Query 048757
Match_columns 864
No_of_seqs 745 out of 4230
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 22:33:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l6x_A Catenin delta-1; cateni 100.0 8.4E-36 2.9E-40 334.9 34.1 372 306-689 45-479 (584)
2 3now_A UNC-45 protein, SD10334 100.0 9.4E-36 3.2E-40 345.4 32.3 439 303-804 283-780 (810)
3 3now_A UNC-45 protein, SD10334 100.0 2.2E-35 7.6E-40 342.4 35.3 467 316-835 254-762 (810)
4 1jdh_A Beta-catenin; beta-cate 100.0 1.3E-34 4.4E-39 334.8 36.9 472 308-843 16-521 (529)
5 3ul1_B Importin subunit alpha- 100.0 4E-34 1.4E-38 326.7 38.5 361 311-685 59-429 (510)
6 1jdh_A Beta-catenin; beta-cate 100.0 5.7E-34 1.9E-38 329.4 38.5 456 304-805 53-529 (529)
7 1xm9_A Plakophilin 1; armadill 100.0 2.4E-34 8.4E-39 323.1 34.3 368 310-689 3-452 (457)
8 3l6x_A Catenin delta-1; cateni 100.0 1.8E-34 6.2E-39 324.1 29.1 363 356-805 46-475 (584)
9 3tpo_A Importin subunit alpha- 100.0 3.4E-33 1.2E-37 320.9 39.5 361 310-684 77-447 (529)
10 3nmz_A APC variant protein; pr 100.0 9.9E-35 3.4E-39 319.8 25.4 367 311-692 34-456 (458)
11 2z6h_A Catenin beta-1, beta-ca 100.0 1.5E-33 5.3E-38 332.3 35.7 477 306-853 11-526 (644)
12 2z6h_A Catenin beta-1, beta-ca 100.0 3.9E-33 1.3E-37 328.9 38.5 462 304-808 50-529 (644)
13 4b8j_A Importin subunit alpha- 100.0 3.9E-32 1.3E-36 313.4 41.2 363 308-686 73-443 (528)
14 1xm9_A Plakophilin 1; armadill 100.0 4.4E-33 1.5E-37 312.9 31.4 359 359-805 3-448 (457)
15 2z6g_A B-catenin; FULL-length, 100.0 9E-33 3.1E-37 330.4 35.5 479 306-855 147-664 (780)
16 3nmz_A APC variant protein; pr 100.0 3.7E-33 1.3E-37 307.2 28.1 336 296-647 57-453 (458)
17 3ul1_B Importin subunit alpha- 100.0 1.9E-32 6.5E-37 312.8 34.5 371 300-688 91-480 (510)
18 2z6g_A B-catenin; FULL-length, 100.0 2.3E-32 7.9E-37 326.9 36.1 457 309-808 192-665 (780)
19 1wa5_B Importin alpha subunit; 100.0 4.8E-31 1.7E-35 304.2 43.4 362 308-686 86-457 (530)
20 3tpo_A Importin subunit alpha- 100.0 1.6E-31 5.4E-36 307.1 37.7 371 299-687 109-498 (529)
21 4b8j_A Importin subunit alpha- 100.0 2.1E-30 7.3E-35 298.9 38.8 372 300-689 108-499 (528)
22 2jdq_A Importin alpha-1 subuni 100.0 1.6E-30 5.6E-35 293.9 36.2 359 311-686 22-390 (450)
23 1wa5_B Importin alpha subunit; 100.0 2.2E-29 7.6E-34 290.3 40.0 372 300-689 121-513 (530)
24 2jdq_A Importin alpha-1 subuni 100.0 4.4E-29 1.5E-33 282.1 36.0 370 301-689 55-446 (450)
25 3nmw_A APC variant protein; AR 100.0 2.9E-29 1E-33 268.5 23.0 270 370-648 44-338 (354)
26 3nmw_A APC variant protein; AR 100.0 5.2E-29 1.8E-33 266.6 20.9 273 413-692 46-340 (354)
27 3opb_A SWI5-dependent HO expre 99.9 2.7E-24 9.2E-29 244.1 28.5 366 300-686 287-728 (778)
28 4hxt_A De novo protein OR329; 99.9 3.6E-23 1.2E-27 213.7 23.6 239 309-561 2-243 (252)
29 4hxt_A De novo protein OR329; 99.9 5.7E-23 2E-27 212.2 23.6 238 358-605 2-243 (252)
30 3opb_A SWI5-dependent HO expre 99.9 3.7E-23 1.3E-27 234.8 22.7 348 311-669 336-760 (778)
31 4db8_A Armadillo-repeat protei 99.9 5.9E-23 2E-27 212.2 21.2 235 311-559 14-251 (252)
32 4db8_A Armadillo-repeat protei 99.9 1E-22 3.4E-27 210.4 19.9 237 357-603 11-251 (252)
33 3tt9_A Plakophilin-2; cell adh 99.9 2.6E-21 9E-26 191.9 17.3 197 311-515 10-230 (233)
34 3tt9_A Plakophilin-2; cell adh 99.9 3.5E-21 1.2E-25 191.0 14.5 197 358-560 8-230 (233)
35 4db6_A Armadillo repeat protei 99.8 5.9E-20 2E-24 183.8 20.6 198 481-686 9-209 (210)
36 4db6_A Armadillo repeat protei 99.8 1.1E-19 3.8E-24 181.8 21.4 197 356-559 10-209 (210)
37 1xqr_A HSPBP1 protein; armadil 99.8 5.7E-18 1.9E-22 176.1 23.9 225 372-603 54-287 (296)
38 1xqr_A HSPBP1 protein; armadil 99.8 4.7E-18 1.6E-22 176.7 20.2 224 412-644 53-287 (296)
39 2ast_B S-phase kinase-associat 99.8 2.8E-18 9.5E-23 185.3 17.6 208 4-217 44-282 (336)
40 2ast_B S-phase kinase-associat 99.8 8.6E-18 2.9E-22 181.4 18.6 211 6-224 92-309 (336)
41 3ogk_B Coronatine-insensitive 99.7 1.1E-16 3.7E-21 187.1 20.6 207 8-218 294-524 (592)
42 2p1m_B Transport inhibitor res 99.7 1.9E-16 6.6E-21 185.1 21.7 207 7-219 289-518 (594)
43 1b3u_A Protein (protein phosph 99.7 3.3E-15 1.1E-19 174.4 27.3 449 311-806 89-548 (588)
44 3ogk_B Coronatine-insensitive 99.7 1E-15 3.5E-20 178.8 20.9 211 6-224 269-504 (592)
45 1b3u_A Protein (protein phosph 99.7 1E-14 3.4E-19 170.3 26.1 450 311-805 128-586 (588)
46 2p1m_B Transport inhibitor res 99.6 6.4E-15 2.2E-19 172.2 21.7 206 7-219 184-468 (594)
47 1oyz_A Hypothetical protein YI 99.6 1.7E-14 5.8E-19 151.0 22.7 261 353-682 18-278 (280)
48 3grl_A General vesicular trans 99.6 9.3E-13 3.2E-17 145.8 37.2 362 309-689 21-452 (651)
49 1oyz_A Hypothetical protein YI 99.6 5.8E-14 2E-18 146.9 21.5 255 307-640 21-278 (280)
50 4fdd_A Transportin-1; heat rep 99.6 1.3E-13 4.4E-18 168.0 24.0 356 311-685 130-511 (852)
51 2ca6_A RAN GTPase-activating p 99.6 1.4E-13 4.8E-18 151.3 21.9 209 7-222 32-289 (386)
52 3grl_A General vesicular trans 99.6 3.1E-12 1.1E-16 141.7 32.3 363 291-654 43-460 (651)
53 2vgl_B AP-2 complex subunit be 99.5 5.6E-13 1.9E-17 154.5 26.1 330 311-688 123-459 (591)
54 4fdd_A Transportin-1; heat rep 99.5 8.4E-14 2.9E-18 169.7 18.5 352 312-689 93-474 (852)
55 1z7x_W Ribonuclease inhibitor; 99.5 7.2E-14 2.5E-18 157.7 16.1 209 6-221 2-241 (461)
56 3e4g_A ATP synthase subunit S, 99.5 8.7E-15 3E-19 137.3 7.0 94 54-152 61-157 (176)
57 2vgl_B AP-2 complex subunit be 99.5 1.2E-12 4.1E-17 151.7 26.5 430 310-806 50-493 (591)
58 3e4g_A ATP synthase subunit S, 99.5 1.1E-14 3.6E-19 136.7 6.6 104 79-186 60-171 (176)
59 2ca6_A RAN GTPase-activating p 99.5 2.2E-13 7.6E-18 149.6 17.9 187 29-221 29-258 (386)
60 1z7x_W Ribonuclease inhibitor; 99.5 2.7E-13 9.1E-18 153.0 16.9 207 7-220 142-383 (461)
61 3ltm_A Alpha-REP4; protein eng 99.4 5.2E-12 1.8E-16 125.8 18.2 187 309-561 19-205 (211)
62 3ltj_A Alpharep-4; protein eng 99.4 1E-11 3.5E-16 122.6 18.4 184 309-558 14-197 (201)
63 1w63_A Adapter-related protein 99.4 1.3E-10 4.6E-15 135.0 29.4 408 311-805 144-576 (618)
64 1w63_A Adapter-related protein 99.4 8.2E-11 2.8E-15 136.8 27.2 432 311-806 72-540 (618)
65 3ltm_A Alpha-REP4; protein eng 99.4 1.3E-11 4.5E-16 122.8 17.7 188 356-604 17-204 (211)
66 3ltj_A Alpharep-4; protein eng 99.3 2.2E-11 7.5E-16 120.2 17.8 185 357-602 13-197 (201)
67 3goz_A Leucine-rich repeat-con 99.3 4E-12 1.4E-16 138.2 12.9 208 4-218 19-264 (362)
68 1u6g_C TIP120 protein, CAND1; 99.3 8.5E-11 2.9E-15 149.0 25.5 464 310-806 49-598 (1230)
69 3un9_A NLR family member X1; l 99.3 2.3E-11 7.7E-16 131.8 16.1 166 51-223 69-255 (372)
70 3un9_A NLR family member X1; l 99.3 1.6E-11 5.3E-16 133.0 12.6 166 31-203 71-260 (372)
71 2bpt_A Importin beta-1 subunit 99.2 5.6E-10 1.9E-14 136.3 25.3 354 311-685 371-762 (861)
72 1qgr_A Protein (importin beta 99.2 4.5E-10 1.5E-14 137.5 23.7 353 311-684 368-772 (876)
73 1ibr_B P95, importin beta-1 su 99.2 1.1E-09 3.8E-14 123.1 24.7 312 363-688 95-439 (462)
74 2bpt_A Importin beta-1 subunit 99.2 2.1E-09 7.2E-14 131.2 27.2 456 312-806 7-529 (861)
75 3goz_A Leucine-rich repeat-con 99.2 2.6E-10 8.7E-15 123.8 16.6 205 12-224 3-242 (362)
76 1ibr_B P95, importin beta-1 su 99.2 9.4E-10 3.2E-14 123.7 21.9 380 361-806 4-437 (462)
77 1qgr_A Protein (importin beta 99.2 4.7E-09 1.6E-13 128.4 28.1 356 311-689 130-540 (876)
78 4fmz_A Internalin; leucine ric 99.1 2.6E-10 9E-15 123.1 10.3 196 6-222 131-326 (347)
79 4fmz_A Internalin; leucine ric 99.1 2.5E-10 8.5E-15 123.3 9.6 143 8-166 45-187 (347)
80 2vgl_A Adaptor protein complex 99.0 3.7E-08 1.3E-12 114.0 27.0 310 311-668 113-453 (621)
81 1u6g_C TIP120 protein, CAND1; 99.0 1.3E-08 4.3E-13 129.1 23.1 416 360-805 8-505 (1230)
82 2vgl_A Adaptor protein complex 99.0 6.2E-08 2.1E-12 112.1 25.8 440 311-806 76-550 (621)
83 2ra8_A Uncharacterized protein 99.0 1.7E-09 5.9E-14 115.9 10.7 198 8-218 108-341 (362)
84 1h6u_A Internalin H; cell adhe 98.9 6.8E-10 2.3E-14 117.4 6.9 191 8-222 42-232 (308)
85 4ezg_A Putative uncharacterize 98.9 3.1E-10 1.1E-14 111.3 3.5 104 106-218 86-192 (197)
86 4fcg_A Uncharacterized protein 98.9 4.9E-11 1.7E-15 127.3 -2.6 17 205-221 275-291 (328)
87 4ady_A RPN2, 26S proteasome re 98.9 2E-06 7E-11 100.3 34.5 304 316-691 365-681 (963)
88 1o6v_A Internalin A; bacterial 98.9 2E-09 6.9E-14 121.1 9.3 189 7-219 177-365 (466)
89 1wwl_A Monocyte differentiatio 98.9 2.2E-10 7.6E-15 121.5 1.2 130 30-166 93-238 (312)
90 4glp_A Monocyte differentiatio 98.9 1.6E-10 5.5E-15 122.5 -0.1 201 8-221 65-286 (310)
91 4ezg_A Putative uncharacterize 98.9 3.2E-10 1.1E-14 111.3 2.0 152 30-195 42-194 (197)
92 1o6v_A Internalin A; bacterial 98.9 3.2E-09 1.1E-13 119.5 9.0 193 6-222 198-390 (466)
93 4ady_A RPN2, 26S proteasome re 98.9 5.8E-07 2E-11 104.8 27.8 316 309-689 392-722 (963)
94 1h6u_A Internalin H; cell adhe 98.9 2.3E-09 7.9E-14 113.2 7.2 173 30-223 39-211 (308)
95 1h6t_A Internalin B; cell adhe 98.8 1.4E-09 4.7E-14 113.9 5.0 174 30-224 44-217 (291)
96 1ozn_A Reticulon 4 receptor; N 98.8 2.1E-10 7E-15 120.1 -1.6 206 6-223 31-241 (285)
97 4fcg_A Uncharacterized protein 98.8 7.4E-11 2.5E-15 125.9 -5.3 194 8-216 105-310 (328)
98 1io0_A Tropomodulin; LRR prote 98.8 4.5E-08 1.6E-12 94.5 14.3 86 52-141 34-128 (185)
99 1m9s_A Internalin B; cell inva 98.8 1.7E-09 5.8E-14 124.6 4.3 173 30-223 41-213 (605)
100 4gmo_A Putative uncharacterize 98.8 3.2E-08 1.1E-12 116.1 14.6 197 308-514 33-258 (684)
101 2z80_A TOLL-like receptor 2, v 98.8 3.9E-10 1.3E-14 122.0 -1.7 203 6-220 51-290 (353)
102 2z80_A TOLL-like receptor 2, v 98.8 7.8E-10 2.7E-14 119.6 0.3 179 31-221 51-236 (353)
103 4gmo_A Putative uncharacterize 98.8 1.8E-08 6.3E-13 118.1 11.7 197 358-558 34-257 (684)
104 2z66_A Variable lymphocyte rec 98.8 1.7E-10 5.7E-15 122.2 -5.6 202 7-221 28-237 (306)
105 3o53_A Protein LRIM1, AGAP0063 98.8 2.3E-10 7.7E-15 121.7 -4.7 105 107-220 119-227 (317)
106 2ra8_A Uncharacterized protein 98.8 6.5E-09 2.2E-13 111.4 6.6 182 33-224 108-323 (362)
107 3oja_A Leucine-rich immune mol 98.7 3.9E-10 1.3E-14 127.3 -3.4 192 5-220 32-227 (487)
108 3v47_A TOLL-like receptor 5B a 98.7 1.7E-09 6E-14 121.4 1.3 133 6-145 29-165 (455)
109 3v47_A TOLL-like receptor 5B a 98.7 4.6E-09 1.6E-13 117.9 3.5 63 154-219 297-359 (455)
110 1io0_A Tropomodulin; LRR prote 98.7 1.2E-07 4E-12 91.6 12.6 124 69-197 25-166 (185)
111 3zyj_A Leucine-rich repeat-con 98.7 6.9E-10 2.4E-14 123.9 -4.1 153 6-166 63-217 (440)
112 3zyj_A Leucine-rich repeat-con 98.7 1E-09 3.5E-14 122.5 -2.8 195 9-221 45-245 (440)
113 2z66_A Variable lymphocyte rec 98.7 6E-10 2E-14 117.9 -4.6 209 5-223 50-264 (306)
114 4glp_A Monocyte differentiatio 98.7 3.5E-09 1.2E-13 112.1 1.3 181 32-220 64-264 (310)
115 3zyi_A Leucine-rich repeat-con 98.7 1.2E-09 4E-14 122.6 -3.0 59 106-166 145-206 (452)
116 3zyi_A Leucine-rich repeat-con 98.6 1.3E-09 4.4E-14 122.2 -3.0 202 6-218 74-277 (452)
117 3bz5_A Internalin-J, INLJ; leu 98.6 1.1E-08 3.9E-13 114.1 4.6 182 7-218 42-223 (457)
118 2je0_A Acidic leucine-rich nuc 98.6 4.9E-09 1.7E-13 97.6 1.0 126 54-190 17-148 (149)
119 2z81_A CD282 antigen, TOLL-lik 98.6 1.2E-07 4.1E-12 109.1 12.6 150 53-219 309-463 (549)
120 3rfs_A Internalin B, repeat mo 98.6 4.6E-09 1.6E-13 108.8 0.6 178 30-221 39-219 (272)
121 2z7x_B TOLL-like receptor 1, v 98.6 2.1E-08 7.1E-13 114.6 5.9 173 30-218 274-455 (520)
122 3rgz_A Protein brassinosteroid 98.6 1.3E-09 4.4E-14 130.7 -4.5 13 30-42 124-136 (768)
123 1xku_A Decorin; proteoglycan, 98.6 3.2E-09 1.1E-13 113.6 -1.0 200 6-220 51-276 (330)
124 3rgz_A Protein brassinosteroid 98.6 4.5E-10 1.5E-14 134.7 -8.7 106 29-145 148-258 (768)
125 1m9s_A Internalin B; cell inva 98.6 2.3E-08 7.8E-13 115.2 5.7 164 7-191 43-206 (605)
126 3t6q_A CD180 antigen; protein- 98.6 3.2E-09 1.1E-13 124.0 -2.3 208 7-223 301-516 (606)
127 2o6q_A Variable lymphocyte rec 98.6 5.7E-09 2E-13 108.0 -0.6 198 6-220 15-218 (270)
128 1xku_A Decorin; proteoglycan, 98.6 9.9E-09 3.4E-13 109.7 1.2 145 7-167 31-182 (330)
129 3oja_B Anopheles plasmodium-re 98.6 7.4E-09 2.5E-13 120.3 0.2 86 131-222 251-339 (597)
130 3oja_B Anopheles plasmodium-re 98.6 2.6E-09 9E-14 124.1 -3.8 83 135-221 233-315 (597)
131 3o6n_A APL1; leucine-rich repe 98.6 1E-08 3.5E-13 112.5 1.0 105 108-222 226-333 (390)
132 2ell_A Acidic leucine-rich nuc 98.6 6.4E-09 2.2E-13 99.0 -0.6 58 106-166 69-130 (168)
133 2id5_A Lingo-1, leucine rich r 98.6 5.6E-09 1.9E-13 118.0 -1.2 152 7-167 56-211 (477)
134 2z81_A CD282 antigen, TOLL-lik 98.6 1E-07 3.6E-12 109.6 9.5 84 132-218 332-421 (549)
135 2id5_A Lingo-1, leucine rich r 98.6 5.3E-09 1.8E-13 118.1 -1.4 153 6-167 31-187 (477)
136 3vq2_A TLR4, TOLL-like recepto 98.6 9.8E-10 3.3E-14 128.4 -7.7 199 7-220 328-534 (606)
137 3t6q_A CD180 antigen; protein- 98.6 2.5E-09 8.7E-14 124.8 -4.3 185 30-222 299-491 (606)
138 3vq2_A TLR4, TOLL-like recepto 98.6 5.5E-10 1.9E-14 130.5 -10.0 184 30-222 326-512 (606)
139 1wwl_A Monocyte differentiatio 98.6 1.8E-08 6.2E-13 106.7 2.6 202 6-221 94-310 (312)
140 1ozn_A Reticulon 4 receptor; N 98.5 5.9E-09 2E-13 108.9 -1.2 199 9-222 13-216 (285)
141 3o53_A Protein LRIM1, AGAP0063 98.5 9.2E-09 3.2E-13 109.2 0.1 192 7-222 10-206 (317)
142 2z7x_B TOLL-like receptor 1, v 98.5 1.2E-07 4.2E-12 108.2 9.3 87 132-219 322-411 (520)
143 3o6n_A APL1; leucine-rich repe 98.5 6.6E-09 2.3E-13 114.0 -1.5 84 134-221 226-309 (390)
144 1te4_A Conserved protein MTH18 98.5 8E-09 2.7E-13 93.6 -0.9 120 529-683 11-130 (131)
145 2je0_A Acidic leucine-rich nuc 98.5 1.8E-08 6E-13 93.8 1.3 124 31-164 16-148 (149)
146 3bz5_A Internalin-J, INLJ; leu 98.5 4.4E-08 1.5E-12 109.4 4.2 167 30-222 40-206 (457)
147 2z62_A TOLL-like receptor 4, v 98.5 2.9E-09 1E-13 110.7 -5.2 130 7-144 28-159 (276)
148 1h6t_A Internalin B; cell adhe 98.5 1.3E-07 4.5E-12 98.8 7.0 149 52-221 44-192 (291)
149 2xwt_C Thyrotropin receptor; s 98.5 2.2E-09 7.4E-14 109.0 -6.4 13 52-64 53-65 (239)
150 2z63_A TOLL-like receptor 4, v 98.5 7.2E-10 2.5E-14 128.5 -11.4 13 154-166 443-455 (570)
151 3oja_A Leucine-rich immune mol 98.5 9.4E-09 3.2E-13 115.9 -2.7 190 9-222 12-206 (487)
152 4ecn_A Leucine-rich repeat pro 98.4 2.9E-08 1E-12 118.4 1.2 150 7-166 448-629 (876)
153 2ell_A Acidic leucine-rich nuc 98.4 1.2E-08 4E-13 97.1 -1.9 130 30-168 22-159 (168)
154 4ecn_A Leucine-rich repeat pro 98.4 4.9E-08 1.7E-12 116.5 2.6 181 28-221 444-658 (876)
155 1ho8_A Vacuolar ATP synthase s 98.4 4.7E-05 1.6E-09 81.6 25.1 325 311-643 79-475 (480)
156 2o6q_A Variable lymphocyte rec 98.4 1.3E-08 4.5E-13 105.2 -3.1 175 6-191 36-214 (270)
157 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 6.2E-08 2.1E-12 111.8 1.9 178 32-221 331-511 (562)
158 3rfs_A Internalin B, repeat mo 98.4 4.5E-08 1.5E-12 101.3 0.5 189 7-217 41-232 (272)
159 1p9a_G Platelet glycoprotein I 98.4 2.7E-08 9.1E-13 104.0 -1.5 195 6-221 9-209 (290)
160 1ziw_A TOLL-like receptor 3; i 98.3 4.9E-08 1.7E-12 115.6 -0.3 205 7-223 381-600 (680)
161 1xeu_A Internalin C; cellular 98.3 1.1E-07 3.9E-12 97.6 2.3 149 52-222 39-187 (263)
162 1xeu_A Internalin C; cellular 98.3 7E-08 2.4E-12 99.1 0.7 144 29-191 38-181 (263)
163 1ho8_A Vacuolar ATP synthase s 98.3 0.00038 1.3E-08 74.7 28.9 319 357-685 76-475 (480)
164 4eco_A Uncharacterized protein 98.3 4.6E-08 1.6E-12 114.3 -1.4 153 28-191 202-386 (636)
165 2z63_A TOLL-like receptor 4, v 98.3 4E-09 1.4E-13 122.2 -10.4 177 33-222 305-485 (570)
166 1te4_A Conserved protein MTH18 98.3 3.8E-08 1.3E-12 89.1 -1.7 122 482-642 10-131 (131)
167 3g06_A SSPH2 (leucine-rich rep 98.3 4E-07 1.4E-11 104.9 6.4 79 133-221 220-298 (622)
168 1ziw_A TOLL-like receptor 3; i 98.3 2.5E-08 8.7E-13 118.0 -4.7 204 7-221 353-574 (680)
169 2ft3_A Biglycan; proteoglycan, 98.3 3.8E-08 1.3E-12 105.2 -3.2 201 6-222 53-279 (332)
170 1ogq_A PGIP-2, polygalacturona 98.3 1.7E-08 5.7E-13 106.9 -6.1 179 29-220 73-257 (313)
171 3tjz_B Coatomer subunit gamma; 98.3 9.3E-06 3.2E-10 85.3 14.7 270 402-710 71-344 (355)
172 1ogq_A PGIP-2, polygalacturona 98.3 1.1E-08 3.9E-13 108.2 -7.9 200 7-220 76-281 (313)
173 3j0a_A TOLL-like receptor 5; m 98.2 1.8E-08 6.3E-13 122.0 -7.7 134 5-145 22-159 (844)
174 1pgv_A TMD-1, tropomodulin TMD 98.2 1E-05 3.4E-10 77.3 12.5 121 53-196 40-171 (197)
175 3m19_A Variable lymphocyte rec 98.2 4.9E-08 1.7E-12 99.7 -3.9 16 204-219 176-191 (251)
176 1p9a_G Platelet glycoprotein I 98.2 1E-07 3.4E-12 99.6 -1.7 176 29-220 7-185 (290)
177 3j0a_A TOLL-like receptor 5; m 98.2 2.8E-08 9.5E-13 120.4 -7.0 110 6-119 47-159 (844)
178 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 1.3E-06 4.5E-11 100.6 6.5 86 132-219 351-440 (562)
179 3g06_A SSPH2 (leucine-rich rep 98.2 1.6E-06 5.4E-11 100.0 6.6 13 206-218 240-252 (622)
180 2xwt_C Thyrotropin receptor; s 98.2 2.7E-08 9.1E-13 100.9 -7.5 199 6-219 30-238 (239)
181 3b2a_A TON_1937, putative unch 98.1 0.00017 5.9E-09 68.6 18.4 217 357-597 32-255 (265)
182 2ft3_A Biglycan; proteoglycan, 98.1 1.9E-07 6.3E-12 99.8 -1.9 202 7-220 78-307 (332)
183 2z62_A TOLL-like receptor 4, v 98.1 8.9E-08 3.1E-12 99.3 -4.5 177 32-220 28-213 (276)
184 2qk2_A LP04448P; mini spindles 98.1 2.1E-05 7.3E-10 79.4 12.8 181 488-685 19-204 (242)
185 3m19_A Variable lymphocyte rec 98.1 3.4E-07 1.2E-11 93.3 -1.0 169 8-192 15-189 (251)
186 1a9n_A U2A', U2A'; complex (nu 98.1 6.3E-07 2.2E-11 85.7 0.6 129 52-192 17-150 (176)
187 2db0_A 253AA long hypothetical 98.0 0.00049 1.7E-08 62.5 18.6 216 396-644 29-246 (253)
188 1pgv_A TMD-1, tropomodulin TMD 98.0 2.2E-05 7.4E-10 75.0 10.5 119 22-144 31-167 (197)
189 3tjz_B Coatomer subunit gamma; 98.0 5.4E-05 1.8E-09 79.5 14.4 278 358-681 68-348 (355)
190 4eco_A Uncharacterized protein 98.0 1.2E-06 4.2E-11 102.2 2.1 86 132-219 247-342 (636)
191 3b2a_A TON_1937, putative unch 98.0 0.00047 1.6E-08 65.7 19.0 184 311-515 35-219 (265)
192 2qk2_A LP04448P; mini spindles 98.0 7.7E-05 2.6E-09 75.2 15.0 181 313-515 19-206 (242)
193 3cvr_A Invasion plasmid antige 98.0 1.3E-06 4.5E-11 99.3 1.7 15 206-220 229-243 (571)
194 1jl5_A Outer protein YOPM; leu 98.0 6.3E-06 2.2E-10 91.7 6.6 71 6-87 90-160 (454)
195 1jl5_A Outer protein YOPM; leu 98.0 4.4E-06 1.5E-10 93.0 4.9 177 9-219 73-249 (454)
196 1dce_A Protein (RAB geranylger 97.9 2.8E-07 9.6E-12 105.4 -5.1 81 106-191 461-542 (567)
197 2o6s_A Variable lymphocyte rec 97.9 7.4E-07 2.5E-11 87.9 -1.9 148 7-167 7-159 (208)
198 2db0_A 253AA long hypothetical 97.9 0.0023 7.8E-08 58.2 20.4 212 438-685 30-245 (253)
199 3e6j_A Variable lymphocyte rec 97.9 1.7E-06 5.7E-11 86.8 0.0 76 5-87 17-95 (229)
200 1a9n_A U2A', U2A'; complex (nu 97.9 1.9E-06 6.6E-11 82.3 0.3 132 78-221 17-154 (176)
201 1ds9_A Outer arm dynein; leuci 97.8 1.2E-06 4.1E-11 85.6 -3.0 102 52-167 46-151 (198)
202 1ds9_A Outer arm dynein; leuci 97.8 1.1E-06 3.6E-11 86.0 -3.7 127 77-213 45-180 (198)
203 3cvr_A Invasion plasmid antige 97.8 3.5E-06 1.2E-10 95.8 -0.1 167 23-220 49-220 (571)
204 3sb4_A Hypothetical leucine ri 97.7 3.2E-06 1.1E-10 89.9 -0.8 91 121-218 213-308 (329)
205 2v70_A SLIT-2, SLIT homolog 2 97.7 4.1E-06 1.4E-10 83.3 -0.2 81 106-191 79-162 (220)
206 2v9t_B SLIT homolog 2 protein 97.6 5.6E-06 1.9E-10 82.3 -0.8 82 106-191 78-161 (220)
207 2qk1_A Protein STU2; STU2P, XM 97.6 0.00025 8.6E-09 71.4 10.8 187 489-685 21-219 (249)
208 2qk1_A Protein STU2; STU2P, XM 97.6 0.001 3.5E-08 66.9 15.2 190 363-558 21-219 (249)
209 2o6s_A Variable lymphocyte rec 97.6 1.3E-05 4.5E-10 78.8 1.1 105 53-166 27-134 (208)
210 2iw3_A Elongation factor 3A; a 97.5 0.0023 7.8E-08 76.0 18.9 296 363-684 19-322 (986)
211 4g8a_A TOLL-like receptor 4; l 97.5 7E-06 2.4E-10 96.1 -2.4 13 52-64 74-86 (635)
212 4g8a_A TOLL-like receptor 4; l 97.5 1.2E-06 4E-11 102.7 -9.2 131 78-220 443-580 (635)
213 3sb4_A Hypothetical leucine ri 97.5 8.1E-05 2.8E-09 79.0 5.7 74 154-237 224-300 (329)
214 2iw3_A Elongation factor 3A; a 97.5 0.0055 1.9E-07 72.7 21.4 295 314-643 19-323 (986)
215 3e6j_A Variable lymphocyte rec 97.5 3.1E-05 1.1E-09 77.4 1.8 39 180-219 133-171 (229)
216 2xot_A Amphoterin-induced prot 97.4 5.3E-06 1.8E-10 89.5 -4.4 167 9-191 20-198 (361)
217 2xot_A Amphoterin-induced prot 97.4 6.5E-06 2.2E-10 88.8 -4.4 160 6-173 38-206 (361)
218 1wa5_C Importin alpha RE-expor 97.4 0.022 7.7E-07 69.6 26.5 352 313-687 89-526 (960)
219 2v9t_B SLIT homolog 2 protein 97.3 2.2E-05 7.4E-10 78.0 -0.9 13 107-119 103-115 (220)
220 3dad_A FH1/FH2 domain-containi 97.3 0.0051 1.7E-07 62.7 16.3 149 364-515 124-287 (339)
221 2v70_A SLIT-2, SLIT homolog 2 97.3 4.3E-05 1.5E-09 75.8 0.6 136 80-223 32-169 (220)
222 1dce_A Protein (RAB geranylger 97.3 4.8E-05 1.6E-09 86.9 0.8 120 55-189 442-567 (567)
223 1lrv_A LRV, leucine-rich repea 97.2 4.6E-05 1.6E-09 75.8 -0.9 186 365-682 57-242 (244)
224 3dad_A FH1/FH2 domain-containi 97.1 0.024 8.1E-07 57.9 18.5 154 312-472 121-286 (339)
225 4ay9_X Follicle-stimulating ho 97.1 2.8E-06 9.5E-11 91.3 -11.2 84 32-119 30-115 (350)
226 1lrv_A LRV, leucine-rich repea 97.0 7.5E-05 2.6E-09 74.3 -1.6 187 315-640 56-242 (244)
227 2wfh_A SLIT homolog 2 protein 96.9 0.00028 9.6E-09 68.2 1.8 79 80-166 31-112 (193)
228 2o6r_A Variable lymphocyte rec 96.8 0.00027 9.4E-09 67.1 1.0 15 205-219 122-136 (177)
229 4b8c_D Glucose-repressible alc 96.7 0.00016 5.4E-09 85.4 -1.4 105 52-168 222-328 (727)
230 4b8c_D Glucose-repressible alc 96.7 0.00023 7.8E-09 84.0 -0.1 107 105-220 221-329 (727)
231 2o6r_A Variable lymphocyte rec 96.7 0.00015 5.1E-09 69.0 -1.4 61 106-169 74-137 (177)
232 2wfh_A SLIT homolog 2 protein 96.5 0.00034 1.2E-08 67.6 -0.5 104 54-167 31-137 (193)
233 3rw6_A Nuclear RNA export fact 96.5 0.0033 1.1E-07 63.4 6.8 83 105-189 167-258 (267)
234 1w8a_A SLIT protein; signaling 96.5 9.1E-05 3.1E-09 71.6 -5.0 12 133-144 101-112 (192)
235 1w8a_A SLIT protein; signaling 96.4 0.00032 1.1E-08 67.7 -1.3 81 80-166 29-112 (192)
236 4ay9_X Follicle-stimulating ho 96.2 3.5E-05 1.2E-09 82.6 -10.5 206 6-223 29-239 (350)
237 4fdw_A Leucine rich hypothetic 95.9 0.0012 4.1E-08 71.8 -0.5 75 33-117 158-235 (401)
238 1wa5_C Importin alpha RE-expor 95.9 0.28 9.7E-06 59.8 20.6 303 373-687 261-629 (960)
239 3m1i_C Exportin-1; heat repeat 95.6 3.1 0.00011 51.1 28.4 212 313-558 20-262 (1049)
240 3rw6_A Nuclear RNA export fact 95.1 0.01 3.5E-07 59.8 3.4 82 75-163 165-258 (267)
241 2x19_B Importin-13; nuclear tr 95.1 2.6 8.8E-05 51.3 25.4 339 319-687 459-847 (963)
242 3m1i_C Exportin-1; heat repeat 94.6 9.1 0.00031 46.9 28.4 365 311-689 140-572 (1049)
243 4ffb_C Protein STU2; tubulin f 94.6 0.57 2E-05 47.5 14.9 190 359-559 11-212 (278)
244 1upk_A MO25 protein; transfera 94.4 1.8 6.2E-05 44.0 17.6 201 436-648 74-287 (341)
245 2r9u_A Variable lymphocyte rec 94.3 0.022 7.4E-07 53.6 3.1 56 108-166 33-91 (174)
246 4fdw_A Leucine rich hypothetic 94.3 0.0078 2.7E-07 65.3 -0.1 58 131-191 268-332 (401)
247 2x1g_F Cadmus; transport prote 94.1 1.2 4.1E-05 54.3 19.1 217 411-644 476-722 (971)
248 2fv2_A RCD1 required for cell 93.8 0.56 1.9E-05 45.6 11.8 178 460-642 73-266 (268)
249 3g39_A Variable lymphocyte rec 93.6 0.019 6.5E-07 53.8 1.2 12 154-165 76-87 (170)
250 2r9u_A Variable lymphocyte rec 93.6 0.019 6.6E-07 54.0 1.2 82 134-219 33-117 (174)
251 3ebb_A Phospholipase A2-activa 93.5 1.7 5.8E-05 44.4 15.6 153 360-515 105-264 (304)
252 3g39_A Variable lymphocyte rec 93.3 0.062 2.1E-06 50.2 4.3 105 110-222 11-117 (170)
253 2x19_B Importin-13; nuclear tr 93.3 16 0.00054 44.2 27.1 310 311-645 488-847 (963)
254 2x1g_F Cadmus; transport prote 92.9 0.9 3.1E-05 55.4 15.0 297 321-644 476-814 (971)
255 2of3_A ZYG-9; multifunctional 92.8 0.77 2.6E-05 45.7 11.6 144 263-426 88-234 (266)
256 4hat_C Exportin-1; heat repeat 92.8 22 0.00076 43.0 30.1 102 586-689 465-572 (1023)
257 3oc3_A Helicase MOT1, MOT1; re 92.5 0.32 1.1E-05 52.7 8.7 189 457-681 242-431 (800)
258 4ffb_C Protein STU2; tubulin f 92.5 1.3 4.3E-05 44.9 13.2 186 489-685 14-211 (278)
259 2fv2_A RCD1 required for cell 92.4 1.3 4.5E-05 43.1 11.9 145 503-654 74-234 (268)
260 3ibv_A Exportin-T; karyopherin 92.3 13 0.00045 44.8 23.9 102 586-692 455-572 (980)
261 3oc3_A Helicase MOT1, MOT1; re 91.7 1.9 6.5E-05 46.9 13.3 245 310-599 175-432 (800)
262 3ebb_A Phospholipase A2-activa 91.5 3.1 0.0001 42.4 14.5 155 531-688 104-265 (304)
263 3l9t_A Putative uncharacterize 91.4 2.2 7.7E-05 41.1 12.4 134 488-647 74-211 (240)
264 2ifg_A High affinity nerve gro 91.4 0.057 1.9E-06 57.2 1.6 82 104-191 27-112 (347)
265 4gt6_A Cell surface protein; l 90.7 0.14 5E-06 55.1 3.9 121 77-214 262-385 (394)
266 2f31_A Diaphanous protein homo 90.5 6.3 0.00022 38.4 15.4 149 352-504 38-218 (233)
267 1lsh_A Lipovitellin (LV-1N, LV 90.5 6.6 0.00023 47.9 18.7 177 486-689 393-579 (1056)
268 2of3_A ZYG-9; multifunctional 89.5 13 0.00045 36.8 16.6 173 361-557 49-234 (266)
269 1lsh_A Lipovitellin (LV-1N, LV 89.0 4.3 0.00015 49.5 15.4 171 441-644 392-576 (1056)
270 3eg5_B Protein diaphanous homo 88.9 9.6 0.00033 40.3 16.2 150 350-503 102-283 (383)
271 3c2g_A SYS-1 protein; beta-cat 88.8 7.5 0.00026 39.3 13.9 120 374-496 259-379 (619)
272 2ifg_A High affinity nerve gro 88.1 0.095 3.2E-06 55.4 0.0 60 106-169 54-116 (347)
273 4gt6_A Cell surface protein; l 87.6 0.18 6.1E-06 54.4 1.9 122 52-191 263-387 (394)
274 3l9t_A Putative uncharacterize 87.5 5.5 0.00019 38.4 11.8 133 312-475 74-210 (240)
275 1upk_A MO25 protein; transfera 87.3 27 0.00094 35.5 20.9 214 304-526 73-295 (341)
276 2f31_A Diaphanous protein homo 87.2 6 0.0002 38.6 12.4 145 483-633 42-217 (233)
277 3eg5_B Protein diaphanous homo 86.1 25 0.00084 37.1 17.3 154 296-460 96-282 (383)
278 2bnx_A Diaphanous protein homo 83.2 28 0.00095 36.8 16.2 144 357-503 46-221 (386)
279 4fs7_A Uncharacterized protein 82.9 0.5 1.7E-05 50.8 2.5 144 30-191 228-375 (394)
280 4fs7_A Uncharacterized protein 82.7 0.24 8.1E-06 53.4 -0.2 141 29-187 250-393 (394)
281 3u0r_A Apoptosis inhibitor 5; 82.0 3.6 0.00012 44.0 8.4 96 308-425 64-160 (507)
282 3a6p_A Exportin-5; exportin-5, 81.3 57 0.0019 40.4 20.5 284 322-645 26-381 (1204)
283 4hat_C Exportin-1; heat repeat 79.4 43 0.0015 40.5 18.0 216 310-559 17-263 (1023)
284 3c2g_A SYS-1 protein; beta-cat 79.3 39 0.0013 34.3 14.1 126 291-425 266-400 (619)
285 3u0r_A Apoptosis inhibitor 5; 78.6 8.3 0.00028 41.3 9.8 91 586-688 40-131 (507)
286 2bnx_A Diaphanous protein homo 78.3 41 0.0014 35.4 15.5 156 296-461 34-221 (386)
287 3ibv_A Exportin-T; karyopherin 77.5 1.3E+02 0.0044 36.1 25.6 189 312-517 43-263 (980)
288 4h09_A Hypothetical leucine ri 77.4 0.22 7.6E-06 53.3 -2.6 144 31-191 193-342 (379)
289 3gjx_A Exportin-1; transport, 75.6 73 0.0025 38.6 18.3 215 311-559 30-275 (1073)
290 3gjx_A Exportin-1; transport, 70.9 72 0.0025 38.7 16.7 218 401-644 30-275 (1073)
291 4h09_A Hypothetical leucine ri 70.2 1.4 4.8E-05 46.9 1.5 124 29-165 214-342 (379)
292 3ldz_A STAM-1, signal transduc 68.0 7.4 0.00025 34.4 5.5 73 309-387 42-114 (140)
293 3g2s_A C-terminal fragment of 66.6 12 0.00042 33.3 6.6 73 309-387 48-126 (149)
294 1mhq_A ADP-ribosylation factor 66.4 11 0.00039 33.5 6.4 73 309-387 38-116 (148)
295 1x5b_A Signal transducing adap 66.0 11 0.00038 34.2 6.4 73 309-387 52-125 (163)
296 3a6p_A Exportin-5; exportin-5, 63.5 1.9E+02 0.0066 35.6 19.0 208 411-644 25-276 (1204)
297 1juq_A ADP-ribosylation factor 59.9 15 0.00053 33.6 6.2 73 309-387 50-128 (171)
298 3qml_C Protein SLS1, nucleotid 53.6 1.7E+02 0.0058 29.3 12.7 147 533-685 25-188 (315)
299 3s4w_B Protein FACD2, fanconi 52.9 4E+02 0.014 32.7 22.4 301 312-644 160-507 (1323)
300 3ldz_A STAM-1, signal transduc 51.4 28 0.00095 30.6 6.2 69 359-427 43-113 (140)
301 3o2t_A Symplekin; heat repeat, 49.7 1.3E+02 0.0046 31.3 12.0 63 311-385 65-127 (386)
302 3zyq_A Hepatocyte growth facto 48.4 37 0.0013 32.7 7.1 72 530-603 45-118 (226)
303 3zyq_A Hepatocyte growth facto 48.4 19 0.00065 34.7 5.1 73 309-387 45-118 (226)
304 3qml_C Protein SLS1, nucleotid 48.0 2.3E+02 0.0077 28.4 13.1 136 412-557 41-187 (315)
305 1x5b_A Signal transducing adap 46.9 39 0.0013 30.6 6.6 69 359-427 53-124 (163)
306 3gs3_A Symplekin, LD45768P; he 45.4 58 0.002 32.0 8.0 72 297-385 46-117 (257)
307 3g2s_A C-terminal fragment of 44.8 49 0.0017 29.4 6.7 69 359-427 49-125 (149)
308 4atg_A TAF6; transcription, TF 43.0 1.4E+02 0.0048 27.8 9.8 134 312-471 14-161 (196)
309 1mhq_A ADP-ribosylation factor 42.6 44 0.0015 29.7 6.1 69 359-427 39-115 (148)
310 3gae_A Protein DOA1; UFD3, CDC 42.5 68 0.0023 31.4 8.1 142 445-604 61-218 (253)
311 1dvp_A HRS, hepatocyte growth 40.4 65 0.0022 30.8 7.5 72 530-603 42-115 (220)
312 1dvp_A HRS, hepatocyte growth 39.5 31 0.0011 33.1 5.0 73 309-387 42-115 (220)
313 1juq_A ADP-ribosylation factor 38.0 51 0.0018 30.0 6.0 69 359-427 51-127 (171)
314 1elk_A Target of MYB1; superhe 37.8 58 0.002 29.2 6.2 73 309-387 53-130 (157)
315 3gae_A Protein DOA1; UFD3, CDC 37.0 1.6E+02 0.0056 28.6 9.9 132 375-515 71-218 (253)
316 4atg_A TAF6; transcription, TF 36.1 1.9E+02 0.0066 26.8 9.6 114 401-514 42-162 (196)
317 2xpp_A IWS1, ECU08_0440; trans 33.0 2.5E+02 0.0086 24.6 9.2 79 521-603 52-136 (145)
318 3gs3_A Symplekin, LD45768P; he 32.8 3.5E+02 0.012 26.3 14.5 88 323-426 29-117 (257)
319 3nfq_A Transcription factor IW 26.0 3.6E+02 0.012 24.3 9.1 80 521-604 67-152 (170)
320 2lz0_A Uncharacterized protein 25.2 34 0.0012 28.0 2.2 12 180-191 41-52 (100)
321 1elk_A Target of MYB1; superhe 25.1 81 0.0028 28.2 4.9 74 530-603 53-130 (157)
322 1vsy_5 Proteasome activator BL 22.1 2.7E+02 0.0092 33.3 10.0 65 574-643 298-364 (997)
323 3pst_A Protein DOA1; protein d 21.7 3E+02 0.01 29.0 9.0 140 441-601 229-387 (425)
324 3rfe_A Platelet glycoprotein I 21.0 67 0.0023 27.6 3.4 33 135-167 32-66 (130)
325 3l3f_X Protein DOA1, DOA1/UFD3 20.9 3E+02 0.01 28.3 8.7 139 442-601 167-324 (362)
No 1
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=8.4e-36 Score=334.95 Aligned_cols=372 Identities=21% Similarity=0.264 Sum_probs=315.7
Q ss_pred HHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 048757 306 WLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANL 385 (864)
Q Consensus 306 ~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 385 (864)
|...+++.|+++|+++++++|..|+++|.+++..+++ .+..+.+.|+||+|+++|++++++++..|+++|++|
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~-------~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nL 117 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDK-------VKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNI 117 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-------HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-------HHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 4556699999999999999999999999999976654 468899999999999999999999999999999999
Q ss_pred hC--CchhHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcc-----------
Q 048757 386 SV--DSKVAKAVSENGGIDILADLARS-TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFK----------- 451 (864)
Q Consensus 386 ~~--~~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~----------- 451 (864)
+. +++++..|++.|+|++|+++|++ .+.++++.++.+|++|+.+++++..|++ +++++|++++..
T Consensus 118 a~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~ 196 (584)
T 3l6x_A 118 SFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNE 196 (584)
T ss_dssp TSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC-----
T ss_pred HccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccc
Confidence 98 48999999999999999999987 6889999999999999999999999996 579999998721
Q ss_pred ----cCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCc-HHHHHHHHHcc-----CchhHHHHHHHHHHHHhhcCC---
Q 048757 452 ----WSSWNDGVLERAAGALANLAADDK-CSLEVARAGG-VHALVMLARSF-----MFEGVQEQAARALANLVAHGD--- 517 (864)
Q Consensus 452 ----~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~-i~~Lv~ll~~~-----~~~~v~~~a~~aL~~L~~~~~--- 517 (864)
.+..++++++.|+++|.||+..++ .+..+++.++ ++.|+.++++. .+...++.|+++|+||+...+
T Consensus 197 ~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~ 276 (584)
T 3l6x_A 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREI 276 (584)
T ss_dssp -----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHS
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccc
Confidence 013457999999999999999876 5888887554 68999999853 346788999999999996410
Q ss_pred -------------------CCcccchhhhccChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCCh-----hhHHHHHHCCC
Q 048757 518 -------------------SNSNNAAVGLETGALEALVQLTF-SKHEGVRQEAAGALWNLSFDD-----RNREAIAAAGG 572 (864)
Q Consensus 518 -------------------~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~~-----~~~~~i~~~~~ 572 (864)
..+.....+...++++.|+.+|. +.++.+++.|+++|+||+... ..+..+.+.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~g 356 (584)
T 3l6x_A 277 PQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKA 356 (584)
T ss_dssp TTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHH
T ss_pred cchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCc
Confidence 01112234455677888999995 568999999999999998753 23445555788
Q ss_pred hHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccC--------CHHHHHHHHHHHHHhcC
Q 048757 573 VEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSA--------VVDVHETAAGALWNLAF 644 (864)
Q Consensus 573 i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~--------~~~v~~~a~~aL~~L~~ 644 (864)
++.|+++|.+ +++.++..|+++|+||+.++.++..| ..|+++.|+.+|.++ .++++..|+++|.|++.
T Consensus 357 lp~Lv~LL~s---~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 357 LSAIADLLTN---EHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHGGGC---SCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 9999999997 89999999999999999998888777 678999999999876 46889999999999965
Q ss_pred -CcccHHHHHhCCcHHHHHHHhcCC-CcHHHHHHHHHHHHHhhcCCc
Q 048757 645 -NPGNALCIVEGGGVQALIHLCSSS-LSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 645 -~~~~~~~i~~~g~v~~L~~ll~~~-~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+++++..|.+.|+|+.|++++.++ ..+.++..|+++|.+|.....
