 AGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIA-----IG-----REGGVAPLIAL----ARSAVVDVHETA 635 (864)
Q Consensus 570 ~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~-----i~-----~~~~i~~Lv~l----L~~~~~~v~~~a 635 (864)
+..++.++-++-. +.+..-+..+-.++.+-......... +. -...++.++.+ +++.++.++.-+
T Consensus 378 hkv~Dl~lLlil~--s~~~~~~k~ie~ilkkKI~~g~it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG 455 (1426)
T PF14631_consen 378 HKVIDLWLLLILY--SINEDNRKSIEKILKKKIKSGHITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFG 455 (1426)
T ss_dssp --THHHHHHHHHH--HH-HHHHHHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred cchHHHHHHHHHH--cCCccchHHHHHHHHHHHHhCcccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4567766666443 13444456666666665544322221 11 13455566654 467888888877
Q ss_pred HHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 636 AGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 636 ~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
......+-..-+ ...+..++..|+..+.++++..+ ..|...|..++..++
T Consensus 456 ~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev-~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 456 SHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEV-DAALDVLCELAEKNP 505 (1426)
T ss_dssp HHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHH-H
T ss_pred HHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHhccH
Confidence 777766644222 12334466788888877654444 456777877776554
No 364
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=48.35 E-value=1.2e+02 Score=31.57 Aligned_cols=73 Identities=15% Similarity=0.115 Sum_probs=50.7
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhH--HHHHHCCChHHHHHHHHhcC---------CCCHHHHHHHHHHH
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNR--EAIAAAGGVEALVALVRSCS---------SSSQGLQERAAGAL 598 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~--~~i~~~~~i~~Lv~lL~~~~---------~~~~~v~~~A~~aL 598 (864)
-.+|.++.++++.+++++..++.+|..+....... ..+.+.|..+.+-+.+..+- ..+..+-..|..+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 35789999999999999999999999997753322 23556666555555444321 24566777777787
Q ss_pred HHhc
Q 048757 599 WGLS 602 (864)
Q Consensus 599 ~~L~ 602 (864)
..|.
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 365
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=46.78 E-value=37 Score=31.12 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=56.2
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHH---HHHHHHHHHHH
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEG---LQSEVAKAIAN 384 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~---~~~~a~~~L~~ 384 (864)
..+..|.+-|++.++.++..|...|..+....... ....+.....+..|..++.+ .... |+..+...+..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~------f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPR------FHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHH------HHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 44678888999999999999999999988665422 44667777888899998864 3333 89899888887
Q ss_pred HhC
Q 048757 385 LSV 387 (864)
Q Consensus 385 L~~ 387 (864)
.+.
T Consensus 116 W~~ 118 (140)
T PF00790_consen 116 WAE 118 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 366
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=46.22 E-value=1.6e+02 Score=32.00 Aligned_cols=148 Identities=14% Similarity=0.029 Sum_probs=81.5
Q ss_pred ccChHHHHHHHhcCCC-HHHHHHHHHHHHHhcCChh-hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc
Q 048757 528 ETGALEALVQLTFSKH-EGVRQEAAGALWNLSFDDR-NREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE 605 (864)
Q Consensus 528 ~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~Ls~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~ 605 (864)
+..-.+.+-+-++..+ ..-|.+|+..+..|+..-+ .-..++. +.+..++.-.....+.++.-+..|...++.++...
T Consensus 208 EddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~ 286 (370)
T PF08506_consen 208 EDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKG 286 (370)
T ss_dssp HHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS
T ss_pred ccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhh
Confidence 3344444544454333 3367788888888875421 1111111 12333333222223467888899999999988643
Q ss_pred hh-------------hHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHH
Q 048757 606 AN-------------SIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKM 672 (864)
Q Consensus 606 ~~-------------~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~ 672 (864)
.. -..+.....+|-|. --.+..|-++..|++.+..+...- .+..+. +.+|.++..|.+++ ..
T Consensus 287 ~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l-~~~~l~--~~~~~l~~~L~~~~-~v 361 (370)
T PF08506_consen 287 STTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQL-PKEQLL--QIFPLLVNHLQSSS-YV 361 (370)
T ss_dssp --BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--HHHHH--HHHHHHHHHTTSS--HH
T ss_pred ccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhC-CHHHHH--HHHHHHHHHhCCCC-cc
Confidence 21 12222333334333 111345778888999888887532 122222 58899999999886 88
Q ss_pred HHHHHHHHH
Q 048757 673 ARFMAALAL 681 (864)
Q Consensus 673 ~r~~aa~aL 681 (864)
|+..||.++
T Consensus 362 v~tyAA~~i 370 (370)
T PF08506_consen 362 VHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhC
Confidence 999999875
No 367
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=45.41 E-value=1.7e+02 Score=31.45 Aligned_cols=102 Identities=12% Similarity=-0.071 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc-------CCCCHHHHHHHHHHHHHhcCCCcchHHHHhcC
Q 048757 412 NRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW-------SSWNDGVLERAAGALANLAADDKCSLEVARAG 484 (864)
Q Consensus 412 ~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~ 484 (864)
+-......++....|..++...-...-+-.+|.++.++-.. ...+-.+|+.|+.++..++..-.....-....
T Consensus 230 nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~r 309 (343)
T cd08050 230 NLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPR 309 (343)
T ss_pred cHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHH
Confidence 45666777788888888776655554444778887766321 12345789999999999986432111112333
Q ss_pred cHHHHHHHHHccCch-hHHHHHHHHHHHHh
Q 048757 485 GVHALVMLARSFMFE-GVQEQAARALANLV 513 (864)
Q Consensus 485 ~i~~Lv~ll~~~~~~-~v~~~a~~aL~~L~ 513 (864)
....+.+.+.++..+ ....-|+..|..++
T Consensus 310 i~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 310 ITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 344566666554322 22555666665554
No 368
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.79 E-value=6.7e+02 Score=30.70 Aligned_cols=315 Identities=14% Similarity=0.120 Sum_probs=159.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCch
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
+.+.-.++++---+|.+|+++++.++..+-.. ...-..++....+.|. +.+-.|+..|+-+|..+-.+.+
T Consensus 465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d---------~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKD---------PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HHhhHhhcCchhHHHHHHHHHHHHHHhccCCC---------hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 33444446666678999999999998555332 1222455666677776 7778899999999999776543
Q ss_pred hH-HHHHh--cCcHHHHHHHHccCCHHHHHHHHHH-HHHhcCC-CCcHHHHHhhCcHHHHHHHHcc---cCCCCHHHHHH
Q 048757 391 VA-KAVSE--NGGIDILADLARSTNRLVAEEVVGG-LWNLSVG-EDHKGAIARAGGIKALVDLIFK---WSSWNDGVLER 462 (864)
Q Consensus 391 ~~-~~i~~--~g~i~~Lv~lL~~~~~~v~~~a~~a-L~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~---~~~~~~~v~~~ 462 (864)
.. ..+.. .+.++.|+.+.+..+-+....+... ....+.. ......+++. ......+++.. ..+++++-...
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~-La~~F~k~l~~~~~~~~~~ddk~ia 614 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQN-LAETFLKVLQTSEDEDESDDDKAIA 614 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHH-HHHHHHHHHhccCCCCccchHHHHH
Confidence 22 22211 1234455555554333322222222 1222210 0111111111 33445555542 12233344456
Q ss_pred HHHHHHHhcCC---CcchHHHH---hcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHH
Q 048757 463 AAGALANLAAD---DKCSLEVA---RAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALV 536 (864)
Q Consensus 463 a~~~L~~L~~~---~~~~~~i~---~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~ 536 (864)
|.++|..+..- -+....+. +.-..+.+-..+++ +-.++-+.+......++.. .++..-.+. +..+.+.
T Consensus 615 A~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~-~i~dfyeE~~ei~~~~t~~---~~~Isp~mW--~ll~li~ 688 (1010)
T KOG1991|consen 615 ASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKN-DITDFYEELLEIVSSLTFL---SKEISPIMW--GLLELIL 688 (1010)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhhhhh---hcccCHHHH--HHHHHHH
Confidence 66666665431 12222221 23345555556665 3466666677777666653 222222222 4566677
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHH-CCChHHHHHHHHhc---CCCCHHHHHHHHHHHHHhccCchhhHHhh
Q 048757 537 QLTFSKHEGVRQEAAGALWNLSFDDRNREAIAA-AGGVEALVALVRSC---SSSSQGLQERAAGALWGLSLSEANSIAIG 612 (864)
Q Consensus 537 ~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~-~~~i~~Lv~lL~~~---~~~~~~v~~~A~~aL~~L~~~~~~~~~i~ 612 (864)
+.+.....+--....-+|.|....... .+.. ......+..+.+.+ .+....-.+.|+..+-.+. .