T Consensus 433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 788999999999999999999885 358899999999999986544
No 2
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=9.4e-36 Score=345.45 Aligned_cols=439 Identities=18% Similarity=0.168 Sum_probs=350.7
Q ss_pred HHHHHhhc-HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHH
Q 048757 303 DDFWLRQG-ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKA 381 (864)
Q Consensus 303 ~~~~~~~g-v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~ 381 (864)
..++..+| ++.|+.++.++++.+++.|.+++++++.+. ..+..+.+.|+ +.|+.+++++++.++..|+.+
T Consensus 283 ~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~--------~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~ 353 (810)
T 3now_A 283 NQVVAREGILQMILAMATTDDELQQRVACECLIAASSKK--------DKAKALCEQGV-DILKRLYHSKNDGIRVRALVG 353 (810)
T ss_dssp HHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSH--------HHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCc--------HHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHH
Confidence 34444555 999999999999999999999999977442 24677777775 999999999999999999999
Q ss_pred HHHHhCCc--hhHHHHHhcCcH----HHHHHHHccC--CHHHHHHHHHHHHHhcCCCCcHHHHH-hhCcHHHHHHHHccc
Q 048757 382 IANLSVDS--KVAKAVSENGGI----DILADLARST--NRLVAEEVVGGLWNLSVGEDHKGAIA-RAGGIKALVDLIFKW 452 (864)
Q Consensus 382 L~~L~~~~--~~~~~i~~~g~i----~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~~~~~~i~-~~g~i~~L~~lL~~~ 452 (864)
|++++.+. +......+.|++ +.++++|.++ ++++++.|+++|.+|+.+++.+..++ +.|++|.|++++.
T Consensus 354 L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~-- 431 (810)
T 3now_A 354 LCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLAR-- 431 (810)
T ss_dssp HHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHH--
T ss_pred HHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhC--
Confidence 99997532 233234445654 4567777776 88999999999999999999999988 5799999999997
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCc-c-----------------------------h---HHHHhcCcHHHHHHHHHccCch
Q 048757 453 SSWNDGVLERAAGALANLAADDK-C-----------------------------S---LEVARAGGVHALVMLARSFMFE 499 (864)
Q Consensus 453 ~~~~~~v~~~a~~~L~~L~~~~~-~-----------------------------~---~~i~~~~~i~~Lv~ll~~~~~~ 499 (864)
+++..++..|+++|.||+...+ . + +.+++.|++|.|+.+++++ ++
T Consensus 432 -s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~-s~ 509 (810)
T 3now_A 432 -GGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE-SH 509 (810)
T ss_dssp -TTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC-CH
T ss_pred -CCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC-CH
Confidence 3678899999999999998542 1 1 5778999999999999984 69
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHH---HHCCChHHH
Q 048757 500 GVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAI---AAAGGVEAL 576 (864)
Q Consensus 500 ~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i---~~~~~i~~L 576 (864)
.+++.|+++|.||+. +++++..+.+.|++++|+.+|.+.++..++.|+++|.+|+.+.+....+ ...+++++|
T Consensus 510 ~vqe~Aa~aL~NLA~----d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppL 585 (810)
T 3now_A 510 NSQELIARVLNAVCG----LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPL 585 (810)
T ss_dssp HHHHHHHHHHHHHHT----SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHH
Confidence 999999999999996 5678999999999999999999999999999999999998653222111 113599999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHh-
Q 048757 577 VALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVE- 654 (864)
Q Consensus 577 v~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~- 654 (864)
+++|.+ ..+...+..|+++|.||+.. ++++..+.+.|++++|+.+|.++++.++..|+++|+||+.+++.+..+.+
T Consensus 586 v~LL~~--~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~ 663 (810)
T 3now_A 586 LNLLQQ--DCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGN 663 (810)
T ss_dssp HHTTST--TSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSS
T ss_pred HHHhCC--CCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhc
Confidence 999975 23556677899999999987 68889999999999999999999999999999999999999888888885
Q ss_pred CCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceeeecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhH
Q 048757 655 GGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIASIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIED 734 (864)
Q Consensus 655 ~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~ 734 (864)
.|+++.|+.++.+++ ..+|..|+|+|+++..+++.. .+.+.+. .| ++++
T Consensus 664 ~g~l~~Lv~LL~s~d-~~vq~~Aa~ALanLt~~s~~~------------------------~~~ii~~-~g-----~I~~ 712 (810)
T 3now_A 664 NDRVKFLALLCEDED-EETATACAGALAIITSVSVKC------------------------CEKILAI-AS-----WLDI 712 (810)
T ss_dssp SSHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHCHHH------------------------HHHHHTS-TT-----HHHH
T ss_pred cCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCHHH------------------------HHHHHHH-cC-----CHHH
Confidence 789999999999875 889999999999998865521 1111111 12 3555
Q ss_pred HH---HhccChhhHHHHhhccchhHHhccc-----cccCcccccccccchhhHHHHHHHhcCC---cHHHHHHHHHHHHh
Q 048757 735 FV---RSFSDPQAFATALASAVPKSLAQIT-----EGARIPEAAHLRCSGAEIGRFVSMLRNP---SSILKACAAVALLQ 803 (864)
Q Consensus 735 l~---~~~~~~~~~~~a~~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~i~~lv~~l~~~---~~~~~~~Aa~al~~ 803 (864)
++ .+.++..++.++. ++.++. ....+.+.| ++++|+++++.+ ++++.+.|..+|.+
T Consensus 713 Lv~LL~s~d~~vq~~A~~------aL~NL~~~s~e~~~~l~e~G-------~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ 779 (810)
T 3now_A 713 LHTLIANPSPAVQHRGIV------IILNMINAGEEIAKKLFETD-------IMELLSGLGQLPDDTRAKAREVATQCLAA 779 (810)
T ss_dssp HHHHHTCSSHHHHHHHHH------HHHHHHTTCHHHHHHHHTST-------HHHHHTTSCCCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHH------HHHHHHhCCHHHHHHHHHCC-------CHHHHHHHHhCcccCcHHHHHHHHHHHHH
Confidence 55 3444444444444 333333 234455556 999999999765 79999999999944
Q ss_pred h
Q 048757 804 F 804 (864)
Q Consensus 804 ~ 804 (864)
+
T Consensus 780 l 780 (810)
T 3now_A 780 A 780 (810)
T ss_dssp H
T ss_pred H
Confidence 4
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-35 Score=342.36 Aligned_cols=467 Identities=19% Similarity=0.164 Sum_probs=360.0
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHH
Q 048757 316 SLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAV 395 (864)
Q Consensus 316 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i 395 (864)
..+...+.+-...|++++.++..+..+. ....+...|+++.++.++.++++.++..|++++++++.+++.|..+
T Consensus 254 ~~~~~~~~~~~~~a~~alt~i~~g~~~~------~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I 327 (810)
T 3now_A 254 DKLLAPDMESKVRVTVAITALLNGPLDV------GNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKAL 327 (810)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHSSSHHH------HHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTT
T ss_pred HHhccCChHhHHHHHHHHHHHhcCCHHH------HHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3456677888899999999998666432 2234558899999999999999999999999999999999999999
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--CcHHHHHhhCc----HHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 048757 396 SENGGIDILADLARSTNRLVAEEVVGGLWNLSVGE--DHKGAIARAGG----IKALVDLIFKWSSWNDGVLERAAGALAN 469 (864)
Q Consensus 396 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~----i~~L~~lL~~~~~~~~~v~~~a~~~L~~ 469 (864)
.+.|+ +.|+.+++++++.++..|+.+|++++... +......+.|+ ++.++++|.+ +..+.++++.|+++|.+
T Consensus 328 ~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~-~~~d~~v~~~AveaLay 405 (810)
T 3now_A 328 CEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIK-PGKDKDIRRWAADGLAY 405 (810)
T ss_dssp HHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHC-SSCCSSHHHHHHHHHHH
T ss_pred HHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHH
Confidence 99875 99999999999999999999999997522 22222333455 4556667753 11267899999999999
Q ss_pred hcCCCcchHHHH-hcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc--------------------------cc
Q 048757 470 LAADDKCSLEVA-RAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNS--------------------------NN 522 (864)
Q Consensus 470 L~~~~~~~~~i~-~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~--------------------------~~ 522 (864)
|+.+++.+..++ +.|++|.|+.+++++ ++.++..|+++|.||+...+... ..
T Consensus 406 LS~~~~vk~~lv~d~g~Ip~LV~LL~s~-d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v 484 (810)
T 3now_A 406 LTLDAECKEKLIEDKASIHALMDLARGG-NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI 484 (810)
T ss_dssp HTTSHHHHHHHHHCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred HhCCcHHHHHHHHccchHHHHHHHhCCC-ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence 999999888877 578999999999984 68899999999999998532110 11
Q ss_pred c---hhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 048757 523 A---AVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALW 599 (864)
Q Consensus 523 ~---~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~ 599 (864)
+ +.+++.|++|.|+.++.++++.+++.|+++|.||+.++++|..+++.|++++|+.+|.+ +++..++.|+++|.
T Consensus 485 ~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s---~~~~~k~~Aa~AL~ 561 (810)
T 3now_A 485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE---GTEKGKRHATQALA 561 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc---CCHHHHHHHHHHHH
Confidence 2 57788999999999999999999999999999999999999999999999999999997 88999999999999
Q ss_pred HhccCchhhHHhh---hcCCHHHHHHHHccCC-HHHHHHHHHHHHHhcCC-cccHHHHHhCCcHHHHHHHhcCCCcHHHH
Q 048757 600 GLSLSEANSIAIG---REGGVAPLIALARSAV-VDVHETAAGALWNLAFN-PGNALCIVEGGGVQALIHLCSSSLSKMAR 674 (864)
Q Consensus 600 ~L~~~~~~~~~i~---~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~~~~~~r 674 (864)
+++.+......+. ..+++++|+.+|.++. ...+..|+++|.||+.. ++++..++++|+++.|++++.+++ +.+|
T Consensus 562 nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~-~~Vq 640 (810)
T 3now_A 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-LYLT 640 (810)
T ss_dssp HHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC-TTHH
T ss_pred HHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHH
Confidence 9987532222221 2469999999998653 34557899999999986 467889999999999999999876 7899
Q ss_pred HHHHHHHHHhhcCCccceeeecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChhhHHHHhhccch
Q 048757 675 FMAALALAYIVDGRMEDIASIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQAFATALASAVP 754 (864)
Q Consensus 675 ~~aa~aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~~~~~a~~~~a~ 754 (864)
..|+++++|++.+.... ..+. .+.| .++.+..++.+.....+++++. +.+.
T Consensus 641 ~~A~~~L~NLa~~~~~~-------------------------~~~v-~~~g--~l~~Lv~LL~s~d~~vq~~Aa~-ALan 691 (810)
T 3now_A 641 RAAAQCLCNLVMSEDVI-------------------------KMFE-GNND--RVKFLALLCEDEDEETATACAG-ALAI 691 (810)
T ss_dssp HHHHHHHHHHTTSHHHH-------------------------HHHH-SSSS--HHHHHHHGGGCSSHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHhCChHHH-------------------------HHHH-hccC--cHHHHHHHhcCCCHHHHHHHHH-HHHH
Confidence 99999999998764310 1111 1122 1222333334433333444443 3333
Q ss_pred hHHhccccccCccc-ccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCcchhhhhhhhhhcChhhHHHHhhh
Q 048757 755 KSLAQITEGARIPE-AAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPGGQHSMHHTNLLQNVGAPRVLQSTAA 833 (864)
Q Consensus 755 ~~l~~~~~~~~~~~-~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 833 (864)
++-+.......+.+ .| +|++|+++|+++++++|..|+|+|.|++..+. ..+..+.+.|+.+.|..+..
T Consensus 692 Lt~~s~~~~~~ii~~~g-------~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~----e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 692 ITSVSVKCCEKILAIAS-------WLDILHTLIANPSPAVQHRGIVIILNMINAGE----EIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHHHCHHHHHHHHTSTT-------HHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH----HHHHHHHTSTHHHHHTTSCC
T ss_pred HhCCCHHHHHHHHHHcC-------CHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH----HHHHHHHHCCCHHHHHHHHh
Confidence 33332222233333 55 89999999999999999999999999976322 34567888899999999875
Q ss_pred hh
Q 048757 834 AA 835 (864)
Q Consensus 834 ~~ 835 (864)
.+
T Consensus 761 ~~ 762 (810)
T 3now_A 761 LP 762 (810)
T ss_dssp CT
T ss_pred Cc
Confidence 54
No 4
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.3e-34 Score=334.80 Aligned_cols=472 Identities=22% Similarity=0.215 Sum_probs=374.7
Q ss_pred hhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHH-hCCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 048757 308 RQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILR-HGGVRLLLDLARS-PPEGLQSEVAKAIANL 385 (864)
Q Consensus 308 ~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L 385 (864)
.++++.|+++|+++++.+|..|+.+|++++..++ .+..+.. .|+++.|+++|.+ ++++++..++.+|++|
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~--------~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA--------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH--------HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc--------cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4559999999999999999999999999986543 2344543 5899999999975 4899999999999999
Q ss_pred hCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 386 SVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 386 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
+.+++++..+.+.|+++.|+++++++++.++..|+++|++++.+ ++.+..+.+.|+++.|++++.+ ++..++..++
T Consensus 88 s~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~---~~~~~~~~~~ 164 (529)
T 1jdh_A 88 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAITT 164 (529)
T ss_dssp TTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC---CCHHHHHHHH
T ss_pred HcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc---CCHHHHHHHH
Confidence 99999999999999999999999999999999999999999885 5778888899999999999974 6789999999
Q ss_pred HHHHHhcCCC-cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCC
Q 048757 465 GALANLAADD-KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKH 543 (864)
Q Consensus 465 ~~L~~L~~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 543 (864)
.+|.+++..+ +.+..+.+.|+++.|+.++++++.+..+..+..+|.+++. .+..+..+.+.|+++.|++++.+.+
T Consensus 165 ~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~g~~~~L~~ll~~~~ 240 (529)
T 1jdh_A 165 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV----CSSNKPAIVEAGGMQALGLHLTDPS 240 (529)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT----STTHHHHHHHTTHHHHHHTTTTSSC
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc----CcccHHHHHHCCCHHHHHHHHhCCC
Confidence 9999999864 5888899999999999999998777888889999999997 5667888999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHH
Q 048757 544 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIA 622 (864)
Q Consensus 544 ~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~ 622 (864)
++++..++++|.+++....... ...++++.|++++.+ ++++++..|+++|++++.. ++.+..+.+.|+++.|++
T Consensus 241 ~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ 315 (529)
T 1jdh_A 241 QRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315 (529)
T ss_dssp HHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Confidence 9999999999999988753321 113578999999986 8999999999999999987 578999999999999999
Q ss_pred HHcc--CCHHHHHHHHHHHHHhcCC-cc---cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceeeec
Q 048757 623 LARS--AVVDVHETAAGALWNLAFN-PG---NALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIASIG 696 (864)
Q Consensus 623 lL~~--~~~~v~~~a~~aL~~L~~~-~~---~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~~~ 696 (864)
+|.+ .++.++..|+++|+|++.+ +. .+..+.+.|+++.|++++.+++++.++..++++|+++..+....
T Consensus 316 ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~----- 390 (529)
T 1jdh_A 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH----- 390 (529)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-----
T ss_pred HHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-----
Confidence 9975 3479999999999999874 33 46789999999999999998876789999999999998764411
Q ss_pred ccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHH---hccChhhHHHHhhc----------------cchhHH
Q 048757 697 SSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVR---SFSDPQAFATALAS----------------AVPKSL 757 (864)
Q Consensus 697 ~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~---~~~~~~~~~~a~~~----------------~a~~~l 757 (864)
.. + .+ .| .+++++. ......+++++.++ .++.++
T Consensus 391 ------------~~-----~---~~--~~-----~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al 443 (529)
T 1jdh_A 391 ------------AP-----L---RE--QG-----AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGAL 443 (529)
T ss_dssp ------------HH-----H---HH--TT-----HHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHH
T ss_pred ------------HH-----H---HH--cC-----CHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHH
Confidence 00 0 00 11 1222221 11111111111100 112233
Q ss_pred hcccc----ccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCcchhhhhhhhhhcChhhHHHHhhh
Q 048757 758 AQITE----GARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPGGQHSMHHTNLLQNVGAPRVLQSTAA 833 (864)
Q Consensus 758 ~~~~~----~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 833 (864)
.++.. ...+.+.| ++++|++++.++++.++..|+++|.++... . .....+.+.|+.+.|..+..
T Consensus 444 ~~L~~~~~~~~~l~~~~-------~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~---~--~~~~~i~~~~~~~~L~~l~~ 511 (529)
T 1jdh_A 444 HILARDVHNRIVIRGLN-------TIPLFVQLLYSPIENIQRVAAGVLCELAQD---K--EAAEAIEAEGATAPLTELLH 511 (529)
T ss_dssp HHHTTSHHHHHHHHHTT-------CHHHHHHGGGCSCHHHHHHHHHHHHHHTTS---H--HHHHHHHHTTCHHHHHHGGG
T ss_pred HHHhcCchHHHHHhccC-------CccHHHHHHcCCchHHHHHHHHHHHHHhcC---H--HHHHHHHHcCChHHHHHHhc
Confidence 33321 12233344 889999999999999999999999998632 1 23445677888889998877
Q ss_pred hhccchhHHH
Q 048757 834 AAIAPVEAKI 843 (864)
Q Consensus 834 ~~~~~~~~~~ 843 (864)
+.++.+.-++
T Consensus 512 ~~~~~v~~~a 521 (529)
T 1jdh_A 512 SRNEGVATYA 521 (529)
T ss_dssp CSSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7666654443
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=4e-34 Score=326.65 Aligned_cols=361 Identities=19% Similarity=0.203 Sum_probs=315.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC-C
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV-D 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~-~ 388 (864)
++.+++.+++.|++.|..|+..++.|.....+. ..+.+++.|++|+|+++|++ +++.+|..|+++|+||+. +
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~p------pi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~ 132 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQP------PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCC------CHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC
Confidence 789999999999999999999999976554432 24779999999999999975 568999999999999987 6
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccC--CCCHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWS--SWNDGVLERAAG 465 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~v~~~a~~ 465 (864)
++.+..+++.|+||.|+++|+++++.+++.|+++|+||+.+ ++.+..+.+.|++++|+.++.... .....++..+++
T Consensus 133 ~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 78999999999999999999999999999999999999875 678999999999999999997521 123467789999
Q ss_pred HHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCH
Q 048757 466 ALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHE 544 (864)
Q Consensus 466 ~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 544 (864)
++.+++.... ........++++.|+.++.+. +++++..++++|.+|+.. +.+....+.+.|+++.|+.+|.+.+.
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~---~~~~~~~i~~~g~i~~Lv~lL~~~~~ 288 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGATEL 288 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSS---CHHHHHHHHTTTCHHHHHHHHTCSCH
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhc---hhhhHHHHHhcccchhhhhhhcCCCh
Confidence 9999998765 334444567899999999884 689999999999999975 45666788899999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHH
Q 048757 545 GVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIA 622 (864)
Q Consensus 545 ~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~ 622 (864)
.++..++++|+|++.. +..+..+.+.|+++.|+.+|.+ +++.++..|+++|+|++.. +..+..+.+.|++++|+.
T Consensus 289 ~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~ 365 (510)
T 3ul1_B 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVG 365 (510)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred hhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC---CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHH
Confidence 9999999999999776 5678888999999999999986 8999999999999999976 677788889999999999
Q ss_pred HHccCCHHHHHHHHHHHHHhcC--CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 623 LARSAVVDVHETAAGALWNLAF--NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 623 lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
++++++.+++..|+++|+|++. +++....+++.|+++.|+++|.+++ +.++..+.++|.++.
T Consensus 366 lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 366 VLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNIF 429 (510)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 9999999999999999999987 5566778999999999999999886 778888888887653
No 6
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=5.7e-34 Score=329.39 Aligned_cols=456 Identities=21% Similarity=0.232 Sum_probs=355.5
Q ss_pred HHHHh-hcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHH
Q 048757 304 DFWLR-QGATLLLSLMES-SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKA 381 (864)
Q Consensus 304 ~~~~~-~gv~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~ 381 (864)
.++.. ++++.|+++|++ ++++++..|+.+|.+|+..++ .+..+.+.|+++.|+++|+++++.++..++++
T Consensus 53 ~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~--------~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~ 124 (529)
T 1jdh_A 53 AIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--------GLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 124 (529)
T ss_dssp HHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHH--------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCch--------hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 33433 459999999975 489999999999999986543 46778899999999999999999999999999
Q ss_pred HHHHhCC-chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHH
Q 048757 382 IANLSVD-SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGV 459 (864)
Q Consensus 382 L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v 459 (864)
|++++.+ ++.+..+.+.|+++.|+++++++++.++..++.+|.+++. +++++..+.+.|+++.|++++++ ......
T Consensus 125 L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~--~~~~~~ 202 (529)
T 1jdh_A 125 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKL 202 (529)
T ss_dssp HHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH--CCCHHH
T ss_pred HHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh--CChHHH
Confidence 9999985 6788889999999999999999999999999999999987 57889999999999999999986 456778
Q ss_pred HHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHh
Q 048757 460 LERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539 (864)
Q Consensus 460 ~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL 539 (864)
++.+..+|++++..++.+..+.+.|+++.|+.++.++ +++++..++++|.+++..... .. ...++++.|++++
T Consensus 203 ~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~----~~--~~~~~i~~L~~ll 275 (529)
T 1jdh_A 203 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK----QE--GMEGLLGTLVQLL 275 (529)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS-CHHHHHHHHHHHHHHHTTCTT----CS--CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC-ChHHHHHHHHHHHHHhcCChh----hH--HHHhHHHHHHHHH
Confidence 8889999999999888999999999999999999885 689999999999999985321 11 2348899999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-ch---hhHHhhhc
Q 048757 540 FSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EA---NSIAIGRE 614 (864)
Q Consensus 540 ~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~---~~~~i~~~ 614 (864)
.+++++++..|+++|++|+.. ++.+..+.+.|+++.|++++.+. +.++.++..|+++|++++.. ++ .+..+.+.
T Consensus 276 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~ 354 (529)
T 1jdh_A 276 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354 (529)
T ss_dssp TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc-CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHc
Confidence 999999999999999999987 56899999999999999999851 23489999999999999875 22 57788999
Q ss_pred CCHHHHHHHHccCC-HHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHH--hhcCCccc
Q 048757 615 GGVAPLIALARSAV-VDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAY--IVDGRMED 691 (864)
Q Consensus 615 ~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~--l~~~~~~~ 691 (864)
|++++|+++|++++ +.++..|+++|+|++.++.++..+.+.|+++.|++++.+++ +.+|..|+|++.+ +..+..
T Consensus 355 ~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~v~~~a~~~l~n~~~~~~~~-- 431 (529)
T 1jdh_A 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGVR-- 431 (529)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH-HHHC-----------CBTTBC--
T ss_pred CChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHh-HHHHHHHhcccCchhhhcccc--
Confidence 99999999999876 59999999999999999999999999999999999998764 7899999999988 332211
Q ss_pred eeeecccccCCCcccchHHHHHHHHHHHHhhccc--cc-chhhhhHHHHhc--cChhhHHHHhhccchhHHhccc----c
Q 048757 692 IASIGSSLEGTSESENLDVIRRMALKHIEDFCAG--RI-ALKHIEDFVRSF--SDPQAFATALASAVPKSLAQIT----E 762 (864)
Q Consensus 692 ~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g--~~-~~~~i~~l~~~~--~~~~~~~~a~~~~a~~~l~~~~----~ 762 (864)
...+....+ .++..+...... .+ ...++++++.-. .++.++..+. . +++++. .
T Consensus 432 -----------~~~i~~~~~--~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~--~---~l~~l~~~~~~ 493 (529)
T 1jdh_A 432 -----------MEEIVEGCT--GALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA--G---VLCELAQDKEA 493 (529)
T ss_dssp -----------HHHHHHHHH--HHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH--H---HHHHHTTSHHH
T ss_pred -----------HHHHHHHHH--HHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHH--H---HHHHHhcCHHH
Confidence 011111111 333333221100 00 012355555422 2333333322 2 333332 1
Q ss_pred ccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 048757 763 GARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFT 805 (864)
Q Consensus 763 ~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~ 805 (864)
...+.+.| ++++|.+++.+++++++..|+++|.+++
T Consensus 494 ~~~i~~~~-------~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 494 AEAIEAEG-------ATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp HHHHHHTT-------CHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHcC-------ChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 22333444 8999999999999999999999997763
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.4e-34 Score=323.14 Aligned_cols=368 Identities=22% Similarity=0.259 Sum_probs=313.9
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-
Q 048757 310 GATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD- 388 (864)
Q Consensus 310 gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~- 388 (864)
.+|.|+++|+++++++|..|+.+|.+++..+++ .+..+.+.|++|.|+++|+++++.++..|+++|.+|+.+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-------~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-------AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-------HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 379999999999999999999999999976654 356799999999999999999999999999999999985
Q ss_pred chhHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc------CC-------
Q 048757 389 SKVAKAVSENGGIDILADLAR-STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW------SS------- 454 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~------~~------- 454 (864)
++++..+++.|++|+|+++|+ ++++++++.|+++|+||+.+++++..+.+ |++++|++++... ..
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~ 154 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREV 154 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------C
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhccc
Confidence 899999999999999999998 88999999999999999999999999999 9999999999320 01
Q ss_pred CCHHHHHHHHHHHHHhcCCCcchHHHHhc-CcHHHHHHHHHcc-----CchhHHHHHHHHHHHHhhcC------------
Q 048757 455 WNDGVLERAAGALANLAADDKCSLEVARA-GGVHALVMLARSF-----MFEGVQEQAARALANLVAHG------------ 516 (864)
Q Consensus 455 ~~~~v~~~a~~~L~~L~~~~~~~~~i~~~-~~i~~Lv~ll~~~-----~~~~v~~~a~~aL~~L~~~~------------ 516 (864)
.+.+++..|+++|+||+.+++++..+.+. |+++.|+.+++++ .+..+.+.++++|++|+...
T Consensus 155 ~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 155 VDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 34677789999999999987788889887 9999999999862 23567888999999987310
Q ss_pred -----------------------------------CCCcccchhhhccChHHHHHHHhcC-CCHHHHHHHHHHHHHhcCC
Q 048757 517 -----------------------------------DSNSNNAAVGLETGALEALVQLTFS-KHEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 517 -----------------------------------~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~Ls~~ 560 (864)
...+.....+.+.++++.|+.+|.+ .++.+++.|+++|+||+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0012233456778899999999875 4789999999999999975
Q ss_pred hh-----h-HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCC------
Q 048757 561 DR-----N-REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAV------ 628 (864)
Q Consensus 561 ~~-----~-~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~------ 628 (864)
.. . +..+.+.|+++.|+++|.+ ++++++..|+++|.+++.+++++..+.+ +++++|+++|.+++
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~---~~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~ 390 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQS---GNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNS 390 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhC---CCHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCc
Confidence 32 2 3334468999999999997 8999999999999999999888877665 79999999998764
Q ss_pred HHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 629 VDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 629 ~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+++...++++|.++.. +++....+.+.|+++.|++++.++.++.++..|++.|.++...++
T Consensus 391 ~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 4688899999999976 667788999999999999999988348899999999999886654
No 8
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.8e-34 Score=324.12 Aligned_cols=363 Identities=23% Similarity=0.281 Sum_probs=302.4
Q ss_pred HhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CCc
Q 048757 356 RHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG--EDH 432 (864)
Q Consensus 356 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~ 432 (864)
..+.++.|+++|++++++++..|+++|.+++. +++++..+++.|+||+|+++|+++++.+++.|+++|+||+.. +++
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 47889999999999999999999999999997 789999999999999999999999999999999999999984 799
Q ss_pred HHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHH-----------------c
Q 048757 433 KGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLAR-----------------S 495 (864)
Q Consensus 433 ~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~-----------------~ 495 (864)
+..|++.|+|++|+++|.. ..+.++++.++++|++|+..++++..+++ ++++.|++++. +
T Consensus 126 k~~I~~~GaIp~LV~LL~s--~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRK--ARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHH--CCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHcCCHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 9999999999999999985 45788999999999999998889988885 57999999872 1
Q ss_pred cCchhHHHHHHHHHHHHhhcCCCCcccchhhhc-cChHHHHHHHhcC------CCHHHHHHHHHHHHHhcCChhhH----
Q 048757 496 FMFEGVQEQAARALANLVAHGDSNSNNAAVGLE-TGALEALVQLTFS------KHEGVRQEAAGALWNLSFDDRNR---- 564 (864)
Q Consensus 496 ~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~-~~~i~~L~~lL~~------~~~~v~~~a~~~L~~Ls~~~~~~---- 564 (864)
..+++++++|+++|+||+.. +++.|..+++ .|+++.|+.++++ .+...++.|+++|+||+...+..
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~---~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~ 279 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSE---RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSS---CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTC
T ss_pred cccHHHHHHHHHHHHHHhcC---CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccch
Confidence 22478999999999999985 4556777766 5777899999874 46678999999999998763110
Q ss_pred ----------------------HHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc-----hhhHHhhhcCCH
Q 048757 565 ----------------------EAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE-----ANSIAIGREGGV 617 (864)
Q Consensus 565 ----------------------~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~-----~~~~~i~~~~~i 617 (864)
+.+...++++.|+.+|.. +.++.+++.|+++|+||+... .++..+.+++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~--s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~gl 357 (584)
T 3l6x_A 280 ERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKE--SKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKAL 357 (584)
T ss_dssp CC--------------CCCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHH
T ss_pred hhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcH
Confidence 011122346778999976 368999999999999998652 345566778999
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCC-------cHHHHHHHHHHHHHhhcCCcc
Q 048757 618 APLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSL-------SKMARFMAALALAYIVDGRME 690 (864)
Q Consensus 618 ~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~-------~~~~r~~aa~aL~~l~~~~~~ 690 (864)
+.|+++|+++++.++..|+++|+||+.++.++..| +.|+++.|+++|.+++ ++.+...|+++|+|+..++++
T Consensus 358 p~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~ 436 (584)
T 3l6x_A 358 SAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE 436 (584)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999877 6799999999998763 356777888888877665541
Q ss_pred ceeeecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChhhHHHHhhccchhHHhccccccCccccc
Q 048757 691 DIASIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQAFATALASAVPKSLAQITEGARIPEAA 770 (864)
Q Consensus 691 ~~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~ 770 (864)
. ...+.+.|
T Consensus 437 ~-----------------------------------------------------------------------~~~I~~~g 445 (584)
T 3l6x_A 437 A-----------------------------------------------------------------------AKKLRETQ 445 (584)
T ss_dssp H-----------------------------------------------------------------------HHHHHHTT
T ss_pred H-----------------------------------------------------------------------HHHHHHCC
Confidence 1 01112445
Q ss_pred ccccchhhHHHHHHHhcCC--cHHHHHHHHHHHHhhc
Q 048757 771 HLRCSGAEIGRFVSMLRNP--SSILKACAAVALLQFT 805 (864)
Q Consensus 771 ~~~~~~~~i~~lv~~l~~~--~~~~~~~Aa~al~~~~ 805 (864)
+|++|+.+++++ ++..++.|+++|.++.
T Consensus 446 -------~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 446 -------GIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp -------HHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred -------ChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 899999999987 8999999999997774
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.4e-33 Score=320.93 Aligned_cols=361 Identities=20% Similarity=0.210 Sum_probs=316.3
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC-
Q 048757 310 GATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV- 387 (864)
Q Consensus 310 gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~- 387 (864)
.++.+++.++++|++.+..|+..+..+.....+. ..+.+.+.|++|.|+++|+. +++.++..|+++|++++.
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~------~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~ 150 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQP------PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASG 150 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCC------CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCc------hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999876544332 24678999999999999965 668999999999999988
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccC--CCCHHHHHHHH
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWS--SWNDGVLERAA 464 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~v~~~a~ 464 (864)
+++.+..+++.|++|.|+.+|.++++.+++.|+++|+||+. +++++..+.+.|++++|+.++.... .....++..++
T Consensus 151 ~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 56788899999999999999999999999999999999987 4688999999999999999997521 12346788999
Q ss_pred HHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCC
Q 048757 465 GALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKH 543 (864)
Q Consensus 465 ~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 543 (864)
++|.+++.+.. ........+++|.|+.++.+. +++++..++++|.+++.. ..+....+.+.|+++.|+.+|.+++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~---~~~~~~~v~~~g~i~~Lv~lL~~~~ 306 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDG---PNERIEMVVKKGVVPQLVKLLGATE 306 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSS---CHHHHHHHHTTTCHHHHHHHHTCSC
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhh---hhhhHHHHHhccchHHHHHHhcCCC
Confidence 99999998765 334444567899999999884 689999999999999985 4566778889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHH
Q 048757 544 EGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLI 621 (864)
Q Consensus 544 ~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv 621 (864)
..++..++.+|+|++.. +..+..+.+.|+++.|+.+|.+ +++.++..|+++|+|++.. +..+..+.+.|++++|+
T Consensus 307 ~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~---~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv 383 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN---PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV 383 (529)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC---SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC---CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHH
Confidence 99999999999999876 5678889999999999999987 8999999999999999986 66778888999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcC--CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 048757 622 ALARSAVVDVHETAAGALWNLAF--NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYI 684 (864)
Q Consensus 622 ~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l 684 (864)
.+|++++.+++..|+++|+|++. +++....+++.|++++|+++|.+++ +.++..+..+|.++
T Consensus 384 ~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d-~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 384 GVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TKIIQVILDAISNI 447 (529)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence 99999999999999999999986 5566778999999999999999886 77888888888765
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=9.9e-35 Score=319.79 Aligned_cols=367 Identities=23% Similarity=0.288 Sum_probs=294.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCC------------CHHHHHHH
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSP------------PEGLQSEV 378 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~------------~~~~~~~a 378 (864)
++.|+.++.+.|++ .....|..+.... ..+..+++.|++|.|+++|+.. +++++..|
T Consensus 34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~--------~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQ--------DSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp -----------CCH---HHHHHHHHHHSST--------THHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred HHHHHHHhcCCCHH---HHHHHHHHHHcCC--------cHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 57788888777655 2455566655322 3567899999999999999863 36999999
Q ss_pred HHHHHHHhC-CchhHHHHHhcCcH----------HHHHHHHccCC--HH-----HHH-------HHHHHHHHhcCCCCcH
Q 048757 379 AKAIANLSV-DSKVAKAVSENGGI----------DILADLARSTN--RL-----VAE-------EVVGGLWNLSVGEDHK 433 (864)
Q Consensus 379 ~~~L~~L~~-~~~~~~~i~~~g~i----------~~Lv~lL~~~~--~~-----v~~-------~a~~aL~~Ls~~~~~~ 433 (864)
+++|.||+. +++......+.+.+ +.+++++.+.. .+ +++ .|+++|+|++.++++|
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R 182 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR 182 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHH
Confidence 999999998 66666666666776 55566665431 12 444 8999999999999999
Q ss_pred HHHHhhCcHHHHHHHHccc--------CCCCHHHHHHHHHHHHHhcCCCc-chHHHHhc-CcHHHHHHHHHccCchhHHH
Q 048757 434 GAIARAGGIKALVDLIFKW--------SSWNDGVLERAAGALANLAADDK-CSLEVARA-GGVHALVMLARSFMFEGVQE 503 (864)
Q Consensus 434 ~~i~~~g~i~~L~~lL~~~--------~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~-~~i~~Lv~ll~~~~~~~v~~ 503 (864)
..|.+.|++++|+.+|... ...+..++..|+++|.||+.+++ .+..+... |.+|.|+.+|+++ ++++++
T Consensus 183 ~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~ 261 (458)
T 3nmz_A 183 HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQ 261 (458)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHH
T ss_pred HHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHH
Confidence 9999999999999999521 11346789999999999999876 56666544 5599999999974 699999
Q ss_pred HHHHHHHHHhhcCCCCcccchhhhccChHHHHHHH-hcCCCHHHHHHHHHHHHHhcC-ChhhHHHHH-HCCChHHHHHHH
Q 048757 504 QAARALANLVAHGDSNSNNAAVGLETGALEALVQL-TFSKHEGVRQEAAGALWNLSF-DDRNREAIA-AAGGVEALVALV 580 (864)
Q Consensus 504 ~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~Ls~-~~~~~~~i~-~~~~i~~Lv~lL 580 (864)
.|+++|.+|+... ++.++..+.+.|+++.|+++ +.+.++++++.|+.+|+||+. .++++..+. ..|+++.|+++|
T Consensus 262 ~A~~aL~nLs~~~--~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL 339 (458)
T 3nmz_A 262 VIASVLRNLSWRA--DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339 (458)
T ss_dssp HHHHHHHHHTSSC--CHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHT
T ss_pred HHHHHHHHHhcCC--CHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHh
Confidence 9999999999731 35688899999999999997 566789999999999999999 778888887 689999999999
Q ss_pred HhcCC-CCHHHHHHHHHHHHHhcc----CchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHh
Q 048757 581 RSCSS-SSQGLQERAAGALWGLSL----SEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVE 654 (864)
Q Consensus 581 ~~~~~-~~~~v~~~A~~aL~~L~~----~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~ 654 (864)
.+... ...++++.|+++|+|++. +++++..+.+.|++++|+.+|++++..+++.|+++|+||+. +++++..+++
T Consensus 340 ~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~ 419 (458)
T 3nmz_A 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD 419 (458)
T ss_dssp TCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 86111 112599999999999995 78899999999999999999999999999999999999995 7889999999
Q ss_pred CCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccce
Q 048757 655 GGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDI 692 (864)
Q Consensus 655 ~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~ 692 (864)
.|+++.|++++.+++ +.++..|+++|.++..+++..+
T Consensus 420 ~G~I~~Lv~LL~s~~-~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 420 MGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTCCSCC-
T ss_pred CCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHhhh
Confidence 999999999998875 8899999999999999988653
No 11
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=332.33 Aligned_cols=477 Identities=22% Similarity=0.218 Sum_probs=373.9
Q ss_pred HHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHH-hCCHHHHHHHhcCC-CHHHHHHHHHHHH
Q 048757 306 WLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILR-HGGVRLLLDLARSP-PEGLQSEVAKAIA 383 (864)
Q Consensus 306 ~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~-~~~~~~~a~~~L~ 383 (864)
+..++++.|+.+|+++++.+|..|+.+|++|+..+. .+..+.. .|+++.|++.|.++ +++++..|+.+|.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~--------~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~ 82 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA--------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLH 82 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT--------HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh--------hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 334559999999999999999999999999997653 2344443 48899999999875 8999999999999
Q ss_pred HHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHH
Q 048757 384 NLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLER 462 (864)
Q Consensus 384 ~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~ 462 (864)
+|+.+++.+..+.+.|+++.|+++|+++++.++..|+.+|.+++.. ++.+..+.+.|+++.|++++.+ ++..++..
T Consensus 83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~~~~~ 159 (644)
T 2z6h_A 83 NLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAI 159 (644)
T ss_dssp HHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---CCHHHHHH
T ss_pred HHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc---CCHHHHHH
Confidence 9999999999999999999999999999999999999999999875 5678888899999999999974 56788888
Q ss_pred HHHHHHHhcCC-CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC
Q 048757 463 AAGALANLAAD-DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS 541 (864)
Q Consensus 463 a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~ 541 (864)
++.+|.+++.. ++++..+.+.|+++.|+.++++.+.+.+++.++.+|.+|+. .+.++..+.+.|+++.|+.++.+
T Consensus 160 a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~----~~~~~~~l~~~g~l~~L~~ll~~ 235 (644)
T 2z6h_A 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV----CSSNKPAIVEAGGMQALGLHLTD 235 (644)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT----CTTHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc----CcccHHHHHHCCCHHHHHHHHhc
Confidence 89999999974 56888999999999999999987777888999999999997 56788899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHH
Q 048757 542 KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPL 620 (864)
Q Consensus 542 ~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~L 620 (864)
.+..++..++++|.+++....... ...++++.|++++.+ ++++++..|+++|++|+.. +.++..+.+.|+++.|
T Consensus 236 ~~~~~~~~a~~~L~nL~~~~~~~~--~~~~~i~~Lv~lL~~---~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~L 310 (644)
T 2z6h_A 236 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310 (644)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCC--SCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcchhhh--hhhhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHH
Confidence 999999999999999987643211 112578999999986 8999999999999999986 6788899999999999
Q ss_pred HHHHccC--CHHHHHHHHHHHHHhcCC-cc---cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceee
Q 048757 621 IALARSA--VVDVHETAAGALWNLAFN-PG---NALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIAS 694 (864)
Q Consensus 621 v~lL~~~--~~~v~~~a~~aL~~L~~~-~~---~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~ 694 (864)
+.+|.+. .+.++..|+++|++|+.. ++ .+..+.+.|+++.|++++.+++.+.++..|+++|++++.+....
T Consensus 311 v~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~--- 387 (644)
T 2z6h_A 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH--- 387 (644)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH---
T ss_pred HHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH---
Confidence 9999863 379999999999999874 32 45668899999999999998766789999999999998765411
Q ss_pred ecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHH---hc---------------------cChhhHHHHhh
Q 048757 695 IGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVR---SF---------------------SDPQAFATALA 750 (864)
Q Consensus 695 ~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~---~~---------------------~~~~~~~~a~~ 750 (864)
.. + .+ .| +++.++. .. .+++..+.
T Consensus 388 --------------~~-----i---~~--~~-----~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~--- 435 (644)
T 2z6h_A 388 --------------AP-----L---RE--QG-----AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEG--- 435 (644)
T ss_dssp --------------HH-----H---HH--TT-----HHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHH---
T ss_pred --------------HH-----H---HH--cC-----CHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHH---
Confidence 00 0 00 11 1222221 11 11122211
Q ss_pred ccchhHHhcccc----ccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCcchhhhhhhhhhcChhh
Q 048757 751 SAVPKSLAQITE----GARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPGGQHSMHHTNLLQNVGAPR 826 (864)
Q Consensus 751 ~~a~~~l~~~~~----~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (864)
++.++.+++. ...+.+. .++++|+++|.++++.++..|+++|.++... . +....+.+.|+.+
T Consensus 436 --a~~aL~~La~~~~~~~~l~~~-------~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~---~--~~~~~i~~~g~l~ 501 (644)
T 2z6h_A 436 --CTGALHILARDVHNRIVIRGL-------NTIPLFVQLLYSPIENIQRVAAGVLCELAQD---K--EAAEAIEAEGATA 501 (644)
T ss_dssp --HHHHHHHHTTSHHHHHHHHHT-------TCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS---H--HHHHHHHHTTCHH
T ss_pred --HHHHHHHHhcCHHHHHHHHhC-------CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---H--HHHHHHHHcCChh
Confidence 1223333332 1222233 4899999999999999999999999998632 1 1234466677777
Q ss_pred HHHHhhhhhccchhHHHHHHHHHhhhc
Q 048757 827 VLQSTAAAAIAPVEAKIFAKIVLRNLE 853 (864)
Q Consensus 827 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (864)
.|..+..+..+.+ +..|.-.+.++-
T Consensus 502 ~L~~ll~~~~~~v--r~~A~~aL~~l~ 526 (644)
T 2z6h_A 502 PLTELLHSRNEGV--ATYAAAVLFRMS 526 (644)
T ss_dssp HHHHHTTCSCHHH--HHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHH--HHHHHHHHHHHh
Confidence 7777765544333 333333344443
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=328.88 Aligned_cols=462 Identities=22% Similarity=0.222 Sum_probs=359.9
Q ss_pred HHHHh-hcHHHHHHHHccC-CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHH
Q 048757 304 DFWLR-QGATLLLSLMESS-QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKA 381 (864)
Q Consensus 304 ~~~~~-~gv~~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~ 381 (864)
.++.. ++++.|++.|.+. +++++..|+.+|.+|+...+ .+..+.+.|+++.|+++|+++++.++..|+++
T Consensus 50 ~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~--------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a 121 (644)
T 2z6h_A 50 AIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--------GLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121 (644)
T ss_dssp HHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH--------HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh--------hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 33433 4499999999865 89999999999999986543 46778899999999999999999999999999
Q ss_pred HHHHhCC-chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHH
Q 048757 382 IANLSVD-SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGV 459 (864)
Q Consensus 382 L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v 459 (864)
|.+++.+ +..+..+.+.|+++.|+++|+++++.++..++.+|++++. +++++..+.+.|+++.|++++++ ...+.+
T Consensus 122 L~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~--~~~~~~ 199 (644)
T 2z6h_A 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKL 199 (644)
T ss_dssp HHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT--CCCHHH
T ss_pred HHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc--CChHHH
Confidence 9999985 5778888899999999999999999999999999999996 77899999999999999999985 446788
Q ss_pred HHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHh
Q 048757 460 LERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539 (864)
Q Consensus 460 ~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL 539 (864)
++.++.+|++++..++++..+.+.|+++.|+.++.+. ++.++..++++|.+|+..... . ....++++.|++++
T Consensus 200 ~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~a~~~L~nL~~~~~~----~--~~~~~~i~~Lv~lL 272 (644)
T 2z6h_A 200 LWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK----Q--EGMEGLLGTLVQLL 272 (644)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCS-CHHHHHHHHHHHHHHGGGCTT----C--CSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcchh----h--hhhhhHHHHHHHHH
Confidence 8999999999999888999999999999999999885 689999999999999985321 1 12348899999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-c---hhhHHhhhc
Q 048757 540 FSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-E---ANSIAIGRE 614 (864)
Q Consensus 540 ~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~---~~~~~i~~~ 614 (864)
.+.+++++..|+++|++|+.. ++++..+.+.|+++.|++++.+. +..+.++..|+++|++++.. + ..+..+.+.
T Consensus 273 ~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~ 351 (644)
T 2z6h_A 273 GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 351 (644)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 999999999999999999987 57788999999999999999861 12389999999999999864 2 345668889
Q ss_pred CCHHHHHHHHccCC-HHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHH--hhcCCccc
Q 048757 615 GGVAPLIALARSAV-VDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAY--IVDGRMED 691 (864)
Q Consensus 615 ~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~--l~~~~~~~ 691 (864)
|+++.|+++|++++ +.++..|+++|+|++.++.++..+.+.|+++.|++++.+++ +.+|..|+|++.+ +..+..
T Consensus 352 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~-~~vr~~a~~al~n~~~~~~~~-- 428 (644)
T 2z6h_A 352 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGVR-- 428 (644)
T ss_dssp THHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHH-HHHTTC----------CCSSC--
T ss_pred cChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccc-hhhhhHhhhccccchhccccc--
Confidence 99999999999875 69999999999999999999999999999999999998864 7788889998876 222211
Q ss_pred eeeecccccCCCcccchHHHHHHHHHHHHhhccc--cc-chhhhhHHHHhc--cChhhHHHHhhccchhHHhccc-cccC
Q 048757 692 IASIGSSLEGTSESENLDVIRRMALKHIEDFCAG--RI-ALKHIEDFVRSF--SDPQAFATALASAVPKSLAQIT-EGAR 765 (864)
Q Consensus 692 ~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g--~~-~~~~i~~l~~~~--~~~~~~~~a~~~~a~~~l~~~~-~~~~ 765 (864)
...+...++ .++.+++..... .+ ...++++++.-. .++.++..+. .++..+.... ....
T Consensus 429 -----------~~~v~~~a~--~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~--~aL~~l~~~~~~~~~ 493 (644)
T 2z6h_A 429 -----------MEEIVEGCT--GALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA--GVLCELAQDKEAAEA 493 (644)
T ss_dssp -----------HHHHHHHHH--HHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH--HHHHHHHTSHHHHHH
T ss_pred -----------HHHHHHHHH--HHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHH--HHHHHHHcCHHHHHH
Confidence 111222222 444444321100 00 012466666422 2333333222 2222222211 2333
Q ss_pred cccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 048757 766 IPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPG 808 (864)
Q Consensus 766 ~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~ 808 (864)
+.+.| ++++|++++.++++.+|..|+++|.++....
T Consensus 494 i~~~g-------~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 494 IEAEG-------ATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp HHHTT-------CHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHcC-------ChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 44455 8899999999999999999999998887644
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=3.9e-32 Score=313.39 Aligned_cols=363 Identities=20% Similarity=0.211 Sum_probs=321.4
Q ss_pred hhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Q 048757 308 RQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPP-EGLQSEVAKAIANLS 386 (864)
Q Consensus 308 ~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~~~~~a~~~L~~L~ 386 (864)
...+|.|++.|.+++++++..|+..|.+++....+. ....+...|++|.|+++|++++ +.++..|+++|++++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~------~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~ 146 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSP------PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 146 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSC------CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc------hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999999997655422 2567889999999999999876 999999999999999
Q ss_pred CC-chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 387 VD-SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 387 ~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
.. ++.+..+.+.|+++.|+.+|.++++.+++.|+++|++|+.+ +.++..+.+.|++++|+.++.. +.+..++..++
T Consensus 147 ~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~--~~~~~v~~~a~ 224 (528)
T 4b8j_A 147 SGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE--HTKLSMLRNAT 224 (528)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT--TCCHHHHHHHH
T ss_pred CCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc--CCCHHHHHHHH
Confidence 95 78999999999999999999999999999999999999875 5678899999999999999964 46889999999
Q ss_pred HHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCH
Q 048757 465 GALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHE 544 (864)
Q Consensus 465 ~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 544 (864)
++|++|+...+........++++.|+.++.+. +++++..++++|.+++.. .+.....+.+.|+++.|+.+|.++++
T Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~---~~~~~~~~~~~g~v~~Lv~lL~~~~~ 300 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYLSDG---TNDKIQAVIEAGVCPRLVELLLHPSP 300 (528)
T ss_dssp HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSS---CHHHHHHHHHTTCHHHHHHHTTCSCH
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCHHHHHHHHHcCCCh
Confidence 99999999865555556689999999999884 689999999999999974 44555677888999999999999999
Q ss_pred HHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCC-CHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHH
Q 048757 545 GVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSS-SQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLI 621 (864)
Q Consensus 545 ~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~-~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv 621 (864)
.++..|+++|++++.. +.....+.+.|+++.|+.+|.+ + ++.++..|+++|++++.. +.....+.+.|+++.|+
T Consensus 301 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~ 377 (528)
T 4b8j_A 301 SVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQ---NLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLV 377 (528)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcC---CCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHH
Confidence 9999999999999985 5667788899999999999997 6 899999999999999975 56667888899999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcCC--cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 622 ALARSAVVDVHETAAGALWNLAFN--PGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 622 ~lL~~~~~~v~~~a~~aL~~L~~~--~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
.+|+++++.++..|+++|.+++.. ++....+.+.|+++.|+.++.+++ +.++..++++|.++..