T Consensus 689 e~~~~~~~dyf~d~~~~l~N~vt~g~~--~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ii---------L 757 (1010)
T KOG1991|consen 689 EVFQDDGIDYFTDMMPALHNYVTYGTP--SLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVII---------L 757 (1010)
T ss_pred HHHhhhhHHHHHHHHHHHhhheeeCch--hhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH---------H
Confidence 777777777788888888887554322 1111 22233444333321 2234444556777766532 2
Q ss_pred hcCC-----HHHHHHHH----cc--CCHHHHHHHHHHHHHhcC-CcccHHHHH
Q 048757 613 REGG-----VAPLIALA----RS--AVVDVHETAAGALWNLAF-NPGNALCIV 653 (864)
Q Consensus 613 ~~~~-----i~~Lv~lL----~~--~~~~v~~~a~~aL~~L~~-~~~~~~~i~ 653 (864)
..++ +|+.+++. .. ++...+..+.....|... +|..--.+.
T Consensus 758 ~~kg~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iL 810 (1010)
T KOG1991|consen 758 NCKGLLDQYIPLFLELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGIL 810 (1010)
T ss_pred HhcCcHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 2222 55555443 22 445566666666555544 554443333
No 369
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.64 E-value=2.2e+02 Score=29.72 Aligned_cols=144 Identities=10% Similarity=0.077 Sum_probs=76.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceeee
Q 048757 617 VAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIASI 695 (864)
Q Consensus 617 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~~ 695 (864)
+...+..|.+.+-+....++..+..|+. +++....... ..+..+++-+++.. ..+-..|+.+++.++..-.+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlR-S~VsraA~~t~~difs~ln~~---- 163 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLR-SAVSRAACMTLADIFSSLNNS---- 163 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHH----
Confidence 3344556666666677777777777766 3333222222 34456666666665 345555666666554332211
Q ss_pred cccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChh--hHHHHhhccchhHHhccccccCcccccccc
Q 048757 696 GSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQ--AFATALASAVPKSLAQITEGARIPEAAHLR 773 (864)
Q Consensus 696 ~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~--~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~ 773 (864)
... . + .+ -+..|+...+..+ +++.|. .|+.++.+-+.+
T Consensus 164 ----------i~~-~-----l-------d~-----lv~~Ll~ka~~dnrFvreda~--kAL~aMV~~vtp---------- 203 (334)
T KOG2933|consen 164 ----------IDQ-E-----L-------DD-----LVTQLLHKASQDNRFVREDAE--KALVAMVNHVTP---------- 203 (334)
T ss_pred ----------HHH-H-----H-------HH-----HHHHHHhhhcccchHHHHHHH--HHHHHHHhccCh----------
Confidence 000 0 0 00 1222222223332 333333 455555543333
Q ss_pred cchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 048757 774 CSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPG 808 (864)
Q Consensus 774 ~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~ 808 (864)
+...+.|+..+++.++.++..++.+.-++.+..
T Consensus 204 --~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl 236 (334)
T KOG2933|consen 204 --QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRL 236 (334)
T ss_pred --HHHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence 226689999999999999999998875555443
No 370
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=42.20 E-value=1.6e+02 Score=34.08 Aligned_cols=108 Identities=14% Similarity=0.015 Sum_probs=72.4
Q ss_pred HHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHh------cCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 442 IKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVAR------AGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 442 i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~------~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
...++++|. +.+-.+|.....+++|+..+-....++.+ ...+..|++-+.+ ..|.+|..|+..+..++.-
T Consensus 301 ~~~~~~LLd---ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D-~~py~RtKalqv~~kifdl 376 (1128)
T COG5098 301 YEHFDELLD---SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSD-TYPYTRTKALQVLEKIFDL 376 (1128)
T ss_pred HHHHHHHhc---ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHhC
Confidence 355777785 46778888888888888754322222221 1234455555666 5799999999999999875
Q ss_pred CCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 048757 516 GDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLS 558 (864)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls 558 (864)
+...+..| ..++...++-+.+...-||+.|...+..|-
T Consensus 377 ~sk~~~~r-----~ev~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 377 NSKTVGRR-----HEVIRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred cccccchH-----HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 43222222 345566778888999999999999888763
No 371
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=41.76 E-value=1.4e+02 Score=27.28 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=56.4
Q ss_pred hcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHH-HHHHhcC---CCHHHHHHHHHHHH
Q 048757 309 QGATLLLSLMES-SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRL-LLDLARS---PPEGLQSEVAKAIA 383 (864)
Q Consensus 309 ~gv~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~-L~~lL~~---~~~~~~~~a~~~L~ 383 (864)
.++..|-+-|++ .++.++..|...|..+....... ....|...+.+.. |+.++.. .+..|+..++..+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~------fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~ 111 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHR------FHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQ 111 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHH------HHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHH
Confidence 446777787774 68999999999999988766532 3467888899987 8999863 34589999999988
Q ss_pred HHhC
Q 048757 384 NLSV 387 (864)
Q Consensus 384 ~L~~ 387 (864)
..+.
T Consensus 112 ~W~~ 115 (141)
T cd03565 112 AWAD 115 (141)
T ss_pred HHHH
Confidence 8664
No 372
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=41.24 E-value=68 Score=35.92 Aligned_cols=227 Identities=15% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCC--hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhh-hcCCHHHHH
Q 048757 545 GVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIG-REGGVAPLI 621 (864)
Q Consensus 545 ~v~~~a~~~L~~Ls~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~-~~~~i~~Lv 621 (864)
..|..|+++|+.+... .+....+.+. .|+..|.+ .+..-|..|+.++..++.....+..-. -....+.|.
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~----~L~~~L~S---~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~ 174 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQP----LLLPYLNS---PSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLL 174 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHHhcc---hhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHH
Q ss_pred HHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCc-----HHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceeee
Q 048757 622 ALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGG-----VQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIASI 695 (864)
Q Consensus 622 ~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~-----v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~~ 695 (864)
..|.++.+..-......+..+-. -...-..+.+.|. +|.|-..........-......--..+.....+....-
T Consensus 175 ~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~ 254 (441)
T PF12054_consen 175 EILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKS 254 (441)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHh
Q ss_pred cccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChhhHHHHhhccchhHHhccc---cccCccccccc
Q 048757 696 GSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQAFATALASAVPKSLAQIT---EGARIPEAAHL 772 (864)
Q Consensus 696 ~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~~~~~a~~~~a~~~l~~~~---~~~~~~~~~~~ 772 (864)
...-......-.+..+++..+.. +...-.....-..+..+..+.|+++++.++ .+
T Consensus 255 l~~~~k~~a~~~Le~~r~~l~~a-------------i~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~KLnP--------- 312 (441)
T PF12054_consen 255 LSPSQKLSALQALEDRRQRLQAA-------------IEEAKEVQTSRDVRVLAAAASALVALGGLPKKLNP--------- 312 (441)
T ss_pred cCCcccchHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccH---------
Q ss_pred ccchhhHHHHHHHhc-CCcHHHHHHHHHHHHhhc
Q 048757 773 RCSGAEIGRFVSMLR-NPSSILKACAAVALLQFT 805 (864)
Q Consensus 773 ~~~~~~i~~lv~~l~-~~~~~~~~~Aa~al~~~~ 805 (864)
.|++|++-++ ..++.+|..+|.+|..|+
T Consensus 313 -----iIrpLMdSIK~Een~~LQ~rsA~slA~Li 341 (441)
T PF12054_consen 313 -----IIRPLMDSIKREENELLQQRSAESLARLI 341 (441)
T ss_pred -----HHHHHHHHhhccccHHHHHHHHHHHHHHH
No 373
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=41.18 E-value=66 Score=31.18 Aligned_cols=65 Identities=23% Similarity=0.088 Sum_probs=53.7
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcC----CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 616 GVAPLIALARSAVVDVHETAAGALWNLAF----NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 616 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~----~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
.++.++++..+++..++..|+..+.-... +|. ..+|.|+.|..+++ +.+|..|...+..+.+..+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhH
Confidence 46778888889999999999999988764 333 36899999999986 8899999999988877665
No 374
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=41.00 E-value=4.6e+02 Score=29.78 Aligned_cols=145 Identities=10% Similarity=-0.020 Sum_probs=81.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHc--------cCCHHHHHHHHHHHHHhcCCCCc
Q 048757 361 RLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLAR--------STNRLVAEEVVGGLWNLSVGEDH 432 (864)
Q Consensus 361 ~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~--------~~~~~v~~~a~~aL~~Ls~~~~~ 432 (864)
..+.+.+-+.++..+..|+..|.. |+.... -+|.++.++. ..+-....+.++..+.|..++..
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---DsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---DSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---CccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 334455555777777777766665 211000 1344444442 24566777788888888888765
Q ss_pred HHHHHhhCcHHHHHHHHcc-------cCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc-CchhHHHH
Q 048757 433 KGAIARAGGIKALVDLIFK-------WSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSF-MFEGVQEQ 504 (864)
Q Consensus 433 ~~~i~~~g~i~~L~~lL~~-------~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~-~~~~v~~~ 504 (864)
.-.-.-+-.+|.++.++-. ..+..-.+|..|+..+..++.+-...-.-.....+..+.+.+.+. .......-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 5444444467777666532 112344678888888888876543222223444556666666553 23344555
Q ss_pred HHHHHHHHhh
Q 048757 505 AARALANLVA 514 (864)
Q Consensus 505 a~~aL~~L~~ 514 (864)
++..|..|..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 5555555553
No 375
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=40.38 E-value=1.4e+02 Score=27.36 Aligned_cols=72 Identities=21% Similarity=0.129 Sum_probs=55.7
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh--hhHHHHHHCCChHHHHHHHHhcCCCCHH---HHHHHHHHHHHhcc
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVALVRSCSSSSQG---LQERAAGALWGLSL 603 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~~~~---v~~~A~~aL~~L~~ 603 (864)
.++..|..-|.+.++.++..|+.+|-.+..+. .....+.+...+..|..++.+ ..... |+..+...+..++.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~--~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKS--KKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHH--TTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHcc--CCCCchhHHHHHHHHHHHHHHH
Confidence 45667777788899999999999998887763 456667677788999998886 23333 89999988887653
No 376
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=39.49 E-value=11 Score=32.21 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=23.0
Q ss_pred hHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 048757 778 EIGRFVSMLRNPSSILKACAAVALLQFT 805 (864)
Q Consensus 778 ~i~~lv~~l~~~~~~~~~~Aa~al~~~~ 805 (864)
+-..|..+|+++++.+|.+||..++.+.
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred hHHHHHHHHcCCChhHHHHHHHHHHHhC
Confidence 4477999999999999999999887764
No 377
>PLN03205 ATR interacting protein; Provisional
Probab=39.48 E-value=4.8e+02 Score=28.17 Aligned_cols=228 Identities=15% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcC---CCCcHHHHHhhCcHHHHHHHHcc--cCCCCHHHHHHHHHHHHHhcCCCc
Q 048757 401 IDILADLARSTNRLVAEEVVGGLWNLSV---GEDHKGAIARAGGIKALVDLIFK--WSSWNDGVLERAAGALANLAADDK 475 (864)
Q Consensus 401 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~---~~~~~~~i~~~g~i~~L~~lL~~--~~~~~~~v~~~a~~~L~~L~~~~~ 475 (864)
+++|+++..-++..+...+++.|..+-. +++.+-.-.-.----.|.+++.+ .....+.|+..|..+..-+.....
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Q ss_pred ---chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHH
Q 048757 476 ---CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAG 552 (864)
Q Consensus 476 ---~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 552 (864)
.++.++....+..+.++|+.+..--+|..++-.|.-|-.. |.|+..+.+.+.+-
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNC-----------------pklL~iFcSg~~e~------ 461 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNC-----------------PKLYDRFDSLHEEK------ 461 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcC-----------------cHHHHHHhcCCccc------
Q ss_pred HHHHhcCChhhHH-HHHHCCChHHHHHHHHhc------CCCCHHHHHHHHHHHHHhccCch-------hhHHhhhcCCHH
Q 048757 553 ALWNLSFDDRNRE-AIAAAGGVEALVALVRSC------SSSSQGLQERAAGALWGLSLSEA-------NSIAIGREGGVA 618 (864)
Q Consensus 553 ~L~~Ls~~~~~~~-~i~~~~~i~~Lv~lL~~~------~~~~~~v~~~A~~aL~~L~~~~~-------~~~~i~~~~~i~ 618 (864)
+.+....+.. -.....++..+.+-|.+| +..+-+++..+...|+-++.+.. +....++.+.+.
T Consensus 462 ---~~ad~eNd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv~hkl~~~~NFLm 538 (652)
T PLN03205 462 ---NSSDTENDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLSNHKLPQDSNFLM 538 (652)
T ss_pred ---cccccccccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeeecccCCCCccHHH
Q ss_pred HHHHHHcc-----------------CCHHHHHHHHHHHHHhcCCcccHHHHHh
Q 048757 619 PLIALARS-----------------AVVDVHETAAGALWNLAFNPGNALCIVE 654 (864)
Q Consensus 619 ~Lv~lL~~-----------------~~~~v~~~a~~aL~~L~~~~~~~~~i~~ 654 (864)
.++++|-+ ...-+.+.|.-.|.+|..++.....+.+
T Consensus 539 LILqvLvSemd~e~s~~~~~~e~~KaRtLLmREaLILLNRLvSn~~ySa~vL~ 591 (652)
T PLN03205 539 LILHLLVAEIDSESTEFHPKAEIFKARTLLMREILILLNRLVSGLSSSATILK 591 (652)
T ss_pred HHHHHHHHHhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHH
No 378
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=39.02 E-value=1.8e+02 Score=26.40 Aligned_cols=108 Identities=13% Similarity=0.112 Sum_probs=57.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCc--ccccchHhHHH----HHH--hCCHHHHHHHhcCCC----HHHHHHHH
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQ--NAMVDCQRAEA----ILR--HGGVRLLLDLARSPP----EGLQSEVA 379 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~~----i~~--~~~i~~L~~lL~~~~----~~~~~~a~ 379 (864)
+.+++.+++ ++........+|..+...-.+ .......++.. +.. ...++.+.+.+.... .++...++
T Consensus 29 ~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L 107 (148)
T PF08389_consen 29 EDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQSSSEANEELVKAAL 107 (148)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHH
T ss_pred HHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 566666665 344445555555554432211 11111222222 221 223444444454322 78888999
Q ss_pred HHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHH
Q 048757 380 KAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGL 423 (864)
Q Consensus 380 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL 423 (864)
+++.....--+. ..+.+..-++.+.+++.+ +.++..|+.+|
T Consensus 108 ~~l~s~i~~~~~-~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 108 KCLKSWISWIPI-ELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHTTTS-H-HHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHhCCH-HHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 999997773332 334556678888888843 34467777654
No 379
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=38.71 E-value=2.7e+02 Score=31.92 Aligned_cols=172 Identities=19% Similarity=0.064 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHH--c--------cCchhHHHHHHHHHHHHhhcCCCCcccc
Q 048757 454 SWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLAR--S--------FMFEGVQEQAARALANLVAHGDSNSNNA 523 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~--~--------~~~~~v~~~a~~aL~~L~~~~~~~~~~~ 523 (864)
+.+.+|...|-..|..+..+-+ +...|..|+.+.. . +-++.+|...+..|..=...
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~A-------- 313 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIA-------- 313 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHH--------
Confidence 3445666666666666655422 2334666776666 2 12345555554444432111
Q ss_pred hhhhccChHHHHHHHhcCC--CHHHHHHHHHHH---HHhcCC-hhh-----HHHHHHCCChHHHHHHHH--hcCCCCHHH
Q 048757 524 AVGLETGALEALVQLTFSK--HEGVRQEAAGAL---WNLSFD-DRN-----REAIAAAGGVEALVALVR--SCSSSSQGL 590 (864)
Q Consensus 524 ~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L---~~Ls~~-~~~-----~~~i~~~~~i~~Lv~lL~--~~~~~~~~v 590 (864)
.-.-...++....-+.+. +..++..++..+ .....+ +.. +..| ..++.+.+ +.-. .....+...
T Consensus 314 -a~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i-~~~g~p~~-~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 314 -ATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVI-LSQGWPLI-QDSSSQSNSSEDIEL 390 (501)
T ss_pred -HhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHH-HhcCcccc-ccccccCCCcccHHH
Confidence 001123344444456665 667777777777 433332 221 2222 22333333 1000 112357889
Q ss_pred HHHHHHHHHHhccCchhhHHh-hhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 591 QERAAGALWGLSLSEANSIAI-GREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 591 ~~~A~~aL~~L~~~~~~~~~i-~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
|..+..+|+.|+...+. .+ .+-+.++.|.+-|.+++++++...-.||..|+.
T Consensus 391 R~~aYe~lG~L~~~~p~--l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPS--LFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHHHccCcc--cccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 99999999999976332 12 345677888888888899999999999999875
No 380
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=38.51 E-value=12 Score=33.85 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=37.5
Q ss_pred CcCeeeecccCCC-cHHHHHHHHhcCCCccEEeccCCC--CCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCc
Q 048757 109 KLRRLWLSGVREV-NGDAINALAKQCRQLVEVGFIDSG--GVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLV 185 (864)
Q Consensus 109 ~L~~L~l~~~~~l-~~~~l~~l~~~~~~L~~L~l~~c~--~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~ 185 (864)
.+..++++.|.-. -.+.+..+.. -.+|...+|+++. .+...-....+.++.|+++.. .+.|...+ + ...|.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~-~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE-~-Aam~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSK-GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEE-L-AAMPALR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhC-CceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHH-H-hhhHHhh
Confidence 3556667777532 1233333333 4556666666632 111122224455666666542 33333322 2 2356666
Q ss_pred EEecCC
Q 048757 186 GLDTSR 191 (864)
Q Consensus 186 ~L~l~~ 191 (864)
.|++++
T Consensus 104 ~lNl~~ 109 (177)
T KOG4579|consen 104 SLNLRF 109 (177)
T ss_pred hccccc
Confidence 666665
No 381
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=37.79 E-value=79 Score=27.80 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=31.8
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHH
Q 048757 616 GVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIV 653 (864)
Q Consensus 616 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~ 653 (864)
+++.|++-|.+++++|...|..+|...+.++...+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHH
Confidence 57889999999999999999999999998765544444
No 382
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.44 E-value=2.7e+02 Score=35.25 Aligned_cols=179 Identities=15% Similarity=0.037 Sum_probs=82.0
Q ss_pred cHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc---C---chhHHHHHHHHHHHHhh
Q 048757 441 GIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSF---M---FEGVQEQAARALANLVA 514 (864)
Q Consensus 441 ~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~---~---~~~v~~~a~~aL~~L~~ 514 (864)
.+.+...+.. +.....+++.....++.++-...... +. .| -+...+++++- . ...+-..+-.+|+-++.