T Consensus 378 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d-~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 378 NLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPD-IRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC-HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 677788889999999999999876 7889999999987643
No 14
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.4e-33 Score=312.91 Aligned_cols=359 Identities=20% Similarity=0.192 Sum_probs=297.8
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHH
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAI 436 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i 436 (864)
.+|.++.+|++++++++..|+++|++++. ++..+..+.+.|++|.|+++|+++++.+++.|+++|.||+.. ++++..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999997 456788999999999999999999999999999999999985 8999999
Q ss_pred HhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHH--------cc-------CchhH
Q 048757 437 ARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLAR--------SF-------MFEGV 501 (864)
Q Consensus 437 ~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~--------~~-------~~~~v 501 (864)
++.|++++|+++|.. ++++++++.|+++|+||+..++++..+++ |++|.|+.++. ++ .++++
T Consensus 83 ~~~G~i~~Lv~lL~~--~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 83 RRQNGIREAVSLLRR--TGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHTTCHHHHHHHHTT--CCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHcCCHHHHHHHHhh--CCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999973 46889999999999999999889998999 99999999993 22 23567
Q ss_pred HHHHHHHHHHHhhcCCCCcccchhhhcc-ChHHHHHHHhcC------CCHHHHHHHHHHHHHhcCChh------------
Q 048757 502 QEQAARALANLVAHGDSNSNNAAVGLET-GALEALVQLTFS------KHEGVRQEAAGALWNLSFDDR------------ 562 (864)
Q Consensus 502 ~~~a~~aL~~L~~~~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~~Ls~~~~------------ 562 (864)
...|+++|.||+. .++++..+.+. |+++.|+.++++ .+.++++.++.+|+|++...+
T Consensus 160 ~~~a~~aL~nLs~----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 160 FFNATGCLRNLSS----ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp HHHHHHHHHHHTT----SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHcc----CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 7799999999997 46788899987 999999999985 455688899999999974210
Q ss_pred ---------------------------------------hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 048757 563 ---------------------------------------NREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL 603 (864)
Q Consensus 563 ---------------------------------------~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~ 603 (864)
..+.+.+.++++.|+.+|.+ +.++.+++.|+++|+|++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~--~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGK--SKKDATLEACAGALQNLTA 313 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhh--cCCHHHHHHHHHHHHHhcc
Confidence 11223344568899999987 4679999999999999997
Q ss_pred Cc-h----h-hHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCc-----HH
Q 048757 604 SE-A----N-SIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLS-----KM 672 (864)
Q Consensus 604 ~~-~----~-~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~-----~~ 672 (864)
.. + . +..+.+.|++|+|+++|++++++++..|+++|.||+.++.++..|.+ |+++.|+++|.++++ +.
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHH
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHH
Confidence 52 2 2 34455789999999999999999999999999999999888877654 899999999988753 34
Q ss_pred HHHHHHHHHHHhhcCCccceeeecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChhhHHHHhhcc
Q 048757 673 ARFMAALALAYIVDGRMEDIASIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQAFATALASA 752 (864)
Q Consensus 673 ~r~~aa~aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~~~~~a~~~~ 752 (864)
+...++++|.++..+++ +.
T Consensus 393 v~~~~l~~l~ni~~~~~----------------------------------------------------~~--------- 411 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQP----------------------------------------------------QL--------- 411 (457)
T ss_dssp HHHHHHHHHHHHHTTCT----------------------------------------------------HH---------
T ss_pred HHHHHHHHHHHHHhcCH----------------------------------------------------HH---------
Confidence 55566666666544332 00
Q ss_pred chhHHhccccccCcccccccccchhhHHHHHHHhcCC-cHHHHHHHHHHHHhhc
Q 048757 753 VPKSLAQITEGARIPEAAHLRCSGAEIGRFVSMLRNP-SSILKACAAVALLQFT 805 (864)
Q Consensus 753 a~~~l~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~-~~~~~~~Aa~al~~~~ 805 (864)
...+.+.| |+++|++++.++ +++++..|++.|.++-
T Consensus 412 ----------~~~i~~~g-------~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 412 ----------AKQYFSSS-------MLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp ----------HHHHCCHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred ----------HHHHHHcC-------CHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 11223556 899999999999 9999999999997764
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=9e-33 Score=330.38 Aligned_cols=479 Identities=22% Similarity=0.217 Sum_probs=374.5
Q ss_pred HHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHH-hCCHHHHHHHhcCC-CHHHHHHHHHHHH
Q 048757 306 WLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILR-HGGVRLLLDLARSP-PEGLQSEVAKAIA 383 (864)
Q Consensus 306 ~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~-~~~~~~~a~~~L~ 383 (864)
+..++++.|+.+|+++++.+|..|+.+|++|+..+. .+..+.+ .++++.|+++|+++ ++.++..|+.+|.
T Consensus 147 i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~--------~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~ 218 (780)
T 2z6g_A 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA--------SRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLH 218 (780)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHH--------HHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCCh--------hHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 334569999999999999999999999999986542 2344553 47899999999754 8999999999999
Q ss_pred HHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHH
Q 048757 384 NLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLER 462 (864)
Q Consensus 384 ~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~ 462 (864)
+|+.+++++..+.+.|+++.|+++|+++++.++..|+.+|.+|+.. ++.+..+.+.|+++.|++++.+ .+..++..
T Consensus 219 ~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~---~~~~v~~~ 295 (780)
T 2z6g_A 219 NLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK---TNVKFLAI 295 (780)
T ss_dssp HHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC---CCHHHHHH
T ss_pred HHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc---CCHHHHHH
Confidence 9999999999999999999999999999999999999999999875 5778888899999999999974 67889999
Q ss_pred HHHHHHHhcCC-CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcC
Q 048757 463 AAGALANLAAD-DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFS 541 (864)
Q Consensus 463 a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~ 541 (864)
++.+|.+++.. ++.+..+.+.|+++.|+.++++++.+..++.++.+|.+|+. .+.++..+.+.|+++.|+.++.+
T Consensus 296 a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~----~~~~~~~i~~~g~l~~Ll~lL~~ 371 (780)
T 2z6g_A 296 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV----CSSNKPAIVEAGGMQALGLHLTD 371 (780)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT----STTHHHHHHHTTHHHHHGGGTTC
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc----ChHHHHHHHHhchHHHHHHHHcC
Confidence 99999999975 45888889999999999999987767778889999999997 45678889999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHH
Q 048757 542 KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPL 620 (864)
Q Consensus 542 ~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~L 620 (864)
.+..++..++++|.+|+....... ...++++.|++++.+ .+++++..|+++|++|+.. +..+..+.+.|+++.|
T Consensus 372 ~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~i~~Lv~lL~~---~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~L 446 (780)
T 2z6g_A 372 PSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGS---DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 446 (780)
T ss_dssp SCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHH
T ss_pred CchHHHHHHHHHHHHHhccchhhh--hhhhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 999999999999999987643211 113578999999986 8999999999999999987 5788889999999999
Q ss_pred HHHHcc-CC-HHHHHHHHHHHHHhcCC-cc---cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccceee
Q 048757 621 IALARS-AV-VDVHETAAGALWNLAFN-PG---NALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIAS 694 (864)
Q Consensus 621 v~lL~~-~~-~~v~~~a~~aL~~L~~~-~~---~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~~ 694 (864)
+.+|.+ .+ +.++..|+++|++|+.. ++ .+..+...|+++.|++++.+++.+.++..|+++|++++.+....
T Consensus 447 v~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~--- 523 (780)
T 2z6g_A 447 VRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH--- 523 (780)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH---
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH---
Confidence 999976 33 58999999999999874 33 25688899999999999998876789999999999998754311
Q ss_pred ecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHH---hc---------------------cChhhHHHHhh
Q 048757 695 IGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVR---SF---------------------SDPQAFATALA 750 (864)
Q Consensus 695 ~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~---~~---------------------~~~~~~~~a~~ 750 (864)
.. + .+ .| +++.++. .. ..++..+.
T Consensus 524 --------------~~-----i---~~--~g-----~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~--- 571 (780)
T 2z6g_A 524 --------------AP-----L---RE--QG-----AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEA--- 571 (780)
T ss_dssp --------------HH-----H---HH--TT-----HHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHH---
T ss_pred --------------HH-----H---HH--CC-----CHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHH---
Confidence 00 0 00 11 1222221 11 11112221
Q ss_pred ccchhHHhcccc----ccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCCCcchhhhhhhhhhcChhh
Q 048757 751 SAVPKSLAQITE----GARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPGGQHSMHHTNLLQNVGAPR 826 (864)
Q Consensus 751 ~~a~~~l~~~~~----~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (864)
+..++++++. ...+.+.| +|++|+.+|.++++.++..|+.+|.++... -.....+.+.|+.+
T Consensus 572 --a~~aL~~La~~~~~~~~l~~~~-------~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-----~~~~~~i~~~g~i~ 637 (780)
T 2z6g_A 572 --CTGALHILARDIHNRIVIRGLN-------TIPLFVQLLYSPIENIQRVAAGVLCELAQD-----KEAAEAIEAEGATA 637 (780)
T ss_dssp --HHHHHHHHTTSHHHHHHHHHTC-------CHHHHHHGGGCSCHHHHHHHHHHHHHHHTS-----HHHHHHHHHTTCHH
T ss_pred --HHHHHHHHhcChhhHHHHHHCC-------cHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHCCCHH
Confidence 1223444331 22233444 899999999999999999999999998632 12234566677777
Q ss_pred HHHHhhhhhccchhHHHHHHHHHhhhccc
Q 048757 827 VLQSTAAAAIAPVEAKIFAKIVLRNLEHH 855 (864)
Q Consensus 827 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 855 (864)
.|.++..+.+. .-|..|...+.++.++
T Consensus 638 ~L~~Ll~~~~~--~Vr~~A~~aL~~l~~~ 664 (780)
T 2z6g_A 638 PLTELLHSRNE--GVATYAAAVLFRMSED 664 (780)
T ss_dssp HHHHGGGCSCH--HHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCH--HHHHHHHHHHHHHHcC
Confidence 77777654433 3344444444555543
No 16
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=307.23 Aligned_cols=336 Identities=22% Similarity=0.248 Sum_probs=280.6
Q ss_pred hhCCchhHHHHHhhcHHHHHHHHccC------------CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCH---
Q 048757 296 KKNPKEFDDFWLRQGATLLLSLMESS------------QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGV--- 360 (864)
Q Consensus 296 ~~~~~~~~~~~~~~gv~~L~~lL~~~------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i--- 360 (864)
+.+.+....+.+.|.+|.|+++|+.. +++++.+|+++|.|++.++.+.. ....+.+++
T Consensus 57 ~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~-------~~~~~~~~~~~l 129 (458)
T 3nmz_A 57 SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDK-------RGRREIRVLHLL 129 (458)
T ss_dssp HSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCH-------HHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchh-------HHHHHHHHHHHH
Confidence 45555434444444499999999863 37999999999999999887652 344455555
Q ss_pred -------HHHHHHhcCCC--HH-----HHH-------HHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHcc---------
Q 048757 361 -------RLLLDLARSPP--EG-----LQS-------EVAKAIANLSVDSKVAKAVSENGGIDILADLARS--------- 410 (864)
Q Consensus 361 -------~~L~~lL~~~~--~~-----~~~-------~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~--------- 410 (864)
+.+++++.+.. .+ +++ .|+++|+|++.++++|..+.+.|++++|+.+|..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~ 209 (458)
T 3nmz_A 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 209 (458)
T ss_dssp HHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCC
T ss_pred HHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhccccccc
Confidence 55677776542 22 444 8999999999999999999999999999999952
Q ss_pred --CCHHHHHHHHHHHHHhcCCCC-cHHHHHh-hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCC--CcchHHHHhcC
Q 048757 411 --TNRLVAEEVVGGLWNLSVGED-HKGAIAR-AGGIKALVDLIFKWSSWNDGVLERAAGALANLAAD--DKCSLEVARAG 484 (864)
Q Consensus 411 --~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~-~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~--~~~~~~i~~~~ 484 (864)
.++.+++.|+++|.||+.+++ ++..+.. .|+|++|+++|. ++++++++.|+++|+||+.. ++++..+.+.|
T Consensus 210 ~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~---s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~G 286 (458)
T 3nmz_A 210 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLK---SESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 346799999999999998665 6666754 455999999997 57899999999999999985 34889999999
Q ss_pred cHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhh-ccChHHHHHHHhcCCCH----HHHHHHHHHHHHhcC
Q 048757 485 GVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGL-ETGALEALVQLTFSKHE----GVRQEAAGALWNLSF 559 (864)
Q Consensus 485 ~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~a~~~L~~Ls~ 559 (864)
+++.|+++|....++++++.++.+|+||+.+ +++++..+. ..|+++.|+++|.+.++ ++++.|+++|+||+.
T Consensus 287 aI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~---~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~ 363 (458)
T 3nmz_A 287 SVKALMECALEVKKESTLKSVLSALWNLSAH---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363 (458)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH---CHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHccC---CHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh
Confidence 9999999876545688999999999999985 345566666 89999999999987654 489999999999995
Q ss_pred ----ChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc-CchhhHHhhhcCCHHHHHHHHccCCHHHHHH
Q 048757 560 ----DDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL-SEANSIAIGREGGVAPLIALARSAVVDVHET 634 (864)
Q Consensus 560 ----~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~ 634 (864)
++++++.+.+.|+++.|+.+|.+ ++.++++.|+++|+|++. +++.+..+.+.|++++|+++|+++++.+++.
T Consensus 364 ~~a~~~~~~~~i~~~G~i~~Lv~LL~~---~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~ 440 (458)
T 3nmz_A 364 LIATNEDHRQILRENNCLQTLLQHLKS---HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 440 (458)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHSSC---SCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHH
T ss_pred cccCCHHHHHHHHHcccHHHHHHHHcC---CChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 78899999999999999999997 899999999999999994 6889999999999999999999999999999
Q ss_pred HHHHHHHhcCCcc
Q 048757 635 AAGALWNLAFNPG 647 (864)
Q Consensus 635 a~~aL~~L~~~~~ 647 (864)
|+++|.||+.+.+
T Consensus 441 Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 441 SAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHTCCS
T ss_pred HHHHHHHHHcCCH
Confidence 9999999987543
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.9e-32 Score=312.76 Aligned_cols=371 Identities=18% Similarity=0.183 Sum_probs=319.0
Q ss_pred chhHHHHHhhcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHH
Q 048757 300 KEFDDFWLRQGATLLLSLMES-SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEV 378 (864)
Q Consensus 300 ~~~~~~~~~~gv~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a 378 (864)
+....++..|+||.|+++|++ +++++|..|+++|++++.++.+ .+..+.+.|++|.|+.+|+++++++++.|
T Consensus 91 ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e-------~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A 163 (510)
T 3ul1_B 91 PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE-------QTKAVVDGGAIPAFISLLASPHAHISEQA 163 (510)
T ss_dssp CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred chHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-------HHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 344666766779999999975 5689999999999999977754 46789999999999999999999999999
Q ss_pred HHHHHHHhCC-chhHHHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhcCCCCcH-HHHHhhCcHHHHHHHHcc
Q 048757 379 AKAIANLSVD-SKVAKAVSENGGIDILADLARSTN-----RLVAEEVVGGLWNLSVGEDHK-GAIARAGGIKALVDLIFK 451 (864)
Q Consensus 379 ~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~aL~~Ls~~~~~~-~~i~~~g~i~~L~~lL~~ 451 (864)
+++|++|+.+ ++.+..+.+.|++++|+.++...+ ..+.+.++++|.+++.+.... ......|+++.|++++.
T Consensus 164 ~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~- 242 (510)
T 3ul1_B 164 VWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH- 242 (510)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh-
Confidence 9999999985 688999999999999999997653 457889999999998865443 33345678999999996
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccC
Q 048757 452 WSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETG 530 (864)
Q Consensus 452 ~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~ 530 (864)
+++++++..|+++|++|+..+. ....+.+.|+++.|+.++.+. ++.++..++++|.+++.. ++..+..+.+.|
T Consensus 243 --~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~---~~~~~~~i~~~g 316 (510)
T 3ul1_B 243 --HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTG---TDEQTQKVIDAG 316 (510)
T ss_dssp --CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTT
T ss_pred --cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcC---CHHHHHHHhhcc
Confidence 5788999999999999998876 456677899999999999984 689999999999999985 567778889999
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--Cchh
Q 048757 531 ALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL--SEAN 607 (864)
Q Consensus 531 ~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~--~~~~ 607 (864)
+++.|+.+|.++++.++..|+++|+||+.. ++.+..+.+.|+++.|+.++.+ ++.+++..|+++|+|++. +.+.
T Consensus 317 ~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~Aa~aL~Nl~~~~~~~~ 393 (510)
T 3ul1_B 317 ALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK---ADFKTQKEAAWAITNYTSGGTVEQ 393 (510)
T ss_dssp GGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHccCCHHH
Confidence 999999999999999999999999999886 5678888999999999999997 899999999999999986 4667
Q ss_pred hHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-------cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHH
Q 048757 608 SIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFN-------PGNALCIVEGGGVQALIHLCSSSLSKMARFMAALA 680 (864)
Q Consensus 608 ~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-------~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~a 680 (864)
+..+.+.|++++|+++|++.+++++..++++|.|+... ...+..|.+.||++.|-.|..+++ +.++..|...
T Consensus 394 ~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n-~~i~~~A~~i 472 (510)
T 3ul1_B 394 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN-ESVYKASLNL 472 (510)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHH
Confidence 78899999999999999999999999999999998751 123446778999999988887775 8899999999
Q ss_pred HHHhhcCC
Q 048757 681 LAYIVDGR 688 (864)
Q Consensus 681 L~~l~~~~ 688 (864)
+-..+...
T Consensus 473 ie~yf~~~ 480 (510)
T 3ul1_B 473 IEKYFSVE 480 (510)
T ss_dssp HHHHCC--
T ss_pred HHHHCCCc
Confidence 97666443
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.3e-32 Score=326.87 Aligned_cols=457 Identities=22% Similarity=0.227 Sum_probs=357.4
Q ss_pred hcHHHHHHHHccC-CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESS-QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
++++.|+++|++. +++++..|+.+|.+|+...+ .+..+.+.|+++.|+.+|+++++.++..|+++|.+|+.
T Consensus 192 ~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~--------~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 192 QMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE--------GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH--------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch--------hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4499999999865 89999999999999886532 35678889999999999999999999999999999998
Q ss_pred C-chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHH
Q 048757 388 D-SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAG 465 (864)
Q Consensus 388 ~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~ 465 (864)
+ ++.+..+.+.|+++.|++++++.+..++..++.+|++++. +++++..+.+.|+++.|+.+++. ......++.++.
T Consensus 264 ~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~--~~~~~~~~~a~~ 341 (780)
T 2z6g_A 264 HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT--YTYEKLLWTTSR 341 (780)
T ss_dssp HSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred CChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHH
Confidence 5 6788888899999999999999999999999999999986 57889999999999999999985 455677789999
Q ss_pred HHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHH
Q 048757 466 ALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEG 545 (864)
Q Consensus 466 ~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 545 (864)
+|.+|+..+.++..+.+.|+++.|+.++.+. ++.++..++++|.+|+..... .....++++.|++++++.+++
T Consensus 342 aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~~~------~~~~~~~i~~Lv~lL~~~d~~ 414 (780)
T 2z6g_A 342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAATK------QEGMEGLLGTLVQLLGSDDIN 414 (780)
T ss_dssp HHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTCTT------CSCCHHHHHHHHHHTTCSCHH
T ss_pred HHHHhhcChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhccchh------hhhhhhHHHHHHHHHcCCCHH
Confidence 9999999888899999999999999999885 588999999999999975321 112357899999999999999
Q ss_pred HHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-ch---hhHHhhhcCCHHHH
Q 048757 546 VRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EA---NSIAIGREGGVAPL 620 (864)
Q Consensus 546 v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~---~~~~i~~~~~i~~L 620 (864)
++..|+++|++|+.. ++.+..+.+.|+++.|+++|.+. ...+.++..|+++|++++.. ++ .+..+...++++.|
T Consensus 415 vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L 493 (780)
T 2z6g_A 415 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493 (780)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHH
Confidence 999999999999987 56788899999999999999861 12358999999999999874 22 35678889999999
Q ss_pred HHHHccCCH-HHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHH--hhcCCccceeeecc
Q 048757 621 IALARSAVV-DVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAY--IVDGRMEDIASIGS 697 (864)
Q Consensus 621 v~lL~~~~~-~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~--l~~~~~~~~~~~~~ 697 (864)
+++|++++. .++..|+++|+|++.++.++..+.+.|+++.|++++.+++ +.+|..|+|++.+ +..+..
T Consensus 494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~aa~al~nq~~~~~~~-------- 564 (780)
T 2z6g_A 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEGVR-------- 564 (780)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHH-HHHHHTTC------CCSTTCC--------
T ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcc-hhHHHHHhhccccchhhcccC--------
Confidence 999998775 9999999999999999889999999999999999998764 6788888888876 222211
Q ss_pred cccCCCcccchHHHHHHHHHHHHhhccc--cc-chhhhhHHHHhc--cChhhHHHHhhccchhHHhcc-ccccCcccccc
Q 048757 698 SLEGTSESENLDVIRRMALKHIEDFCAG--RI-ALKHIEDFVRSF--SDPQAFATALASAVPKSLAQI-TEGARIPEAAH 771 (864)
Q Consensus 698 ll~~~~~~v~~~~~~~~al~~l~~~~~g--~~-~~~~i~~l~~~~--~~~~~~~~a~~~~a~~~l~~~-~~~~~~~~~~~ 771 (864)
...++..++ .++.+|+..... .+ ...+|++|+.-. .++.++..+. .++..+... .....+.+.|
T Consensus 565 -----~~~v~~~a~--~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~--~aL~~L~~~~~~~~~i~~~g- 634 (780)
T 2z6g_A 565 -----MEEIVEACT--GALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAA--GVLCELAQDKEAAEAIEAEG- 634 (780)
T ss_dssp -----HHHHHHHHH--HHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHH--HHHHHHHTSHHHHHHHHHTT-
T ss_pred -----hHHHHHHHH--HHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHH--HHHHHHhcCHHHHHHHHHCC-
Confidence 111222222 444444321100 00 012466666422 3333333332 222222211 1233344445
Q ss_pred cccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhccCC
Q 048757 772 LRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTMPG 808 (864)
Q Consensus 772 ~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~~~ 808 (864)
++++|++++.++++.+|..|++||.++....
T Consensus 635 ------~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 635 ------ATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp ------CHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred ------CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 8999999999999999999999998887633
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=4.8e-31 Score=304.18 Aligned_cols=362 Identities=18% Similarity=0.176 Sum_probs=318.9
Q ss_pred hhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCC-CHHHHHHHHHHHHHHh
Q 048757 308 RQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSP-PEGLQSEVAKAIANLS 386 (864)
Q Consensus 308 ~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~~~~~a~~~L~~L~ 386 (864)
.+.++.|++.|++++++++..|+..|.++.....+. ....+.+.|++|.|+++|+++ ++.++..|+++|++++
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~------~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~ 159 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRP------PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIA 159 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSC------SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCc------cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 355999999999999999999999999997643221 245678899999999999997 8999999999999999
Q ss_pred C-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 387 V-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 387 ~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
. +++.+..+++.|+++.|+++|+++++.+++.|+++|++++.+ ++++..+...|+++.|+.++.+ .+..++..|+
T Consensus 160 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~v~~~a~ 236 (530)
T 1wa5_B 160 SGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS---NKPSLIRTAT 236 (530)
T ss_dssp TSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS---CCHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc---CCHHHHHHHH
Confidence 8 467888899999999999999999999999999999999975 5788888999999999999974 7789999999
Q ss_pred HHHHHhcCCC-cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCC
Q 048757 465 GALANLAADD-KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKH 543 (864)
Q Consensus 465 ~~L~~L~~~~-~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 543 (864)
++|++++... +........++++.|+.++.+. ++.++..++++|.+|+.. .+.....+.+.|+++.|+.++.+.+
T Consensus 237 ~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~---~~~~~~~~~~~~~v~~Lv~lL~~~~ 312 (530)
T 1wa5_B 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDG---PQEAIQAVIDVRIPKRLVELLSHES 312 (530)
T ss_dssp HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSS---CHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred HHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC---CHHHHHHHHhcCcHHHHHHHHCCCC
Confidence 9999999876 5555666789999999999884 689999999999999974 4456677788899999999999999
Q ss_pred HHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHH
Q 048757 544 EGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLI 621 (864)
Q Consensus 544 ~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv 621 (864)
+.++..|+++|++++.. +.....+.+.|+++.|+.+|.+ +++.++..|+++|++++.. +.....+.+.|+++.|+
T Consensus 313 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 389 (530)
T 1wa5_B 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS---PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389 (530)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 99999999999999976 5567778889999999999997 7899999999999999975 56667788899999999
Q ss_pred HHHccCCHHHHHHHHHHHHHhcC--Cc--ccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 622 ALARSAVVDVHETAAGALWNLAF--NP--GNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 622 ~lL~~~~~~v~~~a~~aL~~L~~--~~--~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
.+|+++++.++..|+++|++++. .+ +....+.+.|+++.|+.++.+++ +.++..|+++|.++..
T Consensus 390 ~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~-~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 390 KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD-NRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC-HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 33 56678889999999999999875 8899999999987653
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.6e-31 Score=307.10 Aligned_cols=371 Identities=18% Similarity=0.178 Sum_probs=319.2
Q ss_pred CchhHHHHHhhcHHHHHHHHcc-CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHH
Q 048757 299 PKEFDDFWLRQGATLLLSLMES-SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSE 377 (864)
Q Consensus 299 ~~~~~~~~~~~gv~~L~~lL~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~ 377 (864)
.+....++..|+||.|+++|+. ++++++..|+++|++++.++.+ ....+.+.|++|.|+.+|.+++++++..
T Consensus 109 ~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~-------~~~~vv~~Gaip~Lv~LL~s~~~~v~e~ 181 (529)
T 3tpo_A 109 QPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE-------QTKAVVDGGAIPAFISLLASPHAHISEQ 181 (529)
T ss_dssp CCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred CchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH-------HHHHHHHCCCHHHHHHHHcCCCHHHHHH
Confidence 3445666666669999999974 5699999999999999977654 3578999999999999999999999999
Q ss_pred HHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCC-----HHHHHHHHHHHHHhcCCCCc-HHHHHhhCcHHHHHHHHc
Q 048757 378 VAKAIANLSV-DSKVAKAVSENGGIDILADLARSTN-----RLVAEEVVGGLWNLSVGEDH-KGAIARAGGIKALVDLIF 450 (864)
Q Consensus 378 a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~-----~~v~~~a~~aL~~Ls~~~~~-~~~i~~~g~i~~L~~lL~ 450 (864)
|+++|++|+. +++.+..+.+.|++++|+.++...+ ..+.+.++++|.+++.+... .......|+++.|+.++.
T Consensus 182 A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~ 261 (529)
T 3tpo_A 182 AVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH 261 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhc
Confidence 9999999998 4789999999999999999997543 45788999999999886543 333445678999999996
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhcc
Q 048757 451 KWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLET 529 (864)
Q Consensus 451 ~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~ 529 (864)
+++++++..|+++|.+++..+. ....+...|+++.|+.++.+. ++.++..++.+|.+++.. ++.....+.+.
T Consensus 262 ---~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~---~~~~~~~i~~~ 334 (529)
T 3tpo_A 262 ---HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTG---TDEQTQKVIDA 334 (529)
T ss_dssp ---SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTS---CHHHHHHHHHT
T ss_pred ---CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHcc---chHHHHHHhhc
Confidence 5788999999999999998876 556778899999999999984 689999999999999975 56778888999
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--ch
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS--EA 606 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~~ 606 (864)
|+++.|+.+|.++++.++..|+++|+||+.. +..+..+.+.|+++.|+.++.+ ++.+++..|+++|+|++.. ++
T Consensus 335 g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~A~~aL~nl~~~~~~~ 411 (529)
T 3tpo_A 335 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK---ADFKTQKAAAWAITNYTSGGTVE 411 (529)
T ss_dssp TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHHHHHHHSCHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999999999986 5668888999999999999997 8999999999999999863 66
Q ss_pred hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC---C----cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHH
Q 048757 607 NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF---N----PGNALCIVEGGGVQALIHLCSSSLSKMARFMAAL 679 (864)
Q Consensus 607 ~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~---~----~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~ 679 (864)
....+.+.|++++|+++|++++++++..++.+|.++.. . ...+..+.+.||++.|..|..+++ +.++..|..
T Consensus 412 ~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n-~~i~~~A~~ 490 (529)
T 3tpo_A 412 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHEN-ESVYKASLN 490 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSS-HHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHH
Confidence 67789999999999999999999999999999999864 1 123446778999999999887775 889999999
Q ss_pred HHHHhhcC
Q 048757 680 ALAYIVDG 687 (864)
Q Consensus 680 aL~~l~~~ 687 (864)
.+-..+..
T Consensus 491 iie~yf~~ 498 (529)
T 3tpo_A 491 LIEKYFSV 498 (529)
T ss_dssp HHHHHC--
T ss_pred HHHHHCCC
Confidence 88765543
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.1e-30 Score=298.87 Aligned_cols=372 Identities=20% Similarity=0.196 Sum_probs=325.4
Q ss_pred chhHHHHHhhcHHHHHHHHccCC-HHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHH
Q 048757 300 KEFDDFWLRQGATLLLSLMESSQ-QEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEV 378 (864)
Q Consensus 300 ~~~~~~~~~~gv~~L~~lL~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a 378 (864)
+....++..+++|.|+++|++++ +.++..|+++|++++.++.+ .+..+.+.|+++.|+.+|.++++.++..|
T Consensus 108 ~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~-------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a 180 (528)
T 4b8j_A 108 PPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE-------NTKVVIDHGAVPIFVKLLGSSSDDVREQA 180 (528)
T ss_dssp CCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred chHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-------HHHHHHhCCcHHHHHHHhcCCCHHHHHHH
Confidence 44456566666999999999887 99999999999999976543 46778899999999999999999999999
Q ss_pred HHHHHHHhCC-chhHHHHHhcCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCC
Q 048757 379 AKAIANLSVD-SKVAKAVSENGGIDILADLA-RSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWN 456 (864)
Q Consensus 379 ~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~ 456 (864)
+++|++|+.+ +..+..+.+.|++++|+.++ .+.++.++..++++|++|+............|+++.|++++. +.+
T Consensus 181 ~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~---~~~ 257 (528)
T 4b8j_A 181 VWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIH---SND 257 (528)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT---CCC
T ss_pred HHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC---CCC
Confidence 9999999985 67899999999999999999 677899999999999999987555555566899999999996 478
Q ss_pred HHHHHHHHHHHHHhcCCCcc-hHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHH
Q 048757 457 DGVLERAAGALANLAADDKC-SLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEAL 535 (864)
Q Consensus 457 ~~v~~~a~~~L~~L~~~~~~-~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L 535 (864)
.+++..++++|++++..... ...+.+.|+++.|+.++.++ ++.++..|+++|.+++.. ++.....+.+.|+++.|
T Consensus 258 ~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~---~~~~~~~~~~~~~l~~L 333 (528)
T 4b8j_A 258 EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTG---DDAQTQCIIDHQALPCL 333 (528)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS---CHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcC---CHHHHHHHHHhhhHHHH
Confidence 89999999999999987664 46778899999999999985 589999999999999985 55677778889999999
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--chhhHHh
Q 048757 536 VQLTFSK-HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS--EANSIAI 611 (864)
Q Consensus 536 ~~lL~~~-~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~~~~~~i 611 (864)
+.+|.++ ++.++..|+++|.|++.. ++....+.+.|+++.|+.+|.+ +++.++..|+++|++++.. ++.+..+
T Consensus 334 ~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (528)
T 4b8j_A 334 LSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQT---AEFDIKKEAAWAISNATSGGSHDQIKYL 410 (528)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 9999998 999999999999999975 5567788899999999999998 7999999999999999975 6778888
Q ss_pred hhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc------------cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHH
Q 048757 612 GREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG------------NALCIVEGGGVQALIHLCSSSLSKMARFMAAL 679 (864)
Q Consensus 612 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~------------~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~ 679 (864)
.+.|++++|+.+|.++++.++..|+++|.++....+ ....+.+.|+++.|..+..+++ +.++..|..
T Consensus 411 ~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~-~~v~~~a~~ 489 (528)
T 4b8j_A 411 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDN-NEIYEKAVK 489 (528)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHH
T ss_pred HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHH
Confidence 899999999999999999999999999999986332 4668889999999999988875 889999999
Q ss_pred HHHHhhcCCc
Q 048757 680 ALAYIVDGRM 689 (864)
Q Consensus 680 aL~~l~~~~~ 689 (864)
++..+.....
T Consensus 490 il~~~~~~e~ 499 (528)
T 4b8j_A 490 ILEAYWMDEE 499 (528)
T ss_dssp HHHHHCC---
T ss_pred HHHHHCCCcc
Confidence 9998876544
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.6e-30 Score=293.86 Aligned_cols=359 Identities=19% Similarity=0.174 Sum_probs=311.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHh-CCHHHHHHHhcCC-CHHHHHHHHHHHHHHhC-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRH-GGVRLLLDLARSP-PEGLQSEVAKAIANLSV- 387 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~-~~i~~L~~lL~~~-~~~~~~~a~~~L~~L~~- 387 (864)
++.|++.++++++++|..|+..|+.+.....+. ....+... |+++.|+++|+++ ++.++..|+++|.+++.
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~------~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 95 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNP------PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASG 95 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSC------CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCC------cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC
Confidence 788999999999999999999999986422111 12345666 9999999999998 89999999999999998
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHH
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGA 466 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~ 466 (864)
+++....+.+.|+++.|+++++++++.+++.|+.+|++++.+ ++.+..+.+.|+++.|++++.+ +.+..++..++++
T Consensus 96 ~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~~v~~~a~~~ 173 (450)
T 2jdq_A 96 NSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK--QNRLTMTRNAVWA 173 (450)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS--CCCHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 467778888999999999999999999999999999999885 4678888999999999999973 4678999999999
Q ss_pred HHHhcCCC-c-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCH
Q 048757 467 LANLAADD-K-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHE 544 (864)
Q Consensus 467 L~~L~~~~-~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 544 (864)
|++++... + ....+ ..++++.|+.++.+. ++.++..++++|.+++.. .+.....+.+.|+++.|+.++.++++
T Consensus 174 L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~i~~L~~ll~~~~~ 248 (450)
T 2jdq_A 174 LSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVS-DTDVLADACWALSYLSDG---PNDKIQAVIDAGVCRRLVELLMHNDY 248 (450)
T ss_dssp HHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSS---SHHHHHHHHHTTTHHHHHHHTTCSCH
T ss_pred HHHHhCCCCCCCCHHH-HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCC---CcHHHHHHHHcCcHHHHHHHHCCCch
Confidence 99999765 3 22222 378999999999874 689999999999999974 34566777788999999999999999
Q ss_pred HHHHHHHHHHHHhcCCh-hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHH
Q 048757 545 GVRQEAAGALWNLSFDD-RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIA 622 (864)
Q Consensus 545 ~v~~~a~~~L~~Ls~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~ 622 (864)
.++..|+++|++++... ..++.+.+.|+++.|++++.+ +++.++..|+++|++++.. +.....+.+.++++.|+.
T Consensus 249 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 325 (450)
T 2jdq_A 249 KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS---PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALIS 325 (450)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 99999999999999874 456677888999999999997 7899999999999999974 666777888999999999
Q ss_pred HHccCCHHHHHHHHHHHHHhcC--CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 623 LARSAVVDVHETAAGALWNLAF--NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 623 lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
+|+++++.++..|+++|++++. +++....+.+.|+++.|++++.+++ +.++..|+++|.++..
T Consensus 326 ~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 326 ILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMD-SKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSC-HHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 4556667888999999999999885 8899999999987754
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=2.2e-29 Score=290.28 Aligned_cols=372 Identities=20% Similarity=0.173 Sum_probs=324.7
Q ss_pred chhHHHHHhhcHHHHHHHHccC-CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHH
Q 048757 300 KEFDDFWLRQGATLLLSLMESS-QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEV 378 (864)
Q Consensus 300 ~~~~~~~~~~gv~~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a 378 (864)
+....++..+++|.|+++|+++ ++.++..|+++|++++.++.+ .+..+.+.|+++.|+.+|+++++.++..|
T Consensus 121 ~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-------~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A 193 (530)
T 1wa5_B 121 PPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-------QTKVVVDADAVPLFIQLLYTGSVEVKEQA 193 (530)
T ss_dssp CSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-------HHHHHHHTTCHHHHHHHHHHCCHHHHHHH
T ss_pred ccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-------HHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 3344555556699999999987 899999999999999876533 35678889999999999999999999999
Q ss_pred HHHHHHHhCC-chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhhCcHHHHHHHHcccCCCC
Q 048757 379 AKAIANLSVD-SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGE-DHKGAIARAGGIKALVDLIFKWSSWN 456 (864)
Q Consensus 379 ~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~ 456 (864)
+++|++++.+ ++.+..+...|+++.|+.++.+.++.++..|+++|++|+... .........|+++.|+.++. +++
T Consensus 194 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~---~~d 270 (530)
T 1wa5_B 194 IWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY---SMD 270 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT---CCC
T ss_pred HHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc---CCC
Confidence 9999999985 688999999999999999999999999999999999999764 44455667899999999996 467
Q ss_pred HHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHH
Q 048757 457 DGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEAL 535 (864)
Q Consensus 457 ~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L 535 (864)
+.++..++++|.+++...+ ....+.+.|+++.|+.++.+. ++.++..|+++|.+++.. ++.....+.+.|+++.|
T Consensus 271 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L 346 (530)
T 1wa5_B 271 TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTG---NDLQTQVVINAGVLPAL 346 (530)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcC---CHHHHHHHHHcchHHHH
Confidence 8999999999999998754 567778889999999999974 689999999999999975 45566777888999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC--c--hhhHH
Q 048757 536 VQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS--E--ANSIA 610 (864)
Q Consensus 536 ~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~--~--~~~~~ 610 (864)
+.+|.++++.++..|+++|.+++.. ++....+++.++++.|+.+|.+ +++.++..|+++|++++.. + +....
T Consensus 347 ~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~ 423 (530)
T 1wa5_B 347 RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV---AEYKTKKEACWAISNASSGGLQRPDIIRY 423 (530)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHTTTCTHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999999999999999999975 5667778889999999999997 8999999999999999864 4 67778
Q ss_pred hhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc------------cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHH
Q 048757 611 IGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG------------NALCIVEGGGVQALIHLCSSSLSKMARFMAA 678 (864)
Q Consensus 611 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~------------~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa 678 (864)
+.+.|++++|+.++.++++.++..|+++|.++....+ ....+.+.|+++.|..++.+++ +.++..|.
T Consensus 424 l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~-~~v~~~a~ 502 (530)
T 1wa5_B 424 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEN-DKIYEKAY 502 (530)
T ss_dssp HHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHH
Confidence 8899999999999999999999999999999986322 3457889999999999998876 88999999
Q ss_pred HHHHHhhcCCc
Q 048757 679 LALAYIVDGRM 689 (864)
Q Consensus 679 ~aL~~l~~~~~ 689 (864)
.+|.++.....
T Consensus 503 ~il~~~~~~~~ 513 (530)
T 1wa5_B 503 KIIETYFGEEE 513 (530)
T ss_dssp HHHHHHSSSCC
T ss_pred HHHHHHCCccc
Confidence 99998876654
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=4.4e-29 Score=282.07 Aligned_cols=370 Identities=20% Similarity=0.170 Sum_probs=317.7
Q ss_pred hhHHHHHh-hcHHHHHHHHccC-CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHH
Q 048757 301 EFDDFWLR-QGATLLLSLMESS-QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEV 378 (864)
Q Consensus 301 ~~~~~~~~-~gv~~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a 378 (864)
....++.. ++++.|+++|+++ ++++|..|+.+|.+++..+.+ ....+.+.|+++.|+++|+++++.++..|
T Consensus 55 ~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~~~i~~L~~lL~~~~~~vr~~a 127 (450)
T 2jdq_A 55 PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL-------QTRIVIQAGAVPIFIELLSSEFEDVQEQA 127 (450)
T ss_dssp CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH-------HHHHHHhCCCHHHHHHHHcCCCHHHHHHH
Confidence 33454544 5599999999988 899999999999999875533 34567789999999999999999999999
Q ss_pred HHHHHHHhCC-chhHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCC--CcHHHHHhhCcHHHHHHHHcccCC
Q 048757 379 AKAIANLSVD-SKVAKAVSENGGIDILADLARS-TNRLVAEEVVGGLWNLSVGE--DHKGAIARAGGIKALVDLIFKWSS 454 (864)
Q Consensus 379 ~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~L~~lL~~~~~ 454 (864)
+++|++++.+ ++.+..+.+.|+++.|++++++ .++.++..|+++|++++... .....+. .++++.|++++. +
T Consensus 128 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~---~ 203 (450)
T 2jdq_A 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLF---V 203 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTT---C
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHc---c
Confidence 9999999985 5788889999999999999985 78999999999999998653 3333333 789999999997 4
Q ss_pred CCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHH
Q 048757 455 WNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALE 533 (864)
Q Consensus 455 ~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~ 533 (864)
+++.++..++++|.+++.... ....+.+.|+++.|+.++.+ +++.++..|+++|.+++.. .+.....+.+.|+++
T Consensus 204 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~ 279 (450)
T 2jdq_A 204 SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH-NDYKVVSPALRAVGNIVTG---DDIQTQVILNCSALQ 279 (450)
T ss_dssp CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS---CHHHHHHHHTTTHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCC-CchhHHHHHHHHHHHHhhC---ChHHHHHHHHCccHH
Confidence 778999999999999998754 66777889999999999987 4689999999999999985 445566678889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc--CchhhHH
Q 048757 534 ALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL--SEANSIA 610 (864)
Q Consensus 534 ~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~--~~~~~~~ 610 (864)
.|+.++.++++.++..|+++|.+++.. ++....+.+.++++.|+.++.+ ++++++..|+++|++++. +++....
T Consensus 280 ~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~ 356 (450)
T 2jdq_A 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQT---AEFRTRKEAAWAITNATSGGSAEQIKY 356 (450)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999974 6677788889999999999998 899999999999999986 4566677
Q ss_pred hhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc------------cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHH
Q 048757 611 IGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG------------NALCIVEGGGVQALIHLCSSSLSKMARFMAA 678 (864)
Q Consensus 611 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~------------~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa 678 (864)
+.+.|+++.|+.++++++++++..|+++|.+++...+ ....+.+.|+++.|..+..+++ +.++..|.
T Consensus 357 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~-~~v~~~a~ 435 (450)
T 2jdq_A 357 LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHEN-QEIYQKAF 435 (450)
T ss_dssp HHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHH-HHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHH
Confidence 7889999999999999999999999999999987332 2457888999999999987775 78999999
Q ss_pred HHHHHhhcCCc
Q 048757 679 LALAYIVDGRM 689 (864)
Q Consensus 679 ~aL~~l~~~~~ 689 (864)
.++.++.....
T Consensus 436 ~~l~~~~~~~~ 446 (450)
T 2jdq_A 436 DLIEHYFGTED 446 (450)
T ss_dssp HHHHHHHCCC-
T ss_pred HHHHHHCCccc
Confidence 99999886554
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.9e-29 Score=268.52 Aligned_cols=270 Identities=26% Similarity=0.284 Sum_probs=237.1
Q ss_pred CCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcCCCC-cHHHHH
Q 048757 370 PPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARS-----------TNRLVAEEVVGGLWNLSVGED-HKGAIA 437 (864)
Q Consensus 370 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~-----------~~~~v~~~a~~aL~~Ls~~~~-~~~~i~ 437 (864)
+....+..|+++|++++.++++|..+++.|++++|+.+|.. .++.+++.|+++|.||+.+++ ++..+.
T Consensus 44 ~~~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGGGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34456668999999999999999999999999999999952 246799999999999998664 777776
Q ss_pred hh-CcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCC--CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhh
Q 048757 438 RA-GGIKALVDLIFKWSSWNDGVLERAAGALANLAAD--DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVA 514 (864)
Q Consensus 438 ~~-g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~--~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~ 514 (864)
.. |+||+|+++|. ++++++++.|+++|+||+.. ++++..+.+.|+++.|+++|....++++++.|+.+|++|+.
T Consensus 124 ~~~GaIp~LV~LL~---s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 124 SMKGCMRALVAQLK---SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HCHHHHHHHHHGGG---CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCcHHHHHHHHC---CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 54 55999999997 57899999999999999985 34789999999999999986554568899999999999998
Q ss_pred cCCCCcccchhhh-ccChHHHHHHHhcCCCH----HHHHHHHHHHHHhcC----ChhhHHHHHHCCChHHHHHHHHhcCC
Q 048757 515 HGDSNSNNAAVGL-ETGALEALVQLTFSKHE----GVRQEAAGALWNLSF----DDRNREAIAAAGGVEALVALVRSCSS 585 (864)
Q Consensus 515 ~~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~a~~~L~~Ls~----~~~~~~~i~~~~~i~~Lv~lL~~~~~ 585 (864)
+ .++++..+. ..|+++.|+++|.+.++ ++++.|+++|+||+. ++++++.+.+.|+++.|+++|.+
T Consensus 201 ~---~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~--- 274 (354)
T 3nmw_A 201 H---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS--- 274 (354)
T ss_dssp T---CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC---
T ss_pred c---ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC---
Confidence 4 345566666 89999999999987654 599999999999995 78899999999999999999997
Q ss_pred CCHHHHHHHHHHHHHhcc-CchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCccc
Q 048757 586 SSQGLQERAAGALWGLSL-SEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGN 648 (864)
Q Consensus 586 ~~~~v~~~A~~aL~~L~~-~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 648 (864)
++.++++.|+++|+|++. +++.+..+.+.|++++|+++|+++++.+++.|+++|.||+.+.+.
T Consensus 275 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred CChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 899999999999999995 688999999999999999999999999999999999999986543
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=5.2e-29 Score=266.61 Aligned_cols=273 Identities=27% Similarity=0.329 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc--------CCCCHHHHHHHHHHHHHhcCCCc-chHHHHhc
Q 048757 413 RLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW--------SSWNDGVLERAAGALANLAADDK-CSLEVARA 483 (864)
Q Consensus 413 ~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~--------~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~ 483 (864)
...+..|+++|+|++.++++|..|.+.|++++|+.+|... ...++.++..|+++|.||+..++ .+..+...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 3455689999999999999999999999999999999521 11246799999999999998876 66667555
Q ss_pred -CcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHH-hcCCCHHHHHHHHHHHHHhcC-C
Q 048757 484 -GGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQL-TFSKHEGVRQEAAGALWNLSF-D 560 (864)
Q Consensus 484 -~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~Ls~-~ 560 (864)
|.||.|+.+|+++ ++++++.|+++|++|+... ++.++..+.+.|+++.|+++ +++.++++++.|+.+|+||+. .
T Consensus 126 ~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~--~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 126 KGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRA--DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTC--CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccC--CHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 4599999999984 6899999999999999731 45688899999999999997 567889999999999999999 6
Q ss_pred hhhHHHHH-HCCChHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcc----CchhhHHhhhcCCHHHHHHHHccCCHHH
Q 048757 561 DRNREAIA-AAGGVEALVALVRSCSSSSQ----GLQERAAGALWGLSL----SEANSIAIGREGGVAPLIALARSAVVDV 631 (864)
Q Consensus 561 ~~~~~~i~-~~~~i~~Lv~lL~~~~~~~~----~v~~~A~~aL~~L~~----~~~~~~~i~~~~~i~~Lv~lL~~~~~~v 631 (864)
++++..+. ..|+++.|+++|.+ +++ ++++.|+++|++++. +++++..+.+.|++++|+.+|++++..+
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~---~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 279 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTY---RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 279 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTC---CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhcc---CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHH
Confidence 78888887 68999999999986 332 699999999999996 7889999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccce
Q 048757 632 HETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDI 692 (864)
Q Consensus 632 ~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~ 692 (864)
++.|+++|+||+. +++++..+.+.|++|.|++++.+++ +.++..|+++|.++..++++.+
T Consensus 280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~-~~i~~~A~~aL~nL~~~~~~~~ 340 (354)
T 3nmw_A 280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKH-KMIAMGSAAALRNLMANRPAKY 340 (354)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSS-HHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999995 7889999999999999999999886 8899999999999999988553
No 27
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2.7e-24 Score=244.06 Aligned_cols=366 Identities=14% Similarity=0.073 Sum_probs=297.2
Q ss_pred chhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHH
Q 048757 300 KEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVA 379 (864)
Q Consensus 300 ~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~ 379 (864)
+..+.++.+..++.|.+.+++ +.+|..|+.+|..+........ ..+ ....+.+.+.|.+++.+.+..|+
T Consensus 287 ~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~-------~si--~~La~~~~~~L~~~~~~~~~~Av 355 (778)
T 3opb_A 287 ETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTC-------INL--KQLSEIFINAISRRIVPKVEMSV 355 (778)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTT-------CCH--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCc-------CcH--HHHHHHHHHHHhcCCccHHHHHH
Confidence 445777777779999999976 5789999999999876443210 011 12456777888887777799999
Q ss_pred HHHHHHhCCchhHHHHHhcCc-HHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCC--------------------------
Q 048757 380 KAIANLSVDSKVAKAVSENGG-IDILADLARS-TNRLVAEEVVGGLWNLSVGED-------------------------- 431 (864)
Q Consensus 380 ~~L~~L~~~~~~~~~i~~~g~-i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~-------------------------- 431 (864)
+.|+.++.++++|..+++..+ ++.|++++++ .+..+...++.+|.||+.+.+
T Consensus 356 EgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~ 435 (778)
T 3opb_A 356 EALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKV 435 (778)
T ss_dssp HHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------C
T ss_pred HHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcc
Confidence 999999999999999998877 9999999985 777899999999999977322
Q ss_pred -------------cHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCc
Q 048757 432 -------------HKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMF 498 (864)
Q Consensus 432 -------------~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~ 498 (864)
++..+.+.|+++.|+.++. ++++.+++.|+++|.+|+.+.++|..+++.|+++.|+.++.+.+.