T Consensus 841 ~~l~sl~v~~-~s~~~~evr~~sl~~l~silet~ge~--ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIss 915 (1610)
T KOG1848|consen 841 MLLPSLEVSD-NSSRGVEVRISSLEALVSILETVGEH--LL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISS 915 (1610)
T ss_pred HHHHHHHHHH-hcCccceeeHHHHHHHHHHHhccchh--hc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhh
Confidence 3333434333 24556677777778887775543211 11 11 33334444321 1 22334445556666654
Q ss_pred cCCCCcccchhhhccChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCChhh-HHHHHHCCChHHHHHHHHhcCCCCHHHHH
Q 048757 515 HGDSNSNNAAVGLETGALEALVQLTF-SKHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVALVRSCSSSSQGLQE 592 (864)
Q Consensus 515 ~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~~~~-~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~ 592 (864)
+.= ..-..-.=.+.++.+..+.+ ..|..+.-.|.+.+|+++..-.. +....+.+.-...++.+.+ +.+..++-.
T Consensus 916 DfL---qSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s-s~~~~~~l~ 991 (1610)
T KOG1848|consen 916 DFL---QSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS-SMKSKEILP 991 (1610)
T ss_pred cch---hcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc-cccchhhhh
Confidence 210 00000011244555555533 35777888999999998654333 2222222222333444443 234455555
Q ss_pred HHHHHHH--HhccCchhhHHhhhcCCHHHHHHHHccCC
Q 048757 593 RAAGALW--GLSLSEANSIAIGREGGVAPLIALARSAV 628 (864)
Q Consensus 593 ~A~~aL~--~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~ 628 (864)
.++|++. +|+..-+....-++.|+++.+.+.+.+..
T Consensus 992 e~lwi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg 1029 (1610)
T KOG1848|consen 992 EVLWIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHG 1029 (1610)
T ss_pred hHHHHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhc
Confidence 6666542 11111111112344556666666665443
No 383
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=37.39 E-value=42 Score=28.90 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHH
Q 048757 376 SEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVA 416 (864)
Q Consensus 376 ~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 416 (864)
......+..|+..|+.-..+++.|+++.|+.+|.+.|.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 35677888899999999999999999999999998887654
No 384
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=37.22 E-value=4.4e+02 Score=27.44 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=45.8
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhH--HHHHhcCcHHHHHH----HHc--------cCCHHHHHHHHHHH
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVA--KAVSENGGIDILAD----LAR--------STNRLVAEEVVGGL 423 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~g~i~~Lv~----lL~--------~~~~~v~~~a~~aL 423 (864)
-.+|+++.++++.++.++..++.+|..+...-... ..+.+.|-.+.+-+ .+. ++...+...+-.+|
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 36899999999999999999999999988743222 23445554443333 332 23445666666666
Q ss_pred HHh
Q 048757 424 WNL 426 (864)
Q Consensus 424 ~~L 426 (864)
..|
T Consensus 199 ~~L 201 (282)
T PF10521_consen 199 LSL 201 (282)
T ss_pred HHH
Confidence 666
No 385
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.99 E-value=31 Score=31.58 Aligned_cols=29 Identities=41% Similarity=0.448 Sum_probs=19.3
Q ss_pred CHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 616 GVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 616 ~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
-+++|+.+|.+.++.+...|+.+|.+-..
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 46788888888888888888888887643
No 386
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=36.98 E-value=1.7e+02 Score=35.30 Aligned_cols=127 Identities=13% Similarity=0.044 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHH
Q 048757 457 DGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALV 536 (864)
Q Consensus 457 ~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~ 536 (864)
+.++..+.-+|+++|-.++- .....+|.|++-|.-.+...+|-+.+-++..+|.+. ..+ -...+|.+.
T Consensus 945 ~~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-------Tam-~d~YiP~I~ 1012 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-------TAM-TDRYIPMIA 1012 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-------HHH-HHHhhHHHH
Confidence 35666777788888765441 112357888888887777778888888888888631 112 235678888
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHH-CC--ChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 048757 537 QLTFSKHEGVRQEAAGALWNLSFDDRNREAIAA-AG--GVEALVALVRSCSSSSQGLQERAAGALWGLSLS 604 (864)
Q Consensus 537 ~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~-~~--~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~ 604 (864)
.-|.++++-+|..+.-.|.+|-..+ ++. .| .+.-++.++. .+++++..|-..++.+-..
T Consensus 1013 ~~L~Dp~~iVRrqt~ilL~rLLq~~-----~vKw~G~Lf~Rf~l~l~D----~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1013 ASLCDPSVIVRRQTIILLARLLQFG-----IVKWNGELFIRFMLALLD----ANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHhcCchHHHHHHHHHHHHHHHhhh-----hhhcchhhHHHHHHHHcc----cCHHHHHHHHHHHHHHHhh
Confidence 8899999999999999999984433 222 12 2344444554 6899999999988876544
No 387
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=36.83 E-value=19 Score=32.02 Aligned_cols=10 Identities=20% Similarity=0.471 Sum_probs=4.0
Q ss_pred HHhcCCCccE
Q 048757 129 LAKQCRQLVE 138 (864)
Q Consensus 129 l~~~~~~L~~ 138 (864)
+..+|+.|..
T Consensus 56 mF~~~~~l~~ 65 (120)
T PF03382_consen 56 MFAGCSSLNQ 65 (120)
T ss_pred HHhhhhhcCC
Confidence 3333444444
No 388
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=35.78 E-value=1.3e+02 Score=36.30 Aligned_cols=129 Identities=15% Similarity=0.103 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHH
Q 048757 544 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIAL 623 (864)
Q Consensus 544 ~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~l 623 (864)
+.++..+.-+|++++-..+. .....+|.|++-|.- +....+|-+.+-+++.+|.+- .+.-...+|.+...
T Consensus 945 ~~vra~~vvTlakmcLah~~----LaKr~~P~lvkeLe~--~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~ 1014 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDR----LAKRLMPMLVKELEY--NTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAAS 1014 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHh--hhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHH
Confidence 44677777788877654322 122468889988886 466777777777777776542 12334578999999
Q ss_pred HccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCc---HHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 624 ARSAVVDVHETAAGALWNLAFNPGNALCIVEGGG---VQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 624 L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~---v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
|.++++-||+++.-.|.+|.. ..+++..| +..+..++.. ++.+|..|-..++.+-....
T Consensus 1015 L~Dp~~iVRrqt~ilL~rLLq-----~~~vKw~G~Lf~Rf~l~l~D~--~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1015 LCDPSVIVRRQTIILLARLLQ-----FGIVKWNGELFIRFMLALLDA--NEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred hcCchHHHHHHHHHHHHHHHh-----hhhhhcchhhHHHHHHHHccc--CHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999974 23333333 3344455533 26777777766665554443
No 389
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=34.99 E-value=3.6e+02 Score=24.70 Aligned_cols=74 Identities=16% Similarity=0.056 Sum_probs=55.4
Q ss_pred ChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCh--hhHHHHHHCCChHH-HHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 048757 530 GALEALVQLTF-SKHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEA-LVALVRSCSSSSQGLQERAAGALWGLSL 603 (864)
Q Consensus 530 ~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~~--~~~~~i~~~~~i~~-Lv~lL~~~~~~~~~v~~~A~~aL~~L~~ 603 (864)
.++..|-+-+. +.++.++..|+.+|-.+..+. .....+....++.. |++++......+..|+...+..+..++.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 35566666565 468888888999988888773 45777888889987 9999974223456899999999988774
No 390
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.60 E-value=8.5e+02 Score=31.24 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=20.7
Q ss_pred CcHHHHHHHHHccCchhHHHHHHHHHHHHhh
Q 048757 484 GGVHALVMLARSFMFEGVQEQAARALANLVA 514 (864)
Q Consensus 484 ~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~ 514 (864)
+.|+.++..-+..++-.+...|++-++.++.
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 3456666666665666777777777777764
No 391
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=34.08 E-value=8.2e+02 Score=28.61 Aligned_cols=329 Identities=16% Similarity=0.075 Sum_probs=159.6
Q ss_pred hhHHHHHhh-cHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHH
Q 048757 301 EFDDFWLRQ-GATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVA 379 (864)
Q Consensus 301 ~~~~~~~~~-gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~ 379 (864)
+....|..+ |+..|=+.+-++++.++.-|.-.++-...+..+. ..-++..|..-+.+++..++..+.
T Consensus 406 G~I~~Wnvd~gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne------------~dpalALLsdyv~~~~s~~ri~aI 473 (878)
T KOG2005|consen 406 GMIQLWNVDKGLEQLDKYLYSDESYIKAGALLGIGISNSGVFNE------------CDPALALLSDYLQSSSSIHRIGAI 473 (878)
T ss_pred chhheecchhhHHHHHHHhhcCCchhhhccceeeeeeccccccc------------cCHHHHHHHHhccCCCceeehHHh
Confidence 334445443 5777888887777777766555544432222111 011233344445566666666665
Q ss_pred HHHHHHhCCchhHHHHHhcCcHHHHHHHHccCC--HHHHHHHHHHHHHhcC---CCCcHHHHHhhCcHHHHHHHHccc--
Q 048757 380 KAIANLSVDSKVAKAVSENGGIDILADLARSTN--RLVAEEVVGGLWNLSV---GEDHKGAIARAGGIKALVDLIFKW-- 452 (864)
Q Consensus 380 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~v~~~a~~aL~~Ls~---~~~~~~~i~~~g~i~~L~~lL~~~-- 452 (864)
--|+-..... .+..+. ..|..++.+.+ .++...|.-+|+.+-. +++....| +-.++++.
T Consensus 474 lGLglayaGs-q~e~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~i--------lqtlmekse~ 539 (878)
T KOG2005|consen 474 LGLGLAYAGS-QREEVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSSI--------LQTLMEKSET 539 (878)
T ss_pred hhhHHhhcCC-chHHHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHHH--------HHHHHHhhhh
Confidence 5555433222 222221 13445555443 4577777777776633 22222222 22233320
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChH
Q 048757 453 SSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGAL 532 (864)
Q Consensus 453 ~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i 532 (864)
..++.-.|.-+.+ |+-+- +.+...+...+.-++.- ...++.. +..|...|.+... .+...+.+
T Consensus 540 El~d~~~RFL~LG-L~llf--------lgkqe~~d~~~e~~~~i-~~~~~~~-~~~lv~~caYaGT--Gnvl~Iq~---- 602 (878)
T KOG2005|consen 540 ELEDQWFRFLALG-LALLF--------LGKQESVDAVVETIKAI-EGPIRKH-ESILVKSCAYAGT--GNVLKIQS---- 602 (878)
T ss_pred hhhchHHHHHHHH-HHHHH--------hcccchHHHHHHHHHHh-hhHHHHH-HHHHHHHhhcccc--CceEEech----
Confidence 0112222322222 22221 12233445555555542 2333333 3334444433211 11111111
Q ss_pred HHHHHHhcCCC---HHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhh
Q 048757 533 EALVQLTFSKH---EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANS 608 (864)
Q Consensus 533 ~~L~~lL~~~~---~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~ 608 (864)
..+..+....+ ..-+..|+--++-++..++.- ..-.+..+-.++.- +++.+|...--|++-++.+ |+.
T Consensus 603 q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig----~eM~lR~f~h~l~y---ge~~iRravPLal~llsvSNPq~- 674 (878)
T KOG2005|consen 603 QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIG----SEMVLRHFGHLLHY---GEPHIRRAVPLALGLLSVSNPQV- 674 (878)
T ss_pred hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhh----hHHHHHHHHHHHHc---CCHHHHHHHHHHHhhhccCCCcc-
Confidence 23333333321 112334554455555554431 11234556667775 8999999999999988876 443
Q ss_pred HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 609 IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 609 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
+++..|-++.++.+.+|..+|+.+++-+.....|.+ +. +.+..|...-..+....--..-|..|..+..|.
T Consensus 675 ------~vlDtLsk~shd~D~eva~naIfamGLiGAGTnNAR-la--~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGt 745 (878)
T KOG2005|consen 675 ------NVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNNAR-LA--QMLRQLASYYYKDSKALFVVRIAQGLVHLGKGT 745 (878)
T ss_pred ------hHHHHHHHhccCcchHHHHHHHHHhccccCCcchHH-HH--HHHHHHHHHHhccchhHHHHHHHHHHHHhcCCc
Confidence 356788899999999999999999998876555441 11 112222222211111222334566677777665
Q ss_pred c
Q 048757 689 M 689 (864)
Q Consensus 689 ~ 689 (864)
.
T Consensus 746 l 746 (878)
T KOG2005|consen 746 L 746 (878)
T ss_pred e
Confidence 4
No 392
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.05 E-value=8.8e+02 Score=28.61 Aligned_cols=186 Identities=12% Similarity=0.044 Sum_probs=109.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhC--Cchh----HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHH
Q 048757 361 RLLLDLARSPPEGLQSEVAKAIANLSV--DSKV----AKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKG 434 (864)
Q Consensus 361 ~~L~~lL~~~~~~~~~~a~~~L~~L~~--~~~~----~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~ 434 (864)
|.|-+.|+-.|..||..|+..+.++.- +|+. ...+.+ .-...|..+|+++.|.++..|..-+.++... .-
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~--fW- 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK--FW- 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH--HH-
Confidence 445566778899999999999999765 4432 222221 2245688899999999999888776665320 11
Q ss_pred HHHhhCcHHHHHHHHcc--cCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHH
Q 048757 435 AIARAGGIKALVDLIFK--WSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANL 512 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~--~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L 512 (864)
.++-...+..++.-+.+ ..+...+||......|-.+..++.+...+ ..++|.+-..+.+ .++.+|.++...|..+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~l--e~~Lpal~~~l~D-~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLL--EQLLPALRYSLHD-NSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHH--HHHHHhcchhhhc-cchhHHHHHHHHHHHH
Confidence 11111122222222211 12344588888888888887777654433 2345667777777 4688898888888777
Q ss_pred hhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 048757 513 VAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSF 559 (864)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~ 559 (864)
-.+. ...+.+---.+.++.-|..++..+...-+..|.+...
T Consensus 330 k~vr------a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 330 KAVR------AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFL 370 (1005)
T ss_pred Hhhh------hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhc
Confidence 5421 1111111223445555666666666666666666543
No 393
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=32.33 E-value=5.8e+02 Score=26.30 Aligned_cols=150 Identities=17% Similarity=0.087 Sum_probs=78.7
Q ss_pred ccchhhhccChHH-HHHHHhcCC--CHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHH
Q 048757 521 NNAAVGLETGALE-ALVQLTFSK--HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGA 597 (864)
Q Consensus 521 ~~~~~~~~~~~i~-~L~~lL~~~--~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~a 597 (864)
..+..+.+.+.++ .|+.+|.+. ++++...+++.|.+|+..-+.. ... .+.+...+......
T Consensus 31 ~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~---------------~~~-~~~~~~~~~~~~~l 94 (266)
T PF04821_consen 31 DVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELL---------------VES-QPKDKNQRRNIPEL 94 (266)
T ss_pred HHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHh---------------ccC-CCCChHHHHHHHHH
Confidence 4455556666666 566665442 4666667777777774332111 000 00111111111111
Q ss_pred HHHhccCchhhHHhhhcCCHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCcc-------------cH----
Q 048757 598 LWGLSLSEANSIAIGREGGVAPLIALARS-----------AVVDVHETAAGALWNLAFNPG-------------NA---- 649 (864)
Q Consensus 598 L~~L~~~~~~~~~i~~~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~~L~~~~~-------------~~---- 649 (864)
.-.+ ..++..|.+.+++..++..+.. .+..+.+.+...++|+..-|+ .+
T Consensus 95 ~~~l---~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li 171 (266)
T PF04821_consen 95 LKYL---QSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLI 171 (266)
T ss_pred HHHH---HHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHH
Confidence 1110 1244566666777777766521 224567778889999876211 11
Q ss_pred HHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 650 LCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 650 ~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
..+.++|....|+.+..+.+...-.......+..+..+..
T Consensus 172 ~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~~ 211 (266)
T PF04821_consen 172 WALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQD 211 (266)
T ss_pred HHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCCC
Confidence 2455788888888888876433333345556666666554
No 394
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=30.31 E-value=1.5e+02 Score=31.67 Aligned_cols=73 Identities=8% Similarity=-0.007 Sum_probs=58.0
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~ 387 (864)
.++..+.+-|++.|+.|...|...+..+....... .+..|....+...|..++. +..+.|.......+.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~------~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKR------FRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchH------HHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999999998766543 4667888888888888888 5667777776666666554
No 395
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=29.69 E-value=96 Score=26.78 Aligned_cols=39 Identities=28% Similarity=0.194 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCc
Q 048757 632 HETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLS 670 (864)
Q Consensus 632 ~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~ 670 (864)
....+..|..|+..|+.-..+++.|+++.|+.||.+++.