T Consensus 436 d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~---S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~ 512 (778)
T 3opb_A 436 GAEKAAKEDILLFNEKYILRTELISFLKREMH---NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQD 512 (778)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGG---GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC--
T ss_pred cccccchHHHHHHHHHHHHHCcCHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCC
Confidence 3455678899999999997 478899999999999999999999999999999999999988643
Q ss_pred h--hHHHHHHHHHHHHhhcCCCCcccchhh---hccChHHHHHHHhcC-CCH-------------HHHHHHHHHHHHhcC
Q 048757 499 E--GVQEQAARALANLVAHGDSNSNNAAVG---LETGALEALVQLTFS-KHE-------------GVRQEAAGALWNLSF 559 (864)
Q Consensus 499 ~--~v~~~a~~aL~~L~~~~~~~~~~~~~~---~~~~~i~~L~~lL~~-~~~-------------~v~~~a~~~L~~Ls~ 559 (864)
. ..+..|+.||.+|.... ++.. .+ ...|++++|+.+|.. +.. -.+.+|+.+|.||+.
T Consensus 513 ~~~~~k~~AA~ALArLlis~--np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs 588 (778)
T 3opb_A 513 IGEPIRILGCRALTRMLIFT--NPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS 588 (778)
T ss_dssp -CCHHHHHHHHHHHHHHHTS--CHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcC--CHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc
Confidence 2 27999999999999642 2222 11 113899999999982 211 137799999999999
Q ss_pred Ch-----hhHHHHHHC-CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhh-HHhhhcC------CHHHHHHHHcc
Q 048757 560 DD-----RNREAIAAA-GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANS-IAIGREG------GVAPLIALARS 626 (864)
Q Consensus 560 ~~-----~~~~~i~~~-~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~-~~i~~~~------~i~~Lv~lL~~ 626 (864)
.+ +.|..|++. |+++.|..++.+ +++.+|.+|+++++||+.++... ..+.+.+ .+++|+.++++
T Consensus 589 ~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s---~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s 665 (778)
T 3opb_A 589 SETSDGEEVCKHIVSTKVYWSTIENLMLD---ENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL 665 (778)
T ss_dssp CCSHHHHHHHHHHHHSHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC
T ss_pred CCcccchHHHHHHHHhcCHHHHHHHHHhC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC
Confidence 86 347888885 999999999997 88999999999999999987764 3554322 48899999999
Q ss_pred CCHHHHHHHHHHHHHhc-CCcccHHHHHhC-CcHHHHHHHhcCC-CcHHHHHHHHHHHHHhhc
Q 048757 627 AVVDVHETAAGALWNLA-FNPGNALCIVEG-GGVQALIHLCSSS-LSKMARFMAALALAYIVD 686 (864)
Q Consensus 627 ~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~-g~v~~L~~ll~~~-~~~~~r~~aa~aL~~l~~ 686 (864)
++.+++..|+++|.+++ .++.....+.+. ++++.|++++.+. +++.+|..++.++.||+.
T Consensus 666 ~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 666 SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999996 588888888887 8999999999882 348999999999999996
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=3.6e-23 Score=213.69 Aligned_cols=239 Identities=33% Similarity=0.428 Sum_probs=219.0
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
++++.|+++|++++++++..|+.+|.+++..+++ .+..+.+.|+++.|+++|+++++.++..++++|++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~-------~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPAS-------AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHH-------HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH-------HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 3589999999999999999999999999876643 467788999999999999999999999999999999997
Q ss_pred -chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc-CCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHH
Q 048757 389 -SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLS-VGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGA 466 (864)
Q Consensus 389 -~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls-~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~ 466 (864)
++.+..+.+.|+++.|+.+++++++.++..|+++|++++ .+++++..+.+.|+++.|++++. ++++.++..++++
T Consensus 75 ~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~---~~~~~~~~~a~~~ 151 (252)
T 4hxt_A 75 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT---STDSEVQKEAARA 151 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT---CSCHHHHHHHHHH
T ss_pred ChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc---CCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999 57788999999999999999997 4778999999999
Q ss_pred HHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHH
Q 048757 467 LANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEG 545 (864)
Q Consensus 467 L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 545 (864)
|++++..++ .+..+.+.|+++.|+.++.+ +++.++..++++|.+++.. ++..+..+.+.|+++.|++++++++++
T Consensus 152 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~ 227 (252)
T 4hxt_A 152 LANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASG---PTSAIKAIVDAGGVEVLQKLLTSTDSE 227 (252)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTS---BHHHHHHHHHTTHHHHHHHGGGCSCHH
T ss_pred HHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CCHHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHCCCcHH
Confidence 999998765 55788899999999999998 4689999999999999984 667788899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCh
Q 048757 546 VRQEAAGALWNLSFDD 561 (864)
Q Consensus 546 v~~~a~~~L~~Ls~~~ 561 (864)
+++.|+++|+||+...
T Consensus 228 v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 228 VQKEAQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999997654
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.91 E-value=5.7e-23 Score=212.17 Aligned_cols=238 Identities=35% Similarity=0.448 Sum_probs=218.4
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc-hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHHH
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSVDS-KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKGA 435 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~~ 435 (864)
|+++.|+++|++++++++..|+++|.+++... +.+..+.+.|+++.|+++++++++.++..|+.+|++++.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 56899999999999999999999999999854 6999999999999999999999999999999999999986 789999
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCC-CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhh
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAAD-DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVA 514 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~ 514 (864)
+.+.|+++.|+.++. +++++++..|+++|++++.. ++.+..+.+.|+++.|++++++. ++.++..++++|.+++.
T Consensus 82 ~~~~~~i~~l~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLT---STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHTTHHHHHHHHTT---CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHc---CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 999999999999997 47899999999999999954 55888899999999999999985 58999999999999998
Q ss_pred cCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHH
Q 048757 515 HGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQER 593 (864)
Q Consensus 515 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~ 593 (864)
. ++..+..+.+.|+++.|++++.++++.++..|+++|++++.. +..+..+.+.|+++.|++++.+ +++.+++.
T Consensus 158 ~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~ 231 (252)
T 4hxt_A 158 G---PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTS---TDSEVQKE 231 (252)
T ss_dssp S---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHH
T ss_pred C---CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCC---CcHHHHHH
Confidence 5 556667888999999999999999999999999999999985 6678889999999999999997 89999999
Q ss_pred HHHHHHHhccCc
Q 048757 594 AAGALWGLSLSE 605 (864)
Q Consensus 594 A~~aL~~L~~~~ 605 (864)
|+++|++++...
T Consensus 232 a~~~L~~l~~~~ 243 (252)
T 4hxt_A 232 AQRALENIKSGG 243 (252)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 999999998653
No 30
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.7e-23 Score=234.80 Aligned_cols=348 Identities=13% Similarity=0.060 Sum_probs=272.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHH-hCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhCC
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILR-HGGVRLLLDLARS-PPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~~ 388 (864)
.+.+.++|.+++.+.+..|++.|..++...+ .++.+++ .+.++.|+.++++ .+..+...++.+|.||+..
T Consensus 336 a~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~--------VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~ 407 (778)
T 3opb_A 336 SEIFINAISRRIVPKVEMSVEALAYLSLKAS--------VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTL 407 (778)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH--------HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCHH--------HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Confidence 4667777777776679999999999875443 4566664 4559999999995 7888999999999999883
Q ss_pred ch---------------------------------------hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 048757 389 SK---------------------------------------VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG 429 (864)
Q Consensus 389 ~~---------------------------------------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~ 429 (864)
++ ++..+.+.|+++.|+.+++++++.+++.|+++|.+|+.+
T Consensus 408 ~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d 487 (778)
T 3opb_A 408 PEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS 487 (778)
T ss_dssp CCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS
T ss_pred CcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 21 467788999999999999999999999999999999999
Q ss_pred CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHh---cCcHHHHHHHHHccCc--------
Q 048757 430 EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVAR---AGGVHALVMLARSFMF-------- 498 (864)
Q Consensus 430 ~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~---~~~i~~Lv~ll~~~~~-------- 498 (864)
+++|..+++.|++++|++++.+.+......+..|+.+|.++....+....+.. .|++++|+.+|...+.
T Consensus 488 ~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~ 567 (778)
T 3opb_A 488 KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN 567 (778)
T ss_dssp GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence 99999999999999999999752211123899999999999966543333211 3889999999983111
Q ss_pred ----hhH-HHHHHHHHHHHhhcCCCC-cccchhhhc-cChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhH-HHHHHC
Q 048757 499 ----EGV-QEQAARALANLVAHGDSN-SNNAAVGLE-TGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNR-EAIAAA 570 (864)
Q Consensus 499 ----~~v-~~~a~~aL~~L~~~~~~~-~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~-~~i~~~ 570 (864)
+.+ +..|+.||.||+..+++. ++.+..++. .|+++.|.++|.+++..+|++|++++.||+.+++.+ +.+.+.
T Consensus 568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~ 647 (778)
T 3opb_A 568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNL 647 (778)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCC
T ss_pred cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhh
Confidence 112 668999999999964210 234666666 499999999999999999999999999999988764 344332
Q ss_pred C------ChHHHHHHHHhcCCCCHHHHHHHHHHHHHhc-cCchhhHHhhhc-CCHHHHHHHHcc--CCHHHHHHHHHHHH
Q 048757 571 G------GVEALVALVRSCSSSSQGLQERAAGALWGLS-LSEANSIAIGRE-GGVAPLIALARS--AVVDVHETAAGALW 640 (864)
Q Consensus 571 ~------~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~-~~~~~~~~i~~~-~~i~~Lv~lL~~--~~~~v~~~a~~aL~ 640 (864)
+ .++.|+.++.. ++.++|.+|+++|++++ .++..+..+.+. ++++.++.++++ ++++++..++.+++
T Consensus 648 ~~~~~~~rL~lLV~Ll~s---~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 648 ENPQSLRNFNILVKLLQL---SDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp SSHHHHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCchhhccHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 2 37789999986 99999999999999996 567787788875 899999999999 89999999999999
Q ss_pred HhcC-Cc-----ccHHHHH-hCCcHHHHHHHhcCCC
Q 048757 641 NLAF-NP-----GNALCIV-EGGGVQALIHLCSSSL 669 (864)
Q Consensus 641 ~L~~-~~-----~~~~~i~-~~g~v~~L~~ll~~~~ 669 (864)
||+. .+ +.-..+. .......|..++++++
T Consensus 725 NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~ 760 (778)
T 3opb_A 725 GLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGD 760 (778)
T ss_dssp HHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSS
T ss_pred HHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCC
Confidence 9995 21 1222333 3344666777776654
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=5.9e-23 Score=212.16 Aligned_cols=235 Identities=28% Similarity=0.349 Sum_probs=214.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-Cc
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DS 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~ 389 (864)
.+.++++|+++|++++..|+.+|.++...+++ .+..+.+.|+++.|+++|+++++.++..|+++|++++. ++
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~-------~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNE-------QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHH-------HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCc-------hHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCH
Confidence 68899999999999999999999886654322 45678899999999999999999999999999999998 78
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcH-HHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHK-GAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~-~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
+.+..+.+.|+++.|+++|+++++.+++.|+++|++++.+++.+ ..+.+.|+++.|++++. +++..++..|+++|+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~ 163 (252)
T 4db8_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS---SPNEQILQEALWALS 163 (252)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG---CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888 88999999999999997 468899999999999
Q ss_pred HhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHH
Q 048757 469 NLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVR 547 (864)
Q Consensus 469 ~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 547 (864)
+++..++ ....+.+.|+++.|+.++.++ ++.++..|+++|.+++.. ++..+..+.+.|+++.|++++.+.+++++
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~v~ 239 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASG---GNEQKQAVKEAGALEKLEQLQSHENEKIQ 239 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTS---CHHHHHHHHHTTHHHHHHTTTTCSSSHHH
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcC---CHHHHHHHHHCCcHHHHHHHhCCCCHHHH
Confidence 9998764 667788999999999999985 689999999999999974 66778888999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 048757 548 QEAAGALWNLSF 559 (864)
Q Consensus 548 ~~a~~~L~~Ls~ 559 (864)
..|+++|.+|+.
T Consensus 240 ~~A~~~L~~l~~ 251 (252)
T 4db8_A 240 KEAQEALEKLQS 251 (252)
T ss_dssp HTHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999999974
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.90 E-value=1e-22 Score=210.44 Aligned_cols=237 Identities=29% Similarity=0.333 Sum_probs=216.2
Q ss_pred hCCHHHHHHHhcCCCHHHHHHHHHHHHHH-hCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHH
Q 048757 357 HGGVRLLLDLARSPPEGLQSEVAKAIANL-SVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKG 434 (864)
Q Consensus 357 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~ 434 (864)
...++.++..|.+++++++..|+++|.++ +.+++.+..+.+.|+++.|+++|+++++.++..|+.+|++++. +++++.
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 45689999999999999999999999774 4467888899999999999999999999999999999999997 678999
Q ss_pred HHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcch-HHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHh
Q 048757 435 AIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCS-LEVARAGGVHALVMLARSFMFEGVQEQAARALANLV 513 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~-~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~ 513 (864)
.+.+.|+++.|++++.+ +++.+++.|+++|++++..++.+ ..+.+.|+++.|+.++.++ ++.++..++++|.+|+
T Consensus 91 ~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~ 166 (252)
T 4db8_A 91 AVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA 166 (252)
T ss_dssp HHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 99999999999999974 78899999999999999998877 8889999999999999885 6899999999999999
Q ss_pred hcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHH
Q 048757 514 AHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQE 592 (864)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~ 592 (864)
.. ++..+..+.+.|+++.|++++.++++.++..|+++|++++.. ++.+..+.+.|+++.|++++.+ ++++++.
T Consensus 167 ~~---~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~ 240 (252)
T 4db8_A 167 SG---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH---ENEKIQK 240 (252)
T ss_dssp TS---CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC---SSSHHHH
T ss_pred cC---ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC---CCHHHHH
Confidence 85 556777888899999999999999999999999999999964 6778888999999999999987 8899999
Q ss_pred HHHHHHHHhcc
Q 048757 593 RAAGALWGLSL 603 (864)
Q Consensus 593 ~A~~aL~~L~~ 603 (864)
.|+++|++++.
T Consensus 241 ~A~~~L~~l~~ 251 (252)
T 4db8_A 241 EAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTC-
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 33
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=191.91 Aligned_cols=197 Identities=21% Similarity=0.287 Sum_probs=172.6
Q ss_pred HHHHHHHHccCCH--HHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-
Q 048757 311 ATLLLSLMESSQQ--EVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV- 387 (864)
Q Consensus 311 v~~L~~lL~~~~~--~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~- 387 (864)
+|.|+++|+++++ +++..|+..|.+++..+++ .+..+.+.|+||+|+++|+++++++|..|+++|++|+.
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~-------~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSE-------ARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHH-------HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcH-------HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 7999999999887 9999999999999977654 36789999999999999999999999999999999998
Q ss_pred CchhHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcc----c---------C
Q 048757 388 DSKVAKAVSENGGIDILADLAR-STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFK----W---------S 453 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~----~---------~ 453 (864)
+++++..+.+.|+||+|+++|+ +.+.++++.|+.+||+|+..++++..|.+. ++++|++++.. + .
T Consensus 83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence 6899999999999999999998 578999999999999999999999999875 79999987631 1 1
Q ss_pred CCCHHHHHHHHHHHHHhcCCC-cchHHHHhc-CcHHHHHHHHHcc-----CchhHHHHHHHHHHHHhhc
Q 048757 454 SWNDGVLERAAGALANLAADD-KCSLEVARA-GGVHALVMLARSF-----MFEGVQEQAARALANLVAH 515 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~-~~~~~i~~~-~~i~~Lv~ll~~~-----~~~~v~~~a~~aL~~L~~~ 515 (864)
..+.+++++|+++|+||+..+ +.|..+++. |.|+.|+.+++.+ .+...+++++.+|+||+..
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 236799999999999999865 689999876 5589999999863 2356789999999999973
No 34
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=191.04 Aligned_cols=197 Identities=20% Similarity=0.203 Sum_probs=172.7
Q ss_pred CCHHHHHHHhcCCCH--HHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcH
Q 048757 358 GGVRLLLDLARSPPE--GLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHK 433 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~--~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~ 433 (864)
-.+|.++++|+++++ +++..|+++|.+++. +++++..+.+.|+||+|+++|+++++++++.|+++|.||+. +++++
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 358999999999888 899999999999996 78899999999999999999999999999999999999997 57899
Q ss_pred HHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHH---cc------------Cc
Q 048757 434 GAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLAR---SF------------MF 498 (864)
Q Consensus 434 ~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~---~~------------~~ 498 (864)
..|.+.|+|++|+++|.+ +++.++++.|+.+|+||+..++++..+.+ ++++.|+.++. ++ .+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~--~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQ--TRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHTTHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999974 46789999999999999999889988887 47999988652 11 24
Q ss_pred hhHHHHHHHHHHHHhhcCCCCcccchhhhcc-ChHHHHHHHhcC------CCHHHHHHHHHHHHHhcCC
Q 048757 499 EGVQEQAARALANLVAHGDSNSNNAAVGLET-GALEALVQLTFS------KHEGVRQEAAGALWNLSFD 560 (864)
Q Consensus 499 ~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~~Ls~~ 560 (864)
++++++|+.+|+||+.. .++.|+.+.+. |+|+.|+.+++. .+...++.++.+|+||+..
T Consensus 165 ~~v~~na~~~L~nLss~---~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSA---GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTS---CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcC---CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 68999999999999985 45788888765 778999999875 2557899999999999864
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.84 E-value=5.9e-20 Score=183.76 Aligned_cols=198 Identities=25% Similarity=0.245 Sum_probs=178.5
Q ss_pred HhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcC-
Q 048757 481 ARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSF- 559 (864)
Q Consensus 481 ~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~- 559 (864)
...++.+.|+.++++. +++++..|+++|.+++.. +++.+..+.+.|+++.|+++|.+++++++..|+++|++++.
T Consensus 9 ~~~~~~~~l~~LL~s~-~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 9 HHGSELPQMVQQLNSP-DQQELQSALRKLSQIASG---GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (210)
T ss_dssp ----CHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS---CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred cccchhHHHHHHhcCC-CHHHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 3467899999999884 699999999999999974 66788889999999999999999999999999999999996
Q ss_pred ChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHH
Q 048757 560 DDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGA 638 (864)
Q Consensus 560 ~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~a 638 (864)
+++.+..+.+.|+++.|+.+|.+ +++.++..|+++|++++.. +..+..+.+.|+++.|+++++++++.++..|+++
T Consensus 85 ~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 85 GNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC---CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 57788999999999999999997 8999999999999999975 6667788899999999999999999999999999
Q ss_pred HHHhcCC-cccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhc
Q 048757 639 LWNLAFN-PGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVD 686 (864)
Q Consensus 639 L~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~ 686 (864)
|.+++.+ ++.+..+.+.|+++.|++++.+++ +.+|..|+++|.+++.
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHhc
Confidence 9999986 778889999999999999999875 8899999999998864
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.84 E-value=1.1e-19 Score=181.79 Aligned_cols=197 Identities=28% Similarity=0.343 Sum_probs=179.6
Q ss_pred HhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcH
Q 048757 356 RHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHK 433 (864)
Q Consensus 356 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~ 433 (864)
..++.+.|+.+|+++++.++..|+++|++++. +++.+..+.+.|+++.|+++|+++++.+++.|+++|++++. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 47889999999999999999999999999995 67899999999999999999999999999999999999995 66888
Q ss_pred HHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHH
Q 048757 434 GAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANL 512 (864)
Q Consensus 434 ~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L 512 (864)
..+.+.|+++.|++++. ++++.++..|+++|++++..++ ....+.+.|+++.|+++++++ +++++..|+++|.++
T Consensus 90 ~~i~~~g~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 90 QAVIDAGALPALVQLLS---SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHTTCHHHHHHHTT---CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHc---CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 99999999999999997 4688999999999999998655 567788999999999999985 689999999999999
Q ss_pred hhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 048757 513 VAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSF 559 (864)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~ 559 (864)
+.. ++..+..+.+.|+++.|++++.++++++++.|+++|.+|+.
T Consensus 166 ~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 166 ASG---GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HTS---CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HcC---CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 985 56788889999999999999999999999999999999975
No 37
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=5.7e-18 Score=176.07 Aligned_cols=225 Identities=17% Similarity=0.155 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHH
Q 048757 372 EGLQSEVAKAIANLSVDSKVAKAVSENGGIDILAD-LARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLI 449 (864)
Q Consensus 372 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL 449 (864)
.+-+..|+..|.+++.+.++...+.+.|++++|+. +|+++++.+++.|+++|++++. ++..+..+++.|++++|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 46778899999999999899999999999999999 9999999999999999999987 467889999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhc
Q 048757 450 FKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLE 528 (864)
Q Consensus 450 ~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~ 528 (864)
.. +.+..+++.|+++|++++.+.. ....+.+.|+++.|+.+++++ ++.++..|+++|.+++.. +++.+..+++
T Consensus 134 ~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~---~~~~~~~vv~ 207 (296)
T 1xqr_A 134 DR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVG---HPEHKGTLCS 207 (296)
T ss_dssp HH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred cc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhC---ChHHHHHHHH
Confidence 84 3468999999999999998765 567888899999999999985 689999999999999986 5678889999
Q ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhh-HHHHHHC-CChHHH----HHHHHhcCCCCHHHHHHHHHHHHHhc
Q 048757 529 TGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRN-REAIAAA-GGVEAL----VALVRSCSSSSQGLQERAAGALWGLS 602 (864)
Q Consensus 529 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~-~~~i~~~-~~i~~L----v~lL~~~~~~~~~v~~~A~~aL~~L~ 602 (864)
.|+++.|+.+|.+++.++++.|+.+|.+|+...+. ....... ..+..+ ++-++. +....++.+.|..++-++.
T Consensus 208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~-~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQ-HEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTT-CGGGHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999887332 2222211 112111 222221 0124566667777776654
Q ss_pred c
Q 048757 603 L 603 (864)
Q Consensus 603 ~ 603 (864)
.
T Consensus 287 ~ 287 (296)
T 1xqr_A 287 S 287 (296)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.78 E-value=4.7e-18 Score=176.73 Aligned_cols=224 Identities=20% Similarity=0.179 Sum_probs=184.3
Q ss_pred CHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHH-HHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHH
Q 048757 412 NRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVD-LIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHAL 489 (864)
Q Consensus 412 ~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~L 489 (864)
+.+-+..|+..|.+++.+.++...+.+.|++++|+. +|. ++++.+++.|+++|++++.+++ ++..+++.|+++.|
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~---s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~L 129 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE---AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH
Confidence 345778899999999998889999999999999999 996 5789999999999999998865 88889999999999
Q ss_pred HHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHH
Q 048757 490 VMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIA 568 (864)
Q Consensus 490 v~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~ 568 (864)
+.++++.+++.++..|++||.+++.+ ++.....+.+.|+++.|+.+|+++++.++..|+++|.+++.. ++.+..++
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~---~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVRE---QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcC---CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999755689999999999999985 556667788899999999999999999999999999999875 67899999
Q ss_pred HCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhc-CCHHHH----HHHHccC--CHHHHHHHHHHHH
Q 048757 569 AAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGRE-GGVAPL----IALARSA--VVDVHETAAGALW 640 (864)
Q Consensus 569 ~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~-~~i~~L----v~lL~~~--~~~v~~~a~~aL~ 640 (864)
+.|++++|+.+|.+ +++.+++.|+.+|+++... +.....+... ..+..+ ++-++.. ..++.+.|...+.
T Consensus 207 ~~g~i~~Lv~LL~~---~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~ 283 (296)
T 1xqr_A 207 SMGMVQQLVALVRT---EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ 283 (296)
T ss_dssp HTTHHHHHHHHHTS---CCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHcC---CChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 99999999999997 7899999999999999987 3333333321 122221 2333322 3566677777777
Q ss_pred HhcC
Q 048757 641 NLAF 644 (864)
Q Consensus 641 ~L~~ 644 (864)
++..
T Consensus 284 ~~f~ 287 (296)
T 1xqr_A 284 TCFS 287 (296)
T ss_dssp HHCC
T ss_pred HHcC
Confidence 7664
No 39
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=2.8e-18 Score=185.26 Aligned_cols=208 Identities=19% Similarity=0.240 Sum_probs=98.1
Q ss_pred cCCCCCCeecCCCCCCCHHHHHHHHh---------------------cCCCCcEEEecCCCCchH-HHH--hCCccccee
Q 048757 4 SSPCLWSSLDLRPYKFDTSAAESLSS---------------------RCTNLQALWFRGALSADA-MII--LQARRLREI 59 (864)
Q Consensus 4 ~~p~lw~~ldL~~~~~~~~~l~~i~~---------------------~~~~L~~L~l~~~~~~~~-l~~--~~~~~L~~L 59 (864)
.+|.+|+++|++++.+.+..+..+.. .+++|++|++++|...+. +.. ..+++|++|
T Consensus 44 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 44 SDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred cCchhheeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 56899999999998888766655522 124444444444432211 111 144455555
Q ss_pred eeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCC-CccE
Q 048757 60 NVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCR-QLVE 138 (864)
Q Consensus 60 ~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~L~~ 138 (864)
++++|. +++.....+.. +++|++|++ ++|..+++.++..+...|++|++|++++|..+++.++..+..++| +|++
T Consensus 124 ~L~~~~-l~~~~~~~l~~-~~~L~~L~L--~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~ 199 (336)
T 2ast_B 124 SLEGLR-LSDPIVNTLAK-NSNLVRLNL--SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199 (336)
T ss_dssp ECTTCB-CCHHHHHHHTT-CTTCSEEEC--TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCE
T ss_pred eCcCcc-cCHHHHHHHhc-CCCCCEEEC--CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCE
Confidence 555443 44444443322 445555555 444444444444444444555555555543344444444444444 5555
Q ss_pred EeccCCC-CCCHHHhc----CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCC-CCCHHHHHHHhcCCCCCcEE
Q 048757 139 VGFIDSG-GVDEAALE----NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRT-NINLSSVTRLLSSSRNLKVL 212 (864)
Q Consensus 139 L~l~~c~-~i~~~~~~----~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~-~~~~~~l~~~~~~~~~L~~L 212 (864)
|++++|. .+++..+. ++++|++|++++|..+++..+..+ ..+++|+.|+++++ ...+..+ ..+..+++|+.|
T Consensus 200 L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L 277 (336)
T 2ast_B 200 LNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTL 277 (336)
T ss_dssp EECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGG-GGGGGCTTCCEE
T ss_pred EEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHH-HHHhcCCCCCEE
Confidence 5555443 34433222 444555555554444444433333 23445555555442 2222222 122334445555
Q ss_pred EccCC
Q 048757 213 IALNC 217 (864)
Q Consensus 213 ~~~~c 217 (864)
++.+|
T Consensus 278 ~l~~~ 282 (336)
T 2ast_B 278 QVFGI 282 (336)
T ss_dssp ECTTS
T ss_pred eccCc
Confidence 55544
No 40
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=8.6e-18 Score=181.40 Aligned_cols=211 Identities=18% Similarity=0.318 Sum_probs=174.5
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHH--hCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMII--LQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~--~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
...++.|||+++.+....+..+...|++|++|++++|...+..+. ..+++|++|++++|..+++.++..+...+++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 356889999999888877888889999999999999975544222 279999999999998899999998888999999
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCc-CcCeeeecccC-CCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc---CCCCc
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCP-KLRRLWLSGVR-EVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE---NLSSV 158 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~-~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~---~~~~L 158 (864)
+|++ ++|..+++.++..+...+| +|++|++++|. .+++..+..+..+||+|++|++++|..+++..+. .+++|
T Consensus 172 ~L~l--~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 172 ELNL--SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp EEEC--CCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred EEcC--CCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 9999 8887899998888888999 99999999996 5999999888888999999999999878876655 88999
Q ss_pred CEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 159 RYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 159 ~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
++|++++|..+++.++..+ .++++|+.|+++++ ++...+..+...++.|+ + +|..++...
T Consensus 250 ~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~---l-~~n~l~~~~ 309 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLEL-GEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---I-NCSHFTTIA 309 (336)
T ss_dssp CEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---E-SCCCSCCTT
T ss_pred CEeeCCCCCCCCHHHHHHH-hcCCCCCEEeccCc-cCHHHHHHHHhhCcceE---E-ecccCcccc
Confidence 9999999998888877556 46999999999995 44333333333335555 4 566666554
No 41
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.1e-16 Score=187.10 Aligned_cols=207 Identities=14% Similarity=0.190 Sum_probs=117.2
Q ss_pred CCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH--HhCCcccceeeeec----------CCCCCHHHHHHH
Q 048757 8 LWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMI--ILQARRLREINVEF----------CRELTDAIFSAI 75 (864)
Q Consensus 8 lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~--~~~~~~L~~L~l~~----------c~~l~d~~l~~l 75 (864)
.+++|+|+++.++...+..+...|++|++|+++++.....+. ...|++|++|++++ |..+++.++..+
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l 373 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence 455566665555555555555566666666665332111111 12556666666663 556666666665
Q ss_pred HhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecc---cCCCcH----HHHHHHHhcCCCccEEeccCCCC-C
Q 048757 76 VARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSG---VREVNG----DAINALAKQCRQLVEVGFIDSGG-V 147 (864)
Q Consensus 76 ~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~---~~~l~~----~~l~~l~~~~~~L~~L~l~~c~~-i 147 (864)
...|++|++|++ +|..+++.++..++..|++|++|++++ |..+++ +++..+..+|++|++|++++|.+ +
T Consensus 374 ~~~~~~L~~L~l---~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l 450 (592)
T 3ogk_B 374 AQGCQELEYMAV---YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450 (592)
T ss_dssp HHHCTTCSEEEE---EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGC
T ss_pred HhhCccCeEEEe---ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCc
Confidence 555666666666 255566666666665566666666653 334543 35555555566666666655442 5
Q ss_pred CHHHhc----CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCC
Q 048757 148 DEAALE----NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCP 218 (864)
Q Consensus 148 ~~~~~~----~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~ 218 (864)
++.++. .+++|++|++++|. +++.++..+..+|++|+.|+++++..+...+..+...+++|+.|++++|+
T Consensus 451 ~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 451 TDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 555444 46666666666553 56656555555666666666666555555555555555666666666666
No 42
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=1.9e-16 Score=185.11 Aligned_cols=207 Identities=19% Similarity=0.254 Sum_probs=181.6
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH--HhCCcccceeee--------ecCCCCCHHHHHHHH
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMI--ILQARRLREINV--------EFCRELTDAIFSAIV 76 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~--~~~~~~L~~L~l--------~~c~~l~d~~l~~l~ 76 (864)
+.+++|+|+++.++...+..+...|++|++|++++|.....+. ...|++|++|++ .+|..+++.++..+.
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 5789999999988888888888999999999999983222222 236999999999 456789999999999
Q ss_pred hCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeec-----ccCCCc----HHHHHHHHhcCCCccEEeccCCCCC
Q 048757 77 ARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLS-----GVREVN----GDAINALAKQCRQLVEVGFIDSGGV 147 (864)
Q Consensus 77 ~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~-----~~~~l~----~~~l~~l~~~~~~L~~L~l~~c~~i 147 (864)
..|++|++|.+ +|..+++.++..++..||+|++|+++ +|..++ +.++..+..+|++|++|++++ .+
T Consensus 369 ~~~~~L~~L~~---~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l 443 (594)
T 2p1m_B 369 MGCPKLESVLY---FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LL 443 (594)
T ss_dssp HHCTTCCEEEE---EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SC
T ss_pred HhchhHHHHHH---hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cc
Confidence 88999999977 48899999999999899999999999 677899 889999999999999999977 78
Q ss_pred CHHHhc----CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 148 DEAALE----NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 148 ~~~~~~----~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
++.++. .+++|++|++++|. +++.++..+..+|++|+.|+++++..+...+..+...+++|+.|++++|+.
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 888776 48999999999986 899999998888999999999998888888877887789999999999997
No 43
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.69 E-value=3.3e-15 Score=174.38 Aligned_cols=449 Identities=14% Similarity=0.024 Sum_probs=301.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
++.|..++.++++.+|..|..+|.+++..... . ......++.+..+..+++..+|..++.+++.++..-.
T Consensus 89 l~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~---------~-~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 89 LPPLESLATVEETVVRDKAVESLRAISHEHSP---------S-DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH---------H-HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH---------H-HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 57777777888999999999999998754421 1 1223456667777788889999999999999876421
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHh
Q 048757 391 VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANL 470 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L 470 (864)
. . .....++.+..+++++++.++..|+.+|+.++..-... ......++.+..++. +++..++..|+.+|..+
T Consensus 159 ~--~-~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~---d~~~~vr~~a~~~l~~l 230 (588)
T 1b3u_A 159 S--A-VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLAS---DEQDSVRLLAVEACVNI 230 (588)
T ss_dssp H--H-HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHT---CSCHHHHTTHHHHHHHH
T ss_pred H--H-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHH
Confidence 1 0 12234677888889999999999999999997532211 223456788888885 46789999999999988
Q ss_pred cCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHH
Q 048757 471 AADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEA 550 (864)
Q Consensus 471 ~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 550 (864)
+..... .......++.+..++.+ +++.+|..++.+|..++...+ + .......++.++.+++++++++|..|
T Consensus 231 ~~~~~~--~~~~~~~~~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~--~----~~~~~~l~~~l~~~l~d~~~~vr~~a 301 (588)
T 1b3u_A 231 AQLLPQ--EDLEALVMPTLRQAAED-KSWRVRYMVADKFTELQKAVG--P----EITKTDLVPAFQNLMKDCEAEVRAAA 301 (588)
T ss_dssp HHHSCH--HHHHHHTHHHHHHHHTC-SSHHHHHHHHHTHHHHHHHHC--H----HHHHHTHHHHHHHHHTCSSHHHHHHH
T ss_pred HHhCCH--HHHHHHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHhC--c----ccchhHHHHHHHHHhCCCcHHHHHHH
Confidence 754321 11233467777888876 468899999999999986311 1 11234678999999999999999999
Q ss_pred HHHHHHhcCCh--hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCC
Q 048757 551 AGALWNLSFDD--RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAV 628 (864)
Q Consensus 551 ~~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~ 628 (864)
+.+|..++..- +.+....-...++.+..++.+ +++.+|..++.+|+.++..-.. .......++.+..++++++
T Consensus 302 ~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d---~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~~~l~d~~ 376 (588)
T 1b3u_A 302 SHKVKEFCENLSADCRENVIMSQILPCIKELVSD---ANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFLAQLKDEC 376 (588)
T ss_dssp HHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC---SCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHHHHhCCCc
Confidence 99999887642 212112223467888888876 8999999999999988753110 1112347788999999999
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccc------eeeecccccCC
Q 048757 629 VDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMED------IASIGSSLEGT 702 (864)
Q Consensus 629 ~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~------~~~~~~ll~~~ 702 (864)
++|+..++.+|..+....... ......+|.|..++.+++ ..+|..++.++..+...-... +..+...+.|.
T Consensus 377 ~~Vr~~a~~~l~~l~~~~~~~--~~~~~~lp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~ 453 (588)
T 1b3u_A 377 PEVRLNIISNLDCVNEVIGIR--QLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH 453 (588)
T ss_dssp HHHHHHHHTTCHHHHHHSCHH--HHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCS
T ss_pred hHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCC
Confidence 999999999999887522111 112356788888887765 889999999998876522111 11233367788
Q ss_pred CcccchHHHHHHHHHHHHhhcccccchh-hhhHHHHhccC--hhhHHHHhhccchhHHhccccccCcccccccccchhhH
Q 048757 703 SESENLDVIRRMALKHIEDFCAGRIALK-HIEDFVRSFSD--PQAFATALASAVPKSLAQITEGARIPEAAHLRCSGAEI 779 (864)
Q Consensus 703 ~~~v~~~~~~~~al~~l~~~~~g~~~~~-~i~~l~~~~~~--~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~i 779 (864)
+..|+..++ .++..+..........+ .++.++....+ ..++..+. .++..++..... . ......+
T Consensus 454 ~~~Vr~~a~--~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~--~~l~~l~~~~~~-----~---~~~~~~~ 521 (588)
T 1b3u_A 454 VYAIREAAT--SNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTL--FCINVLSEVCGQ-----D---ITTKHML 521 (588)
T ss_dssp SHHHHHHHH--HHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHH--HHHHHHHHHHHH-----H---HHHHHTH
T ss_pred cHHHHHHHH--HHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHH--HHHHHHHHhcCH-----H---HHHHHHH
Confidence 878877776 44444443321111122 23333332222 33333222 333233221111 0 1123467
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 048757 780 GRFVSMLRNPSSILKACAAVALLQFTM 806 (864)
Q Consensus 780 ~~lv~~l~~~~~~~~~~Aa~al~~~~~ 806 (864)
+.|+++++++++.+|..|+++|..+..
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999977753
No 44
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.67 E-value=1e-15 Score=178.82 Aligned_cols=211 Identities=12% Similarity=0.119 Sum_probs=176.4
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH-HHH--hCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA-MII--LQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~-l~~--~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
+..++.+++... ....+..+...|++|++|++++|...+. +.. ..|++|++|++++ .+++.++..+...|++|
T Consensus 269 ~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 269 PRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTC
T ss_pred cccccccCcccc--chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCC
Confidence 345566666553 2334566677899999999999984333 322 4899999999994 47899999999999999
Q ss_pred ceEEeccCC----------CCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccC---CCCCCH
Q 048757 83 EILHFGLDV----------CDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFID---SGGVDE 149 (864)
Q Consensus 83 ~~L~l~~~~----------c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~---c~~i~~ 149 (864)
++|++ +. |..+++.++..+...||+|++|++ +|..+++.++..++.+||+|++|++++ |..+++
T Consensus 345 ~~L~L--~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 345 KRLRI--ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp CEEEE--ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred CEEEe--ecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 99999 74 899999999999999999999999 555699999999999999999999984 667876
Q ss_pred ----HHhc----CCCCcCEEEEeCCCC-CCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 150 ----AALE----NLSSVRYLSIAGTRN-LNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 150 ----~~~~----~~~~L~~L~l~~c~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
.++. +|++|++|++++|.. +++.++..+...+++|+.|+++++..+...+..++..+++|+.|++++|+ +
T Consensus 422 ~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l 500 (592)
T 3ogk_B 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-F 500 (592)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-C
T ss_pred chHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-C
Confidence 2343 899999999998874 89999999998999999999999888888888888899999999999999 5
Q ss_pred cccc
Q 048757 221 EAEA 224 (864)
Q Consensus 221 ~~~~ 224 (864)
++..
T Consensus 501 ~~~~ 504 (592)
T 3ogk_B 501 SERA 504 (592)
T ss_dssp BHHH
T ss_pred cHHH
Confidence 5543
No 45
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.65 E-value=1e-14 Score=170.28 Aligned_cols=450 Identities=11% Similarity=0.019 Sum_probs=300.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
++.+.++.++++..+|..|+.+++.++....+ . .....++.+..+++++++.+|..++.+|+.++..-.
T Consensus 128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~------~-----~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~ 196 (588)
T 1b3u_A 128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS------A-----VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 196 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH------H-----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH------H-----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56677777888899999999999998744321 1 123467788888999999999999999999886422
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHh
Q 048757 391 VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANL 470 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L 470 (864)
.. ......++.+..+++++++.++..|+.+|..++..-.. .......++.+.+++. +.+..+|..++.+|+.+
T Consensus 197 ~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~~~~~l~~~~~---d~~~~vR~~a~~~l~~l 269 (588)
T 1b3u_A 197 LD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--EDLEALVMPTLRQAAE---DKSWRVRYMVADKFTEL 269 (588)
T ss_dssp HH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--HHHHHHTHHHHHHHHT---CSSHHHHHHHHHTHHHH
T ss_pred HH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 11 22345688888999999999999999999998753211 1122336777777775 46789999999999998
Q ss_pred cCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHH
Q 048757 471 AADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEA 550 (864)
Q Consensus 471 ~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 550 (864)
+..... .......++.+..++++ +++++|..++.+|..++..-. +..+....-...++.+..++.++++.+|..+
T Consensus 270 ~~~~~~--~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~--~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a 344 (588)
T 1b3u_A 270 QKAVGP--EITKTDLVPAFQNLMKD-CEAEVRAAASHKVKEFCENLS--ADCRENVIMSQILPCIKELVSDANQHVKSAL 344 (588)
T ss_dssp HHHHCH--HHHHHTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHTSC--TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHH
T ss_pred HHHhCc--ccchhHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHhC--hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 753211 12334568889999987 468999999999999987421 1111112234678888999999999999999
Q ss_pred HHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHH
Q 048757 551 AGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVD 630 (864)
Q Consensus 551 ~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~ 630 (864)
+.+|..++..-... . .....++.+..++.+ +++++|..++.++..+...-.. .......+|.|..++++++..
T Consensus 345 ~~~l~~l~~~~~~~-~-~~~~l~p~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~lp~l~~~~~d~~~~ 417 (588)
T 1b3u_A 345 ASVIMGLSPILGKD-N-TIEHLLPLFLAQLKD---ECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAEDAKWR 417 (588)
T ss_dssp HTTGGGGHHHHCHH-H-HHHHTHHHHHHHHTC---SCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHhhHh-H-HHHHHHHHHHHHhCC---CchHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHhcCCCch
Confidence 99999886532111 1 122367888888886 7899999999999887643111 011234678888999999999
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccce--e----eecccccCCCc
Q 048757 631 VHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDI--A----SIGSSLEGTSE 704 (864)
Q Consensus 631 v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~--~----~~~~ll~~~~~ 704 (864)
++..++.++..++..-... ......++.+..++.+++ +.+|..|+.+++.+...-.... . .+..+..+.+.
T Consensus 418 vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~ 494 (588)
T 1b3u_A 418 VRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY 494 (588)
T ss_dssp HHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCH
T ss_pred HHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCH
Confidence 9999999999987521110 112245788889888875 8899999999998875422111 1 22235566666
Q ss_pred ccchHHHHHHHHHHHHhhcc-cccchhhhhHHHHhc--cChhhHHHHhhccchhHHhccccccCcccccccccchhhHHH
Q 048757 705 SENLDVIRRMALKHIEDFCA-GRIALKHIEDFVRSF--SDPQAFATALASAVPKSLAQITEGARIPEAAHLRCSGAEIGR 781 (864)
Q Consensus 705 ~v~~~~~~~~al~~l~~~~~-g~~~~~~i~~l~~~~--~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 781 (864)
.++..++ .++..++.... .......++.+++.. .++.++..+. . +++.+.... |.-......++.
T Consensus 495 ~~R~~a~--~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~--~---~l~~l~~~~-----~~~~~~~~~~p~ 562 (588)
T 1b3u_A 495 LHRMTTL--FCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVA--K---SLQKIGPIL-----DNSTLQSEVKPI 562 (588)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHH--H---HHHHHGGGS-----CHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHH--H---HHHHHHHHh-----chhhhHHHHHHH
Confidence 6666665 44444443221 111122344444433 3344443332 2 444433211 110112346678
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhc
Q 048757 782 FVSMLRNPSSILKACAAVALLQFT 805 (864)
Q Consensus 782 lv~~l~~~~~~~~~~Aa~al~~~~ 805 (864)
|.+++.++++++|..|..|+..+.
T Consensus 563 l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 563 LEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCchhHHHHHHHHHHHhh
Confidence 888899999999999999997664
No 46
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=6.4e-15 Score=172.16 Aligned_cols=206 Identities=17% Similarity=0.200 Sum_probs=143.3
Q ss_pred CCCCeecCCCCC--CCHHHHHHHHhcCCCCcEEEecCCCCchHHHH----------------------------------
Q 048757 7 CLWSSLDLRPYK--FDTSAAESLSSRCTNLQALWFRGALSADAMII---------------------------------- 50 (864)
Q Consensus 7 ~lw~~ldL~~~~--~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~---------------------------------- 50 (864)
+.++.|+|+.+. ++.+.+..+..+|++|++|++++|.....+..
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 467788888774 56677888878888899998888733221100
Q ss_pred ----------------------hCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCc
Q 048757 51 ----------------------LQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCP 108 (864)
Q Consensus 51 ----------------------~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~ 108 (864)
..+++|++|++++|. +++.++..+...|++|++|++ ++| +++.++..++..|+
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l--~~~--~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWV--LDY--IEDAGLEVLASTCK 338 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEE--EGG--GHHHHHHHHHHHCT
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeC--cCc--cCHHHHHHHHHhCC
Confidence 035678888888887 888887777777888888888 555 67777777777788
Q ss_pred CcCeeee--------cccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc----CCCCcCEEEEe-----CCCCCC-
Q 048757 109 KLRRLWL--------SGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE----NLSSVRYLSIA-----GTRNLN- 170 (864)
Q Consensus 109 ~L~~L~l--------~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~----~~~~L~~L~l~-----~c~~~~- 170 (864)
+|++|++ .+|..+++.++..+..+||+|++|.+ +|..+++.++. +|++|++|+++ +|..++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 8888887 34456777777777777777777744 45667776654 57777777777 667777
Q ss_pred ---HHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 171 ---WSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 171 ---~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
+.++..+...|++|+.|++++ ..+...+..+...+++|+.|++++|..
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i 468 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD 468 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC
Confidence 667766667777777777766 444444444433456777777777663
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.63 E-value=1.7e-14 Score=151.02 Aligned_cols=261 Identities=12% Similarity=0.009 Sum_probs=201.8
Q ss_pred HHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCc
Q 048757 353 AILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDH 432 (864)
Q Consensus 353 ~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~ 432 (864)
...+.+.++.|+..|.++++.++..|+++|+++. ..+.++.|+++++++++.++..|+.+|+.+...++.
T Consensus 18 ~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 3556789999999999999999999999999965 345688999999999999999999999999754332
Q ss_pred HHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHH
Q 048757 433 KGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANL 512 (864)
Q Consensus 433 ~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L 512 (864)
... .++.|.+.+. .+.+..++..++.+|+++...... .....++.|+.++.+ +++.++..++.+|.++
T Consensus 88 ~~~-----l~~~L~~~~~--~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d-~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 88 EDN-----VFNILNNMAL--NDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFD-KSTNVRRATAFAISVI 155 (280)
T ss_dssp HHH-----HHHHHHHHHH--HCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTC-SCHHHHHHHHHHHHTC
T ss_pred chH-----HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhC-CCHHHHHHHHHHHHhc
Confidence 111 2233332222 257889999999999998643211 122457888888887 4689999999999887
Q ss_pred hhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHH
Q 048757 513 VAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQE 592 (864)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~ 592 (864)
.. .++++.|+.++.++++.+|..|+.+|..+....+ .+++.|+.++.+ +++.+|.
T Consensus 156 ~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d---~~~~vR~ 210 (280)
T 1oyz_A 156 ND--------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQD---KNEEVRI 210 (280)
T ss_dssp -----------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTC---SCHHHHH
T ss_pred CC--------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcC---CCHHHHH
Confidence 64 2478999999999999999999999999853321 356788888886 8899999
Q ss_pred HHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHH
Q 048757 593 RAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKM 672 (864)
Q Consensus 593 ~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~ 672 (864)
.|+.+|+.+ ....+++.|+.++++++ ++..|+.+|..+.. ..+++.|.+++.+.+++.
T Consensus 211 ~A~~aL~~~----------~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~----------~~~~~~L~~~l~~~~~~~ 268 (280)
T 1oyz_A 211 EAIIGLSYR----------KDKRVLSVLCDELKKNT--VYDDIIEAAGELGD----------KTLLPVLDTMLYKFDDNE 268 (280)
T ss_dssp HHHHHHHHT----------TCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC----------GGGHHHHHHHHTTSSCCH
T ss_pred HHHHHHHHh----------CCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc----------hhhhHHHHHHHhcCCCcH
Confidence 999999964 45678999999998744 89999999999973 368999999998765566
Q ss_pred HHHHHHHHHH
Q 048757 673 ARFMAALALA 682 (864)
Q Consensus 673 ~r~~aa~aL~ 682 (864)
+...+..+|.