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 456788889999999999999999999999999988874
No 396
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=29.37 E-value=32 Score=30.49 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=4.7
Q ss_pred HHHhcCcCcCe
Q 048757 102 TVAYCCPKLRR 112 (864)
Q Consensus 102 ~l~~~~~~L~~ 112 (864)
.+...|+.|..
T Consensus 55 ~mF~~~~~l~~ 65 (120)
T PF03382_consen 55 GMFAGCSSLNQ 65 (120)
T ss_pred HHHhhhhhcCC
Confidence 33344444444
No 397
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=29.31 E-value=4.2e+02 Score=32.06 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=84.5
Q ss_pred HHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhh-HH
Q 048757 488 ALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRN-RE 565 (864)
Q Consensus 488 ~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~-~~ 565 (864)
.+...+.. ++..+-...+.++.+++.-..-.+. . ...-.+.-..-.+..-..+......+|..++.. ++. ..
T Consensus 445 ~l~~~~~~-~~~~la~~lL~~~~~l~~l~~~~~~--~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~ 518 (727)
T PF12726_consen 445 ALLKSLDS-DNPDLAKALLKSLSPLIGLEKFPPK--K---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKE 518 (727)
T ss_pred HHHHhhcC-CChHHHHHHHHHHHHhccccccCCc--c---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 34444443 4466667777777777653111110 0 011111111112222234666778888888876 334 44
Q ss_pred HHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 566 AIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 566 ~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
.+.+.++...++.++-+ +++++.+.|...|... +...|-.+.+-.+++............+|.++..
T Consensus 519 l~~d~~~~~~i~s~lfs---p~~~l~qaA~~llk~~---------~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~ 585 (727)
T PF12726_consen 519 LLSDPDAAQAIWSLLFS---PDDDLYQAAQDLLKQA---------FDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTK 585 (727)
T ss_pred HHcCcchhhHHHhheeC---CChHHHHHHHHHHHHH---------hcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 44457789999999987 8999999999999863 3344556666777776666677777777777765
No 398
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.08 E-value=99 Score=27.17 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=32.3
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSE 397 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~ 397 (864)
+++.|++.|.++++++...|..+|.+.+.++.....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 578899999999999999999999998887755555443
No 399
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=26.56 E-value=96 Score=32.59 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=13.9
Q ss_pred HHhcCcCcCeeeecccCCCcHHHHHHHHh
Q 048757 103 VAYCCPKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 103 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
+.+.|+.|++|++.++. ||..++.++..
T Consensus 250 ml~~n~sl~slnvesnF-Itg~gi~a~~~ 277 (353)
T KOG3735|consen 250 MLKENKSLTSLNVESNF-ITGLGIMALLR 277 (353)
T ss_pred HHhhcchhhheeccccc-cccHHHHHHHH
Confidence 33445555555555544 55555544443
No 400
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.31 E-value=1.1e+03 Score=27.64 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=52.1
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~ 387 (864)
+-++.+|+.++++|++++..|...+..........++--|.-.+.+ ..-...|....++ .+++.+...+.+|.-|+-
T Consensus 48 ~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFL--rphy~~Lk~i~~~~~~~n~Kk~laDIlSvLam 125 (878)
T KOG2005|consen 48 GDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFL--RPHYGVLKEIYESMADSNLKKWLADILSVLAM 125 (878)
T ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhh--ccchhHHHHHHHhccCchhHhHHHHHHHHHhe
Confidence 3388999999999999999999999887665544332222111111 1223344444444 457788889999998887
Q ss_pred Cc
Q 048757 388 DS 389 (864)
Q Consensus 388 ~~ 389 (864)
..
T Consensus 126 t~ 127 (878)
T KOG2005|consen 126 TM 127 (878)
T ss_pred ee
Confidence 43
No 401
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=26.28 E-value=2.8e+02 Score=29.70 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhccCchhhHHhhhcC--CHHHHHHHHccCC---HHHHHHHHHHHHHhcCCcccHHHHH
Q 048757 590 LQERAAGALWGLSLSEANSIAIGREG--GVAPLIALARSAV---VDVHETAAGALWNLAFNPGNALCIV 653 (864)
Q Consensus 590 v~~~A~~aL~~L~~~~~~~~~i~~~~--~i~~Lv~lL~~~~---~~v~~~a~~aL~~L~~~~~~~~~i~ 653 (864)
+|..|...+..+..++.....+...+ .+..|+++++.++ .+++..|..+|..++.+......+.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45566666666666667777777666 8999999997643 6789999999999998665444433
No 402
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=26.16 E-value=4.8e+02 Score=23.42 Aligned_cols=127 Identities=20% Similarity=0.135 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHHhhcC--CCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh---------hhH-HH-
Q 048757 500 GVQEQAARALANLVAHG--DSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDD---------RNR-EA- 566 (864)
Q Consensus 500 ~v~~~a~~aL~~L~~~~--~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~---------~~~-~~- 566 (864)
-++...+.++..++.+. + .+ ...++.+++++.+ ++........+|..+...- ..| ..
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~-~W--------p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l 72 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQ-QW--------PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRREL 72 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-TS--------TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChh-hC--------chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHH
Confidence 45666677777776541 1 11 2567888888777 4555556666665553321 111 11
Q ss_pred ---HHH--CCChHHHHHHHHhcCCCC-HHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHH
Q 048757 567 ---IAA--AGGVEALVALVRSCSSSS-QGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGAL 639 (864)
Q Consensus 567 ---i~~--~~~i~~Lv~lL~~~~~~~-~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 639 (864)
+.+ ...++.+.+.+....... +++...+..++..+..--+ -..+.+.+.++.+.++|. ++..+..|+.+|
T Consensus 73 ~~~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~--~~~~~~~A~~cl 148 (148)
T PF08389_consen 73 KDALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQ--SPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTT--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcC--CHHHHHHHHHhC
Confidence 222 123555555565522222 8889999999999887422 234556778899999984 445577777665
No 403
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=25.81 E-value=9e+02 Score=27.57 Aligned_cols=145 Identities=13% Similarity=0.009 Sum_probs=89.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcC--C---CCHHHHHHHHHHHHHhccCchh
Q 048757 533 EALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCS--S---SSQGLQERAAGALWGLSLSEAN 607 (864)
Q Consensus 533 ~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~--~---~~~~v~~~A~~aL~~L~~~~~~ 607 (864)
+.+.+.+.+.++..+.+|+..|.. ++... -.+|.++.++...- + .+-++....+...+.|..++..
T Consensus 210 ~~It~a~~g~~~~~r~eAL~sL~T---DsGL~------~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 210 KEITEACTGSDEPLRQEALQSLET---DSGLQ------QLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHHhcCCHHHHHHHHHhhcc---CccHH------HHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 445555556677777776665543 21111 12555566655421 1 4566677888888888888877
Q ss_pred hHHhhhcCCHHHHHHHHccC----------CHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCC-cHHHHHH
Q 048757 608 SIAIGREGGVAPLIALARSA----------VVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSL-SKMARFM 676 (864)
Q Consensus 608 ~~~i~~~~~i~~Lv~lL~~~----------~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~-~~~~r~~ 676 (864)
.-.-.-+..+|.++.++-+. .-.+|.-|+..+..++.+-...-.-.....+..|.+.+.+.. +.....-
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG 360 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG 360 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence 55555566788888887432 245888899999988874443333345566678888887764 3444455
Q ss_pred HHHHHHHhhc
Q 048757 677 AALALAYIVD 686 (864)
Q Consensus 677 aa~aL~~l~~ 686 (864)
+...|..+..
T Consensus 361 ai~gL~~lg~ 370 (576)
T KOG2549|consen 361 AIAGLSELGH 370 (576)
T ss_pred HHHHHHHhhh
Confidence 5556665544
No 404
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=25.50 E-value=1e+03 Score=26.96 Aligned_cols=234 Identities=15% Similarity=0.026 Sum_probs=114.1
Q ss_pred cHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC----cch-------HHHHhcCcHHHHHHHHHc----cC---chhHH
Q 048757 441 GIKALVDLIFKWSSWNDGVLERAAGALANLAADD----KCS-------LEVARAGGVHALVMLARS----FM---FEGVQ 502 (864)
Q Consensus 441 ~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~----~~~-------~~i~~~~~i~~Lv~ll~~----~~---~~~v~ 502 (864)
+|..+.+++.. ++...++.++++.|++|-... ..+ ..+-+...|...+.++-. ++ .+..-
T Consensus 98 vir~ltqvis~--sg~iglQsn~~wlLGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lv 175 (589)
T PF11229_consen 98 VIRTLTQVISF--SGVIGLQSNAAWLLGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLV 175 (589)
T ss_pred HHHHHHHHHcC--ccccccccchHHHHHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHH
Confidence 67778888864 778899999999999884321 111 122244455555655532 11 12233
Q ss_pred HHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHh
Q 048757 503 EQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRS 582 (864)
Q Consensus 503 ~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~ 582 (864)
..++..+..........|-|-. -.+.+|+++ +-.++++..+.+.-..=+....+...+...-..|+++.-+..
T Consensus 176 kvvl~~ia~vgeS~qyPPVNWa-----alLsPLMRl--nfGeEvq~lCLeiAvtQaqSSqsAa~fLg~WlsPpli~sLs~ 248 (589)
T PF11229_consen 176 KVVLKPIATVGESYQYPPVNWA-----ALLSPLMRL--NFGEEVQQLCLEIAVTQAQSSQSAAMFLGSWLSPPLIHSLSV 248 (589)
T ss_pred HHHHHHhhhcCCCCCCCCccHH-----HHhhHHHhc--cccHHHHHHHHHHHHHhccccccHHHHHHhhcCcchhhhhhH
Confidence 3333333333221111222211 233455554 335778888877666556666667777777777787776653
Q ss_pred cCCCCHHHHHHHHHHHHHhccC--chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHh--CCcH
Q 048757 583 CSSSSQGLQERAAGALWGLSLS--EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVE--GGGV 658 (864)
Q Consensus 583 ~~~~~~~v~~~A~~aL~~L~~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~--~g~v 658 (864)
..+..-..-+..+... ++.-+.|.+.-++..+-...+-.++++...+..-|..=...|.-..-... ....
T Consensus 249 ------~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKlP~P~~h~Ws~Lc~tt 322 (589)
T PF11229_consen 249 ------NTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMKLPSPAQHCWSLLCETT 322 (589)
T ss_pred ------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence 3344444444444333 22223444422222221111224466666666666554333321111111 2345
Q ss_pred HHHHHHhcCC-CcHHH--HHHHHHHHHHhhcCCc
Q 048757 659 QALIHLCSSS-LSKMA--RFMAALALAYIVDGRM 689 (864)
Q Consensus 659 ~~L~~ll~~~-~~~~~--r~~aa~aL~~l~~~~~ 689 (864)
+.+.+++-+. ....+ -...+.+|..|.+...
T Consensus 323 ekIF~lLPn~i~~~eveLYi~vAkCLSEMtd~ei 356 (589)
T PF11229_consen 323 EKIFDLLPNKIQRNEVELYIGVAKCLSEMTDTEI 356 (589)
T ss_pred HHHHHhCcccccHHHHHHHHHHHHHHhhcCHHHH
Confidence 5566666332 11222 2334555555555333
No 405
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=25.11 E-value=1e+03 Score=28.33 Aligned_cols=139 Identities=21% Similarity=0.084 Sum_probs=88.1
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhH
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSI 609 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~ 609 (864)
.-|..|+.+|++.+..+.+.+-..+..+-..+... -.+..|++.--+ +++. .|+.+|..+ +.+..+
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~--t~s~----~~~~il~~~-~~P~~K- 69 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLS--TNSQ----RALEILVGV-QEPHDK- 69 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhh--cCcH----HHHHHHHhc-CCccHH-
Confidence 45678999999999888888888776553322111 124555554332 2343 455555532 111111
Q ss_pred HhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 610 AIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 610 ~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
..+..|=..+. .+..|..++..|+.+.. .+...-.|.+...++.|+..|..+.+..+-..|..+|.-+.-.-
T Consensus 70 -----~~~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 12223333343 46778889999999987 67788899999999999999987776766667777776555443
Q ss_pred c
Q 048757 689 M 689 (864)
Q Consensus 689 ~ 689 (864)
+
T Consensus 143 p 143 (668)
T PF04388_consen 143 P 143 (668)
T ss_pred c
Confidence 3
No 406
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=24.75 E-value=1.1e+03 Score=26.95 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=77.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhCC-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA-RSPPEGLQSEVAKAIANLSVD- 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~~L~~~- 388 (864)
++.|++.++++|++++..+...|..........+..-|.- -.......+. +++.- +..++..+..-+.+|..|+..
T Consensus 49 LellVeriqd~d~~l~~~sLn~LkeviksStSsmtavpkp-lkfLrp~y~d-l~~iydkw~~~n~K~~LaDilS~l~m~y 126 (881)
T COG5110 49 LELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMTAVPKP-LKFLRPNYLD-LLEIYDKWLEGNKKRWLADILSALCMVY 126 (881)
T ss_pred HHHHHHHhhCCChHHHHHHHHHHHHHHhccccccccCCch-hhhcCCCcch-HHHHHhhccCcchhhHHHHHHHHHeeec
Confidence 8999999999999999999999988776555433222211 1122233332 33332 334556666777777777652
Q ss_pred -chhHHHHH---hcCc-----------HHHHHHHH----cc------C-CHHHHHHHHHHHHHhcCC---CCcHHHHHhh
Q 048757 389 -SKVAKAVS---ENGG-----------IDILADLA----RS------T-NRLVAEEVVGGLWNLSVG---EDHKGAIARA 439 (864)
Q Consensus 389 -~~~~~~i~---~~g~-----------i~~Lv~lL----~~------~-~~~v~~~a~~aL~~Ls~~---~~~~~~i~~~ 439 (864)
+..+.... -.|. +..|..-+ .+ + ....++.+..+.--+-.+ .+.-..+.+-
T Consensus 127 se~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~dAiDlL~Ev 206 (881)
T COG5110 127 SENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDAIDLLVEV 206 (881)
T ss_pred ccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccchHHHHHHHHh
Confidence 21111111 0111 22222222 11 1 144666666665554332 2345566788
Q ss_pred CcHHHHHHHHcc
Q 048757 440 GGIKALVDLIFK 451 (864)
Q Consensus 440 g~i~~L~~lL~~ 451 (864)
|+|..++++...
T Consensus 207 g~Iekv~~fVd~ 218 (881)
T COG5110 207 GGIEKVLDFVDT 218 (881)
T ss_pred cchhhhhhhhcc
Confidence 999999888864
No 407
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=24.64 E-value=9.3e+02 Score=26.22 Aligned_cols=262 Identities=14% Similarity=0.070 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHHHHhCCchhHHHHHhcCc---HHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHH
Q 048757 371 PEGLQSEVAKAIANLSVDSKVAKAVSENGG---IDILADLARS--TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKAL 445 (864)
Q Consensus 371 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~---i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L 445 (864)
+..+..+|+++|+.+..+++....+-+.-+ +...+..+.+ .+..+....+.+|..-..++. +....-+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~----~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPK----IMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCc----ccchhhHHHH
Confidence 567888999999999998887776665554 3444555533 345565555555554333322 3333344555
Q ss_pred HHHHcccC--CCCHHHHHHHHHHHHHhcCCCcchHHHHhc--CcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcc
Q 048757 446 VDLIFKWS--SWNDGVLERAAGALANLAADDKCSLEVARA--GGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSN 521 (864)
Q Consensus 446 ~~lL~~~~--~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~--~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~ 521 (864)
+..+.... -++..+......++.++....+. .+.+. .-++.++..+-+. ...++..|...+..+...-+.+..
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~--~M~~~~~~W~~~l~~~l~~~-~k~ir~~a~~l~~~~~~~l~~~~~ 211 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ--QMIKHADIWFPILFPDLLSS-AKDIRTKAISLLLEAKKCLGPNKE 211 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhChhHH
Confidence 55443321 34556677778888877654432 12211 1355666555552 466676665555554432111111
Q ss_pred cchhh-------hccC-----hHHHHHHHhcC-CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcC-CCC
Q 048757 522 NAAVG-------LETG-----ALEALVQLTFS-KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCS-SSS 587 (864)
Q Consensus 522 ~~~~~-------~~~~-----~i~~L~~lL~~-~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~-~~~ 587 (864)
....+ ...+ ..+.|..++.+ ++.......-.++.-+-..+. +-.-..+...+.+.+.|. +++
T Consensus 212 ~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~----~~~w~~~n~wL~v~e~cFn~~d 287 (372)
T PF12231_consen 212 LSKSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR----LDSWEHLNEWLKVPEKCFNSSD 287 (372)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch----hhccHhHhHHHHHHHHHhcCCC
Confidence 10000 1111 22234444444 222111111222222222211 222234556666666553 368
Q ss_pred HHHHHHHHHHHHHhcc----CchhhHHhhhcCCHHHHHHHHccC-C----HHHHHHHHHHHHHhcC
Q 048757 588 QGLQERAAGALWGLSL----SEANSIAIGREGGVAPLIALARSA-V----VDVHETAAGALWNLAF 644 (864)
Q Consensus 588 ~~v~~~A~~aL~~L~~----~~~~~~~i~~~~~i~~Lv~lL~~~-~----~~v~~~a~~aL~~L~~ 644 (864)
+.+|..|..+=..+.- ++.......+- ...|+..-++.. . ..++..+...++++..