T Consensus 269 ~~~~~~~~l~ 278 (280)
T 1oyz_A 269 IITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 7766766653
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.63 E-value=9.3e-13 Score=145.85 Aligned_cols=362 Identities=14% Similarity=0.063 Sum_probs=272.7
Q ss_pred hcHHHHHHHHccC-CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 048757 309 QGATLLLSLMESS-QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIANL 385 (864)
Q Consensus 309 ~gv~~L~~lL~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~L 385 (864)
+.|+.|+.-+++. -.+-|+.|+..|..++..-. .-+..++++.|+..|+. .|.++...++.+|.++
T Consensus 21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-----------~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l 89 (651)
T 3grl_A 21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-----------LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNI 89 (651)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-----------THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-----------HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 4488999988765 57889999999999975332 24458899999999976 5788888999999887
Q ss_pred hCC-ch-----------------hHHHH-HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC--CcHHHHH-hhCcHH
Q 048757 386 SVD-SK-----------------VAKAV-SENGGIDILADLARSTNRLVAEEVVGGLWNLSVGE--DHKGAIA-RAGGIK 443 (864)
Q Consensus 386 ~~~-~~-----------------~~~~i-~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--~~~~~i~-~~g~i~ 443 (864)
... ++ ....+ .+.++|+.|+.+|++.+..++.+++..|..|+... .+++.|. ..+|++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~ 169 (651)
T 3grl_A 90 ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVS 169 (651)
T ss_dssp HCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHH
T ss_pred hCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHH
Confidence 652 21 12223 35667999999999999999999999999998633 3788888 459999
Q ss_pred HHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCc---hhHHHHHHHHHHHHhhcCCCC
Q 048757 444 ALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMF---EGVQEQAARALANLVAHGDSN 519 (864)
Q Consensus 444 ~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~---~~v~~~a~~aL~~L~~~~~~~ 519 (864)
.|+.+|. +..+.+|..+...|.+|+.++. .++.+.-+|+++.|+.+++.+.. ..+...++..|.+|.+. |
T Consensus 170 ~Lv~lL~---d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~---N 243 (651)
T 3grl_A 170 RLMDLLA---DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKN---N 243 (651)
T ss_dssp HHHGGGG---CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHh---CchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhc---C
Confidence 9999997 4678999999999999999987 55566667999999999987531 25677899999999986 7
Q ss_pred cccchhhhccChHHHHHHHhcCCCH------HHHHH---HHHHHHHhcCC-------hhhHHHHHHCCChHHHHHHHHhc
Q 048757 520 SNNAAVGLETGALEALVQLTFSKHE------GVRQE---AAGALWNLSFD-------DRNREAIAAAGGVEALVALVRSC 583 (864)
Q Consensus 520 ~~~~~~~~~~~~i~~L~~lL~~~~~------~v~~~---a~~~L~~Ls~~-------~~~~~~i~~~~~i~~Lv~lL~~~ 583 (864)
+.++..+.+.+.++.|..+|+.+.+ ....+ +..++.-+... ..++..+.+.|+++.|++++..
T Consensus 244 ~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~- 322 (651)
T 3grl_A 244 NSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA- 322 (651)
T ss_dssp HHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc-
Confidence 8899999999999999999975432 22233 55555555443 2357888999999999999986
Q ss_pred CCCCHHHHHHHHHHHHHhccC-chhhHHhhhcC-----CHHHHHHH----Hcc-CCHHHHHHHHHHHHHhcC-CcccHHH
Q 048757 584 SSSSQGLQERAAGALWGLSLS-EANSIAIGREG-----GVAPLIAL----ARS-AVVDVHETAAGALWNLAF-NPGNALC 651 (864)
Q Consensus 584 ~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~-----~i~~Lv~l----L~~-~~~~v~~~a~~aL~~L~~-~~~~~~~ 651 (864)
+.-+..++..|..+++.+.++ +.++..|.+.. ..+.++.+ +.+ ...++|..|+.++..+.. +++.+..
T Consensus 323 ~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~ 402 (651)
T 3grl_A 323 TGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGE 402 (651)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 233788999999999999876 67777777543 23444444 444 347889999999999877 5556666
Q ss_pred HHhC------C----c---HHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 652 IVEG------G----G---VQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 652 i~~~------g----~---v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
++.. + . -..|..-+-+.+ +..-..|+.+|.++..+++
T Consensus 403 i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d-~~~~wfAavil~hll~~n~ 452 (651)
T 3grl_A 403 IVSTLLPSTIDATGNTVSAGQLLCGGLFSTD-SLSNWCAAVALAHALQENA 452 (651)
T ss_dssp HHHTTSSCCCCCTTSSSCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCCcccccCCCCCCcchhhhhhhccCc-hHHHHHHHHHHHHHHcCCH
Confidence 6542 1 1 123455555555 5444558888999988886
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.59 E-value=5.8e-14 Score=146.89 Aligned_cols=255 Identities=14% Similarity=0.068 Sum_probs=199.5
Q ss_pred HhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 048757 307 LRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLS 386 (864)
Q Consensus 307 ~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~ 386 (864)
....++.|++.|+++++.+|..|+.+|+.+. ..+.++.|+.+|+++++.++..|+.+|+.+.
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~------------------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRG------------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSC
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccC------------------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 3445899999999999999999999999864 1346788999999999999999999999987
Q ss_pred CCchhHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 387 VDSKVAKAVSENGGIDILAD-LARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 387 ~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
..+.... ..++.|.+ +++++++.++..++.+|+++.. ++.. ....++.|+..+. ++++.++..|+
T Consensus 83 ~~~~~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~---d~~~~vR~~a~ 149 (280)
T 1oyz_A 83 ICKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAF---DKSTNVRRATA 149 (280)
T ss_dssp CCTTTHH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTT---CSCHHHHHHHH
T ss_pred cccccch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhh---CCCHHHHHHHH
Confidence 5432211 12333442 4578899999999999999863 2111 2246788888886 57899999999
Q ss_pred HHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCH
Q 048757 465 GALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHE 544 (864)
Q Consensus 465 ~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 544 (864)
.+|+++. ..+.++.|+.++.+ +++.++..++++|..+... ...+++.|+.+++++++
T Consensus 150 ~aL~~~~----------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~------------~~~~~~~L~~~l~d~~~ 206 (280)
T 1oyz_A 150 FAISVIN----------DKATIPLLINLLKD-PNGDVRNWAAFAININKYD------------NSDIRDCFVEMLQDKNE 206 (280)
T ss_dssp HHHHTC-------------CCHHHHHHHHTC-SSHHHHHHHHHHHHHHTCC------------CHHHHHHHHHHTTCSCH
T ss_pred HHHHhcC----------CHHHHHHHHHHHcC-CCHHHHHHHHHHHHhhccC------------cHHHHHHHHHHhcCCCH
Confidence 9998874 24589999999988 4689999999999998632 13578999999999999
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHH
Q 048757 545 GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALA 624 (864)
Q Consensus 545 ~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL 624 (864)
.+|..|+.+|..+. ...+++.|+..+.+ ++ ++..|+.+|+.+ .....++.|.+++
T Consensus 207 ~vR~~A~~aL~~~~----------~~~~~~~L~~~l~d---~~--vr~~a~~aL~~i----------~~~~~~~~L~~~l 261 (280)
T 1oyz_A 207 EVRIEAIIGLSYRK----------DKRVLSVLCDELKK---NT--VYDDIIEAAGEL----------GDKTLLPVLDTML 261 (280)
T ss_dssp HHHHHHHHHHHHTT----------CGGGHHHHHHHHTS---SS--CCHHHHHHHHHH----------CCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----------CHhhHHHHHHHhcC---cc--HHHHHHHHHHhc----------CchhhhHHHHHHH
Confidence 99999999999985 23578999999975 33 899999999964 4456889999999
Q ss_pred cc-CCHHHHHHHHHHHH
Q 048757 625 RS-AVVDVHETAAGALW 640 (864)
Q Consensus 625 ~~-~~~~v~~~a~~aL~ 640 (864)
++ .+++++..+..+|.
T Consensus 262 ~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 262 YKFDDNEIITSAIDKLK 278 (280)
T ss_dssp TTSSCCHHHHHHHHHHT
T ss_pred hcCCCcHHHHHHHHHhh
Confidence 65 56777777777664
No 50
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.56 E-value=1.3e-13 Score=168.01 Aligned_cols=356 Identities=14% Similarity=0.004 Sum_probs=236.8
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
++.|++.++++++.++..+..+|+.++.........+ .. .-.-...++.+++.++++++.+|..|+++|..+.....
T Consensus 130 l~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~--~~-~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~ 206 (852)
T 4fdd_A 130 LPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD--VL-DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT 206 (852)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHC--SS-SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchh--hh-cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence 6889999999999999999999999875432210000 00 00012357778888889999999999999998765322
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-Cc-HHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 391 VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGE-DH-KGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~-~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
....-.-...++.+.+++.++++.++..++.+|..++... +. ...+ .+.++.+...+. +.++.++..|+..+.
T Consensus 207 ~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~---~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 207 QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQ---DQDENVALEACEFWL 281 (852)
T ss_dssp HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHcc---CCcHHHHHHHHHHHH
Confidence 1110001235778888888999999999999999997632 11 1111 135666777775 467899999999999
Q ss_pred HhcCCCcchHHHH--hcCcHHHHHHHH----------Hcc-----------CchhHHHHHHHHHHHHhhcCCCCcccchh
Q 048757 469 NLAADDKCSLEVA--RAGGVHALVMLA----------RSF-----------MFEGVQEQAARALANLVAHGDSNSNNAAV 525 (864)
Q Consensus 469 ~L~~~~~~~~~i~--~~~~i~~Lv~ll----------~~~-----------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~ 525 (864)
.++.....+..+. -...++.++..+ +.. ....++..++.+|..++... + ..
T Consensus 282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~---~---~~ 355 (852)
T 4fdd_A 282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY---R---DE 355 (852)
T ss_dssp HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH---G---GG
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc---c---HH
Confidence 9987654333221 112355555555 121 12346888999999998741 1 11
Q ss_pred hhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-
Q 048757 526 GLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS- 604 (864)
Q Consensus 526 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~- 604 (864)
+ -...++.+...+.+++..+|..|+.+|.+++........-.-.+.++.++..+.+ +++.+|..|++++++++..
T Consensus 356 ~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d---~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 356 L-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD---KKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp G-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHTHHHH
T ss_pred H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHh
Confidence 1 1246778888888999999999999999998864321111112467888888876 8999999999999998863
Q ss_pred chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHh
Q 048757 605 EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYI 684 (864)
Q Consensus 605 ~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l 684 (864)
........-.+.++.|++.+++.++.++..|+++|.+++........-.-.+.++.|+.++...+ ......+..+++.+
T Consensus 432 ~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~-~~~~~~~~~ai~~l 510 (852)
T 4fdd_A 432 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQ-HKNLLILYDAIGTL 510 (852)
T ss_dssp HHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHH
Confidence 11111112235678888999889999999999999999863221110012356778888887665 33444455566655
Q ss_pred h
Q 048757 685 V 685 (864)
Q Consensus 685 ~ 685 (864)
+
T Consensus 511 ~ 511 (852)
T 4fdd_A 511 A 511 (852)
T ss_dssp H
T ss_pred H
Confidence 5
No 51
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.4e-13 Score=151.26 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=137.5
Q ss_pred CCCCeecCCCCCCCHHHHHHHH---hcCCCCcEEEecCCCC--ch-----H---HHH--hCCcccceeeeecCCCCCHHH
Q 048757 7 CLWSSLDLRPYKFDTSAAESLS---SRCTNLQALWFRGALS--AD-----A---MII--LQARRLREINVEFCRELTDAI 71 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~---~~~~~L~~L~l~~~~~--~~-----~---l~~--~~~~~L~~L~l~~c~~l~d~~ 71 (864)
+.++.|+|+++.++......+. ..+++|++|+|++|.. +. . +.. ..+++|++|++++|. +++.+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~ 110 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTA 110 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTT
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHH
Confidence 4578888888888776655543 3678888888888732 11 1 111 277888888888876 66643
Q ss_pred HHH---HHhCCCCcceEEeccCCCCCCCHHHHHHHHhc---C---------cCcCeeeecccCCCcHHHHHHH---HhcC
Q 048757 72 FSA---IVARHEMLEILHFGLDVCDRISSDAIKTVAYC---C---------PKLRRLWLSGVREVNGDAINAL---AKQC 133 (864)
Q Consensus 72 l~~---l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~---~---------~~L~~L~l~~~~~l~~~~l~~l---~~~~ 133 (864)
... ....+++|++|+| ++| .+++.+...++.. + ++|++|++++|. +++.++..+ ...+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L--~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYL--HNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSH 186 (386)
T ss_dssp HHHHHHHHHHCTTCCEEEC--CSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCCEEEC--cCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhC
Confidence 332 3356788888888 655 4666665555432 2 788888888887 766655543 3367
Q ss_pred CCccEEeccCCCCCCHHH--------hcCCCCcCEEEEeCCCCCCHHHHHHH---HhcCCCCcEEecCCCCCCHH---HH
Q 048757 134 RQLVEVGFIDSGGVDEAA--------LENLSSVRYLSIAGTRNLNWSSAAIA---WSKLTSLVGLDTSRTNINLS---SV 199 (864)
Q Consensus 134 ~~L~~L~l~~c~~i~~~~--------~~~~~~L~~L~l~~c~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~~---~l 199 (864)
++|++|++++| .+++.+ +.++++|++|++++|. +++.+...+ ...+++|+.|+++++..+.. .+
T Consensus 187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence 88888888887 466543 2277888888888774 665443333 35678888888888555433 34
Q ss_pred HHHhcC--CCCCcEEEccCCCCccc
Q 048757 200 TRLLSS--SRNLKVLIALNCPVFEA 222 (864)
Q Consensus 200 ~~~~~~--~~~L~~L~~~~c~~~~~ 222 (864)
...+.. +++|+.|++++|..-..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~ 289 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELD 289 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred HHHHhhccCCCeEEEECcCCcCCHH
Confidence 455433 67888888888875553
No 52
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.56 E-value=3.1e-12 Score=141.69 Aligned_cols=363 Identities=15% Similarity=0.068 Sum_probs=259.0
Q ss_pred HHHHHhhCCchhHHHHHhhcHHHHHHHHcc--CCHHHHHHHHHHHHHhcccCCcccc--------cc--hHhH-HHHHHh
Q 048757 291 LMRISKKNPKEFDDFWLRQGATLLLSLMES--SQQEVQERAAYAVATFVVIDDQNAM--------VD--CQRA-EAILRH 357 (864)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~--~~~~v~~~a~~~L~~L~~~~~~~~~--------~~--~~~~-~~i~~~ 357 (864)
++.+-+-.+ +.+.-+-.+|++.|+..|+. .|.++...+..+|.++...+++... .+ .... ..+.+.
T Consensus 43 v~~Lk~~sk-~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~ 121 (651)
T 3grl_A 43 VRALKSLSK-KYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQ 121 (651)
T ss_dssp HHHHHHTTT-TTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHST
T ss_pred HHHHHHHHH-HhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCC
Confidence 434333333 33444667889999999975 5788889999999887654443110 00 0111 234567
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-Cch-hHHHHHhc-CcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcH
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSK-VAKAVSEN-GGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHK 433 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~-~~~~i~~~-g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~ 433 (864)
+.++.|+.+|++.+..++..++.+|..|+. .++ +++.|... +|++.|+.+|++..+.+|..++..|.+|+.+ ++.|
T Consensus 122 ~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQ 201 (651)
T 3grl_A 122 ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ 201 (651)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHH
Confidence 889999999999999999999999999987 454 78888855 8999999999999999999999999999885 4667
Q ss_pred HHHHhhCcHHHHHHHHcccCC-CCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCch-----hHHHH--
Q 048757 434 GAIARAGGIKALVDLIFKWSS-WNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFE-----GVQEQ-- 504 (864)
Q Consensus 434 ~~i~~~g~i~~L~~lL~~~~~-~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~-----~v~~~-- 504 (864)
..++-+|+++.|+++++.-.. ....+...++.++.||.+.+. ++..+.+.++++.|..+++..+.. ....+
T Consensus 202 klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~ 281 (651)
T 3grl_A 202 KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLH 281 (651)
T ss_dssp HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHH
Confidence 777788999999999975211 123677899999999999876 888999999999999998753211 12223
Q ss_pred -HHHHHHHHhhcCCC---CcccchhhhccChHHHHHHHhcCC--CHHHHHHHHHHHHHhcCC-hhhHHHHHHCC-----C
Q 048757 505 -AARALANLVAHGDS---NSNNAAVGLETGALEALVQLTFSK--HEGVRQEAAGALWNLSFD-DRNREAIAAAG-----G 572 (864)
Q Consensus 505 -a~~aL~~L~~~~~~---~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~-----~ 572 (864)
+..+++-|...+.. ...++..+.+.|+++.|++++... ...++..|..+++.+..+ +.++..+.... .
T Consensus 282 ~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~ 361 (651)
T 3grl_A 282 LMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPP 361 (651)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSC
T ss_pred HHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCC
Confidence 55666666654321 345688899999999999998765 678999999999988776 56677777643 2
Q ss_pred hHHHHHHHHhc--CCCCHHHHHHHHHHHHHhccC-chhhHHhhhc------C----CH---HHHHHHHccCCHHHHHHHH
Q 048757 573 VEALVALVRSC--SSSSQGLQERAAGALWGLSLS-EANSIAIGRE------G----GV---APLIALARSAVVDVHETAA 636 (864)
Q Consensus 573 i~~Lv~lL~~~--~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~------~----~i---~~Lv~lL~~~~~~v~~~a~ 636 (864)
.+.++.+|.+. +.....+|.+|+.++.....+ +..+..+... + .+ ..|..-+-+.++.-..-|+
T Consensus 362 ~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAa 441 (651)
T 3grl_A 362 RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAA 441 (651)
T ss_dssp EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHH
T ss_pred cChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHH
Confidence 34455543221 135789999999999988765 4444444322 1 11 1344555566776667788
Q ss_pred HHHHHhcCC-cccHHHHHh
Q 048757 637 GALWNLAFN-PGNALCIVE 654 (864)
Q Consensus 637 ~aL~~L~~~-~~~~~~i~~ 654 (864)
.+|.++..+ +..++.+.+
T Consensus 442 vil~hll~~n~~~K~~~l~ 460 (651)
T 3grl_A 442 VALAHALQENATQKEQLLR 460 (651)
T ss_dssp HHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHh
Confidence 889888874 445554443
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.54 E-value=5.6e-13 Score=154.55 Aligned_cols=330 Identities=15% Similarity=0.073 Sum_probs=237.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS- 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~- 389 (864)
++.+.+++.++++.+|..|+.++..+...+.+. +.+.+.++.+..+|.++++.++..|+.+|.+++.+.
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~----------~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM----------VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC----------HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh----------cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 577889999999999999999999998755432 334578899999999999999999999999998743
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALAN 469 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~ 469 (864)
+....-...+.+..|++.+.+.++..+...+++|.+++..++. . ....++.+..++. +.+..|+..|+.++.+
T Consensus 193 ~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~~~~l~~l~~~l~---~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 193 NSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--AQSICERVTPRLS---HANSAVVLSAVKVLMK 265 (591)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--HHHHHHHHTTCSC---SSTTHHHHHHHHHHHH
T ss_pred CccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--HHHHHHHHHHHHc---CCChHHHHHHHHHHHH
Confidence 2210001123467788888888999999999999888743221 1 1234566666664 4677999999999999
Q ss_pred hcCC----CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHH
Q 048757 470 LAAD----DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEG 545 (864)
Q Consensus 470 L~~~----~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 545 (864)
+... ++....+ -....+.|+.++. +++++|..++.+|..+.... +.. +. . .+..+.. +.+.+..
T Consensus 266 l~~~~~~~~~~~~~~-~~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~~---p~~---~~-~-~~~~~~~-~~~d~~~ 333 (591)
T 2vgl_B 266 FLELLPKDSDYYNML-LKKLAPPLVTLLS--GEPEVQYVALRNINLIVQKR---PEI---LK-Q-EIKVFFV-KYNDPIY 333 (591)
T ss_dssp SCCSCCBTTBSHHHH-HHHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHHC---CST---TT-T-CTTTTSC-CTTSCHH
T ss_pred HhhccCCCHHHHHHH-HHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHhC---hHH---HH-H-HHHhhee-ccCChHH
Confidence 8742 2322222 2345677776654 46899999999999998742 111 11 0 1111222 2244588
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHH
Q 048757 546 VRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALA 624 (864)
Q Consensus 546 v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL 624 (864)
+|..|+.++..++... +... .++.|...+.+ .+++++..++.+++.++.. +... ...++.|++++
T Consensus 334 Ir~~al~~L~~l~~~~-nv~~-----iv~~L~~~l~~---~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll 399 (591)
T 2vgl_B 334 VKLEKLDIMIRLASQA-NIAQ-----VLAELKEYATE---VDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLI 399 (591)
T ss_dssp HHHHHHHHHHHTCCSS-THHH-----HHHHHHHHTTS---SCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCChh-hHHH-----HHHHHHHHHhc---CCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHH
Confidence 9999999999997543 2221 34556666665 7999999999999999876 3222 23578999999
Q ss_pred ccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 625 RSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 625 ~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
++..+.++..++.++.++.. +++. .+.+++.|++.+.+...+.++..++|+++..+..-
T Consensus 400 ~~~~~~v~~e~i~~l~~ii~~~p~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 400 QTKVNYVVQEAIVVIRDIFRKYPNK-----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHSCSS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred cccchHHHHHHHHHHHHHHHHCcch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 99999999999999999865 4443 35788999999987666889999999999775543
No 54
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.53 E-value=8.4e-14 Score=169.68 Aligned_cols=352 Identities=14% Similarity=-0.010 Sum_probs=241.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc-h
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS-K 390 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~ 390 (864)
+.+++.|.++++.+|..++.+++.++..+... .+ .+.++.|++.+.++++.++..++.+|+.++.+. +
T Consensus 93 ~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~------~w-----p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 93 SECLNNIGDSSPLIRATVGILITTIASKGELQ------NW-----PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT------TC-----TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc------cc-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 56777788889999999999999998655211 11 467899999999999999999999999988732 1
Q ss_pred hHHH-HH---hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHH
Q 048757 391 VAKA-VS---ENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGA 466 (864)
Q Consensus 391 ~~~~-i~---~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~ 466 (864)
.... .. -...++.+++++++.++.++..|+.+|.++.........-.-...++.+.+++. ++++.++..++.+
T Consensus 162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~---d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAG---DEEPEVRKNVCRA 238 (852)
T ss_dssp HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHT---CCCHHHHHHHHHH
T ss_pred HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC---CCCHHHHHHHHHH
Confidence 1100 00 122466777778889999999999999988754321110011246677777775 5788999999999
Q ss_pred HHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhh--hccChHHHHHHHh-----
Q 048757 467 LANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVG--LETGALEALVQLT----- 539 (864)
Q Consensus 467 L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~--~~~~~i~~L~~lL----- 539 (864)
|..++........-.-.+.++.++..+.+ .+++++..|++++..++... ..+..+ .-...++.++..+
T Consensus 239 L~~l~~~~~~~~~~~l~~l~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~----~~~~~~~~~~~~l~p~ll~~l~~~e~ 313 (852)
T 4fdd_A 239 LVMLLEVRMDRLLPHMHNIVEYMLQRTQD-QDENVALEACEFWLTLAEQP----ICKDVLVRHLPKLIPVLVNGMKYSDI 313 (852)
T ss_dssp HHHHHHHCHHHHGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTST----THHHHHTTTHHHHHHHHHHHTSCCHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHccC-CcHHHHHHHHHHHHHHhcch----hHHHHHHHHHHHHHHHHHHHcCCcHh
Confidence 99998754311000112357777788777 46889999999999998631 122211 1124566666666
Q ss_pred ------cC-----------CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Q 048757 540 ------FS-----------KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLS 602 (864)
Q Consensus 540 ------~~-----------~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~ 602 (864)
.+ .+..+|..|+.+|..++..... .+.. ..++.+.+.+.+ +++.+|..|+.+|++++
T Consensus 314 d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~~-~l~~~l~~~l~~---~~~~~R~aa~~alg~i~ 387 (852)
T 4fdd_A 314 DIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELLP-HILPLLKELLFH---HEWVVKESGILVLGAIA 387 (852)
T ss_dssp HHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHHTC---SSHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHHH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHH
Confidence 22 1223688899999888754221 1111 245666666765 78999999999999999
Q ss_pred cCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc-cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHH
Q 048757 603 LSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG-NALCIVEGGGVQALIHLCSSSLSKMARFMAALAL 681 (864)
Q Consensus 603 ~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL 681 (864)
........-.-...++.++.+++++++.|+..|+++|++++.... ......-.+.++.|++.+.+++ +.+|..|+++|
T Consensus 388 ~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~-~~vr~~a~~aL 466 (852)
T 4fdd_A 388 EGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN-KRVQEAACSAF 466 (852)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 764322111235678999999999999999999999999986211 0000111256788888888775 88999999999
Q ss_pred HHhhcCCc
Q 048757 682 AYIVDGRM 689 (864)
Q Consensus 682 ~~l~~~~~ 689 (864)
.++..+..
T Consensus 467 ~~l~~~~~ 474 (852)
T 4fdd_A 467 ATLEEEAC 474 (852)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHhh
Confidence 99876543
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=7.2e-14 Score=157.70 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=165.7
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH----HHH--hCCcccceeeeecCCCCCHHHHHHHHhCC
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA----MII--LQARRLREINVEFCRELTDAIFSAIVARH 79 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~----l~~--~~~~~L~~L~l~~c~~l~d~~l~~l~~~~ 79 (864)
|+.++.|||+++.+.......+...+++|++|++++|...+. +.. ..+++|++|+++++. +++.++..+...+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence 455788999999998888888888999999999999975432 222 278999999999987 9999998888877
Q ss_pred C----CcceEEeccCCCCCCCHHHHHH---HHhcCcCcCeeeecccCCCcHHHHHHHHhc----CCCccEEeccCCCCCC
Q 048757 80 E----MLEILHFGLDVCDRISSDAIKT---VAYCCPKLRRLWLSGVREVNGDAINALAKQ----CRQLVEVGFIDSGGVD 148 (864)
Q Consensus 80 ~----~L~~L~l~~~~c~~i~~~~l~~---l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~----~~~L~~L~l~~c~~i~ 148 (864)
+ +|++|++ ++| .+++.++.. ....+++|++|++++|. +++.++..+... .++|++|++++|. ++
T Consensus 81 ~~~~~~L~~L~L--~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~ 155 (461)
T 1z7x_W 81 QTPSCKIQKLSL--QNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LS 155 (461)
T ss_dssp CSTTCCCCEEEC--TTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CB
T ss_pred hhCCCceeEEEc--cCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CC
Confidence 7 7999999 767 588755444 34678999999999998 998888877664 4579999999984 66
Q ss_pred HHHh-------cCCCCcCEEEEeCCCCCCHHHHHHHHh----cCCCCcEEecCCCCC---CHHHHHHHhcCCCCCcEEEc
Q 048757 149 EAAL-------ENLSSVRYLSIAGTRNLNWSSAAIAWS----KLTSLVGLDTSRTNI---NLSSVTRLLSSSRNLKVLIA 214 (864)
Q Consensus 149 ~~~~-------~~~~~L~~L~l~~c~~~~~~~l~~l~~----~~~~L~~L~l~~~~~---~~~~l~~~~~~~~~L~~L~~ 214 (864)
+.+. ..+++|++|++++|. +++.+...+.. ..++|+.|+++++.. +...+...+..+++|+.|++
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 234 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEec
Confidence 5432 278999999999986 88877666654 466999999999444 44456777777899999999
Q ss_pred cCCCCcc
Q 048757 215 LNCPVFE 221 (864)
Q Consensus 215 ~~c~~~~ 221 (864)
++|..-+
T Consensus 235 s~n~l~~ 241 (461)
T 1z7x_W 235 GSNKLGD 241 (461)
T ss_dssp CSSBCHH
T ss_pred cCCcCCh
Confidence 9996433
No 56
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.52 E-value=8.7e-15 Score=137.32 Aligned_cols=94 Identities=16% Similarity=0.203 Sum_probs=64.8
Q ss_pred cccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhc---CcCcCeeeecccCCCcHHHHHHHH
Q 048757 54 RRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYC---CPKLRRLWLSGVREVNGDAINALA 130 (864)
Q Consensus 54 ~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~---~~~L~~L~l~~~~~l~~~~l~~l~ 130 (864)
.+|++||+++|. ++|.++..+ ..|++|++|+| ++|..|||.|+..++.. |++|++|+|++|..|||.++..+.
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L--~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRL--CKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEE--ESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEe--CCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 357777777776 777777766 46777777777 67777777777777652 566777777777777777777665
Q ss_pred hcCCCccEEeccCCCCCCHHHh
Q 048757 131 KQCRQLVEVGFIDSGGVDEAAL 152 (864)
Q Consensus 131 ~~~~~L~~L~l~~c~~i~~~~~ 152 (864)
+ ||+|++|++++|..+||.++
T Consensus 137 ~-~~~L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 137 H-FRNLKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp G-CTTCCEEEEESCTTCCCHHH
T ss_pred c-CCCCCEEECCCCCCCCchHH
Confidence 3 66666666666666666543
No 57
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.52 E-value=1.2e-12 Score=151.75 Aligned_cols=430 Identities=13% Similarity=0.082 Sum_probs=282.2
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc
Q 048757 310 GATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS 389 (864)
Q Consensus 310 gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~ 389 (864)
+.+.+++++++++..+|+.+..++..++..+.+ + -.-.+..+.+-|.++++.++..|+.+|+++. .+
T Consensus 50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e-----------~-~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~ 116 (591)
T 2vgl_B 50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPD-----------M-AIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-VD 116 (591)
T ss_dssp GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHH-----------H-HHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-SG
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccCch-----------H-HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-hH
Confidence 346788899999999999999899887643321 1 1335677778889999999999999999976 33
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
+.... .++.+.+++.++++.|+..|+.++.++.. +++. +.+.+.++.+.++|. +.++.|+..|+.+|.
T Consensus 117 ~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~---d~d~~V~~~A~~aL~ 185 (591)
T 2vgl_B 117 KITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIA---DSNPMVVANAVAALS 185 (591)
T ss_dssp GGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTS---CSCHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhC---CCChhHHHHHHHHHH
Confidence 33332 25678899999999999999999999965 3442 233567889999986 578899999999999
Q ss_pred HhcCCCcch-HHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHH
Q 048757 469 NLAADDKCS-LEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVR 547 (864)
Q Consensus 469 ~L~~~~~~~-~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 547 (864)
.++..+... ......+.+..|+..+.+. ++..+...+.++..++.. ++.. ....++.+..++++.++.|+
T Consensus 186 ~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~---~~~~-----~~~~l~~l~~~l~~~~~~V~ 256 (591)
T 2vgl_B 186 EISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPK---DDRE-----AQSICERVTPRLSHANSAVV 256 (591)
T ss_dssp HHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCC---SHHH-----HHHHHHHHTTCSCSSTTHHH
T ss_pred HHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCC---ChHH-----HHHHHHHHHHHHcCCChHHH
Confidence 998775421 0001123466777777764 577888888888777642 1111 13567888888999999999
Q ss_pred HHHHHHHHHhcC----ChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHH
Q 048757 548 QEAAGALWNLSF----DDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIA 622 (864)
Q Consensus 548 ~~a~~~L~~Ls~----~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~ 622 (864)
.+|++++..+.. +++....+. ....+.|+.++. +++++|..|+.+|..+... ++. +.. .+..+.
T Consensus 257 ~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~----~d~~vr~~aL~~l~~i~~~~p~~---~~~--~~~~~~- 325 (591)
T 2vgl_B 257 LSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS----GEPEVQYVALRNINLIVQKRPEI---LKQ--EIKVFF- 325 (591)
T ss_dssp HHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT----SCHHHHHHHHHHHHHHHHHCCST---TTT--CTTTTS-
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc----CCccHHHHHHHHHHHHHHhChHH---HHH--HHHhhe-
Confidence 999999999874 233333332 235677776553 6899999999999988753 321 111 111222
Q ss_pred HHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcccee----eeccc
Q 048757 623 LARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIA----SIGSS 698 (864)
Q Consensus 623 lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~----~~~~l 698 (864)
.+.+++..++..|+..|.+++... +.. ..++.|.+.+.+.+ +..|..++++++.++..-+.... .+..+
T Consensus 326 ~~~~d~~~Ir~~al~~L~~l~~~~-nv~-----~iv~~L~~~l~~~d-~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll~l 398 (591)
T 2vgl_B 326 VKYNDPIYVKLEKLDIMIRLASQA-NIA-----QVLAELKEYATEVD-VDFVRKAVRAIGRCAIKVEQSAERCVSTLLDL 398 (591)
T ss_dssp CCTTSCHHHHHHHHHHHHHTCCSS-THH-----HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eccCChHHHHHHHHHHHHHHCChh-hHH-----HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 222445889999999999998433 332 24557778887765 78999999999999977652211 33335
Q ss_pred ccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhc---cChhhHHHHhhccchhHHhccccccCcccccccccc
Q 048757 699 LEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSF---SDPQAFATALASAVPKSLAQITEGARIPEAAHLRCS 775 (864)
Q Consensus 699 l~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~---~~~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~~~~~ 775 (864)
+.+....+....+ .++..+....+. ....++..+.... .++..+. .+.+.+|+.... +.+ .
T Consensus 399 l~~~~~~v~~e~i--~~l~~ii~~~p~-~~~~~v~~L~~~l~~~~~~~~~~-----~~~wilGey~~~--~~~------~ 462 (591)
T 2vgl_B 399 IQTKVNYVVQEAI--VVIRDIFRKYPN-KYESIIATLCENLDSLDEPDARA-----AMIWIVGEYAER--IDN------A 462 (591)
T ss_dssp HHTCCHHHHHHHH--HHHHHHHHHSCS-SCCTTHHHHHHTTTTCCSHHHHH-----HHHHHHHTTCTT--CTT------H
T ss_pred HcccchHHHHHHH--HHHHHHHHHCcc-hHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHccccc--ccC------H
Confidence 5565555555444 344444433322 1122344444322 2233221 234677764322 111 1
Q ss_pred hhhHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 048757 776 GAEIGRFVSMLRNPSSILKACAAVALLQFTM 806 (864)
Q Consensus 776 ~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~ 806 (864)
.+.+..+++-+.+.++.+|..+..|+..+..
T Consensus 463 ~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~ 493 (591)
T 2vgl_B 463 DELLESFLEGFHDESTQVQLTLLTAIVKLFL 493 (591)
T ss_dssp HHHHHHHSTTCSSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 2344555555556778888888888866654
No 58
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.51 E-value=1.1e-14 Score=136.74 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=93.3
Q ss_pred CCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhc---CCCccEEeccCCCCCCHHHhc--
Q 048757 79 HEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQ---CRQLVEVGFIDSGGVDEAALE-- 153 (864)
Q Consensus 79 ~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~l~~c~~i~~~~~~-- 153 (864)
..+|++|++ ++|. ||+.|+..+ ..|++|++|+|++|..+||.++..|+.. |++|++|+|++|..|||.++.
T Consensus 60 ~~~L~~LDL--s~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 60 KYKIQAIDA--TDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CCCEEEEEE--ESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred CceEeEEeC--cCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 357999999 8887 999999998 4799999999999999999999999873 789999999999999999988
Q ss_pred -CCCCcCEEEEeCCCCCCHHH--HHHHHhcCCCCcE
Q 048757 154 -NLSSVRYLSIAGTRNLNWSS--AAIAWSKLTSLVG 186 (864)
Q Consensus 154 -~~~~L~~L~l~~c~~~~~~~--l~~l~~~~~~L~~ 186 (864)
+|++|++|++++|+.+||.+ ...+...+|+++.
T Consensus 136 ~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp GGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred hcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 89999999999999999976 4667788998765
No 59
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.51 E-value=2.2e-13 Score=149.65 Aligned_cols=187 Identities=11% Similarity=0.079 Sum_probs=99.6
Q ss_pred hcCCCCcEEEecCCCCchH----HHH--hCCcccceeeeecCC--CCC---HHHHHHH---HhCCCCcceEEeccCCCCC
Q 048757 29 SRCTNLQALWFRGALSADA----MII--LQARRLREINVEFCR--ELT---DAIFSAI---VARHEMLEILHFGLDVCDR 94 (864)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~----l~~--~~~~~L~~L~l~~c~--~l~---d~~l~~l---~~~~~~L~~L~l~~~~c~~ 94 (864)
..+++|++|+|++|...+. +.. ..+++|++|++++|. .++ ..++..+ ...+++|++|+| ++| .
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L--s~n-~ 105 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL--SDN-A 105 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC--CSC-C
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC--CCC-c
Confidence 3466666666666643322 111 156666666666662 222 2233322 234666666666 443 3
Q ss_pred CCHHHHHH---HHhcCcCcCeeeecccCCCcHHHHHHHHhc---C---------CCccEEeccCCCCCCHHH-------h
Q 048757 95 ISSDAIKT---VAYCCPKLRRLWLSGVREVNGDAINALAKQ---C---------RQLVEVGFIDSGGVDEAA-------L 152 (864)
Q Consensus 95 i~~~~l~~---l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~---------~~L~~L~l~~c~~i~~~~-------~ 152 (864)
+++.++.. ....+++|++|++++|. +++.+...+... + ++|++|++++|. +++.+ +
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 183 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTF 183 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHHHH
Confidence 55443222 23456666666666665 555544443332 2 666666666654 44322 2
Q ss_pred cCCCCcCEEEEeCCCCCCHHHHHHHH----hcCCCCcEEecCCCCCC---HHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 153 ENLSSVRYLSIAGTRNLNWSSAAIAW----SKLTSLVGLDTSRTNIN---LSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 153 ~~~~~L~~L~l~~c~~~~~~~l~~l~----~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
..+++|++|++++| .+++.++..+. ..+++|+.|+++++..+ ...+...+..+++|+.|++++|..-.
T Consensus 184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 25666666666666 45655544433 25666666666664443 24445555566666666666666433
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.49 E-value=2.7e-13 Score=153.04 Aligned_cols=207 Identities=15% Similarity=0.216 Sum_probs=125.8
Q ss_pred CCCCeecCCCCCCCHHH---HHHHHhcCCCCcEEEecCCCCchH----HHH---hCCcccceeeeecCCCCCHHHHHHH-
Q 048757 7 CLWSSLDLRPYKFDTSA---AESLSSRCTNLQALWFRGALSADA----MII---LQARRLREINVEFCRELTDAIFSAI- 75 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~---l~~i~~~~~~L~~L~l~~~~~~~~----l~~---~~~~~L~~L~l~~c~~l~d~~l~~l- 75 (864)
+.++.|+|+++.++... +......+++|++|++++|...+. +.. ...++|++|++++|. +++.+...+
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~ 220 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLC 220 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHH
Confidence 35788888887766543 334445578888888888764332 111 135578888888775 666553332
Q ss_pred --HhCCCCcceEEeccCCCCCCCHHHHHHHHh----cCcCcCeeeecccCCCcHHHHHHHH---hcCCCccEEeccCCCC
Q 048757 76 --VARHEMLEILHFGLDVCDRISSDAIKTVAY----CCPKLRRLWLSGVREVNGDAINALA---KQCRQLVEVGFIDSGG 146 (864)
Q Consensus 76 --~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~----~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~ 146 (864)
...+++|++|++ ++| .+++.++..++. .+++|++|++++|. +++.++..+. .++++|++|++++| .
T Consensus 221 ~~l~~~~~L~~L~L--s~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~ 295 (461)
T 1z7x_W 221 GIVASKASLRELAL--GSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGN-E 295 (461)
T ss_dssp HHHHHCTTCCEEEC--CSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTC-C
T ss_pred HHHHhCCCccEEec--cCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCC-C
Confidence 345777888877 555 577777665543 46777777777775 7776644333 34777777777776 3
Q ss_pred CCHHHhc--------CCCCcCEEEEeCCCCCCHHH---HHHHHhcCCCCcEEecCCCCCCHH---HHHHHhcC-CCCCcE
Q 048757 147 VDEAALE--------NLSSVRYLSIAGTRNLNWSS---AAIAWSKLTSLVGLDTSRTNINLS---SVTRLLSS-SRNLKV 211 (864)
Q Consensus 147 i~~~~~~--------~~~~L~~L~l~~c~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~---~l~~~~~~-~~~L~~ 211 (864)
+++.+.. ..++|++|++++|. +++.+ +......+++|+.|+++++..+.. .+.+.+.. .++|+.
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 5555433 23577777777764 44432 223334567777777777444433 33333332 456777
Q ss_pred EEccCCCCc
Q 048757 212 LIALNCPVF 220 (864)
Q Consensus 212 L~~~~c~~~ 220 (864)
|++.+|..-
T Consensus 375 L~L~~n~i~ 383 (461)
T 1z7x_W 375 LWLADCDVS 383 (461)
T ss_dssp EECTTSCCC
T ss_pred EECCCCCCC
Confidence 777777543
No 61
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=5.2e-12 Score=125.78 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=158.4
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
+.++.|+++|+++++.+|..|+..|+.+. +.++++.|+++|.++++.++..++.+|+.+.
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-- 78 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIG------------------DERAVEPLIKALKDEDAWVRRAAADALGQIG-- 78 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--
Confidence 34789999999999999999999998864 2467899999999999999999999999954
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
+.+.++.|+++|+++++.++..|+.+|+++.. ...++.|++++. +++..++..|+.+|+
T Consensus 79 --------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~---d~~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 79 --------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALK---DEDWFVRIAAAFALG 137 (211)
T ss_dssp --------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 45678999999999999999999999999864 347899999996 578899999999999
Q ss_pred HhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHH
Q 048757 469 NLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQ 548 (864)
Q Consensus 469 ~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 548 (864)
.+. ....++.|..++.+ +++.++..++.+|..+.. ..+++.|..+++++++.+|.
T Consensus 138 ~~~----------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~ 192 (211)
T 3ltm_A 138 EIG----------DERAVEPLIKALKD-EDGWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFARK 192 (211)
T ss_dssp HHC----------CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHHH
T ss_pred HcC----------CHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHHH
Confidence 883 23578899999977 468999999999999864 35788999999999999999
Q ss_pred HHHHHHHHhcCCh
Q 048757 549 EAAGALWNLSFDD 561 (864)
Q Consensus 549 ~a~~~L~~Ls~~~ 561 (864)
.|..+|.++....
T Consensus 193 ~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 193 VAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHhcCCCC
Confidence 9999999986654
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.39 E-value=1e-11 Score=122.58 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=159.0
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~ 388 (864)
++.+.++++|+++++.+|..|+..|+.+. +.+.++.|+++|+++++.++..++.+|+.+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~------------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIG------------------DERAVEPLIKALKDEDAWVRRAAADALGQIG-- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHC------------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcC------------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhC--
Confidence 44789999999999999999999999864 2357899999999999999999999999953
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALA 468 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~ 468 (864)
...+++.|+++|.++++.++..|+.+|+++... ..++.|++++. +++..++..|+.+|+
T Consensus 74 --------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~---d~~~~vr~~a~~aL~ 132 (201)
T 3ltj_A 74 --------DERAVEPLIKALKDEDGWVRQSAAVALGQIGDE----------RAVEPLIKALK---DEDWFVRIAAAFALG 132 (201)
T ss_dssp --------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----------GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 346789999999999999999999999998642 47889999986 478899999999998
Q ss_pred HhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHH
Q 048757 469 NLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQ 548 (864)
Q Consensus 469 ~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 548 (864)
.+. ..+.++.|..++.++ ++.++..|+.+|..+.. ..+++.|..++.++++.+|.
T Consensus 133 ~~~----------~~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~ 187 (201)
T 3ltj_A 133 EIG----------DERAVEPLIKALKDE-DGWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFARK 187 (201)
T ss_dssp HHT----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHHH
T ss_pred HhC----------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHHH
Confidence 884 346788999999884 68999999999999953 25788999999999999999
Q ss_pred HHHHHHHHhc
Q 048757 549 EAAGALWNLS 558 (864)
Q Consensus 549 ~a~~~L~~Ls 558 (864)
.|..+|..+.
T Consensus 188 ~A~~aL~~l~ 197 (201)
T 3ltj_A 188 VAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 63
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.37 E-value=1.3e-10 Score=134.98 Aligned_cols=408 Identities=12% Similarity=0.064 Sum_probs=270.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-c
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD-S 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~ 389 (864)
++.+.+.++++++.+|..|+.+++.+...+.+. + .+.++.+..+|.+.++.++..|+.+|..++.. +
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~----------v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL----------M--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG----------G--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH----------H--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 688889999999999999999999998655332 1 36778888899999999999999999999875 3
Q ss_pred hhHHHHHhcCcHHHHHHHHcc---------------CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc--
Q 048757 390 KVAKAVSENGGIDILADLARS---------------TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW-- 452 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~---------------~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~-- 452 (864)
+....+ ...++.++++|.+ .++..+..++++|+.++..+.. . .....+.|..++...
T Consensus 212 ~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~---~-~~~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 212 DMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDD---S-SEAMNDILAQVATNTET 285 (618)
T ss_dssp HHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHH---H-HHTTHHHHHHHHHTSCC
T ss_pred HHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHHHHhcccc
Confidence 332233 2568888887753 4899999999999999864321 1 122445555555321
Q ss_pred -CCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccCh
Q 048757 453 -SSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGA 531 (864)
Q Consensus 453 -~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~ 531 (864)
...+..+...|+.++..+...+. +. ..++..|..++.+. +++++..|+.+|..++.. .+. .+ ...
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~---~p~---~~--~~~ 351 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNN-DKNIRYVALTSLLKTVQT---DHN---AV--QRH 351 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCS-STTTHHHHHHHHHHHHHH---HHH---HH--GGG
T ss_pred ccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCC-CCchHHHHHHHHHHHHhh---CHH---HH--HHH
Confidence 11345788899999988754321 11 24678888888874 689999999999999974 111 11 134
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHH
Q 048757 532 LEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIA 610 (864)
Q Consensus 532 i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~ 610 (864)
...++..+.+++..+|..|+.+|..++...... . .++.|...+.+ .+++++..++.+++.++.. +....+
T Consensus 352 ~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~-~-----iv~eL~~~l~~---~d~e~r~~~v~~I~~la~k~~~~~~~ 422 (618)
T 1w63_A 352 RSTIVDCLKDLDVSIKRRAMELSFALVNGNNIR-G-----MMKELLYFLDS---CEPEFKADCASGIFLAAEKYAPSKRW 422 (618)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTH-H-----HHHHHHHHHHH---CCHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHcccccHH-H-----HHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 567888999999999999999999997754322 2 34778888887 8899999999999999875 333333
Q ss_pred hhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcC--CCcHHHHHHHHHHHHHhhcC
Q 048757 611 IGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSS--SLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 611 i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~--~~~~~~r~~aa~aL~~l~~~ 687 (864)
.++.|+++++.....++..++..+..+.. +++.+.. +++.|++.+.+ ...+..+ .++|.+|..+..
T Consensus 423 -----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~-----~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~~ 491 (618)
T 1w63_A 423 -----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY-----TVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGDL 491 (618)
T ss_dssp -----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-----HHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-----HHHHHHHHHhcccccHHHHH-HHHHHHhhhHHH
Confidence 36789999988777777777777777765 5555533 45578888875 2335555 589999977641
Q ss_pred CccceeeecccccCC-CcccchHHHHHHHHHHHHhhcccccchhhhhHHHHh-ccChhhHHHHhhccchhHHhccccccC
Q 048757 688 RMEDIASIGSSLEGT-SESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRS-FSDPQAFATALASAVPKSLAQITEGAR 765 (864)
Q Consensus 688 ~~~~~~~~~~ll~~~-~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~-~~~~~~~~~a~~~~a~~~l~~~~~~~~ 765 (864)
-.+. .+.+. ...+....+ + ..+..++.. ..++.++..+. .|+..++... +
T Consensus 492 i~~~------~~~~~~~~~~~~~~~----~-------------~~l~~~l~~~~~~~~vr~~~l--ta~~Kl~~~~-~-- 543 (618)
T 1w63_A 492 LVSG------QCEEEEPIQVTEDEV----L-------------DILESVLISNMSTSVTRGYAL--TAIMKLSTRF-T-- 543 (618)
T ss_dssp HTTC------CCSSSCCCCCCHHHH----H-------------HHHHHHHHSTTCCHHHHHHHH--HHHHHHHTTC-S--
T ss_pred hccc------ccccccccCCCHHHH----H-------------HHHHHHHhccCCCHHHHHHHH--HHHHHHHHhC-c--
Confidence 1100 00000 001111111 1 124444443 23444444433 3333443211 1
Q ss_pred cccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q 048757 766 IPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFT 805 (864)
Q Consensus 766 ~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~ 805 (864)
+. .......|..+..+.|+++|.+|...+.-+.
T Consensus 544 --~~-----~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~ 576 (618)
T 1w63_A 544 --CT-----VNRIKKVVSIYGSSIDVELQQRAVEYNALFK 576 (618)
T ss_dssp --SC-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred --ch-----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 10 1223455667788999999999998875554
No 64
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.37 E-value=8.2e-11 Score=136.78 Aligned_cols=432 Identities=10% Similarity=0.040 Sum_probs=284.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
....++++.+++.+.++-+...+..++..+++. . .-++..+.+-|+++++.++..|+++|+++.. ++
T Consensus 72 ~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~---------~---~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~ 138 (618)
T 1w63_A 72 QLECLKLIASQKFTDKRIGYLGAMLLLDERQDV---------H---LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE 138 (618)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHH---------H---HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH
T ss_pred HHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHH---------H---HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH
Confidence 456778888999999998888888887544321 0 1246677888899999999999999999874 32
Q ss_pred hHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 048757 391 VAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALAN 469 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~ 469 (864)
. . ...++.+.+++++.++.++..|+.++.++.. +++.. .+.++.+.+++. +.++.|+..|+.+|..