T Consensus 288 ~~~k~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 288 PQVKIQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 8889888777555432 11111111111 234444445432 2 2677788888887764
No 408
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=24.21 E-value=2e+03 Score=30.46 Aligned_cols=275 Identities=15% Similarity=0.108 Sum_probs=126.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHH-hcCCCHHHHHHHHHHHHHHhCCchhH
Q 048757 314 LLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDL-ARSPPEGLQSEVAKAIANLSVDSKVA 392 (864)
Q Consensus 314 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~ 392 (864)
+...+...+++++..++..+..+...+.......+-.. +. -...+..+..+ +.++++.++......+. ...-
T Consensus 486 ~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~-~~-v~~vl~~ll~~aia~~~~~i~~~v~~~l~-----~~~~ 558 (2341)
T KOG0891|consen 486 VDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHAL-QV-VKEVLSALLTVAIADTDPDIRIRVLSSLN-----ERFD 558 (2341)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHH-HH-HHHHHHHHHHHhccCCCcchhhhHHhhhc-----cchh
Confidence 44455667888888887776665433322100000000 00 01112222221 12345555544444333 1111
Q ss_pred HHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCC-cHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhc
Q 048757 393 KAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGED-HKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLA 471 (864)
Q Consensus 393 ~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~ 471 (864)
....+.+-+..+...+.+..-.+++.+...+++++.... ..-.-...-.+..+-++-. ++..-+.+..+.-+..+.
T Consensus 559 ~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~---sg~~r~~~~~a~~~~~~i 635 (2341)
T KOG0891|consen 559 AQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEF---SGMARTKEESAKLLCELI 635 (2341)
T ss_pred hhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhh---cchHHhHHHHHHHhhHHH
Confidence 123333345556666777777889999999998887332 1111111111111111111 111111111111111111
Q ss_pred CCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC-CCHHHHHHH
Q 048757 472 ADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS-KHEGVRQEA 550 (864)
Q Consensus 472 ~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a 550 (864)
........-........++..+.+. ...+...+..++..|+..+. ... ....+ ..++.+.+.+.. .+..-+..+
T Consensus 636 ~~~~~~i~~~v~~~l~~~~~~~~~~-~s~~~~~~~~~~~eL~~v~g--~~~-~~~~~-~~~~~~~~~l~~~s~~~rr~as 710 (2341)
T KOG0891|consen 636 ISSPVLISPYVGPILLVLLPKLQDP-SSGVEKAVLETIGELCAVGG--EEM-VKWVD-ELFSLIIKMLQDQSSLGKRLAA 710 (2341)
T ss_pred HHHHHHHHhhcCchHHHHHHHHhcc-chhhHHHHHHHHHHHHHhcc--chh-hhccc-hHHHHHHHHHHHhhhhhchhHH
Confidence 1000000001122245566666664 35677788899999998532 111 11122 344445555443 455667888
Q ss_pred HHHHHHhcCChhh--HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc
Q 048757 551 AGALWNLSFDDRN--REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE 605 (864)
Q Consensus 551 ~~~L~~Ls~~~~~--~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~ 605 (864)
.+++.++...... .......-.+..++..+.. .....++..+...++++....
T Consensus 711 lk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~t--e~~~~ir~~~v~~~g~~g~~d 765 (2341)
T KOG0891|consen 711 LKALGQLESSTGYVVDPYLDYPELLDILINILKT--EQSSTIRREAIRLLGLLGALD 765 (2341)
T ss_pred HHHhhhhhcccceEecccccChHHHHHHHHHHhH--hhhhHHHHHHHHHhhhhcccc
Confidence 8999988665322 1111112245555666654 345667777888877665443
No 409
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.12 E-value=2.3e+02 Score=34.35 Aligned_cols=60 Identities=15% Similarity=0.090 Sum_probs=40.2
Q ss_pred HHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCC---CCcccchhhhccChHHHHHHH
Q 048757 479 EVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGD---SNSNNAAVGLETGALEALVQL 538 (864)
Q Consensus 479 ~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~---~~~~~~~~~~~~~~i~~L~~l 538 (864)
.+-+...++.++.++.....++++..|...|+.+.+... ......+.+.....+..|+..
T Consensus 185 ~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ 247 (838)
T KOG2073|consen 185 WLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKI 247 (838)
T ss_pred HHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHH
Confidence 345667789999999877778888888888888877511 122344555566666666654
No 410
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=23.37 E-value=3.9e+02 Score=28.58 Aligned_cols=61 Identities=13% Similarity=0.098 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHhhC--cHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc
Q 048757 415 VAEEVVGGLWNLSVGEDHKGAIARAG--GIKALVDLIFKWSSWNDGVLERAAGALANLAADDK 475 (864)
Q Consensus 415 v~~~a~~aL~~Ls~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~ 475 (864)
++-.|...+..+...+.....+...+ .+..|++++.-...-...++..|..+|..++....
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 44445555555555666677776665 88999999975445567899999999999988655
No 411
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=21.23 E-value=9.8e+02 Score=27.12 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=29.3
Q ss_pred hHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 048757 350 RAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 350 ~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~ 387 (864)
..+.+.+.+.|+.|+.+|. +.+++++..|+..|..+..
T Consensus 54 ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~ 92 (475)
T PF04499_consen 54 ILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIR 92 (475)
T ss_pred HHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 3445667899999999996 4567888888888887644
No 412
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.13 E-value=1.1e+03 Score=28.09 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=71.3
Q ss_pred CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHH
Q 048757 571 GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNAL 650 (864)
Q Consensus 571 ~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~ 650 (864)
..|+.|..+-.+ +=++++..|+.+++.|-.+.+- .+...+..|++-|-++...+-..|...|.+|...+++..
T Consensus 304 rfievLe~lS~D---~L~~vk~raL~ti~~lL~~kPE----qE~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 304 RFIEVLEELSKD---PLEEVKKRALKTIYDLLTNKPE----QENNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHHccc---cHHHHHHHHHHHHHHHHhCCcH----HHHHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcce
Confidence 356666666665 7789999999999998766221 122345567888888888888999999999977444442
Q ss_pred HHHhCCcHHHHHHHhcCCC-cHHHHHHHHHHHHHhhcCCc
Q 048757 651 CIVEGGGVQALIHLCSSSL-SKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 651 ~i~~~g~v~~L~~ll~~~~-~~~~r~~aa~aL~~l~~~~~ 689 (864)
.+ ++..+.+++-.++ +......|...|.++...+.
T Consensus 377 ~V----vi~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshk 412 (988)
T KOG2038|consen 377 IV----VIDEIERLAFRPNVSERAHYYAVIFLNQMKLSHK 412 (988)
T ss_pred ee----hHHHHHHHHcccCccccceeehhhhhhhhHhccc
Confidence 22 2335555554443 23455667777777766655
No 413
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=20.63 E-value=9.3e+02 Score=24.73 Aligned_cols=211 Identities=13% Similarity=0.071 Sum_probs=114.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCCCcHHHHHhhC
Q 048757 364 LDLARSPPEGLQSEVAKAIANLSVD-SKVAKAVSENGGIDILADLARS--TNRLVAEEVVGGLWNLSVGEDHKGAIARAG 440 (864)
Q Consensus 364 ~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g 440 (864)
=..|.++++.+|..|...|..+... +.. .....-+..|++...+ .|......++.++..|...+.....
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~----- 76 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE----- 76 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh-----
Confidence 3457788999999999999985542 211 1222335666665422 3555555556666666543221111
Q ss_pred cHHHHHHHHcc---cCCCCHHHHHHHHHHHHHhcCCCcchHHHH--hcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 441 GIKALVDLIFK---WSSWNDGVLERAAGALANLAADDKCSLEVA--RAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 441 ~i~~L~~lL~~---~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~--~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
....+++-+.+ .++-....|..+...+..+..... ..+. ..+.+..+++.+..+.+|.-...+-..+..+...
T Consensus 77 ~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~--~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 77 SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHR--EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhH--HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 12223322221 112334566777777777765432 2222 2345778888888877787767777777766653
Q ss_pred CCCCcccchhhhccChHHHHHHHhcC---------C-CH-H-HHHHHHHHHH-HhcCChhhHHHHHHCCChHHHHHHHHh
Q 048757 516 GDSNSNNAAVGLETGALEALVQLTFS---------K-HE-G-VRQEAAGALW-NLSFDDRNREAIAAAGGVEALVALVRS 582 (864)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~L~~lL~~---------~-~~-~-v~~~a~~~L~-~Ls~~~~~~~~i~~~~~i~~Lv~lL~~ 582 (864)
- . . ....+.+.+.+.. + ++ . .++.-..+|. .++..+.. ..-++|.|++=|.+
T Consensus 155 ~----~-----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s 219 (262)
T PF14500_consen 155 F----D-----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDS 219 (262)
T ss_pred c----c-----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcC
Confidence 1 1 1 2334444444321 1 21 1 2222222332 33333322 22467888888886
Q ss_pred cCCCCHHHHHHHHHHHHHhc
Q 048757 583 CSSSSQGLQERAAGALWGLS 602 (864)
Q Consensus 583 ~~~~~~~v~~~A~~aL~~L~ 602 (864)
+++.++..++.+|....
T Consensus 220 ---~~~~~K~D~L~tL~~c~ 236 (262)
T PF14500_consen 220 ---TSPSVKLDSLQTLKACI 236 (262)
T ss_pred ---CCcHHHHHHHHHHHHHH
Confidence 78889999998887644
Done!