T Consensus 139 ~----~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~---D~d~~V~~~Al~~L~~ 205 (618)
T 1w63_A 139 M----C-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLN---EKNHGVLHTSVVLLTE 205 (618)
T ss_dssp H----H-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTT---CCCHHHHHHHHHHHHH
T ss_pred H----H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhC---CCCHhHHHHHHHHHHH
Confidence 2 2 2457788899999999999999999999975 44322 146666777775 5788999999999999
Q ss_pred hcCCCcc-hHHHHhcCcHHHHHHHHHc--------------cCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHH
Q 048757 470 LAADDKC-SLEVARAGGVHALVMLARS--------------FMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEA 534 (864)
Q Consensus 470 L~~~~~~-~~~i~~~~~i~~Lv~ll~~--------------~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~ 534 (864)
++..+.. ...+ ...++.++.+|.+ ..++..+..++.+|..++.. .+... ....+.
T Consensus 206 i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~---~~~~~-----~~~~~~ 275 (618)
T 1w63_A 206 MCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN---DDDSS-----EAMNDI 275 (618)
T ss_dssp HCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT---CHHHH-----HTTHHH
T ss_pred HHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC---CHHHH-----HHHHHH
Confidence 9876432 1122 2568888888864 13578888999999999864 22211 233445
Q ss_pred HHHHhc------CCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhh
Q 048757 535 LVQLTF------SKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANS 608 (864)
Q Consensus 535 L~~lL~------~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~ 608 (864)
|.+++. +.+..+..+|+.++..+...+..+. .+++.|..++.+ .++.+|..|+.+|..+....+
T Consensus 276 L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~-----~a~~~L~~~L~~---~d~~vr~~aL~~L~~i~~~~p-- 345 (618)
T 1w63_A 276 LAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV-----LAINILGRFLLN---NDKNIRYVALTSLLKTVQTDH-- 345 (618)
T ss_dssp HHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH-----HHHHHHHHHHTC---SSTTTHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHHhC---CCCchHHHHHHHHHHHHhhCH--
Confidence 555543 2345799999999999866543222 357888888886 788999999999998876421
Q ss_pred HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 609 IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 609 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
.+. ......++.++.+++..++..|+.+|..++..... .. .++.|...+.+.+ +..|..++.+++.++..-
T Consensus 346 -~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv-~~-----iv~eL~~~l~~~d-~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 346 -NAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI-RG-----MMKELLYFLDSCE-PEFKADCASGIFLAAEKY 416 (618)
T ss_dssp -HHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST-HH-----HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHSS
T ss_pred -HHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH-HH-----HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHh
Confidence 112 12456888999999999999999999999864332 22 3467788777765 889999999999998854
Q ss_pred cccee----eecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHH---Hh--ccChhhHHHHhhccchhHHhc
Q 048757 689 MEDIA----SIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFV---RS--FSDPQAFATALASAVPKSLAQ 759 (864)
Q Consensus 689 ~~~~~----~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~---~~--~~~~~~~~~a~~~~a~~~l~~ 759 (864)
+.... .+..++++....+....+ ..+..+....++ ....++..+. .. ..++..+. +.+.+|+
T Consensus 417 ~~~~~~~v~~ll~lL~~~~~~v~~~~~--~~l~~ii~~~p~-l~~~~v~~L~~~l~~~~~~~~~~~~------~~wilGE 487 (618)
T 1w63_A 417 APSKRWHIDTIMRVLTTAGSYVRDDAV--PNLIQLITNSVE-MHAYTVQRLYKAILGDYSQQPLVQV------AAWCIGE 487 (618)
T ss_dssp CCCHHHHHHHHHHHHHHTGGGSCSSHH--HHHHHHHHHSCS-THHHHHHHHHHHHHHCCSCSHHHHH------HHHHHHH
T ss_pred CccHHHHHHHHHHHHHhccchhHHHHH--HHHHHHHhcChh-HHHHHHHHHHHHHhcccccHHHHHH------HHHHHhh
Confidence 32222 222344444444444333 333444433322 1122333333 32 12232222 3446665
Q ss_pred ccccc---Cccccccc-ccchhhHHHHHHHhc--CCcHHHHHHHHHHHHhhcc
Q 048757 760 ITEGA---RIPEAAHL-RCSGAEIGRFVSMLR--NPSSILKACAAVALLQFTM 806 (864)
Q Consensus 760 ~~~~~---~~~~~~~~-~~~~~~i~~lv~~l~--~~~~~~~~~Aa~al~~~~~ 806 (864)
....- ...+.... ......+..|..+++ ..++.+|..+..|+..+..
T Consensus 488 y~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~ 540 (618)
T 1w63_A 488 YGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLST 540 (618)
T ss_dssp HHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHT
T ss_pred hHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 43210 00000000 001225566777776 5789999999999977755
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.37 E-value=1.3e-11 Score=122.83 Aligned_cols=188 Identities=18% Similarity=0.119 Sum_probs=159.3
Q ss_pred HhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHH
Q 048757 356 RHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGA 435 (864)
Q Consensus 356 ~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~ 435 (864)
+.+.++.|+..|+++++.++..++..|+.+. +..+++.|++++.++++.++..++.+|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3567999999999999999999999999843 35789999999999999999999999999864
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
.+.++.|++++. ++++.++..|+.+|+.+. ..+.++.|+.++.+ +++.++..|+.+|..+..
T Consensus 80 ---~~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~- 141 (211)
T 3ltm_A 80 ---ERAVEPLIKALK---DEDGWVRQSAAVALGQIG----------DERAVEPLIKALKD-EDWFVRIAAAFALGEIGD- 141 (211)
T ss_dssp ---GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHc---CCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCC-
Confidence 347899999996 578899999999998874 34578999999987 468999999999999863
Q ss_pred CCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHH
Q 048757 516 GDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAA 595 (864)
Q Consensus 516 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~ 595 (864)
...++.|..+++++++.+|..|+.+|..+.. ..+++.|..++.+ +++.+|..|.
T Consensus 142 -------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~ 195 (211)
T 3ltm_A 142 -------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAV 195 (211)
T ss_dssp -------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHH
T ss_pred -------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHH
Confidence 2478999999999999999999999999843 2357888999987 8999999999
Q ss_pred HHHHHhccC
Q 048757 596 GALWGLSLS 604 (864)
Q Consensus 596 ~aL~~L~~~ 604 (864)
.+|.++...
T Consensus 196 ~aL~~~~~~ 204 (211)
T 3ltm_A 196 NYLETHKSF 204 (211)
T ss_dssp HHHHC----
T ss_pred HHHHhcCCC
Confidence 999987655
No 66
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.35 E-value=2.2e-11 Score=120.21 Aligned_cols=185 Identities=18% Similarity=0.129 Sum_probs=158.6
Q ss_pred hCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHH
Q 048757 357 HGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAI 436 (864)
Q Consensus 357 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i 436 (864)
.+..+.+++.|+++++.++..|+.+|+.+. ..+.++.|+++++++++.++..|+.+|+.+...
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~------- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIG----------DERAVEPLIKALKDEDAWVRRAAADALGQIGDE------- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcC----------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------
Confidence 456788999999999999999999999844 346799999999999999999999999998642
Q ss_pred HhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcC
Q 048757 437 ARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHG 516 (864)
Q Consensus 437 ~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~ 516 (864)
.+++.|+.++. ++++.++..|+.+|+.+. ....++.|+.++.+ +++.++..|+++|..+..
T Consensus 76 ---~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 76 ---RAVEPLIKALK---DEDGWVRQSAAVALGQIG----------DERAVEPLIKALKD-EDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ---GGHHHHHHHTT---CSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTC--
T ss_pred ---HHHHHHHHHHc---CCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhCC--
Confidence 47899999996 478899999999998874 24578889999987 468999999999999864
Q ss_pred CCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHH
Q 048757 517 DSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAG 596 (864)
Q Consensus 517 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~ 596 (864)
...++.|..++.++++.+|..|+.+|..+.. ..+++.|..++.+ +++.+|..|..
T Consensus 137 ------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d---~~~~vr~~A~~ 191 (201)
T 3ltj_A 137 ------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAET---GTGFARKVAVN 191 (201)
T ss_dssp ------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHH---CCHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhC---CCHHHHHHHHH
Confidence 2578999999999999999999999999832 2367888899987 89999999999
Q ss_pred HHHHhc
Q 048757 597 ALWGLS 602 (864)
Q Consensus 597 aL~~L~ 602 (864)
+|..+.
T Consensus 192 aL~~l~ 197 (201)
T 3ltj_A 192 YLETHK 197 (201)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 998764
No 67
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=4e-12 Score=138.16 Aligned_cols=208 Identities=16% Similarity=0.098 Sum_probs=143.9
Q ss_pred cCCCCCCeecCCCCCCCHH---HHHHHHhcCC-CCcEEEecCCCCchH----HHH---hCCcccceeeeecCCCCCHHHH
Q 048757 4 SSPCLWSSLDLRPYKFDTS---AAESLSSRCT-NLQALWFRGALSADA----MII---LQARRLREINVEFCRELTDAIF 72 (864)
Q Consensus 4 ~~p~lw~~ldL~~~~~~~~---~l~~i~~~~~-~L~~L~l~~~~~~~~----l~~---~~~~~L~~L~l~~c~~l~d~~l 72 (864)
..|..++.|||+++.++.. .+......++ +|++|++++|...+. +.. ..+++|++|++++|. +++.+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 3466688999998876543 3334445677 899999999864431 222 124899999999987 655444
Q ss_pred H---HHHhCC-CCcceEEeccCCCCCCCHHHHHHHHh---c-CcCcCeeeecccCCCcHHHHHHHH---hcCC-CccEEe
Q 048757 73 S---AIVARH-EMLEILHFGLDVCDRISSDAIKTVAY---C-CPKLRRLWLSGVREVNGDAINALA---KQCR-QLVEVG 140 (864)
Q Consensus 73 ~---~l~~~~-~~L~~L~l~~~~c~~i~~~~l~~l~~---~-~~~L~~L~l~~~~~l~~~~l~~l~---~~~~-~L~~L~ 140 (864)
. .....+ ++|++|++ ++|. +++.+...+.. . +++|++|++++|. +++.+...+. ..++ +|++|+
T Consensus 98 ~~l~~~l~~~~~~L~~L~L--s~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 98 DELVKTLAAIPFTITVLDL--GWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp HHHHHHHHTSCTTCCEEEC--CSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHHHHHhCCCCccEEEC--cCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEee
Confidence 3 333445 89999999 6664 66665555543 3 5689999999987 7765554443 3344 899999
Q ss_pred ccCCCCCCHHHh-------cCC-CCcCEEEEeCCCCCCHHHHH----HHHhcCCCCcEEecCC---CCCCHHHHHHHhcC
Q 048757 141 FIDSGGVDEAAL-------ENL-SSVRYLSIAGTRNLNWSSAA----IAWSKLTSLVGLDTSR---TNINLSSVTRLLSS 205 (864)
Q Consensus 141 l~~c~~i~~~~~-------~~~-~~L~~L~l~~c~~~~~~~l~----~l~~~~~~L~~L~l~~---~~~~~~~l~~~~~~ 205 (864)
+++|. +++.+. ..+ ++|++|++++|. +++.+.. .+....++|+.|++++ ++.+...+...+..
T Consensus 174 Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~ 251 (362)
T 3goz_A 174 LRGNN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDS 251 (362)
T ss_dssp CTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTT
T ss_pred ecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhc
Confidence 99974 554332 255 599999999875 5553322 3333356899999998 66677888888888
Q ss_pred CCCCcEEEccCCC
Q 048757 206 SRNLKVLIALNCP 218 (864)
Q Consensus 206 ~~~L~~L~~~~c~ 218 (864)
+++|+.|++.+|.
T Consensus 252 l~~L~~L~L~~n~ 264 (362)
T 3goz_A 252 LKHLQTVYLDYDI 264 (362)
T ss_dssp TTTCSEEEEEHHH
T ss_pred CCCccEEEeccCC
Confidence 8999999999887
No 68
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.32 E-value=8.5e-11 Score=149.03 Aligned_cols=464 Identities=13% Similarity=0.001 Sum_probs=280.3
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-
Q 048757 310 GATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD- 388 (864)
Q Consensus 310 gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~- 388 (864)
-++.|++.|.++++.+|..|+.+|+.++....+ ... ...++.++..+.++++.+|..++.+|+.++..
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~------~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l 117 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE------YQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGEL 117 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH------HHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH------HHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC
Confidence 368899999999999999999999998854321 111 34577888888898999999999999998762
Q ss_pred -ch-----hHHHHHhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcccCCCCHHH
Q 048757 389 -SK-----VAKAVSENGGIDILADLAR-STNRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFKWSSWNDGV 459 (864)
Q Consensus 389 -~~-----~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v 459 (864)
+. ... -.-...+|.|++.+. ++++.++..|+.+|..++. .+.....+ ...++.+...+. +.+..+
T Consensus 118 ~~~~~~~~~~~-~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~---~~~~~v 191 (1230)
T 1u6g_C 118 PPASSGSALAA-NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLT---SPRLAV 191 (1230)
T ss_dssp C-----CCTHH-HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGG---CSSHHH
T ss_pred CCcccccchHH-HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHc---CCcHHH
Confidence 21 011 112345788889888 5789999999999999874 22111111 224555666664 467799
Q ss_pred HHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHh
Q 048757 460 LERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLT 539 (864)
Q Consensus 460 ~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL 539 (864)
|..|+.+|..++...... + -...++.++..+...+...++..++.++..++... ...... .-...++.++..+
T Consensus 192 R~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~--~l~~l~~~ll~~l 264 (1230)
T 1u6g_C 192 RKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA--GHRIGE--YLEKIIPLVVKFC 264 (1230)
T ss_dssp HHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS--SGGGTT--SCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh--HHHHHH--HHHHHHHHHHHHh
Confidence 999999999998754321 1 23458888888877544567778899999988742 111111 1247889999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCChh--hHHHHHHCCChHHHHHHHHh----------------------------------c
Q 048757 540 FSKHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVALVRS----------------------------------C 583 (864)
Q Consensus 540 ~~~~~~v~~~a~~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~lL~~----------------------------------~ 583 (864)
.++++++|..++.++..++.... .+..+- ..++.+++.+.. .
T Consensus 265 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~--~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1230)
T 1u6g_C 265 NVDDDELREYCIQAFESFVRRCPKEVYPHVS--TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDD 342 (1230)
T ss_dssp SSCCTTTHHHHHHHHHHHHHCTTCCCHHHHH--HHHHHHTTCCCCC----------------------------------
T ss_pred cCCCHHHHHHHHHHHHHHHHHChHHHHHhHH--HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccc
Confidence 98899999999999888765411 111110 011111111100 0
Q ss_pred CCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc---------------
Q 048757 584 SSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG--------------- 647 (864)
Q Consensus 584 ~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~--------------- 647 (864)
....+.+|..|+.++..++.. ++.-.. .-...++.++..+++.++.++..++.++..+.....
T Consensus 343 ~d~~~~vR~~A~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 421 (1230)
T 1u6g_C 343 DDMSWKVRRAAAKCLDAVVSTRHEMLPE-FYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQG 421 (1230)
T ss_dssp --CTTHHHHHHHHHHHHHHTTCCTTHHH-HHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------C
T ss_pred cccCHHHHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccc
Confidence 012356799999999988864 221111 124567888888888899999999998887764110
Q ss_pred --cHH--HHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcccee--------eecccccCCCc--ccchHHHHH
Q 048757 648 --NAL--CIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIA--------SIGSSLEGTSE--SENLDVIRR 713 (864)
Q Consensus 648 --~~~--~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~--------~~~~ll~~~~~--~v~~~~~~~ 713 (864)
... .-.-...++.+.+.+.+++ +.+|..+..+++.+....++.+. .+...+.+... .++..++
T Consensus 422 ~~~~~~~~~~l~~ll~~l~~~l~~~~-~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~-- 498 (1230)
T 1u6g_C 422 ETPLTMLQSQVPNIVKALHKQMKEKS-VKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDAL-- 498 (1230)
T ss_dssp CCHHHHHHHHTTHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHH--
T ss_pred cchHHHHHHHhhHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHH--
Confidence 001 1112334566677788775 78888888899988876543222 22335666654 4444443
Q ss_pred HHHHHHHhhccccc----chhhhhHHHHhccChhhHHHHhhccchhHHhcccc---ccC-cccccccccchhhHHHHHHH
Q 048757 714 MALKHIEDFCAGRI----ALKHIEDFVRSFSDPQAFATALASAVPKSLAQITE---GAR-IPEAAHLRCSGAEIGRFVSM 785 (864)
Q Consensus 714 ~al~~l~~~~~g~~----~~~~i~~l~~~~~~~~~~~~a~~~~a~~~l~~~~~---~~~-~~~~~~~~~~~~~i~~lv~~ 785 (864)
.++..+........ ....++.++....+...+.... ++.+++.+.. ... .....-..+-...++.++..
T Consensus 499 ~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~---al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 575 (1230)
T 1u6g_C 499 SCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE---ALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKR 575 (1230)
T ss_dssp HHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHH---HHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHH---HHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHH
Confidence 33333322111111 1123333444444443322222 1223333221 100 00001012234466888888
Q ss_pred h--cCCcHHHHHHHHHHHHhhcc
Q 048757 786 L--RNPSSILKACAAVALLQFTM 806 (864)
Q Consensus 786 l--~~~~~~~~~~Aa~al~~~~~ 806 (864)
+ .+.++.+|..|+.++..+..
T Consensus 576 l~~~d~~~~vr~~a~~~lg~L~~ 598 (1230)
T 1u6g_C 576 LKAADIDQEVKERAISCMGQIIC 598 (1230)
T ss_dssp HSCSSSCHHHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHH
Confidence 8 77889999999999966654
No 69
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=2.3e-11 Score=131.78 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=112.9
Q ss_pred hCCcccceeeeecCCCCCHHHHHHHHhC----CCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHH
Q 048757 51 LQARRLREINVEFCRELTDAIFSAIVAR----HEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAI 126 (864)
Q Consensus 51 ~~~~~L~~L~l~~c~~l~d~~l~~l~~~----~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l 126 (864)
...++|++|++++|. +++.+...++.. +++|++|+| ++| .+++.++..++..+++|++|++++|. +++.+.
T Consensus 69 ~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~L--s~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~ 143 (372)
T 3un9_A 69 EVLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNL--ASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEAC 143 (372)
T ss_dssp HHHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEEC--TTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHH
T ss_pred HHHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEe--cCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHH
Confidence 345678888888876 777766655432 357888888 655 47777777777777788888888876 777776
Q ss_pred HHHHh----cCCCccEEeccCCCCCCHHHhc-------CCCCcCEEEEeCCCCCCHHHHHHHH---hcCCCCcEEecCCC
Q 048757 127 NALAK----QCRQLVEVGFIDSGGVDEAALE-------NLSSVRYLSIAGTRNLNWSSAAIAW---SKLTSLVGLDTSRT 192 (864)
Q Consensus 127 ~~l~~----~~~~L~~L~l~~c~~i~~~~~~-------~~~~L~~L~l~~c~~~~~~~l~~l~---~~~~~L~~L~l~~~ 192 (864)
..++. .+++|++|+|++|. +++.+.. .+++|++|++++|. +++.++..+. ..+++|+.|+++++
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 66653 35778888888874 6665443 56778888887764 7776655443 45667888888875
Q ss_pred CCCHH---HHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 193 NINLS---SVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 193 ~~~~~---~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
.++.. .+...+...++|++|++++|+.-+..
T Consensus 222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 222 GAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 55443 44555555677888888877644443
No 70
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.27 E-value=1.6e-11 Score=133.03 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=134.6
Q ss_pred CCCCcEEEecCCCCchH----HHHh---CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHH
Q 048757 31 CTNLQALWFRGALSADA----MIIL---QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTV 103 (864)
Q Consensus 31 ~~~L~~L~l~~~~~~~~----l~~~---~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l 103 (864)
.++|++|++++|...+. +... .+++|++|+|++|. +++.++..+...+++|++|+| ++| .+++.++..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~L--s~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGL--QLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEEC--CSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhc--CCC-CCCHHHHHHH
Confidence 46799999999975532 2222 45799999999997 999999998888899999999 766 6999998887
Q ss_pred Hh----cCcCcCeeeecccCCCcHHHHHHHH---hcCCCccEEeccCCCCCCHHHhc-------CCCCcCEEEEeCCCCC
Q 048757 104 AY----CCPKLRRLWLSGVREVNGDAINALA---KQCRQLVEVGFIDSGGVDEAALE-------NLSSVRYLSIAGTRNL 169 (864)
Q Consensus 104 ~~----~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~~L~~L~l~~c~~i~~~~~~-------~~~~L~~L~l~~c~~~ 169 (864)
+. .+++|++|++++|. +++.+...++ ..+++|++|+|++|. +++.++. .+++|+.|++++| .+
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i 223 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-GA 223 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-CC
T ss_pred HHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-CC
Confidence 64 46889999999997 9998877765 468999999999975 8876643 6789999999998 58
Q ss_pred CHHHHHHHH---hcCCCCcEEecCCCCCCHHHHHHHh
Q 048757 170 NWSSAAIAW---SKLTSLVGLDTSRTNINLSSVTRLL 203 (864)
Q Consensus 170 ~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~~~ 203 (864)
++.+...+. ..+++|+.|+++++.++......+.
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 888766654 3679999999999777766655443
No 71
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.23 E-value=5.6e-10 Score=136.34 Aligned_cols=354 Identities=11% Similarity=0.013 Sum_probs=226.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS- 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~- 389 (864)
++.+.+.+++.+..+|..|+.+++.++.+.... ...... ...++.++..++++++.++..++++|+.++..-
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~------~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKV------QRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH------HHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHH------HHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 456666777888999999999999998543210 111111 346888999999999999999999999987521
Q ss_pred -hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC------CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHH
Q 048757 390 -KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG------EDHKGAIARAGGIKALVDLIFKWSSWNDGVLER 462 (864)
Q Consensus 390 -~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~------~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~ 462 (864)
+....-.-...++.+++.+++. +.++..|+.+|.+++.. +.....+ ...++.|++.+.+ .+.+..++..
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~-~d~~~~vr~~ 519 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANR-IDNEFNARAS 519 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTC-SCCGGGHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhC-cCcchHHHHH
Confidence 1000000123467788888775 89999999999988652 1122222 2356777788863 1233688999
Q ss_pred HHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHcc--------------CchhHHHHHHHHHHHHhhcCCCCcccchhhhc
Q 048757 463 AAGALANLAADDKCSLEVARAGGVHALVMLARSF--------------MFEGVQEQAARALANLVAHGDSNSNNAAVGLE 528 (864)
Q Consensus 463 a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~--------------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~ 528 (864)
++.++..++........-.-...++.++..+... ....++..++.+|..++..-. ..... .-
T Consensus 520 a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~--~~ 595 (861)
T 2bpt_A 520 AFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSP--SSVEP--VA 595 (861)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCG--GGTGG--GH
T ss_pred HHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhh--hhhHH--HH
Confidence 9999999986543211111123566677776632 134577789999999987421 11111 12
Q ss_pred cChHHHHHHHhcCCCH-HHHHHHHHHHHHhcCChh--hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc
Q 048757 529 TGALEALVQLTFSKHE-GVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE 605 (864)
Q Consensus 529 ~~~i~~L~~lL~~~~~-~v~~~a~~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~ 605 (864)
...++.++..+.+.+. .+++.+..++..++.... ....+- ..++.+...+.+ .++.++..|+.++..++..-
T Consensus 596 ~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~--~i~~~l~~~l~~---~~~~vr~~a~~~l~~l~~~~ 670 (861)
T 2bpt_A 596 DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE--TFSPYLLKALNQ---VDSPVSITAVGFIADISNSL 670 (861)
T ss_dssp HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHHC---TTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHh
Confidence 3567778888888776 899999999988865421 222221 267888888875 77889999999999887542
Q ss_pred hhhHHhhhcCCHHHHHHHHccCC--HHHHHHHHHHHHHhcCCc-ccHHHHHhCCcHHHHHHHhcCCC----c------HH
Q 048757 606 ANSIAIGREGGVAPLIALARSAV--VDVHETAAGALWNLAFNP-GNALCIVEGGGVQALIHLCSSSL----S------KM 672 (864)
Q Consensus 606 ~~~~~i~~~~~i~~Lv~lL~~~~--~~v~~~a~~aL~~L~~~~-~~~~~i~~~g~v~~L~~ll~~~~----~------~~ 672 (864)
...-.-.-...++.+++.+++++ ++++..+..+++.++... +.-.... ...+|.|.+.+.... . ..
T Consensus 671 ~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l-~~~l~~l~~~~~~~~~~~d~d~~~~~~~ 749 (861)
T 2bpt_A 671 EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL-NDIMALCVAAQNTKPENGTLEALDYQIK 749 (861)
T ss_dssp GGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHTCCCSSSSHHHHHHHHH
T ss_pred chhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 11101111345677788887764 889999999999998632 2211212 245677777776421 1 24
Q ss_pred HHHHHHHHHHHhh
Q 048757 673 ARFMAALALAYIV 685 (864)
Q Consensus 673 ~r~~aa~aL~~l~ 685 (864)
+|..+..++..+.
T Consensus 750 vr~~~l~~~~~i~ 762 (861)
T 2bpt_A 750 VLEAVLDAYVGIV 762 (861)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666554
No 72
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.22 E-value=4.5e-10 Score=137.49 Aligned_cols=353 Identities=11% Similarity=0.026 Sum_probs=219.3
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-c
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD-S 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~ 389 (864)
++.+...+++++..+|..|+.+++.++.+... ..... .-...++.++..++++++.++..|+++|++++.. +
T Consensus 368 l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~------~~~~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP------SQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH------HHHHH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHcCCCH------HHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 56677778889999999999999999865431 01111 1245788999999999999999999999998863 2
Q ss_pred hh--HHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC----------------CcHHHHHhhCcHHHHHHHHcc
Q 048757 390 KV--AKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGE----------------DHKGAIARAGGIKALVDLIFK 451 (864)
Q Consensus 390 ~~--~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~----------------~~~~~i~~~g~i~~L~~lL~~ 451 (864)
.. .... -...++.|+..+.+. +.++..++.+|.+++..- .....+ ...++.|...+.+
T Consensus 441 ~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~ 516 (876)
T 1qgr_A 441 EAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDR 516 (876)
T ss_dssp GGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTS
T ss_pred hhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhC
Confidence 10 0000 123467777777774 889999999999986421 111111 2366777777764
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHc----------cCc----hhHHHHHHHHHHHHhhcCC
Q 048757 452 WSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARS----------FMF----EGVQEQAARALANLVAHGD 517 (864)
Q Consensus 452 ~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~----------~~~----~~v~~~a~~aL~~L~~~~~ 517 (864)
....+..++..+..++..++........-.-...++.++..+.. .++ ++++..++.++..++..-.
T Consensus 517 ~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~ 596 (876)
T 1qgr_A 517 PDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQ 596 (876)
T ss_dssp CSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred cCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 22224567888888888887653311111122445666666553 111 4567788899999886411
Q ss_pred CCcccchhhhccChHHHHHHHhcCCC--HHHHHHHHHHHHHhcCChh--hHHHHHHCCChHHHHHHHHhcCCCCHHHHHH
Q 048757 518 SNSNNAAVGLETGALEALVQLTFSKH--EGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVALVRSCSSSSQGLQER 593 (864)
Q Consensus 518 ~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~ 593 (864)
...... .-...++.++.++++.. ..+++.++.++..++.... ....+ . ..++.+...+.+ ..++.++..
T Consensus 597 -~~~~~~--~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~-~-~~~~~l~~~l~~--~~~~~vr~~ 669 (876)
T 1qgr_A 597 -HQDALQ--ISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYM-E-AFKPFLGIGLKN--YAEYQVCLA 669 (876)
T ss_dssp -HHHHHT--THHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGH-H-HHHHHHHHHHHH--CTTHHHHHH
T ss_pred -hhhhhH--HHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHH-H-HHHHHHHHHHcC--cchHHHHHH
Confidence 011111 12356778888887764 3689999999998875311 11111 1 256788888886 238999999
Q ss_pred HHHHHHHhccC--chhhHHhhhcCCHHHHHHHHcc--CCHHHHHHHHHHHHHhcCC-cccHHHHHhCCcHHHHHHHhcCC
Q 048757 594 AAGALWGLSLS--EANSIAIGREGGVAPLIALARS--AVVDVHETAAGALWNLAFN-PGNALCIVEGGGVQALIHLCSSS 668 (864)
Q Consensus 594 A~~aL~~L~~~--~~~~~~i~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~~ 668 (864)
|+++++.++.. +..... -...++.+++.+.+ .+.+++..++.++++++.. .+.-... -...++.|.+.+...
T Consensus 670 a~~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~-l~~~~~~l~~~~~~~ 746 (876)
T 1qgr_A 670 AVGLVGDLCRALQSNIIPF--CDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKY-LEVVLNTLQQASQAQ 746 (876)
T ss_dssp HHHHHHHHHHHHGGGGHHH--HHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHH-HHHHHHHHHHHHhcc
Confidence 99999998754 222111 13567778888876 4578999999999999751 1111111 123456666666543
Q ss_pred C---cH-------HHHHHHHHHHHHh
Q 048757 669 L---SK-------MARFMAALALAYI 684 (864)
Q Consensus 669 ~---~~-------~~r~~aa~aL~~l 684 (864)
. ++ .+|..+..++..+
T Consensus 747 ~~~~d~~~~~~~~~~r~~~~~~~~~i 772 (876)
T 1qgr_A 747 VDKSDYDMVDYLNELRESCLEAYTGI 772 (876)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 2 12 5666666666544
No 73
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.21 E-value=1.1e-09 Score=123.11 Aligned_cols=312 Identities=13% Similarity=0.008 Sum_probs=196.8
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcCC--CCcHHHHHh
Q 048757 363 LLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARST--NRLVAEEVVGGLWNLSVG--EDHKGAIAR 438 (864)
Q Consensus 363 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~--~~~~~~i~~ 438 (864)
++..|.++++.+ ..++.+++.++....... .-...++.|++.+.++ ++.+++.++.+|..++.. ++.-....
T Consensus 95 ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~- 170 (462)
T 1ibr_B 95 VLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS- 170 (462)
T ss_dssp HHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-
T ss_pred HHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-
Confidence 444455544445 555555555543210000 0124578888989888 899999999999999752 22111111
Q ss_pred hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-c-hHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcC
Q 048757 439 AGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-C-SLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHG 516 (864)
Q Consensus 439 ~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~-~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~ 516 (864)
...++.++..+.+ ...+..++..|+.++.++...-+ . .......-.++.+...+.+ .+++++..++++|..++...
T Consensus 171 ~~ll~~l~~~l~~-~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 171 NEILTAIIQGMRK-EEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC-PDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp HHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHH
Confidence 2366778888864 11268999999999998764311 0 0000111124555555555 46899999999999998742
Q ss_pred CCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHH------------------HHH---CCChHH
Q 048757 517 DSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREA------------------IAA---AGGVEA 575 (864)
Q Consensus 517 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~------------------i~~---~~~i~~ 575 (864)
+..-......+.++.++..+++.+++++..|+..+..++........ +.+ ...++.
T Consensus 249 ---~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~ 325 (462)
T 1ibr_B 249 ---YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI 325 (462)
T ss_dssp ---GGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence 21111112226788888888899999999999998888654211100 010 123455
Q ss_pred HHHHHHhc----CCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc-c-H
Q 048757 576 LVALVRSC----SSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG-N-A 649 (864)
Q Consensus 576 Lv~lL~~~----~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~-~-~ 649 (864)
+++.+... ...++.+|..|+.+|..++..-. . .+. ...++.+...+++.+..++..|+.+|+.++.... . -
T Consensus 326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~ 402 (462)
T 1ibr_B 326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402 (462)
T ss_dssp HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT
T ss_pred HHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHH
Confidence 55555431 11345789999999998875421 1 111 2356677778888999999999999999997432 1 1
Q ss_pred HHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 650 LCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 650 ~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
... -...+|.|+..+.+++ +.+|..|+++|+++...-
T Consensus 403 ~~~-l~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 403 KPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELL 439 (462)
T ss_dssp CTT-TTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHG
T ss_pred HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhc
Confidence 111 1568999999999886 899999999999887643
No 74
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.19 E-value=2.1e-09 Score=131.21 Aligned_cols=456 Identities=16% Similarity=0.041 Sum_probs=276.8
Q ss_pred HHHHHHH-ccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC--CCHHHHHHHHHHHHHHhCC
Q 048757 312 TLLLSLM-ESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS--PPEGLQSEVAKAIANLSVD 388 (864)
Q Consensus 312 ~~L~~lL-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~~~~~a~~~L~~L~~~ 388 (864)
..++... .++|+++|..|...|..+...+ ..+++..|++.+.+ .++.+|..|+..|.+....
T Consensus 7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~---------------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~ 71 (861)
T 2bpt_A 7 AQLLENSILSPDQNIRLTSETQLKKLSNDN---------------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVS 71 (861)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHHHHHC---------------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcccCcCHHHHHHHHHHHHHHHhhC---------------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccC
Confidence 3455556 7889999999999998854211 14567778888865 4688999999999997542
Q ss_pred ch------hHHH----HH---hcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC--CCcHHHHHhhCcHHHHHHHHcccC
Q 048757 389 SK------VAKA----VS---ENGGIDILADLARSTNRLVAEEVVGGLWNLSVG--EDHKGAIARAGGIKALVDLIFKWS 453 (864)
Q Consensus 389 ~~------~~~~----i~---~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~~~ 453 (864)
.. .... +- ....-+.|++.+.++++.++..++.++..++.. +... -...++.|++.+.
T Consensus 72 ~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~----w~~ll~~L~~~l~--- 144 (861)
T 2bpt_A 72 KDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTG--- 144 (861)
T ss_dssp SSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTS---
T ss_pred cChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc----cHHHHHHHHHHHh---
Confidence 20 0000 10 111234677888888999999999999988652 2100 1235677777775
Q ss_pred CC-CHHHHHHHHHHHHHhcCCCc--ch-HHHHhcCcHHHHHHHHHccC-chhHHHHHHHHHHHHhhcCCCCcccchhhhc
Q 048757 454 SW-NDGVLERAAGALANLAADDK--CS-LEVARAGGVHALVMLARSFM-FEGVQEQAARALANLVAHGDSNSNNAAVGLE 528 (864)
Q Consensus 454 ~~-~~~v~~~a~~~L~~L~~~~~--~~-~~i~~~~~i~~Lv~ll~~~~-~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~ 528 (864)
++ ++.+++.++.++..++..-. .+ ..-.....++.+...+.+.. ++++|..++.++..+...-. .........
T Consensus 145 ~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~--~~~~~~~~~ 222 (861)
T 2bpt_A 145 AEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK--NNMEREGER 222 (861)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH--HHHTSHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH--HHccChhHH
Confidence 34 78999999999999986422 11 00011223556666666642 58899999999998754210 000000001
Q ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh-hh-HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCch
Q 048757 529 TGALEALVQLTFSKHEGVRQEAAGALWNLSFDD-RN-REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEA 606 (864)
Q Consensus 529 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~-~~-~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~ 606 (864)
...++.|...+.++++++|..++.+|..++... +. ...+ ....++.+...+.+ .+++++..|+..+..++....
T Consensus 223 ~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~---~~~~vr~~a~~~l~~l~~~~~ 298 (861)
T 2bpt_A 223 NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKS---PNDKVASMTVEFWSTICEEEI 298 (861)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHH
Confidence 235677778888899999999999999887542 11 2222 11345555556654 789999999999998875421
Q ss_pred hh---------------HHhh--hcCCHHHHHHHHccC-------CHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHH
Q 048757 607 NS---------------IAIG--REGGVAPLIALARSA-------VVDVHETAAGALWNLAFNPGNALCIVEGGGVQALI 662 (864)
Q Consensus 607 ~~---------------~~i~--~~~~i~~Lv~lL~~~-------~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~ 662 (864)
.. ..+. -...++.++..+... +..++..|..+|..++..-+. .+. ...++.+.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~-~~l~~~l~ 375 (861)
T 2bpt_A 299 DIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL-EPVLEFVE 375 (861)
T ss_dssp HHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHH
T ss_pred hhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH-HHHHHHHH
Confidence 10 0011 134567777777642 247889999999999852211 011 13455666
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhhcCCc-ccee--------eecccccCCCcccchHHHHHHHHHHHHhhcc-----cccc
Q 048757 663 HLCSSSLSKMARFMAALALAYIVDGRM-EDIA--------SIGSSLEGTSESENLDVIRRMALKHIEDFCA-----GRIA 728 (864)
Q Consensus 663 ~ll~~~~~~~~r~~aa~aL~~l~~~~~-~~~~--------~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~-----g~~~ 728 (864)
+.+.+++ ..+|..|+++++.++.+.. +.+. .+...+.|.+..++..++ .++..++.... ....
T Consensus 376 ~~l~~~~-~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~--~~l~~l~~~~~~~~~~~~~~ 452 (861)
T 2bpt_A 376 QNITADN-WRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTA--WCIGRIADSVAESIDPQQHL 452 (861)
T ss_dssp HHTTCSS-HHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHH--HHHHHHHHHHGGGSCTTTTH
T ss_pred HHcCCCC-hhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH--HHHHHHHHHhhhhcCCHHHH
Confidence 6777665 8899999999999998754 2221 233356777777776665 55555554421 1223
Q ss_pred hhhhhHHHHhccC-hhhHHHHhhccchhHHhccccccCcccccc-cccchhhHHHHHHHhcCC--cHHHHHHHHHHHHhh
Q 048757 729 LKHIEDFVRSFSD-PQAFATALASAVPKSLAQITEGARIPEAAH-LRCSGAEIGRFVSMLRNP--SSILKACAAVALLQF 804 (864)
Q Consensus 729 ~~~i~~l~~~~~~-~~~~~~a~~~~a~~~l~~~~~~~~~~~~~~-~~~~~~~i~~lv~~l~~~--~~~~~~~Aa~al~~~ 804 (864)
.+.++.++....+ +.++..+ +.++..+.+.... ..... ..+-...++.|++.+.+. ++.+|..|..++..+
T Consensus 453 ~~~l~~l~~~l~~~~~v~~~a--~~al~~l~~~~~~---~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 453 PGVVQACLIGLQDHPKVATNC--SWTIINLVEQLAE---ATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH--HHHHHHHHHHHSS---SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHH--HHHHHHHHHhccc---ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence 3445555544333 3333222 2333333322110 00010 122344678888999854 478999999999666
Q ss_pred cc
Q 048757 805 TM 806 (864)
Q Consensus 805 ~~ 806 (864)
..
T Consensus 528 ~~ 529 (861)
T 2bpt_A 528 VE 529 (861)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 75
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.18 E-value=2.6e-10 Score=123.81 Aligned_cols=205 Identities=12% Similarity=0.050 Sum_probs=141.5
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH----HHH--hCCc-ccceeeeecCCCCCHHHHHHHH---hC-CC
Q 048757 12 LDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA----MII--LQAR-RLREINVEFCRELTDAIFSAIV---AR-HE 80 (864)
Q Consensus 12 ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~----l~~--~~~~-~L~~L~l~~c~~l~d~~l~~l~---~~-~~ 80 (864)
++|+.+.+.. .+..+....++|++|++++|...+. +.. ..++ +|++|++++|. +++.+...+. .. ++
T Consensus 3 ~~ls~n~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSN-PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCC-HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCT
T ss_pred cccccccchH-HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCC
Confidence 3455554443 4555666677799999999974321 111 2677 99999999996 7765444443 33 49
Q ss_pred CcceEEeccCCCCCCCHHH---HHHHHhcC-cCcCeeeecccCCCcHHHHHHHHhc----CCCccEEeccCCCCCCHHHh
Q 048757 81 MLEILHFGLDVCDRISSDA---IKTVAYCC-PKLRRLWLSGVREVNGDAINALAKQ----CRQLVEVGFIDSGGVDEAAL 152 (864)
Q Consensus 81 ~L~~L~l~~~~c~~i~~~~---l~~l~~~~-~~L~~L~l~~~~~l~~~~l~~l~~~----~~~L~~L~l~~c~~i~~~~~ 152 (864)
+|++|++ ++|. +++.+ +......+ ++|++|++++|. +++.+...++.. +++|++|++++|. +++.+.
T Consensus 81 ~L~~L~L--s~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~ 155 (362)
T 3goz_A 81 NVTSLNL--SGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSS 155 (362)
T ss_dssp TCCEEEC--CSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCH
T ss_pred CccEEEC--cCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHH
Confidence 9999999 7664 55444 33434445 899999999998 777666555443 5799999999974 665333
Q ss_pred c-------CCC-CcCEEEEeCCCCCCHH---HHHHHHhcC-CCCcEEecCC---CCCCHHHHHHHhcC-CCCCcEEEccC
Q 048757 153 E-------NLS-SVRYLSIAGTRNLNWS---SAAIAWSKL-TSLVGLDTSR---TNINLSSVTRLLSS-SRNLKVLIALN 216 (864)
Q Consensus 153 ~-------~~~-~L~~L~l~~c~~~~~~---~l~~l~~~~-~~L~~L~l~~---~~~~~~~l~~~~~~-~~~L~~L~~~~ 216 (864)
. .++ +|++|++++|. +++. .+......+ ++|+.|++++ ++.+...+...+.. .++|+.|++++
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 2 454 99999999984 4443 333334456 5999999999 55556666666655 46999999999
Q ss_pred CCCccccc
Q 048757 217 CPVFEAEA 224 (864)
Q Consensus 217 c~~~~~~~ 224 (864)
|..-+...
T Consensus 235 N~l~~~~~ 242 (362)
T 3goz_A 235 NCLHGPSL 242 (362)
T ss_dssp SCCCCCCH
T ss_pred CCCCcHHH
Confidence 97655443
No 76
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.18 E-value=9.4e-10 Score=123.73 Aligned_cols=380 Identities=13% Similarity=0.034 Sum_probs=226.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccC--CHHHHHHHHHHHHHhcCCCC-cH----
Q 048757 361 RLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARST--NRLVAEEVVGGLWNLSVGED-HK---- 433 (864)
Q Consensus 361 ~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~~Ls~~~~-~~---- 433 (864)
..++..+.+++..+|..|-..|.++..+. ..+.+..|+.++.+. ++.+|..|+..|.++..... ..
T Consensus 4 ~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~-------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~ 76 (462)
T 1ibr_B 4 ITILEKTVSPDRLELEAAQKFLERAAVEN-------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY 76 (462)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhhC-------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHH
Confidence 34555566889999999999998855320 123456677777654 68899999999999854321 00
Q ss_pred -HHH------HhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccC-chhHHHHH
Q 048757 434 -GAI------ARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFM-FEGVQEQA 505 (864)
Q Consensus 434 -~~i------~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~-~~~v~~~a 505 (864)
... .....-..+++.+.+ .+..+ ..++.++..++....... .-.+.++.|+..+.+.+ ++.++..+
T Consensus 77 ~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~a 150 (462)
T 1ibr_B 77 QQRWLAIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKEST 150 (462)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHH
T ss_pred HhhhhcCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHH
Confidence 000 011123346666653 44456 778888888875421100 12467899999998852 68899999
Q ss_pred HHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC--CHHHHHHHHHHHHHhcCChh-hHH-HHHHCCChHHHHHHHH
Q 048757 506 ARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK--HEGVRQEAAGALWNLSFDDR-NRE-AIAAAGGVEALVALVR 581 (864)
Q Consensus 506 ~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~Ls~~~~-~~~-~i~~~~~i~~Lv~lL~ 581 (864)
+.+|..++.... +..... .-...++.++..+.+. ++.+|..|+.++.++...-+ ... .....-.++.+.+.+.
T Consensus 151 l~~l~~l~~~~~--~~~~~~-~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 227 (462)
T 1ibr_B 151 LEAIGYICQDID--PEQLQD-KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ 227 (462)
T ss_dssp HHHHHHHHHHSC--GGGTGG-GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC--chhhHh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence 999999997411 111111 1134778888889887 79999999999998754311 100 0001112445555554
Q ss_pred hcCCCCHHHHHHHHHHHHHhccC-ch-hhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHH--------
Q 048757 582 SCSSSSQGLQERAAGALWGLSLS-EA-NSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALC-------- 651 (864)
Q Consensus 582 ~~~~~~~~v~~~A~~aL~~L~~~-~~-~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~-------- 651 (864)
+ ++++++..++.+|..++.. ++ ....+ ....++.++..+++.++.++..|+..+..++........
T Consensus 228 ~---~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 303 (462)
T 1ibr_B 228 C---PDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQ 303 (462)
T ss_dssp C---SSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCS
T ss_pred C---CCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 4 7899999999999998854 21 11111 115677888888899999999999999988753210000
Q ss_pred ----------HHh---CCcHHHHHHHhcCC------CcHHHHHHHHHHHHHhhcCCccceeeecccccCCCcccchHHHH
Q 048757 652 ----------IVE---GGGVQALIHLCSSS------LSKMARFMAALALAYIVDGRMEDIASIGSSLEGTSESENLDVIR 712 (864)
Q Consensus 652 ----------i~~---~g~v~~L~~ll~~~------~~~~~r~~aa~aL~~l~~~~~~~~~~~~~ll~~~~~~v~~~~~~ 712 (864)
+.+ ...+|.+++.+... ++..+|..|+.+|..++....
T Consensus 304 ~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~----------------------- 360 (462)
T 1ibr_B 304 GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE----------------------- 360 (462)
T ss_dssp SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-----------------------
Confidence 110 22344455545321 112344455555544433221
Q ss_pred HHHHHHHHhhcccccchhhhhHHH-H--hccChhhHHHHhhccchhHHhcccccc---CcccccccccchhhHHHHHHHh
Q 048757 713 RMALKHIEDFCAGRIALKHIEDFV-R--SFSDPQAFATALASAVPKSLAQITEGA---RIPEAAHLRCSGAEIGRFVSML 786 (864)
Q Consensus 713 ~~al~~l~~~~~g~~~~~~i~~l~-~--~~~~~~~~~~a~~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~i~~lv~~l 786 (864)
......+-+++ . ...+..++.++. .+++.+.... .+.. .-...++.++.+|
T Consensus 361 -------------~~~~~~~~~~l~~~l~~~~~~~r~aal-----~~l~~l~~~~~~~~~~~-----~l~~~~~~l~~~l 417 (462)
T 1ibr_B 361 -------------DDIVPHVLPFIKEHIKNPDWRYRDAAV-----MAFGCILEGPEPSQLKP-----LVIQAMPTLIELM 417 (462)
T ss_dssp -------------TTHHHHHHHHHHHHTTCSSHHHHHHHH-----HHHHHTSSSSCTTTTCT-----TTTTHHHHHHHGG
T ss_pred -------------HHHHHHHHHHHHHHhcCCChHHHHHHH-----HHHHHHhcCCcHHHHHH-----HHHHHHHHHHHHh
Confidence 11111222222 2 223444444443 4555554321 1111 1134789999999
Q ss_pred cCCcHHHHHHHHHHHHhhcc
Q 048757 787 RNPSSILKACAAVALLQFTM 806 (864)
Q Consensus 787 ~~~~~~~~~~Aa~al~~~~~ 806 (864)
.++++.+|..|+++|.++..
T Consensus 418 ~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 418 KDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp GCSCHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988853
No 77
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.15 E-value=4.7e-09 Score=128.36 Aligned_cols=356 Identities=12% Similarity=-0.017 Sum_probs=233.5
Q ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCC--CHHHHHHHHHHHHHHh
Q 048757 311 ATLLLSLMESS--QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSP--PEGLQSEVAKAIANLS 386 (864)
Q Consensus 311 v~~L~~lL~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~--~~~~~~~a~~~L~~L~ 386 (864)
++.|++.+.++ ++.+|..+..+|+.++..-... . ..-.....++.+.+.+.++ +..++..+++++..+.
T Consensus 130 l~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~------~-~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 130 IPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE------Q-LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (876)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH------H-HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh------h-HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 58889999988 9999999999999987432100 0 0001134566777788776 6899999999999987
Q ss_pred CC-c-hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHH
Q 048757 387 VD-S-KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERA 463 (864)
Q Consensus 387 ~~-~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a 463 (864)
.. + ...........++.+...+.+.++.++..++.+|..+.. .++.-........++.+...+. +.++.++..+
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~v~~~a 279 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK---SDIDEVALQG 279 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT---CSSHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc---CCchHHHHHH
Confidence 52 1 111011111246667777778889999999999999875 2222112223356777777664 4678899999
Q ss_pred HHHHHHhcCCCc-------------------chHHH--HhcCcHHHHHHHHHcc------CchhHHHHHHHHHHHHhhcC
Q 048757 464 AGALANLAADDK-------------------CSLEV--ARAGGVHALVMLARSF------MFEGVQEQAARALANLVAHG 516 (864)
Q Consensus 464 ~~~L~~L~~~~~-------------------~~~~i--~~~~~i~~Lv~ll~~~------~~~~v~~~a~~aL~~L~~~~ 516 (864)
+..+..++.... ..... .-...++.++..+... ++..++..+..+|..++...
T Consensus 280 l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~ 359 (876)
T 1qgr_A 280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC 359 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHC
Confidence 988888865310 00000 0123456666766431 24578899999999998741
Q ss_pred CCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChh--hHHHHHHCCChHHHHHHHHhcCCCCHHHHHHH
Q 048757 517 DSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDR--NREAIAAAGGVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 517 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~--~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
. ..+. ...++.+...+.+++..+|..|+.++..++.... ...... ...++.++..+.+ +++.+|..|
T Consensus 360 ---~---~~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d---~~~~vr~~a 428 (876)
T 1qgr_A 360 ---E---DDIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD---PSVVVRDTA 428 (876)
T ss_dssp ---G---GGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC---SSHHHHHHH
T ss_pred ---c---HhhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC---CCHHHHHHH
Confidence 1 1111 2566777778888999999999999999987632 222222 2368888888886 889999999
Q ss_pred HHHHHHhccC-chhh-HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcc---------------cHHHHHhCCc
Q 048757 595 AGALWGLSLS-EANS-IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPG---------------NALCIVEGGG 657 (864)
Q Consensus 595 ~~aL~~L~~~-~~~~-~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~---------------~~~~i~~~g~ 657 (864)
+++|++++.. +... ..-.-...++.|+..+++. +.++..|+++|.+++.... .-.... ...
T Consensus 429 ~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~i 506 (876)
T 1qgr_A 429 AWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-ELI 506 (876)
T ss_dssp HHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-HHH
T ss_pred HHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-HHH
Confidence 9999999864 2110 0001124567788888774 8999999999999975211 000111 245
Q ss_pred HHHHHHHhcCCC--cHHHHHHHHHHHHHhhcCCc
Q 048757 658 VQALIHLCSSSL--SKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 658 v~~L~~ll~~~~--~~~~r~~aa~aL~~l~~~~~ 689 (864)
++.|...+...+ ...+|..+..+++.+.....
T Consensus 507 l~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 507 VQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp HHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 777888886542 34678888888888776554
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.07 E-value=2.6e-10 Score=123.06 Aligned_cols=196 Identities=15% Similarity=0.125 Sum_probs=133.4
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceE
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEIL 85 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L 85 (864)
.+.++.|+++++..... +.. ...+++|++|++++|...+......+++|++|++++|. +++... ...+++|+.|
T Consensus 131 l~~L~~L~l~~n~~~~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L 204 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSD-LSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYF 204 (347)
T ss_dssp CTTCCEEECTTCTTCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEE
T ss_pred CCceeEEECCCCCCccc-ccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-cccccc---ccCCCcccee
Confidence 45678889987743221 111 46788999999999865432223388999999999987 443221 4568999999
Q ss_pred EeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeC
Q 048757 86 HFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAG 165 (864)
Q Consensus 86 ~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~ 165 (864)
++ ++|. +++... ...+++|++|++++|. +++.. . ...+++|++|++++|.--+-..+..+++|++|++++
T Consensus 205 ~l--~~n~-l~~~~~---~~~~~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 274 (347)
T 4fmz_A 205 TA--YVNQ-ITDITP---VANMTRLNSLKIGNNK-ITDLS--P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGS 274 (347)
T ss_dssp EC--CSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred ec--ccCC-CCCCch---hhcCCcCCEEEccCCc-cCCCc--c-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccC
Confidence 99 6553 443221 4578999999999987 54422 1 456899999999998543334455889999999998
Q ss_pred CCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 166 TRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 166 c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
|. +++. . ....+++|+.|+++++..+... ...+..+++|+.|++.+|+..+.
T Consensus 275 n~-l~~~--~-~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 275 NQ-ISDI--S-VLNNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp SC-CCCC--G-GGGGCTTCSEEECCSSCCCGGG-HHHHHTCTTCSEEECCSSSCCCC
T ss_pred Cc-cCCC--h-hhcCCCCCCEEECcCCcCCCcC-hhHhhccccCCEEEccCCccccc
Confidence 84 4432 2 2357899999999985543222 23345678999999999985443
No 79
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.06 E-value=2.5e-10 Score=123.26 Aligned_cols=143 Identities=19% Similarity=0.135 Sum_probs=61.3
Q ss_pred CCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEe
Q 048757 8 LWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHF 87 (864)
Q Consensus 8 lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l 87 (864)
..+.|+++++.+.. +.. ...+++|++|++++|...+.-....+++|++|++++|. +++. .. ...+++|++|++
T Consensus 45 ~L~~L~l~~~~i~~--~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~-i~~~--~~-~~~l~~L~~L~l 117 (347)
T 4fmz_A 45 SITKLVVAGEKVAS--IQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK-ITDI--SA-LQNLTNLRELYL 117 (347)
T ss_dssp TCSEEECCSSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCC--GG-GTTCTTCSEEEC
T ss_pred cccEEEEeCCcccc--chh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCc-ccCc--hH-HcCCCcCCEEEC
Confidence 34555665544321 111 23456666666666542211112255666666666654 3331 11 234555666666
Q ss_pred ccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCC
Q 048757 88 GLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGT 166 (864)
Q Consensus 88 ~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c 166 (864)
++|. +++. .. ...+++|++|++++|..+++. .. ...+++|++|++++|.......+..+++|++|++++|
T Consensus 118 --~~n~-i~~~--~~-~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 118 --NEDN-ISDI--SP-LANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN 187 (347)
T ss_dssp --TTSC-CCCC--GG-GTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS
T ss_pred --cCCc-ccCc--hh-hccCCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC
Confidence 4332 2211 11 234555555555555323221 11 2234445555544443222222334444444444444
No 80
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.03 E-value=3.7e-08 Score=113.98 Aligned_cols=310 Identities=11% Similarity=0.060 Sum_probs=209.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh--cCCCHHHHHHHHHHHHHHhC-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA--RSPPEGLQSEVAKAIANLSV- 387 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL--~~~~~~~~~~a~~~L~~L~~- 387 (864)
+..+.+=++++++-+|-.|..+|+++... .+. ...++.+.++| .+.++-+|..|+-++.++..
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~~-------------e~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~ 178 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGSR-------------EMA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRT 178 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCCH-------------HHH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCCH-------------HHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 45677778889999999999999998521 122 35678888999 88999999999999999887
Q ss_pred CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc---C-C---------
Q 048757 388 DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW---S-S--------- 454 (864)
Q Consensus 388 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~---~-~--------- 454 (864)
+|+.. ...+.++.+.++|.+.++.|+..|+.+|..++.... ..+ ...++.+++.|.+. . .
T Consensus 179 ~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~--~~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~ 251 (621)
T 2vgl_A 179 SPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEF--KTSVSLAVSRLSRIVTSASTDLQDYTYYF 251 (621)
T ss_dssp CGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH--HHH--TTHHHHHHHHHHHHHHCCSSSCSTTEETT
T ss_pred Chhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh--HHH--HHHHHHHHHHHHHHHhCCCCCccchhhcC
Confidence 44422 124779999999999999999999999999875321 111 12344444444311 1 1
Q ss_pred -CCHHHHHHHHHHHHHhcCCCc--chHHHHhcCcHHHHHHHHHccC----------chhHHHHHHHHHHHHhhcCCCCcc
Q 048757 455 -WNDGVLERAAGALANLAADDK--CSLEVARAGGVHALVMLARSFM----------FEGVQEQAARALANLVAHGDSNSN 521 (864)
Q Consensus 455 -~~~~v~~~a~~~L~~L~~~~~--~~~~i~~~~~i~~Lv~ll~~~~----------~~~v~~~a~~aL~~L~~~~~~~~~ 521 (864)
.++-.+......|..++..++ ....+.+ .++.++..+.+.+ ...+...++.++..+.. .++
T Consensus 252 ~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~----~~~ 325 (621)
T 2vgl_A 252 VPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS----EPN 325 (621)
T ss_dssp EESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC----CHH
T ss_pred CCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC----cHH
Confidence 146677788888887775422 2222221 2333333322111 13677788888888753 222
Q ss_pred cchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHH-hcCCCCHHHHHHHHHHHHH
Q 048757 522 NAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVR-SCSSSSQGLQERAAGALWG 600 (864)
Q Consensus 522 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~~~~v~~~A~~aL~~ 600 (864)
.. ..++..|..++.+.++++|..|+..|..++...+....+ . .....++..+. + +++.++..|+.+|..
T Consensus 326 ~~-----~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~-~~~~~i~~~L~~d---~d~~Ir~~aL~lL~~ 395 (621)
T 2vgl_A 326 LL-----VRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K-THIETVINALKTE---RDVSVRQRAVDLLYA 395 (621)
T ss_dssp HH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H-TTHHHHHHHHTTC---CCHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H-HHHHHHHHHhccC---CCHhHHHHHHHHHHH
Confidence 21 146788899999999999999999999998764322222 2 35677888887 6 889999999999999
Q ss_pred hccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCC
Q 048757 601 LSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSS 668 (864)
Q Consensus 601 L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~ 668 (864)
++... +... .+..|...+.+.+.+.+..++.+++.++. +++... -.+..|++++...
T Consensus 396 l~~~~-Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~-----~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 396 MCDRS-NAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYT-----WYVDTILNLIRIA 453 (621)
T ss_dssp HCCHH-HHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTH-----HHHHHHHHHHHHH
T ss_pred HcChh-hHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH-----HHHHHHHHHHHhh
Confidence 88543 3222 34557788888899999999999999885 232221 2344666666543
No 81
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.00 E-value=1.3e-08 Score=129.11 Aligned_cols=416 Identities=14% Similarity=0.087 Sum_probs=253.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHH-HHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHh
Q 048757 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAK-AVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIAR 438 (864)
Q Consensus 360 i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~ 438 (864)
++.++.-+.++|+++|..|...|.+....+.... .-.....++.|++.+.+.++.+|..|+.+|.+++..-.. ..+
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~-- 84 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV-- 84 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH--
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH--
Confidence 5677888889999999999999988655331100 001123467788888899999999999999999763211 111
Q ss_pred hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcch------HHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHH
Q 048757 439 AGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCS------LEVARAGGVHALVMLARSFMFEGVQEQAARALANL 512 (864)
Q Consensus 439 ~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~------~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L 512 (864)
...++.++..+. ++++.+|..|+.+|..++..-... ..-.....+|.|+..+.+.+++.++..|+.+|..+
T Consensus 85 ~~i~~~Ll~~l~---d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 85 ETIVDTLCTNML---SDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHTT---CSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 124566666664 466788999999999887542211 11123456888888887434688999999999999
Q ss_pred hhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHH
Q 048757 513 VAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQE 592 (864)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~ 592 (864)
+.... ..... .-...++.|+..+.++++.+|..|+.+|..++...... + -...++.+++.+.+ ..++.++.
T Consensus 162 ~~~~~--~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~--~~~~~~r~ 232 (1230)
T 1u6g_C 162 LSRQG--GLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHLLSELSK--NDSMSTTR 232 (1230)
T ss_dssp HHHTC--SSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHH--TCSSCSCT
T ss_pred HHHhH--hHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhcc--CCchhHHH
Confidence 86311 11111 12456788888899999999999999999998753321 1 12358888888886 22346777
Q ss_pred HHHHHHHHhccCchhhHHhh--hcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC-cccHHHHHhCCcHHHHHHHhcC--
Q 048757 593 RAAGALWGLSLSEANSIAIG--REGGVAPLIALARSAVVDVHETAAGALWNLAFN-PGNALCIVEGGGVQALIHLCSS-- 667 (864)
Q Consensus 593 ~A~~aL~~L~~~~~~~~~i~--~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll~~-- 667 (864)
.++.+++.++..... .+. -...++.++..+++.++++|..+..++..++.. ++.-.... ...++.+++.+..
T Consensus 233 ~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~ 309 (1230)
T 1u6g_C 233 TYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDP 309 (1230)
T ss_dssp THHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-
T ss_pred HHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCC
Confidence 888888887754211 222 246788999999999999999999999988762 21111111 1233444433321
Q ss_pred ----------------------------------CCcHHHHHHHHHHHHHhhcCCcccee--------eecccccCCCcc
Q 048757 668 ----------------------------------SLSKMARFMAALALAYIVDGRMEDIA--------SIGSSLEGTSES 705 (864)
Q Consensus 668 ----------------------------------~~~~~~r~~aa~aL~~l~~~~~~~~~--------~~~~ll~~~~~~ 705 (864)
+....+|..|+.++..++...++.+. .+...+.+.+..
T Consensus 310 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~ 389 (1230)
T 1u6g_C 310 NYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREEN 389 (1230)
T ss_dssp -----------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSH
T ss_pred CCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchH
Confidence 01134688899999988875443222 122245677777
Q ss_pred cchHHHHHHHHHHHHhhc-c---------------c------ccchhhhhHHHHhc--cChhhHHHHhhccchhHHhccc
Q 048757 706 ENLDVIRRMALKHIEDFC-A---------------G------RIALKHIEDFVRSF--SDPQAFATALASAVPKSLAQIT 761 (864)
Q Consensus 706 v~~~~~~~~al~~l~~~~-~---------------g------~~~~~~i~~l~~~~--~~~~~~~~a~~~~a~~~l~~~~ 761 (864)
++..++ .++..+.... . | ...-..++.+.+.. .++.++.++. . +++...
T Consensus 390 Vr~~a~--~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~--~---~L~~l~ 462 (1230)
T 1u6g_C 390 VKADVF--HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF--N---MLTELV 462 (1230)
T ss_dssp HHHHHH--HHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH--H---HHHHHH
T ss_pred HHHHHH--HHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH--H---HHHHHH
Confidence 776665 3333332211 0 1 00111122222222 2223332222 2 333333
Q ss_pred c--ccCcccccccccchhhHHHHHHHhcCCcH--HHHHHHHHHHHhhc
Q 048757 762 E--GARIPEAAHLRCSGAEIGRFVSMLRNPSS--ILKACAAVALLQFT 805 (864)
Q Consensus 762 ~--~~~~~~~~~~~~~~~~i~~lv~~l~~~~~--~~~~~Aa~al~~~~ 805 (864)
. +..+.. .-...++.+...|+++++ .+|..|+.++..+.
T Consensus 463 ~~~~~~l~~-----~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 463 NVLPGALTQ-----HIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp HHSTTTTGG-----GHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHchhhhHH-----HHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHH
Confidence 2 111111 124467899999998875 89999998886664
No 82
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.98 E-value=6.2e-08 Score=112.13 Aligned_cols=440 Identities=14% Similarity=0.067 Sum_probs=267.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSK 390 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~ 390 (864)
....++++.+++...++-+..++..++..+.+. + .=++..+.+=|.++++-++..|+++|+++.. ++
T Consensus 76 ~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~----------~--~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e 142 (621)
T 2vgl_A 76 HMEAVNLLSSNRYTEKQIGYLFISVLVNSNSEL----------I--RLINNAIKNDLASRNPTFMGLALHCIANVGS-RE 142 (621)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHH----------H--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHH----------H--HHHHHHHHHhcCCCCHHHHHHHHHHhhccCC-HH
Confidence 466788999999999999999999988555321 1 1135566677789999999999999999854 33
Q ss_pred hHHHHHhcCcHHHHHHHH--ccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 391 VAKAVSENGGIDILADLA--RSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 391 ~~~~i~~~g~i~~Lv~lL--~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
... ..++.+.+++ .+.++.|+..|+.++.++.. +++. +...+.++.+.++|. +.++.|+..|+.++
T Consensus 143 ~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL~---d~d~~V~~~a~~~l 211 (621)
T 2vgl_A 143 MAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLLN---DQHLGVVTAATSLI 211 (621)
T ss_dssp HHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHTT---CSCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHhC---CCCccHHHHHHHHH
Confidence 222 3456788888 88999999999999999865 3322 112468899999995 57889999999999
Q ss_pred HHhcCCCcchHHHHhcCcHHHHHHHHH----cc-C-----------chhHHHHHHHHHHHHhhcCCCCcccchhhhccCh
Q 048757 468 ANLAADDKCSLEVARAGGVHALVMLAR----SF-M-----------FEGVQEQAARALANLVAHGDSNSNNAAVGLETGA 531 (864)
Q Consensus 468 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~----~~-~-----------~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~ 531 (864)
..++..+.. .+ ...++.+++.+. .+ . ++-.|...+..|..++... +++.+..+. ..
T Consensus 212 ~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~--d~~~~~~l~--~~ 283 (621)
T 2vgl_A 212 TTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPE--DPAVRGRLT--EC 283 (621)
T ss_dssp HHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCS--SHHHHHHHH--HH
T ss_pred HHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCC--CHHHHHHHH--HH
Confidence 998765431 11 123455554443 21 1 4667777777777776421 122222222 13
Q ss_pred HHHHHHHhc---------CCCH--HHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 048757 532 LEALVQLTF---------SKHE--GVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWG 600 (864)
Q Consensus 532 i~~L~~lL~---------~~~~--~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~ 600 (864)
++.++..+. +.+. .+..+++.++..+..+++... .++..|..++.+ .++++|..|+.+|..
T Consensus 284 L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~---~~~niry~aL~~l~~ 355 (621)
T 2vgl_A 284 LETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQH---RETNLRYLALESMCT 355 (621)
T ss_dssp HHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcC---CCcchHHHHHHHHHH
Confidence 333443321 1233 788899999999975444332 256678888875 799999999999999
Q ss_pred hccCchhhHHhhhcCCHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHH
Q 048757 601 LSLSEANSIAIGREGGVAPLIALAR-SAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAAL 679 (864)
Q Consensus 601 L~~~~~~~~~i~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~ 679 (864)
++........+ ......++.+|+ +++..++..|+..|..++. +.|-.. .+..|.+.+.+.+ ...+..++.
T Consensus 356 l~~~~~~~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~-~~Nv~~-----Iv~eL~~yl~~~d-~~~~~~~v~ 426 (621)
T 2vgl_A 356 LASSEFSHEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCD-RSNAQQ-----IVAEMLSYLETAD-YSIREEIVL 426 (621)
T ss_dssp HTTCTTTHHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC-HHHHHH-----HHHHHHHHHHHCC-HHHHHHHHH
T ss_pred HHhccCcHHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC-hhhHHH-----HHHHHHHHHHhcC-HHHHHHHHH
Confidence 98763222223 235677888898 9999999999999999984 334333 3446777777665 778888888
Q ss_pred HHHHhhcCCccce----eeecccccCCCcccchHHHHHHHHHHHHhhcccccchhhhhHHHHhccChhhHHHHhhccchh
Q 048757 680 ALAYIVDGRMEDI----ASIGSSLEGTSESENLDVIRRMALKHIEDFCAGRIALKHIEDFVRSFSDPQAFATALASAVPK 755 (864)
Q Consensus 680 aL~~l~~~~~~~~----~~~~~ll~~~~~~v~~~~~~~~al~~l~~~~~g~~~~~~i~~l~~~~~~~~~~~~a~~~~a~~ 755 (864)
+++.++..-+... ..+..++......+....+ ..+..+....+ .....++..+.....++...+. ..-.+.+
T Consensus 427 ~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~--~~l~~ii~~~~-~~~~~~~~~l~~~l~~~~~~~~-li~~~~w 502 (621)
T 2vgl_A 427 KVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVW--YRVIQIVINRD-DVQGYAAKTVFEALQAPACHEN-LVKVGGY 502 (621)
T ss_dssp HHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHH--HHHHHHHGGGC-SCHHHHHHHHHHHHTSSSCCHH-HHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHH--HHHHHHHhCCh-hHHHHHHHHHHHHHcCccchHH-HHHHHHH
Confidence 8887765322111 1222233332222332322 12222222211 1122233333333333322111 1112234
Q ss_pred HHhccccccCcccccccccchhhHHHHHHHhcCCcHHHHHHHHHHHHhhcc
Q 048757 756 SLAQITEGARIPEAAHLRCSGAEIGRFVSMLRNPSSILKACAAVALLQFTM 806 (864)
Q Consensus 756 ~l~~~~~~~~~~~~~~~~~~~~~i~~lv~~l~~~~~~~~~~Aa~al~~~~~ 806 (864)
-+|+-.. .+.+...+ .-.+.+..|..-....++.+|..+..|+..|..
T Consensus 503 ilGEy~~--~~~~~~~~-~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 503 ILGEFGN--LIAGDPRS-SPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp HHHHHTH--HHHSSTTS-CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HhcchHH--HhcccCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 5665421 11111100 001234556655667888889888888866643
No 83
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.95 E-value=1.7e-09 Score=115.87 Aligned_cols=198 Identities=12% Similarity=0.142 Sum_probs=128.7
Q ss_pred CCCeecCCCCCCC----HHHHHHH---HhcCCCCcEEEecCCCC------------chHHHHhCCcccceeeeecCCCCC
Q 048757 8 LWSSLDLRPYKFD----TSAAESL---SSRCTNLQALWFRGALS------------ADAMIILQARRLREINVEFCRELT 68 (864)
Q Consensus 8 lw~~ldL~~~~~~----~~~l~~i---~~~~~~L~~L~l~~~~~------------~~~l~~~~~~~L~~L~l~~c~~l~ 68 (864)
..+.|.+..+.++ .+.+..+ ..++++|+.|.+.+... +..+. ..+|+|++|++++|..+.
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll-~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL-DAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH-HTCTTCCEEEEECCBTCB
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHH-hcCCCCcEEEEeCCCCce
Confidence 3445555544444 1345554 44789999999865321 12232 278999999999885332
Q ss_pred HHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHh-cCcCcCeeeecccCC--CcHH---HHHHHH--hcCCCccEEe
Q 048757 69 DAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAY-CCPKLRRLWLSGVRE--VNGD---AINALA--KQCRQLVEVG 140 (864)
Q Consensus 69 d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~-~~~~L~~L~l~~~~~--l~~~---~l~~l~--~~~~~L~~L~ 140 (864)
. ..+ .+++|++|+| .. ..++++++..++. .+|+|++|+|+.+.. ..+. .+..+. ..+|+|++|+
T Consensus 187 l---~~~--~~~~L~~L~L--~~-~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~ 258 (362)
T 2ra8_A 187 I---GKK--PRPNLKSLEI--IS-GGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258 (362)
T ss_dssp C---CSC--BCTTCSEEEE--EC-SBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEE
T ss_pred e---ccc--cCCCCcEEEE--ec-CCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEe
Confidence 1 111 3789999999 54 4689999988874 689999999864211 1111 122222 3589999999
Q ss_pred ccCCCCCCHHHhc------CCCCcCEEEEeCCCCCCHHHHHHHH---hcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcE
Q 048757 141 FIDSGGVDEAALE------NLSSVRYLSIAGTRNLNWSSAAIAW---SKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKV 211 (864)
Q Consensus 141 l~~c~~i~~~~~~------~~~~L~~L~l~~c~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 211 (864)
+.+|. +++.+.. .+++|++|+|+.+ .+++.+...+. .++++|+.|+++++.++...+..+-..+ ...
T Consensus 259 L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~ 334 (362)
T 2ra8_A 259 IVDAE-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMK 334 (362)
T ss_dssp EESCT-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSE
T ss_pred CCCCC-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCE
Confidence 99975 5554322 5789999999765 69998877765 4579999999998666665544433211 244
Q ss_pred EEccCCC
Q 048757 212 LIALNCP 218 (864)
Q Consensus 212 L~~~~c~ 218 (864)
+++++..
T Consensus 335 ~~~~~~~ 341 (362)
T 2ra8_A 335 IDVSDSQ 341 (362)
T ss_dssp EECCSBC
T ss_pred EEecCCc
Confidence 6666554
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.94 E-value=6.8e-10 Score=117.35 Aligned_cols=191 Identities=17% Similarity=0.161 Sum_probs=126.0
Q ss_pred CCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEe
Q 048757 8 LWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHF 87 (864)
Q Consensus 8 lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l 87 (864)
..+.|+++++.+.. +.. ...+++|++|++++|...+......+++|++|++++|. +++. .. ...+++|++|++
T Consensus 42 ~L~~L~l~~~~i~~--l~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~L~l 114 (308)
T 1h6u_A 42 GITTLSAFGTGVTT--IEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNP-LKNV--SA-IAGLQSIKTLDL 114 (308)
T ss_dssp TCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCC-CSCC--GG-GTTCTTCCEEEC
T ss_pred CcCEEEeeCCCccC--chh-hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCc-CCCc--hh-hcCCCCCCEEEC
Confidence 46778887765543 122 35688899999988854322113378889999998886 5442 22 356788999999
Q ss_pred ccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCC
Q 048757 88 GLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTR 167 (864)
Q Consensus 88 ~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~ 167 (864)
++|. +++ +.. ...+++|++|++++|. +++- .. ...+++|++|++++|.--+-..+..+++|++|++++|.
T Consensus 115 --~~n~-l~~--~~~-l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 115 --TSTQ-ITD--VTP-LAGLSNLQVLYLDLNQ-ITNI--SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184 (308)
T ss_dssp --TTSC-CCC--CGG-GTTCTTCCEEECCSSC-CCCC--GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred --CCCC-CCC--chh-hcCCCCCCEEECCCCc-cCcC--cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCc
Confidence 6653 443 222 3568889999998886 5432 12 44688899999988753332335588899999998874
Q ss_pred CCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 168 NLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 168 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
+++.. . ...+++|+.|+++++..+... -+..+++|+.|++.+|+....
T Consensus 185 -l~~~~--~-l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 185 -ISDIS--P-LASLPNLIEVHLKNNQISDVS---PLANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp -CCCCG--G-GGGCTTCCEEECTTSCCCBCG---GGTTCTTCCEEEEEEEEEECC
T ss_pred -cCcCh--h-hcCCCCCCEEEccCCccCccc---cccCCCCCCEEEccCCeeecC
Confidence 33221 1 357889999999884332111 156778899999988886443
No 85
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.93 E-value=3.1e-10 Score=111.35 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=44.0
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLT 182 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~ 182 (864)
.+++|++|++++|. +++.....+. .+++|++|++++|. +++ ..+..+++|++|++++|..+++.. . ...++
T Consensus 86 ~l~~L~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~-l~~l~ 159 (197)
T 4ezg_A 86 GLSNLERLRIMGKD-VTSDKIPNLS-GLTSLTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITDIM--P-LKTLP 159 (197)
T ss_dssp TCTTCCEEEEECTT-CBGGGSCCCT-TCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCCCG--G-GGGCS
T ss_pred cCCCCCEEEeECCc-cCcccChhhc-CCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccccH--h-hcCCC
Confidence 34555555555544 4332222222 24555555555543 222 222355555555555554333221 1 23455
Q ss_pred CCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCC
Q 048757 183 SLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCP 218 (864)
Q Consensus 183 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~ 218 (864)
+|+.|+++++..+.- . .+..+++|+.|++.+++
T Consensus 160 ~L~~L~l~~n~i~~~--~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 160 ELKSLNIQFDGVHDY--R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp SCCEEECTTBCCCCC--T-TGGGCSSCCEEEECBC-
T ss_pred CCCEEECCCCCCcCh--H-HhccCCCCCEEEeeCcc
Confidence 555555555222110 0 23344555555555443
No 86
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.93 E-value=4.9e-11 Score=127.33 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=8.2
Q ss_pred CCCCCcEEEccCCCCcc
Q 048757 205 SSRNLKVLIALNCPVFE 221 (864)
Q Consensus 205 ~~~~L~~L~~~~c~~~~ 221 (864)
.+++|+.|++++|+...
T Consensus 275 ~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp GCTTCCEEECTTCTTCC
T ss_pred cCCCCCEEeCCCCCchh
Confidence 34445555555554444
No 87
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.90 E-value=2e-06 Score=100.30 Aligned_cols=304 Identities=15% Similarity=0.096 Sum_probs=211.9
Q ss_pred HHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc---CCCHHHHHHHHHHHHHHhCCchhH
Q 048757 316 SLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR---SPPEGLQSEVAKAIANLSVDSKVA 392 (864)
Q Consensus 316 ~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~---~~~~~~~~~a~~~L~~L~~~~~~~ 392 (864)
.++....+..+..|+..||.+-..+. .+++..|-..|. ++++.++..|+-+|+-+......
T Consensus 365 ~Wl~k~~~~~k~sA~aSLGlIh~g~~---------------~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~- 428 (963)
T 4ady_A 365 PWLGKAQNWAKFTATASLGVIHKGNL---------------LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR- 428 (963)
T ss_dssp HHHHHCCTHHHHHHHHHHHHHTSSCT---------------TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-
T ss_pred hhhhccchHHHHHHHHHhhhhccCch---------------HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-
Confidence 35544455567777777777655442 234666666665 56788999999999987664321
Q ss_pred HHHHhcCcHHHHHHHHccCC--------HHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 393 KAVSENGGIDILADLARSTN--------RLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 393 ~~i~~~g~i~~Lv~lL~~~~--------~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
.++..|...+.+.+ +.++..|+..|+-+.....+ ..+++.|..++.+ .+..+++.|+
T Consensus 429 ------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~------eev~e~L~~~L~d---d~~~~~~~Aa 493 (963)
T 4ady_A 429 ------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN------IEVYEALKEVLYN---DSATSGEAAA 493 (963)
T ss_dssp ------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC------HHHHHHHHHHHHT---CCHHHHHHHH
T ss_pred ------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhc---CCHHHHHHHH
Confidence 14667777776554 67888898899987543221 1256778888863 4556677788
Q ss_pred HHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhc-CCC
Q 048757 465 GALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTF-SKH 543 (864)
Q Consensus 465 ~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~ 543 (864)
.+|+-+-....+. ..+..|+..+.+..++.++..++.+|+.+... +...++.+++.|. +.+
T Consensus 494 lALGli~vGTgn~------~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g------------~~e~~~~li~~L~~~~d 555 (963)
T 4ady_A 494 LGMGLCMLGTGKP------EAIHDMFTYSQETQHGNITRGLAVGLALINYG------------RQELADDLITKMLASDE 555 (963)
T ss_dssp HHHHHHHTTCCCH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT------------CGGGGHHHHHHHHHCSC
T ss_pred HHHhhhhcccCCH------HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC------------ChHHHHHHHHHHHhCCC
Confidence 7877664333222 23566777766656788999999999988753 2356788888765 578
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHH
Q 048757 544 EGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIAL 623 (864)
Q Consensus 544 ~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~l 623 (864)
+-+|..++.++..-.....+. .+|+.|+..+.+ ..++.+|..|+.+|+.+...+ ...++.++.+
T Consensus 556 p~vRygaa~alglAyaGTGn~------~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~--------~e~v~rlv~~ 619 (963)
T 4ady_A 556 SLLRYGGAFTIALAYAGTGNN------SAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRD--------YTTVPRIVQL 619 (963)
T ss_dssp HHHHHHHHHHHHHHTTTSCCH------HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSS--------CSSHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCC--------HHHHHHHHHH
Confidence 889998888876432222111 246667776665 468899999999999765442 2356777764
Q ss_pred -HccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCccc
Q 048757 624 -ARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMED 691 (864)
Q Consensus 624 -L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~ 691 (864)
+++.++.+|..|+.+|+.++...++. .+++.|..+..+++ +.||..|+.+|+.+..+..+.
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~------~aid~L~~L~~D~d-~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQ------SAIDVLDPLTKDPV-DFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCH------HHHHHHHHHHTCSS-HHHHHHHHHHHHHHSTTCCTT
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcH------HHHHHHHHHccCCC-HHHHHHHHHHHHHHhcCCccc
Confidence 46789999999999999998755533 45678888888886 889999999999999887754
No 88
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.90 E-value=2e-09 Score=121.10 Aligned_cols=189 Identities=20% Similarity=0.150 Sum_probs=94.1
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
+.++.||++++.+..- . ....+++|++|++++|...+......+++|++|++++|. +++. .. ...+++|++|+
T Consensus 177 ~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~ 249 (466)
T 1o6v_A 177 TTLERLDISSNKVSDI--S-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDI--GT-LASLTNLTDLD 249 (466)
T ss_dssp TTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEE
T ss_pred CCCCEEECcCCcCCCC--h-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCC-cccc--hh-hhcCCCCCEEE
Confidence 4466677776654421 1 134567777777777653322112256677777777665 3332 11 23466667776
Q ss_pred eccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCC
Q 048757 87 FGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGT 166 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c 166 (864)
+ ++|. ++.. .. ...+++|++|++++|. +++. .. ...+++|++|++++|..-+-..+..+++|++|++++|
T Consensus 250 l--~~n~-l~~~--~~-~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 250 L--ANNQ-ISNL--AP-LSGLTKLTELKLGANQ-ISNI--SP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp C--CSSC-CCCC--GG-GTTCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred C--CCCc-cccc--hh-hhcCCCCCEEECCCCc-cCcc--cc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC
Confidence 6 4443 2211 11 2346666666666664 3321 11 2345666666666654322223345666666666665
Q ss_pred CCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 167 RNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 167 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
. +++... ...+++|+.|+++++..+.. ..+..+++|+.|++.+|+.
T Consensus 320 ~-l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 320 N-ISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp C-CSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCC
T ss_pred c-CCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCcc
Confidence 3 222111 23456666666665222111 1344455566666655543
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.90 E-value=2.2e-10 Score=121.45 Aligned_cols=130 Identities=14% Similarity=0.164 Sum_probs=54.9
Q ss_pred cCCCCcEEEecCCCCchH----HHHhCCcccceeeeecCCCCCHH--HHHHHHh-CCCCcceEEeccCCCCCCCHHHHHH
Q 048757 30 RCTNLQALWFRGALSADA----MIILQARRLREINVEFCRELTDA--IFSAIVA-RHEMLEILHFGLDVCDRISSDAIKT 102 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~----l~~~~~~~L~~L~l~~c~~l~d~--~l~~l~~-~~~~L~~L~l~~~~c~~i~~~~l~~ 102 (864)
.+++|++|++++|..... +....+++|++|+++++. ++.. .+..+.. .+++|++|++ +++. ++......
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L--~~N~-l~~~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSI--AQAH-SLNFSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEE--ESCS-CCCCCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEe--eCCC-CccchHHH
Confidence 355666666666543221 111245566666666654 3322 1111110 1255666666 3332 22111011
Q ss_pred HHhcCcCcCeeeecccCCCcHH-HH-HHH-HhcCCCccEEeccCCCCCCH-HHh-----cCCCCcCEEEEeCC
Q 048757 103 VAYCCPKLRRLWLSGVREVNGD-AI-NAL-AKQCRQLVEVGFIDSGGVDE-AAL-----ENLSSVRYLSIAGT 166 (864)
Q Consensus 103 l~~~~~~L~~L~l~~~~~l~~~-~l-~~l-~~~~~~L~~L~l~~c~~i~~-~~~-----~~~~~L~~L~l~~c 166 (864)
...+++|++|+++++. ++.. .+ ..+ ...+++|++|++++|. ++. ..+ .++++|++|+++++
T Consensus 169 -~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 169 -VRVFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp -CCCCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred -hccCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC
Confidence 1235555555555554 2221 11 111 1345555555555543 331 111 14455555555554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.89 E-value=1.6e-10 Score=122.50 Aligned_cols=201 Identities=12% Similarity=0.076 Sum_probs=113.1
Q ss_pred CCCeecCCCCCCCHHHHHHHHh--cCCCCcEEEecCCCCchH----HHHhCCcccceeeeecCCCCCHH----HHHHHHh
Q 048757 8 LWSSLDLRPYKFDTSAAESLSS--RCTNLQALWFRGALSADA----MIILQARRLREINVEFCRELTDA----IFSAIVA 77 (864)
Q Consensus 8 lw~~ldL~~~~~~~~~l~~i~~--~~~~L~~L~l~~~~~~~~----l~~~~~~~L~~L~l~~c~~l~d~----~l~~l~~ 77 (864)
.++.+++.+..+....+..+.. .+++|++|++++|..... +....+++|++|+++++. ++.. ....+ .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~-~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ-W 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT-T
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh-h
Confidence 4778888888777665554433 346799999998864422 110367888888888876 4431 11222 2
Q ss_pred CCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHH--HhcCCCccEEeccCCCCCCH-HH---
Q 048757 78 RHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINAL--AKQCRQLVEVGFIDSGGVDE-AA--- 151 (864)
Q Consensus 78 ~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l--~~~~~~L~~L~l~~c~~i~~-~~--- 151 (864)
.+++|++|++ ++|. ++.... .....+++|++|+++++.-.++.++..- ...+|+|++|++++|. ++. ..
T Consensus 143 ~~~~L~~L~L--s~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSI--AQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCA 217 (310)
T ss_dssp BCSCCCEEEE--ECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHH
T ss_pred hccCCCEEEe--eCCC-cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHH
Confidence 5778888888 5543 322111 1123567778888877763333333211 1356777777777764 432 22
Q ss_pred --hcCCCCcCEEEEeCCCCCCHHHHHHHHhcC---CCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 152 --LENLSSVRYLSIAGTRNLNWSSAAIAWSKL---TSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 152 --~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~---~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
+.++++|++|+++++. +++.....+ ..+ ++|+.|+++++..+ .+...+ .++|+.|++++|..-.
T Consensus 218 ~l~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~~~~~~~L~~L~Ls~N~l~--~lp~~~--~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHNS-LRATVNPSA-PRCMWSSALNSLNLSFAGLE--QVPKGL--PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp HHHHHTCCCSSEECTTSC-CCCCCCSCC-SSCCCCTTCCCEECCSSCCC--SCCSCC--CSCCSCEECCSCCCCS
T ss_pred HHHhcCCCCCEEECCCCC-CCccchhhH-HhccCcCcCCEEECCCCCCC--chhhhh--cCCCCEEECCCCcCCC
Confidence 2366777777777764 322110111 123 57777777773333 111111 2577777777776543
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.89 E-value=3.2e-10 Score=111.27 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=110.8
Q ss_pred cCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 30 RCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
.+++|++|+++++...+--....+++|++|++++|. +++.. ....+++|++|++ ++| .+++.....+ ..+++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~-~~~~~---~l~~l~~L~~L~l--~~n-~l~~~~~~~l-~~l~~ 113 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIH-ATNYN---PISGLSNLERLRI--MGK-DVTSDKIPNL-SGLTS 113 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC-CSCCG---GGTTCTTCCEEEE--ECT-TCBGGGSCCC-TTCTT
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCC-CCcch---hhhcCCCCCEEEe--ECC-ccCcccChhh-cCCCC
Confidence 467899999999864421112378999999999994 55432 2356899999999 665 4665444444 36899
Q ss_pred cCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH-HhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEe
Q 048757 110 LRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA-ALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLD 188 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~-~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~ 188 (864)
|++|++++|. +++.....+. .+++|++|++++|..+++. .+..+++|++|++++|. +++. . ....+++|+.|+
T Consensus 114 L~~L~Ls~n~-i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~--~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 114 LTLLDISHSA-HDDSILTKIN-TLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDY--R-GIEDFPKLNQLY 187 (197)
T ss_dssp CCEEECCSSB-CBGGGHHHHT-TCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCC--T-TGGGCSSCCEEE
T ss_pred CCEEEecCCc-cCcHhHHHHh-hCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcCh--H-HhccCCCCCEEE
Confidence 9999999998 8776565554 5999999999998745543 45599999999999985 4442 2 235799999999
Q ss_pred cCCCCCC
Q 048757 189 TSRTNIN 195 (864)
Q Consensus 189 l~~~~~~ 195 (864)
++++.++
T Consensus 188 l~~N~i~ 194 (197)
T 4ezg_A 188 AFSQTIG 194 (197)
T ss_dssp ECBC---
T ss_pred eeCcccC
Confidence 9986543
No 92
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.86 E-value=3.2e-09 Score=119.46 Aligned_cols=193 Identities=14% Similarity=0.081 Sum_probs=138.9
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceE
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEIL 85 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L 85 (864)
.+.++.|+++++.+....- ...+++|+.|++++|...+.-....+++|++|++++|. +++... ...+++|++|
T Consensus 198 l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L 270 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLAP---LSGLTKLTEL 270 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCSEE
T ss_pred CCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccchh---hhcCCCCCEE
Confidence 4568889999887643211 45689999999999964432111278999999999987 443221 4678999999
Q ss_pred EeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeC
Q 048757 86 HFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAG 165 (864)
Q Consensus 86 ~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~ 165 (864)
++ ++|. ++.. .. ...+++|++|++++|. +++- .. ...+++|++|++++|...+...+..+++|++|++++
T Consensus 271 ~l--~~n~-l~~~--~~-~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 271 KL--GANQ-ISNI--SP-LAGLTALTNLELNENQ-LEDI--SP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYN 340 (466)
T ss_dssp EC--CSSC-CCCC--GG-GTTCTTCSEEECCSSC-CSCC--GG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCS
T ss_pred EC--CCCc-cCcc--cc-ccCCCccCeEEcCCCc-ccCc--hh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCC
Confidence 99 6663 4432 12 4578999999999987 5542 22 456999999999998654444566999999999999
Q ss_pred CCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 166 TRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 166 c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
|. +++. .. ...+++|+.|+++++..+.... +..+++|+.|++.+|+....
T Consensus 341 n~-l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 341 NK-VSDV--SS-LANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SC-CCCC--GG-GTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCCEEEECC
T ss_pred Cc-cCCc--hh-hccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccCCcccCC
Confidence 85 4432 22 3579999999999944322111 56789999999999987663
No 93
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.86 E-value=5.8e-07 Score=104.83 Aligned_cols=316 Identities=15% Similarity=0.099 Sum_probs=218.8
Q ss_pred hcHHHHHHHHc---cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCC--------HHHHHH
Q 048757 309 QGATLLLSLME---SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPP--------EGLQSE 377 (864)
Q Consensus 309 ~gv~~L~~lL~---~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~--------~~~~~~ 377 (864)
+|+..|-..|. +.++.++.-|+.+||-+..+.. . .++..|...|.+++ +.++..
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----------~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~g 456 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----------R-----DTTDYLKNIIVENSGTSGDEDVDVLLHG 456 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----------H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----------H-----HHHHHHHHHHcCccccccccccHHHHHH
Confidence 44566666665 5678999999999999865442 1 14667777776554 667878
Q ss_pred HHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCH
Q 048757 378 VAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWND 457 (864)
Q Consensus 378 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~ 457 (864)
|+-.|+-...... +...++.|..++.+.+..+++.|+.+|+.+-....+. .++..|+..+.+ +.++
T Consensus 457 AaLGLGla~~GS~------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~------~ai~~LL~~~~e--~~~e 522 (963)
T 4ady_A 457 ASLGIGLAAMGSA------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP------EAIHDMFTYSQE--TQHG 522 (963)
T ss_dssp HHHHHHHHSTTCC------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH------HHHHHHHHHHHH--CSCH
T ss_pred HHHHHHHHhcCCC------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH------HHHHHHHHHHhc--cCcH
Confidence 8888887543211 1124677888888778778888999998773322222 245667776654 4678
Q ss_pred HHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHH
Q 048757 458 GVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQ 537 (864)
Q Consensus 458 ~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~ 537 (864)
.+++.++..|+-+.... ...++.+++.|....++-+|..++.++..-..... ...+|+.|++
T Consensus 523 ~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTG----------n~~aIq~LL~ 584 (963)
T 4ady_A 523 NITRGLAVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTG----------NNSAVKRLLH 584 (963)
T ss_dssp HHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHH
Confidence 89999999998875443 35677888888876678888888877765544211 1245676766
Q ss_pred Hh-cCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCC
Q 048757 538 LT-FSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGG 616 (864)
Q Consensus 538 lL-~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~ 616 (864)
.+ .+.+..+|..|+.+|+.+...++ ..++.++..+.+ +.++.+|..|+.+|+.++.+... ..+
T Consensus 585 ~~~~d~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~------~~a 648 (963)
T 4ady_A 585 VAVSDSNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL------QSA 648 (963)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC------HHH
T ss_pred HhccCCcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc------HHH
Confidence 64 46688899999999998866532 356777776654 58999999999999988765332 224
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCcccH--HHHHhCCcHHHHHHHhcC-CCcHHHHHHHHHHHHHhhcCCc
Q 048757 617 VAPLIALARSAVVDVHETAAGALWNLAFNPGNA--LCIVEGGGVQALIHLCSS-SLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 617 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~--~~i~~~g~v~~L~~ll~~-~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+..|..++++.+..|+..|+.+|+.+.....+. .++. +....|.....+ ..++..+..+..|.+-+--|..
T Consensus 649 id~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva--~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~ 722 (963)
T 4ady_A 649 IDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVA--DINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGR 722 (963)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHH--HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGG
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHH--HHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCC
Confidence 667888899999999999999999998733221 0111 223356666654 2358899999999886655544
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.86 E-value=2.3e-09 Score=113.22 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=125.0
Q ss_pred cCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 30 RCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
.+++|++|++++|...+.-....+++|++|++++|. +++..- ...+++|++|++ ++|. +++ +.. ...+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~-i~~~~~---~~~l~~L~~L~L--~~n~-l~~--~~~-~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ-ITDLAP---LKNLTKITELEL--SGNP-LKN--VSA-IAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCCSCCEEEC--CSCC-CSC--CGG-GTTCTT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCc-CCCChh---HccCCCCCEEEc--cCCc-CCC--chh-hcCCCC
Confidence 367899999999864321111378999999999986 554332 467899999999 6664 543 222 346899
Q ss_pred cCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEec
Q 048757 110 LRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDT 189 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l 189 (864)
|++|++++|. +++ +.. ...+++|++|++++|.--.-..+..+++|++|++++|. +++. .. ...+++|+.|++
T Consensus 109 L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l 180 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITD--VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-VSDL--TP-LANLSKLTTLKA 180 (308)
T ss_dssp CCEEECTTSC-CCC--CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCC--GG-GTTCTTCCEEEC
T ss_pred CCEEECCCCC-CCC--chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCc-CCCC--hh-hcCCCCCCEEEC
Confidence 9999999997 654 223 45699999999999864443446699999999999984 4432 22 467999999999
Q ss_pred CCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 190 SRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 190 ~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
+++..+... .+..+++|+.|++++|..-...
T Consensus 181 ~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 181 DDNKISDIS---PLASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CSSCCCCCG---GGGGCTTCCEEECTTSCCCBCG
T ss_pred CCCccCcCh---hhcCCCCCCEEEccCCccCccc
Confidence 993332111 1567799999999999765443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.84 E-value=1.4e-09 Score=113.89 Aligned_cols=174 Identities=19% Similarity=0.155 Sum_probs=123.3
Q ss_pred cCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 30 RCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
.+++|+.|++++|...+.-....+++|++|++++|. +++..- ...+++|++|++ ++|. +++ +.. ...+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~-l~~~~~---l~~l~~L~~L~l--~~n~-l~~--~~~-l~~l~~ 113 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP---LANLKNLGWLFL--DENK-VKD--LSS-LKDLKK 113 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEEC--CSSC-CCC--GGG-GTTCTT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCc-cCCCcc---cccCCCCCEEEC--CCCc-CCC--Chh-hccCCC
Confidence 367899999999854321112378999999999987 554322 467899999999 6553 544 233 457899
Q ss_pred cCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEec
Q 048757 110 LRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDT 189 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l 189 (864)
|++|++++|. +++ +.. ...+++|++|++++|.--+-..+..+++|++|++++|. +++... ...+++|+.|++
T Consensus 114 L~~L~L~~n~-i~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~L~L 185 (291)
T 1h6t_A 114 LKSLSLEHNG-ISD--ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYL 185 (291)
T ss_dssp CCEEECTTSC-CCC--CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCC--Chh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCc-cccchh---hcCCCccCEEEC
Confidence 9999999987 654 233 34589999999999864333455599999999999985 443221 467999999999
Q ss_pred CCCCCCHHHHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 190 SRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 190 ~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
+++..+.- ..+..+++|+.|++.+|+......
T Consensus 186 ~~N~i~~l---~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 186 SKNHISDL---RALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CSSCCCBC---GGGTTCTTCSEEEEEEEEEECCCE
T ss_pred CCCcCCCC---hhhccCCCCCEEECcCCcccCCcc
Confidence 99443321 126678999999999987655443
No 96
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.84 E-value=2.1e-10 Score=120.09 Aligned_cols=206 Identities=17% Similarity=0.186 Sum_probs=126.2
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
|...+.|+|+++.+..- .......+++|++|+++++..... -....+++|++|+++++..++...... ...+++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCC
T ss_pred CCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCC
Confidence 55678888887765431 111235678888888888753321 111267888899888886444321111 24578888
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---HhcCCCCcCE
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALENLSSVRY 160 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~~~~~L~~ 160 (864)
+|++ ++|. ++... ......+++|++|+++++. ++.-. ......+++|++|++++|. ++.. .+..+++|++
T Consensus 109 ~L~l--~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 109 TLHL--DRCG-LQELG-PGLFRGLAALQYLYLQDNA-LQALP-DDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDR 181 (285)
T ss_dssp EEEC--TTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCE
T ss_pred EEEC--CCCc-CCEEC-HhHhhCCcCCCEEECCCCc-ccccC-HhHhccCCCccEEECCCCc-ccccCHHHhcCccccCE
Confidence 9988 6553 33211 1123467889999998876 44211 1123457889999998874 4432 3447888999
Q ss_pred EEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 161 LSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 161 L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
|+++++. +++..... ...+++|+.|+++++..+.. ....+..+++|+.|++.+++..-+.
T Consensus 182 L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 182 LLLHQNR-VAHVHPHA-FRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp EECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCSCC-CHHHHTTCTTCCEEECCSSCEECSG
T ss_pred EECCCCc-ccccCHhH-ccCcccccEeeCCCCcCCcC-CHHHcccCcccCEEeccCCCccCCC
Confidence 9998874 33322222 24688899999988333211 1123456788999999888866444
No 97
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.83 E-value=7.4e-11 Score=125.94 Aligned_cols=194 Identities=14% Similarity=0.154 Sum_probs=113.2
Q ss_pred CCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH--HhCCcccceeeeecCCCCCHHHHHHH--------Hh
Q 048757 8 LWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMI--ILQARRLREINVEFCRELTDAIFSAI--------VA 77 (864)
Q Consensus 8 lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~--~~~~~~L~~L~l~~c~~l~d~~l~~l--------~~ 77 (864)
.++.|||+++.+. .+......+++|++|++++|... .++ ...+++|++|++++|..++... ..+ ..
T Consensus 105 ~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 105 HLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP-EPLASTDASGEHQ 180 (328)
T ss_dssp TCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCC-SCSEEEC-CCCEE
T ss_pred CCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccC-hhHhhccchhhhc
Confidence 4555666555443 11122245666666666666432 111 1156677777777765332110 000 11
Q ss_pred CCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH--HhcCC
Q 048757 78 RHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA--ALENL 155 (864)
Q Consensus 78 ~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~--~~~~~ 155 (864)
.+++|++|++ ++| .++ .+......+++|++|++++|. ++. +..-..++++|++|++++|...+.. .+.++
T Consensus 181 ~l~~L~~L~L--~~n-~l~--~lp~~l~~l~~L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 181 GLVNLQSLRL--EWT-GIR--SLPASIANLQNLKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp ESTTCCEEEE--EEE-CCC--CCCGGGGGCTTCCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred cCCCCCEEEC--cCC-CcC--cchHhhcCCCCCCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 2677777777 444 233 222224567888888888886 542 2222456889999999988655432 34488
Q ss_pred CCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccC
Q 048757 156 SSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALN 216 (864)
Q Consensus 156 ~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~ 216 (864)
++|++|++++|...+.. .....++++|+.|+++++.... .+...+.++++|+.+.+..
T Consensus 253 ~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CCCCEEECTTCTTCCBC--CTTGGGCTTCCEEECTTCTTCC-CCCGGGGGSCTTCEEECCG
T ss_pred CCCCEEECCCCCchhhc--chhhhcCCCCCEEeCCCCCchh-hccHHHhhccCceEEeCCH
Confidence 99999999998765421 1123578999999999833211 1234466778888888763
No 98
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=4.5e-08 Score=94.48 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=46.5
Q ss_pred CCcccceeeeecCCCCCHHHHHHHH---hCCCCcceEEeccCCCCCCCHHHHHHHHh---cCcCcCeeeecccCCCcHHH
Q 048757 52 QARRLREINVEFCRELTDAIFSAIV---ARHEMLEILHFGLDVCDRISSDAIKTVAY---CCPKLRRLWLSGVREVNGDA 125 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~---~~~~~L~~L~l~~~~c~~i~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~ 125 (864)
.+++|++|+|++|..+++.+...++ ..+++|++|+| ++| .++++|...++. ..+.|++|+|++|. +++++
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~L--s~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI--VGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEEC--TTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEEC--cCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 5566666666666336666555443 23456666666 444 366666554433 23556666666655 66665
Q ss_pred HHHHHhc---CCCccEEec
Q 048757 126 INALAKQ---CRQLVEVGF 141 (864)
Q Consensus 126 l~~l~~~---~~~L~~L~l 141 (864)
...++.. ++.|++|+|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEe
Confidence 5555432 344555555
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.80 E-value=1.7e-09 Score=124.55 Aligned_cols=173 Identities=19% Similarity=0.155 Sum_probs=112.7
Q ss_pred cCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 30 RCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
.+++|+.|++++|...+.-....+++|++|+|++|. +++... ...+++|+.|+| ++|. +++ +.. ...+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~L--s~N~-l~~--l~~-l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK-LTDIKP---LTNLKNLGWLFL--DENK-IKD--LSS-LKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC-CCCCGG---GGGCTTCCEEEC--CSSC-CCC--CTT-STTCTT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC-CCCChh---hccCCCCCEEEC--cCCC-CCC--Chh-hccCCC
Confidence 356788888888753321111268888888888876 443221 456888888888 6553 433 222 346788
Q ss_pred cCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEec
Q 048757 110 LRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDT 189 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l 189 (864)
|+.|+|++|. +++ +.. ...|++|+.|+|++|..-.-..+..+++|+.|+|++|. +++... ...+++|+.|++
T Consensus 111 L~~L~Ls~N~-l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~L 182 (605)
T 1m9s_A 111 LKSLSLEHNG-ISD--ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYL 182 (605)
T ss_dssp CCEEECTTSC-CCC--CGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEEC
T ss_pred CCEEEecCCC-CCC--Ccc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCc-CCCchh---hccCCCCCEEEC
Confidence 8888888887 543 223 34588888888888754333445588888888888875 332211 457888888888
Q ss_pred CCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 190 SRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 190 ~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
+++..+.- ..+..+++|+.|++.+|+.....
T Consensus 183 s~N~i~~l---~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 183 SKNHISDL---RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CSSCCCBC---GGGTTCTTCSEEECCSEEEECCC
T ss_pred cCCCCCCC---hHHccCCCCCEEEccCCcCcCCc
Confidence 88443321 23566788888888888766543
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.79 E-value=3.2e-08 Score=116.08 Aligned_cols=197 Identities=15% Similarity=0.117 Sum_probs=152.8
Q ss_pred hhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHH-HhcCCCHHHHHHHHHHHHHHh
Q 048757 308 RQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLD-LARSPPEGLQSEVAKAIANLS 386 (864)
Q Consensus 308 ~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~~L~ 386 (864)
...|.++++.|++++++.|..|+.+|.+|+.+. ..+..+...+++..++. +|.+++.+++..|+++|+||+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~--------~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDA--------KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSH--------HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCc--------HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 344667888999999999999999999998422 24667888899887655 688899999999999999998
Q ss_pred C--CchhHHHHHhcCcHHHHHHHHccCC---------------------HHHHHHHHHHHHHhcC-CCCcHHHHHhhCcH
Q 048757 387 V--DSKVAKAVSENGGIDILADLARSTN---------------------RLVAEEVVGGLWNLSV-GEDHKGAIARAGGI 442 (864)
Q Consensus 387 ~--~~~~~~~i~~~g~i~~Lv~lL~~~~---------------------~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i 442 (864)
. .++.+..+...|++++|..+++... ..+.+.++.+|++|+. +.+....+...+++
T Consensus 105 ~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l 184 (684)
T 4gmo_A 105 QEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTI 184 (684)
T ss_dssp HHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHH
T ss_pred hhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccH
Confidence 7 4689999999999999999885311 2355678889999986 45567778889999
Q ss_pred HHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCc---HHHHHHHHHccCchhHHHHHHHHHHHHhh
Q 048757 443 KALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGG---VHALVMLARSFMFEGVQEQAARALANLVA 514 (864)
Q Consensus 443 ~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~---i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~ 514 (864)
+.|+..|........+++..|+.+|..++.++. ....+.+.+. ...+..+.+. ....+..+++.|.|+..
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~--~~~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG--TDPRAVMACGVLHNVFT 258 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS--SCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC--CcHHHHHHHHHHHhHhh
Confidence 999999866445567899999999999999876 5556666554 2334443343 24457788999999853
No 101
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.78 E-value=3.9e-10 Score=122.00 Aligned_cols=203 Identities=17% Similarity=0.098 Sum_probs=127.3
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH--HhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMI--ILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~--~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
|...+.|||+++.+..- -......+++|++|+++++....... ...+++|++|+++++. ++.... .....+++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~ 127 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSS-SWFKPLSSLT 127 (353)
T ss_dssp CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCH-HHHTTCTTCS
T ss_pred cccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCH-hHhCCCccCC
Confidence 34678899998876531 11123568899999999885432111 1278899999999886 543222 2235688999
Q ss_pred eEEeccCCCCCCCHHHHHH--HHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCc
Q 048757 84 ILHFGLDVCDRISSDAIKT--VAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSV 158 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~--l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L 158 (864)
+|++ +++ .++. +.. ....+++|++|++++|..++.-.. .....+++|++|++++|. ++. ..+..+++|
T Consensus 128 ~L~L--~~n-~l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 128 FLNL--LGN-PYKT--LGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNV 200 (353)
T ss_dssp EEEC--TTC-CCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEE
T ss_pred EEEC--CCC-CCcc--cCchhhhccCCCCcEEECCCCccccccCH-HHccCCCCCCEEECCCCC-cCccCHHHHhccccC
Confidence 9999 655 3432 211 234688999999998853432111 122457888889888875 332 344477888
Q ss_pred CEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCC------------------------------HHHHHHHhcCCCC
Q 048757 159 RYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNIN------------------------------LSSVTRLLSSSRN 208 (864)
Q Consensus 159 ~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~------------------------------~~~l~~~~~~~~~ 208 (864)
++|+++++. ++... ..+...+++|+.|+++++..+ ...+...+..+++
T Consensus 201 ~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 201 SHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CeecCCCCc-cccch-hhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccC
Confidence 888888875 33222 233345777888877772211 1134455667788
Q ss_pred CcEEEccCCCCc
Q 048757 209 LKVLIALNCPVF 220 (864)
Q Consensus 209 L~~L~~~~c~~~ 220 (864)
|+.|++++|..-
T Consensus 279 L~~L~Ls~N~l~ 290 (353)
T 2z80_A 279 LLELEFSRNQLK 290 (353)
T ss_dssp CCEEECCSSCCC
T ss_pred CCEEECCCCCCC
Confidence 888888888654
No 102
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.78 E-value=7.8e-10 Score=119.61 Aligned_cols=179 Identities=11% Similarity=0.014 Sum_probs=120.0
Q ss_pred CCCCcEEEecCCCCchHH--HHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCc
Q 048757 31 CTNLQALWFRGALSADAM--IILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCP 108 (864)
Q Consensus 31 ~~~L~~L~l~~~~~~~~l--~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~ 108 (864)
.++|++|+++++...... ....+++|++|+++++. +++..... ...+++|++|++ +++ .++.-.- .....++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L--s~n-~l~~~~~-~~~~~l~ 124 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDS-FSSLGSLEHLDL--SYN-YLSNLSS-SWFKPLS 124 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEEC--CSS-CCSSCCH-HHHTTCT
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhh-cCCCCCCCEEEC--CCC-cCCcCCH-hHhCCCc
Confidence 357999999998643211 11378999999999986 55421111 246899999999 655 3443211 2235789
Q ss_pred CcCeeeecccCCCcHHHHHH--HHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCC
Q 048757 109 KLRRLWLSGVREVNGDAINA--LAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTS 183 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~--l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~ 183 (864)
+|++|+++++. ++. +.. ...++++|++|++++|..++. ..+.++++|++|++++|. ++...... ...+++
T Consensus 125 ~L~~L~L~~n~-l~~--l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~~ 199 (353)
T 2z80_A 125 SLTFLNLLGNP-YKT--LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS-LKSIQN 199 (353)
T ss_dssp TCSEEECTTCC-CSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-TTTCSE
T ss_pred cCCEEECCCCC-Ccc--cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH-Hhcccc
Confidence 99999999986 542 221 345689999999999865554 345588999999999975 33221122 356899
Q ss_pred CcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 184 LVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 184 L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
|+.|+++++..+... ..++..+++|+.|++++|..-.
T Consensus 200 L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 200 VSHLILHMKQHILLL-EIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEEEEECSCSTTHH-HHHHHHTTTEEEEEEESCBCTT
T ss_pred CCeecCCCCccccch-hhhhhhcccccEEECCCCcccc
Confidence 999999985443211 2233445899999999887554
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.77 E-value=1.8e-08 Score=118.15 Aligned_cols=197 Identities=18% Similarity=0.070 Sum_probs=152.5
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcC--CCCcHH
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILAD-LARSTNRLVAEEVVGGLWNLSV--GEDHKG 434 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~ 434 (864)
+.+.++++.|++++++.|..|+.+|.+|+.++..+..+...++|.+++. +|.+++.+|+..|+++|+||+. +.+.+.
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 3456677889999999999999999999999999999999999988655 7888999999999999999986 457888
Q ss_pred HHHhhCcHHHHHHHHcccC-----------CCC-------HHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHc
Q 048757 435 AIARAGGIKALVDLIFKWS-----------SWN-------DGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARS 495 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~~-----------~~~-------~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~ 495 (864)
.+.+.|++++|..++++.. ... ..+...+..+|++|+..+. ....+...++++.|+..+.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 9999999999999986410 001 1344567889999987654 55677888999999999865
Q ss_pred cC--chhHHHHHHHHHHHHhhcCCCCcccchhhhccCh---HHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 048757 496 FM--FEGVQEQAARALANLVAHGDSNSNNAAVGLETGA---LEALVQLTFSKHEGVRQEAAGALWNLS 558 (864)
Q Consensus 496 ~~--~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~---i~~L~~lL~~~~~~v~~~a~~~L~~Ls 558 (864)
.+ ..+++..|+.+|..++.. ++.....+.+.+. ...+..+.++.+ ..+..++++|.|+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~d---n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSED---NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTT---CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhcc---CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 32 467999999999999985 5555666666553 333344333433 35678889999873
No 104
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.76 E-value=1.7e-10 Score=122.20 Aligned_cols=202 Identities=17% Similarity=0.152 Sum_probs=91.6
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCch----HHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSAD----AMIILQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~----~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
+..+.|+|+++.+.. .-..+...+++|++|+++++.... ......+++|++|+++++. ++. +..-...+++|
T Consensus 28 ~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~--l~~~~~~l~~L 103 (306)
T 2z66_A 28 SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT--MSSNFLGLEQL 103 (306)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEE--EEEEEETCTTC
T ss_pred CCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-ccc--ChhhcCCCCCC
Confidence 445556665554431 111122345666666666654221 0111245666666666654 221 10002345666
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH----HHhcCCCCc
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE----AALENLSSV 158 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~----~~~~~~~~L 158 (864)
++|++ +++. ++..........+++|++|+++++. ++... ......+++|++|++++|. +++ ..+..+++|
T Consensus 104 ~~L~l--~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 104 EHLDF--QHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNL 177 (306)
T ss_dssp CEEEC--TTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECS-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTC
T ss_pred CEEEC--CCCc-ccccccchhhhhccCCCEEECCCCc-CCccc-hhhcccCcCCCEEECCCCc-cccccchhHHhhCcCC
Confidence 66666 4332 2211110112345666666666654 32211 1112345666666666653 322 122256666
Q ss_pred CEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 159 RYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 159 ~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
++|++++|. +++..... ...+++|+.|+++++...... ...+..+++|+.|++++|....
T Consensus 178 ~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 178 TFLDLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp CEEECTTSC-CCEECTTT-TTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSCCCB
T ss_pred CEEECCCCC-cCCcCHHH-hcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCCCcc
Confidence 666666653 22211111 234666666666662221100 0113445666666666665433
No 105
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.75 E-value=2.3e-10 Score=121.72 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=53.7
Q ss_pred CcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---Hhc-CCCCcCEEEEeCCCCCCHHHHHHHHhcCC
Q 048757 107 CPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALE-NLSSVRYLSIAGTRNLNWSSAAIAWSKLT 182 (864)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~-~~~~L~~L~l~~c~~~~~~~l~~l~~~~~ 182 (864)
+++|++|+++++. ++.-.-. ....+++|++|++++|. +++. .+. .+++|++|++++|. ++.. ... ..++
T Consensus 119 ~~~L~~L~l~~N~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~-~~l~ 191 (317)
T 3o53_A 119 GQGKKNIYLANNK-ITMLRDL-DEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVFA 191 (317)
T ss_dssp CSSCEEEECCSSC-CCSGGGB-CTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCCT
T ss_pred cCCCCEEECCCCC-CCCccch-hhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc--ccc-cccc
Confidence 4556666666655 4331111 12346777777777754 3332 222 56777777777764 2211 111 1366
Q ss_pred CCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 183 SLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 183 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
+|+.|+++++..+. +...+..+++|+.|++++|..-
T Consensus 192 ~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 192 KLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp TCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC
T ss_pred cCCEEECCCCcCCc--chhhhcccCcccEEECcCCccc
Confidence 77777777633221 1111344566777777766543
No 106
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=6.5e-09 Score=111.36 Aligned_cols=182 Identities=10% Similarity=0.063 Sum_probs=124.3
Q ss_pred CCcEEEecCCCCc-h-------HHHH--hCCcccceeeeecCCC----C---CHHHHHHHHhCCCCcceEEeccCCCCCC
Q 048757 33 NLQALWFRGALSA-D-------AMII--LQARRLREINVEFCRE----L---TDAIFSAIVARHEMLEILHFGLDVCDRI 95 (864)
Q Consensus 33 ~L~~L~l~~~~~~-~-------~l~~--~~~~~L~~L~l~~c~~----l---~d~~l~~l~~~~~~L~~L~l~~~~c~~i 95 (864)
.++.|.+..+... + .+.. ..+++|+.|.+..... + ....+..+...+|+|++|+| ++|..+
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L--~g~~~l 185 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKI--KGTNNL 185 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEE--ECCBTC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEE--eCCCCc
Confidence 4788888765422 1 1221 2678999999865321 1 11235566788999999999 666333
Q ss_pred CHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHh-cCCCccEEeccCCCC--CCHHH-------hc--CCCCcCEEEE
Q 048757 96 SSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAK-QCRQLVEVGFIDSGG--VDEAA-------LE--NLSSVRYLSI 163 (864)
Q Consensus 96 ~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~-~~~~L~~L~l~~c~~--i~~~~-------~~--~~~~L~~L~l 163 (864)
.- ..+ .+++|++|++..|. ++++.+..++. .+|+|++|+|+.+.+ ..+.+ +. .+|+|++|++
T Consensus 186 ~l---~~~--~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L 259 (362)
T 2ra8_A 186 SI---GKK--PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGI 259 (362)
T ss_dssp BC---CSC--BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEE
T ss_pred ee---ccc--cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeC
Confidence 21 111 37899999999887 99999998875 699999999964321 11211 11 5899999999
Q ss_pred eCCCCCCHHHHHHHHh--cCCCCcEEecCCCCCCHH---HHHHHhcCCCCCcEEEccCCCCccccc
Q 048757 164 AGTRNLNWSSAAIAWS--KLTSLVGLDTSRTNINLS---SVTRLLSSSRNLKVLIALNCPVFEAEA 224 (864)
Q Consensus 164 ~~c~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~---~l~~~~~~~~~L~~L~~~~c~~~~~~~ 224 (864)
++|. +++.+...+.. .+|+|+.|+++.+..+.. .+...+..+++|+.|++++|. +++..
T Consensus 260 ~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~ 323 (362)
T 2ra8_A 260 VDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEM 323 (362)
T ss_dssp ESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHH
T ss_pred CCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHH
Confidence 9975 66666555553 578999999999666654 344333456899999999886 55544
No 107
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.74 E-value=3.9e-10 Score=127.26 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=99.1
Q ss_pred CCCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcce
Q 048757 5 SPCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEI 84 (864)
Q Consensus 5 ~p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~ 84 (864)
+++..+.|||+++.+..- .......+++|++|++++|..........+++|++|++++|. +++. ...++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~l------~~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQEL------LVGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE-EEEE------EECTTCCE
T ss_pred cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc-CCCC------CCCCCcCE
Confidence 445677788877765431 111235677788888887754322112267777777777765 3321 12366666
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhc-CCCCcCE
Q 048757 85 LHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALE-NLSSVRY 160 (864)
Q Consensus 85 L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~-~~~~L~~ 160 (864)
|++ ++|. ++... ...+++|++|++++|. ++...-.. ..++++|++|++++|. ++. ..+. .+++|++
T Consensus 104 L~L--~~N~-l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 104 LHA--ANNN-ISRVS----CSRGQGKKNIYLANNK-ITMLRDLD-EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEH 173 (487)
T ss_dssp EEC--CSSC-CCCEE----ECCCSSCEEEECCSSC-CCSGGGBC-GGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCE
T ss_pred EEC--cCCc-CCCCC----ccccCCCCEEECCCCC-CCCCCchh-hcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccE
Confidence 666 4442 32211 1235667777777665 44321111 2346667777776653 332 1222 5666777
Q ss_pred EEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 161 LSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 161 L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
|++++|. ++.. ... ..+++|+.|+++++..+. +...+..+++|+.|++++|...
T Consensus 174 L~Ls~N~-l~~~--~~~-~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 174 LNLQYNF-IYDV--KGQ-VVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp EECTTSC-CCEE--ECC-CCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC
T ss_pred EecCCCc-cccc--ccc-ccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCc
Confidence 7776654 2211 111 136666666666633221 1111334466666666666543
No 108
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.73 E-value=1.7e-09 Score=121.36 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=81.1
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHH---HHhCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAM---IILQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l---~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
|...+.|||+++.+... .......+++|++|++++|.....+ ....+++|++|++++|. ++...... ...+++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L 105 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGA-FNGLANL 105 (455)
T ss_dssp CTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTT-TTTCTTC
T ss_pred CCccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhh-ccCcccC
Confidence 46678889888766431 1122356888888888888543111 11267888888888876 43321111 2457888
Q ss_pred ceEEeccCCCCCCCHHHHHH-HHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCC
Q 048757 83 EILHFGLDVCDRISSDAIKT-VAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSG 145 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~-l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 145 (864)
++|++ ++| .+++..... ....+++|++|+++++. ++......+..++++|++|++++|.
T Consensus 106 ~~L~L--~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 106 EVLTL--TQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CEEEC--TTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CEEeC--CCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCc
Confidence 88888 655 355433222 13457888888888876 4432222224567888888887764
No 109
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.70 E-value=4.6e-09 Score=117.91 Aligned_cols=63 Identities=19% Similarity=0.235 Sum_probs=27.4
Q ss_pred CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 154 NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 154 ~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
++++|++|++++|. +++..... ...+++|+.|+++++..+.. ....+..+++|+.|++++|..
T Consensus 297 ~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l 359 (455)
T 3v47_A 297 HFTDLEQLTLAQNE-INKIDDNA-FWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNHI 359 (455)
T ss_dssp TCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEECCCCc-ccccChhH-hcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCcc
Confidence 45555555555543 22111111 13455566666655322110 012234455566666665543
No 110
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=1.2e-07 Score=91.55 Aligned_cols=124 Identities=17% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHh---cCcCcCeeeecccCCCcHHHHHHHHh---cCCCccEEecc
Q 048757 69 DAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAY---CCPKLRRLWLSGVREVNGDAINALAK---QCRQLVEVGFI 142 (864)
Q Consensus 69 d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~ 142 (864)
+..+..+...+++|++|+| ++|..++++++..++. .+++|++|+|++|. +++++...++. ..+.|++|+|+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L--~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNL--NNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHHHHHHTTCTTCCEEEC--TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHHHhcCCCCCEEEe--cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECc
Confidence 4456666777899999999 7775789988877764 46789999999987 88888776654 45788999998
Q ss_pred CCCCCCHHHhc-------CCCCcCEEEE--eCCCCCCHHHHHHHH---hcCCCCcEEecCCCCCCHH
Q 048757 143 DSGGVDEAALE-------NLSSVRYLSI--AGTRNLNWSSAAIAW---SKLTSLVGLDTSRTNINLS 197 (864)
Q Consensus 143 ~c~~i~~~~~~-------~~~~L~~L~l--~~c~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~ 197 (864)
+| .+++.+.. ..++|++|++ +++ .+++.+...+. ..+++|+.|+++++.++..
T Consensus 102 ~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 102 SN-FISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp SS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 86 47776644 6678888888 444 67877654443 4567788888877666544
No 111
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.68 E-value=6.9e-10 Score=123.91 Aligned_cols=153 Identities=15% Similarity=0.039 Sum_probs=77.6
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
|...+.|||+++.+..-.. .....+++|++|+|+++..... -....+++|++|+|+++. ++...-. ....+++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~ 139 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNG-AFVYLSKLK 139 (440)
T ss_dssp CTTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTT-TSCSCSSCC
T ss_pred CCCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHh-HhhccccCc
Confidence 4567888888776542111 1234677888888888753321 111267788888887764 4321111 123467777
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEE
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSI 163 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l 163 (864)
+|+| +++. ++.-. ......+++|++|++++|..++.-.- ....++++|++|++++|..-+-..+..+++|++|++
T Consensus 140 ~L~L--~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 214 (440)
T 3zyj_A 140 ELWL--RNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDL 214 (440)
T ss_dssp EEEC--CSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEEC
T ss_pred eeeC--CCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCc-chhhcccccCeecCCCCcCccccccCCCcccCEEEC
Confidence 7777 4442 32110 01123456666666666543322110 112345666666666653211112225555555555
Q ss_pred eCC
Q 048757 164 AGT 166 (864)
Q Consensus 164 ~~c 166 (864)
++|
T Consensus 215 s~N 217 (440)
T 3zyj_A 215 SGN 217 (440)
T ss_dssp TTS
T ss_pred CCC
Confidence 554
No 112
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.67 E-value=1e-09 Score=122.52 Aligned_cols=195 Identities=16% Similarity=0.139 Sum_probs=115.4
Q ss_pred CCeecCCCCCCCHHHHHHHHhc-CCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceE
Q 048757 9 WSSLDLRPYKFDTSAAESLSSR-CTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEIL 85 (864)
Q Consensus 9 w~~ldL~~~~~~~~~l~~i~~~-~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L 85 (864)
|+.++..+..+.. +... .++++.|+|+++..... -....+++|++|+|+++. ++...... ...+++|++|
T Consensus 45 ~~~v~c~~~~l~~-----iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L 117 (440)
T 3zyj_A 45 FSKVICVRKNLRE-----VPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGA-FNGLANLNTL 117 (440)
T ss_dssp SCEEECCSCCCSS-----CCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGG-GTTCSSCCEE
T ss_pred CCEEEeCCCCcCc-----CCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhh-ccCCccCCEE
Confidence 5566665543321 1111 24588888888764321 111278888888888876 54322112 2457888888
Q ss_pred EeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---HhcCCCCcCEEE
Q 048757 86 HFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALENLSSVRYLS 162 (864)
Q Consensus 86 ~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~~~~~L~~L~ 162 (864)
+| +++ .++... ......+++|++|+++++. ++.-. .....++++|++|++++|..++.. .+.++++|++|+
T Consensus 118 ~L--~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 118 EL--FDN-RLTTIP-NGAFVYLSKLKELWLRNNP-IESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp EC--CSS-CCSSCC-TTTSCSCSSCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred EC--CCC-cCCeeC-HhHhhccccCceeeCCCCc-ccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 88 554 343211 1123467888888888876 44211 112345788888888887665543 344788888888
Q ss_pred EeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 163 IAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 163 l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
+++|. ++. +.. ...+++|+.|+++++..+.. ....+..+++|+.|++.++..-.
T Consensus 192 L~~n~-l~~--~~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 245 (440)
T 3zyj_A 192 LAMCN-LRE--IPN-LTPLIKLDELDLSGNHLSAI-RPGSFQGLMHLQKLWMIQSQIQV 245 (440)
T ss_dssp CTTSC-CSS--CCC-CTTCSSCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCE
T ss_pred CCCCc-Ccc--ccc-cCCCcccCEEECCCCccCcc-ChhhhccCccCCEEECCCCceeE
Confidence 88874 331 112 24677888888888433211 01234566778888887776443
No 113
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.67 E-value=6e-10 Score=117.89 Aligned_cols=209 Identities=15% Similarity=0.090 Sum_probs=136.4
Q ss_pred CCCCCCeecCCCCCCCHHH-HHHHHhcCCCCcEEEecCCCCchH-HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 5 SPCLWSSLDLRPYKFDTSA-AESLSSRCTNLQALWFRGALSADA-MIILQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 5 ~p~lw~~ldL~~~~~~~~~-l~~i~~~~~~L~~L~l~~~~~~~~-l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
.-+.++.|+|+++.+.... .......+++|++|+++++..... -....+++|++|+++++. ++..........+++|
T Consensus 50 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 128 (306)
T 2z66_A 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL 128 (306)
T ss_dssp TCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTC
T ss_pred ccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCC
Confidence 3456889999988765210 011123589999999999964321 001278999999999986 3332211123568999
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcC
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVR 159 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~ 159 (864)
++|++ ++|. ++.. .......+++|++|+++++. +++..+......+++|++|++++|. +++ ..+..+++|+
T Consensus 129 ~~L~l--~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 129 IYLDI--SHTH-TRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp CEEEC--TTSC-CEEC-STTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCC
T ss_pred CEEEC--CCCc-CCcc-chhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCC
Confidence 99999 6663 3321 11223468999999999987 6543233344568999999999975 444 3445889999
Q ss_pred EEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCC-CCCcEEEccCCCCcccc
Q 048757 160 YLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSS-RNLKVLIALNCPVFEAE 223 (864)
Q Consensus 160 ~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~-~~L~~L~~~~c~~~~~~ 223 (864)
+|++++|. +++..... ...+++|+.|+++++...... ...+..+ ++|+.|++.+++...+.
T Consensus 203 ~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 203 VLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp EEECTTSC-CSBCCSGG-GTTCTTCCEEECTTSCCCBCS-SSSCCCCCTTCCEEECTTCCEECSG
T ss_pred EEECCCCc-cCccChhh-ccCcccCCEeECCCCCCcccC-HHHHHhhhccCCEEEccCCCeeccc
Confidence 99999985 33211111 357899999999994432211 1123444 48999999999875543
No 114
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.67 E-value=3.5e-09 Score=112.13 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=114.0
Q ss_pred CCCcEEEecCCCCchH-H----HHhCCcccceeeeecCCCCCHHHHHHHH-hCCCCcceEEeccCCCCCCCHH----HHH
Q 048757 32 TNLQALWFRGALSADA-M----IILQARRLREINVEFCRELTDAIFSAIV-ARHEMLEILHFGLDVCDRISSD----AIK 101 (864)
Q Consensus 32 ~~L~~L~l~~~~~~~~-l----~~~~~~~L~~L~l~~c~~l~d~~l~~l~-~~~~~L~~L~l~~~~c~~i~~~----~l~ 101 (864)
..++.+.+.++...+. + ....+++|++|++++|. ++......+. ..+++|++|++ +++. ++.. ...
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~L--s~n~-i~~~~~~~~~~ 139 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRL--RNVS-WATGRSWLAEL 139 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEE--ESCC-CSSTTSSHHHH
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEe--eccc-ccchhhhhHHH
Confidence 4588888888875543 1 12256779999999886 4332222221 45788999999 6553 4431 112
Q ss_pred HHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHh------cCCCCcCEEEEeCCCCCC-HHHH
Q 048757 102 TVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAAL------ENLSSVRYLSIAGTRNLN-WSSA 174 (864)
Q Consensus 102 ~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~------~~~~~L~~L~l~~c~~~~-~~~l 174 (864)
.+. .+++|++|++++|. ++.... ....++++|++|++++|...++.++ ..+++|++|++++|.--+ ....
T Consensus 140 ~~~-~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 216 (310)
T 4glp_A 140 QQW-LKPGLKVLSIAQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC 216 (310)
T ss_dssp HTT-BCSCCCEEEEECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH
T ss_pred Hhh-hccCCCEEEeeCCC-cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH
Confidence 223 68899999999887 533211 1234588999999999865554443 277899999999985322 2233
Q ss_pred HHHHhcCCCCcEEecCCCCCC---HHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 175 AIAWSKLTSLVGLDTSRTNIN---LSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 175 ~~l~~~~~~L~~L~l~~~~~~---~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
..+...+++|+.|+++++..+ +..+. .+..+++|++|++++|..-
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC
Confidence 334567899999999983322 11111 1222368999999888755
No 115
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.66 E-value=1.2e-09 Score=122.55 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=24.6
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---HhcCCCCcCEEEEeCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALENLSSVRYLSIAGT 166 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~~~~~L~~L~l~~c 166 (864)
.+++|++|+++++. ++.-. .....++++|++|++++|..++.. .+.++++|++|++++|
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp SCTTCCEEECCSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred ccCCCCEEECCCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 34555555555544 22100 011223455555555554433322 2224455555555444
No 116
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.65 E-value=1.3e-09 Score=122.17 Aligned_cols=202 Identities=15% Similarity=0.025 Sum_probs=99.9
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
|...+.|||+++.+..- .......+++|++|+|+++..... -....+++|++|+|+++. ++...- .....+++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~ 150 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMI-QADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPS-GAFEYLSKLR 150 (452)
T ss_dssp CTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCT-TTSSSCTTCC
T ss_pred CCCccEEECcCCcCceE-CHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccCh-hhhcccCCCC
Confidence 45678888888765431 111234678888888888753321 111267788888888775 432111 1123467777
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEE
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSI 163 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l 163 (864)
+|+| +++. ++.-. ......+++|++|++++|..++.-.. ....++++|++|++++|..-+-..+..+++|++|++
T Consensus 151 ~L~L--~~N~-l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 225 (452)
T 3zyi_A 151 ELWL--RNNP-IESIP-SYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225 (452)
T ss_dssp EEEC--CSCC-CCEEC-TTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEEC
T ss_pred EEEC--CCCC-cceeC-HhHHhcCCcccEEeCCCCCCccccCh-hhccCCCCCCEEECCCCcccccccccccccccEEEC
Confidence 7777 5442 33110 01123566777777766543332110 112345666666666654222122235556666666
Q ss_pred eCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCC
Q 048757 164 AGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCP 218 (864)
Q Consensus 164 ~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~ 218 (864)
+++. ++.... ....++++|+.|+++++...... ...+..+++|+.|++.+|.
T Consensus 226 s~N~-l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 226 SGNH-FPEIRP-GSFHGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TTSC-CSEECG-GGGTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred cCCc-CcccCc-ccccCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCCCc
Confidence 6553 221111 11234555666665552221100 0123344555555555553
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.64 E-value=1.1e-08 Score=114.12 Aligned_cols=182 Identities=16% Similarity=0.085 Sum_probs=105.3
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
+..+.|||+++.+..- .. ...+++|++|++++|.... +....+++|++|++++|. ++... ...+++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~--~~-l~~l~~L~~L~Ls~n~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM--TG-IEKLTGLTKLICTSNNITT-LDLSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC--TT-GGGCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC--hh-hcccCCCCEEEccCCcCCe-EccccCCCCCEEECcCCC-Cceee----cCCCCcCCEEE
Confidence 4567788887765431 22 3567888888888875332 112367788888888876 44421 34577888888
Q ss_pred eccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCC
Q 048757 87 FGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGT 166 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c 166 (864)
+ +++ .++.- . ...+++|++|+++++. ++.- . ..++++|++|++++|..+++..+..+++|++|++++|
T Consensus 113 L--~~N-~l~~l--~--~~~l~~L~~L~l~~N~-l~~l---~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 113 C--DTN-KLTKL--D--VSQNPLLTYLNCARNT-LTEI---D-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp C--CSS-CCSCC--C--CTTCTTCCEEECTTSC-CSCC---C-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred C--CCC-cCCee--c--CCCCCcCCEEECCCCc-ccee---c-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 8 555 34431 1 3467778888887776 4431 1 2346777777777775555555556666777777665
Q ss_pred CCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCC
Q 048757 167 RNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCP 218 (864)
Q Consensus 167 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~ 218 (864)
. ++.. . ...+++|+.|+++++..+.. -+..+++|+.|++++|.
T Consensus 181 ~-l~~l--~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 181 K-ITEL--D--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp C-CCCC--C--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSC
T ss_pred c-ccee--c--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCc
Confidence 3 2221 1 23455666666655222111 13344555555555554
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.63 E-value=4.9e-09 Score=97.57 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=64.2
Q ss_pred cccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcC
Q 048757 54 RRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQC 133 (864)
Q Consensus 54 ~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 133 (864)
++|++|++++|. +++..+......+++|+.|++ ++| .+++. .....+++|++|++++|. ++.. +......+
T Consensus 17 ~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l--~~n-~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l 87 (149)
T 2je0_A 17 SDVKELVLDNSR-SNEGKLEGLTDEFEELEFLST--INV-GLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKC 87 (149)
T ss_dssp GGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEEC--TTS-CCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHC
T ss_pred ccCeEEEccCCc-CChhHHHHHHhhcCCCcEEEC--cCC-CCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhC
Confidence 445555555554 332222222234566666666 444 23322 222346666666666665 4432 33344456
Q ss_pred CCccEEeccCCCCCCH----HHhcCCCCcCEEEEeCCCCCCHHHH--HHHHhcCCCCcEEecC
Q 048757 134 RQLVEVGFIDSGGVDE----AALENLSSVRYLSIAGTRNLNWSSA--AIAWSKLTSLVGLDTS 190 (864)
Q Consensus 134 ~~L~~L~l~~c~~i~~----~~~~~~~~L~~L~l~~c~~~~~~~l--~~l~~~~~~L~~L~l~ 190 (864)
++|++|++++|. +++ ..+..+++|++|++++|. +++... ......+++|+.||++
T Consensus 88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 777777777654 443 223366777777777663 322211 1234457777777765
No 119
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.63 E-value=1.2e-07 Score=109.13 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=84.6
Q ss_pred CcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHH--HhcCcCcCeeeecccCCCcHHH-HHHH
Q 048757 53 ARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTV--AYCCPKLRRLWLSGVREVNGDA-INAL 129 (864)
Q Consensus 53 ~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l--~~~~~~L~~L~l~~~~~l~~~~-l~~l 129 (864)
.++|++|+++++. ++... ..+...+++|++|++ ++| .+++...... ...+++|++|++++|. ++.-. ....
T Consensus 309 ~~~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~L--s~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~ 382 (549)
T 2z81_A 309 LEKVKRITVENSK-VFLVP-CSFSQHLKSLEFLDL--SEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEI 382 (549)
T ss_dssp STTCCEEEEESSC-CCCCC-HHHHHHCTTCCEEEC--CSS-CCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHH
T ss_pred cccceEEEeccCc-cccCC-HHHHhcCccccEEEc--cCC-ccccccccchhhhhccccCcEEEccCCc-ccccccchhh
Confidence 4567778887765 43211 122245788888888 655 4665433221 2457888888888876 54322 2234
Q ss_pred HhcCCCccEEeccCCCCCCHH--HhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCC
Q 048757 130 AKQCRQLVEVGFIDSGGVDEA--ALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSR 207 (864)
Q Consensus 130 ~~~~~~L~~L~l~~c~~i~~~--~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 207 (864)
...+++|++|++++|. ++.- .+..+++|++|++++|. ++.- . ..-.++|+.|++++...+. +...++
T Consensus 383 ~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l--~--~~~~~~L~~L~Ls~N~l~~-----~~~~l~ 451 (549)
T 2z81_A 383 LLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVV--K--TCIPQTLEVLDVSNNNLDS-----FSLFLP 451 (549)
T ss_dssp GGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCC--C--TTSCTTCSEEECCSSCCSC-----CCCCCT
T ss_pred hhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccc--c--chhcCCceEEECCCCChhh-----hcccCC
Confidence 5568888888888873 4421 12266777777777764 2210 0 0012466667766633221 123456
Q ss_pred CCcEEEccCCCC
Q 048757 208 NLKVLIALNCPV 219 (864)
Q Consensus 208 ~L~~L~~~~c~~ 219 (864)
+|+.|++++|..
T Consensus 452 ~L~~L~Ls~N~l 463 (549)
T 2z81_A 452 RLQELYISRNKL 463 (549)
T ss_dssp TCCEEECCSSCC
T ss_pred hhcEEECCCCcc
Confidence 666666666643
No 120
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.62 E-value=4.6e-09 Score=108.79 Aligned_cols=178 Identities=13% Similarity=0.102 Sum_probs=118.5
Q ss_pred cCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 30 RCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
.+++|+.|+++++...+.-....+++|++|++++|. +++. . -...+++|++|++ ++| .++... ......+++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L--~~n-~l~~~~-~~~~~~l~~ 110 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK-LHDI--S-ALKELTNLTYLIL--TGN-QLQSLP-NGVFDKLTN 110 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC-CCCC--G-GGTTCTTCCEEEC--TTS-CCCCCC-TTTTTTCTT
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCC-CCCc--h-hhcCCCCCCEEEC--CCC-ccCccC-hhHhcCCcC
Confidence 467899999998864321111278999999999987 5542 2 2356899999999 665 344211 112346899
Q ss_pred cCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---HhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcE
Q 048757 110 LRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVG 186 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~ 186 (864)
|++|++++|. ++.-. ......+++|++|++++|. ++.. .+.++++|++|++++|. +++.. ......+++|+.
T Consensus 111 L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~ 185 (272)
T 3rfs_A 111 LKELVLVENQ-LQSLP-DGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQLKD 185 (272)
T ss_dssp CCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCE
T ss_pred CCEEECCCCc-CCccC-HHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCC-cCccC-HHHhcCCccCCE
Confidence 9999999987 55211 1223568999999999984 4432 24588999999999984 44221 122357899999
Q ss_pred EecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 187 LDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 187 L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
|+++++.... .....+..+++|+.|++.+|+...
T Consensus 186 L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 186 LRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp EECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred EECCCCcCCc-cCHHHHhCCcCCCEEEccCCCccc
Confidence 9999833321 011335667899999999887543
No 121
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.62 E-value=2.1e-08 Score=114.64 Aligned_cols=173 Identities=12% Similarity=0.111 Sum_probs=72.9
Q ss_pred cCCCCcEEEecCCCC-ch-H-HHHh-CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHh
Q 048757 30 RCTNLQALWFRGALS-AD-A-MIIL-QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAY 105 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~-~~-~-l~~~-~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~ 105 (864)
.+++|+.++++++.. +. . +... ..++|++|++++|. ++...+ ...+++|++|++ ++| .+++..... ..
T Consensus 274 ~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L--s~n-~l~~~~~~~-~~ 345 (520)
T 2z7x_B 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC---PSKISPFLHLDF--SNN-LLTDTVFEN-CG 345 (520)
T ss_dssp CCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC---CSSCCCCCEEEC--CSS-CCCTTTTTT-CC
T ss_pred cCceeEeccccccceecchhhhhcccccCceeEEEcCCCc-cccccc---hhhCCcccEEEe--ECC-ccChhhhhh-hc
Confidence 345566666665543 11 1 1111 22345666665554 221110 034555666666 433 233211111 13
Q ss_pred cCcCcCeeeecccCCCcH-HHHHHHHhcCCCccEEeccCCCCCCHHH---hcCCCCcCEEEEeCCCCCCHHHHHHHHhcC
Q 048757 106 CCPKLRRLWLSGVREVNG-DAINALAKQCRQLVEVGFIDSGGVDEAA---LENLSSVRYLSIAGTRNLNWSSAAIAWSKL 181 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~i~~~~---~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~ 181 (864)
.+++|++|++++|. ++. ..+......+++|++|++++|....... +..+++|++|++++|. +++.. ...+
T Consensus 346 ~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~----~~~l 419 (520)
T 2z7x_B 346 HLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTI----FRCL 419 (520)
T ss_dssp CCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGG----GGSC
T ss_pred cCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcch----hhhh
Confidence 45556666665555 332 1222233445556666665543211011 2244555555555553 22211 1112
Q ss_pred -CCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCC
Q 048757 182 -TSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCP 218 (864)
Q Consensus 182 -~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~ 218 (864)
++|+.|+++++..+ .+...+..+++|+.|++.+|.
T Consensus 420 ~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 420 PPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred cccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCc
Confidence 35555555553222 122222244555555555554
No 122
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.62 E-value=1.3e-09 Score=130.66 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=6.1
Q ss_pred cCCCCcEEEecCC
Q 048757 30 RCTNLQALWFRGA 42 (864)
Q Consensus 30 ~~~~L~~L~l~~~ 42 (864)
.|++|++|++++|
T Consensus 124 ~l~~L~~L~Ls~n 136 (768)
T 3rgz_A 124 SCSGLKFLNVSSN 136 (768)
T ss_dssp GCTTCCEEECCSS
T ss_pred CCCCCCEEECcCC
Confidence 3444444444444
No 123
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.62 E-value=3.2e-09 Score=113.60 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=99.6
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH--HhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMI--ILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~--~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
|+..+.|||+++.+..- .......+++|++|++++|......+ ...+++|++|+++++. ++.-. ....++|+
T Consensus 51 ~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~----~~~~~~L~ 124 (330)
T 1xku_A 51 PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELP----EKMPKTLQ 124 (330)
T ss_dssp CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCC----SSCCTTCC
T ss_pred CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccC----hhhccccc
Confidence 55678899988765431 11123567889999998885432111 1267888888888875 43210 01235677
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHH-HHHHHhcCCCccEEeccCCCC----------------
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDA-INALAKQCRQLVEVGFIDSGG---------------- 146 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~c~~---------------- 146 (864)
+|++ +++ .++.... .....+++|++|+++++. ++..+ ......++++|++|++++|.-
T Consensus 125 ~L~l--~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l 199 (330)
T 1xku_A 125 ELRV--HEN-EITKVRK-SVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHL 199 (330)
T ss_dssp EEEC--CSS-CCCBBCH-HHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEEC
T ss_pred EEEC--CCC-cccccCH-hHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEEC
Confidence 7777 444 2332111 122356667777766665 33211 111123455555555555421
Q ss_pred ----CCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 147 ----VDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 147 ----i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
+++ ..+..+++|++|++++|. +++..... ...+++|+.|+++++..+ .+...+..+++|+.|++.+|+.
T Consensus 200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 200 DGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGS-LANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp TTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTT-GGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhh-ccCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCCCcC
Confidence 221 122355556666665543 22111111 134556666666653222 1222234455566666665554
Q ss_pred c
Q 048757 220 F 220 (864)
Q Consensus 220 ~ 220 (864)
-
T Consensus 276 ~ 276 (330)
T 1xku_A 276 S 276 (330)
T ss_dssp C
T ss_pred C
Confidence 3
No 124
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.61 E-value=4.5e-10 Score=134.67 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=52.4
Q ss_pred hcCCCCcEEEecCCCCchH----HH-HhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHH
Q 048757 29 SRCTNLQALWFRGALSADA----MI-ILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTV 103 (864)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~----l~-~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l 103 (864)
..+++|++|++++|..... +. ...+++|++|++++|. +++.. . ...+++|++|++ ++|. ++. .+..
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~L--s~n~-l~~-~~~~- 218 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDV--D-VSRCVNLEFLDV--SSNN-FST-GIPF- 218 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCC--B-CTTCTTCCEEEC--CSSC-CCS-CCCB-
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccC--C-cccCCcCCEEEC--cCCc-CCC-CCcc-
Confidence 3566677777777654321 10 2266666666666664 22100 0 034666666666 4443 211 0111
Q ss_pred HhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCC
Q 048757 104 AYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSG 145 (864)
Q Consensus 104 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 145 (864)
...+++|++|++++|. ++......+ .++++|++|++++|.
T Consensus 219 l~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 219 LGDCSALQHLDISGNK-LSGDFSRAI-STCTELKLLNISSNQ 258 (768)
T ss_dssp CTTCCSCCEEECCSSC-CCSCHHHHT-TTCSSCCEEECCSSC
T ss_pred cccCCCCCEEECcCCc-CCCcccHHH-hcCCCCCEEECCCCc
Confidence 2345666666666665 443222222 346666666666654
No 125
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.61 E-value=2.3e-08 Score=115.15 Aligned_cols=164 Identities=15% Similarity=0.176 Sum_probs=119.6
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
..++.|+|+++.+.. +.. ...|++|+.|+|++|...+......+++|++|+|++|. +++. .. ...+++|+.|+
T Consensus 43 ~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~-l~~l--~~-l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK-IKDL--SS-LKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCC--CTT-GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCC--TT-STTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC--ChH-HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCC-CCCC--hh-hccCCCCCEEE
Confidence 456778888776542 122 36799999999999964432223389999999999997 5542 22 35689999999
Q ss_pred eccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCC
Q 048757 87 FGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGT 166 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c 166 (864)
| ++|. +++ +.. ...|++|+.|+|++|. +++- .....|++|++|+|++|..-....+..+++|++|+|++|
T Consensus 116 L--s~N~-l~~--l~~-l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 116 L--EHNG-ISD--ING-LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp C--TTSC-CCC--CGG-GGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred e--cCCC-CCC--Ccc-ccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC
Confidence 9 6664 443 223 3478999999999997 6543 234569999999999986444345669999999999998
Q ss_pred CCCCHHHHHHHHhcCCCCcEEecCC
Q 048757 167 RNLNWSSAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 167 ~~~~~~~l~~l~~~~~~L~~L~l~~ 191 (864)
. +++. .. ...+++|+.|++++
T Consensus 186 ~-i~~l--~~-l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 186 H-ISDL--RA-LAGLKNLDVLELFS 206 (605)
T ss_dssp C-CCBC--GG-GTTCTTCSEEECCS
T ss_pred C-CCCC--hH-HccCCCCCEEEccC
Confidence 4 4432 33 35799999999998
No 126
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.58 E-value=3.2e-09 Score=123.96 Aligned_cols=208 Identities=15% Similarity=0.112 Sum_probs=131.1
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHH---HHhCCcccceeeeecCCCCCHHHH-HHHHhCCCCc
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAM---IILQARRLREINVEFCRELTDAIF-SAIVARHEML 82 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l---~~~~~~~L~~L~l~~c~~l~d~~l-~~l~~~~~~L 82 (864)
+.++.|+++++.+... .......+++|++|++++|.....+ ....+++|++|++++|. ++.... ......+++|
T Consensus 301 ~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 301 STLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHL 378 (606)
T ss_dssp TTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTC
T ss_pred ccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCC
Confidence 5678899998876531 1223456899999999998643211 11278999999999986 443210 1113568899
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCC--HHHhcCCCCcCE
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVD--EAALENLSSVRY 160 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~--~~~~~~~~~L~~ 160 (864)
++|++ ++|. ++... ......+++|++|++++|. ++.........++++|++|++++|.... ...+..+++|++
T Consensus 379 ~~L~l--~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 379 QSLNL--SYNE-PLSLK-TEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp CEEEC--CSCS-CEEEC-TTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred CEEEC--CCCc-CCcCC-HHHhcCCccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 99999 6663 32211 1123468899999999887 4432222224568899999999875321 233447889999
Q ss_pred EEEeCCCCCCHHHH--HHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 161 LSIAGTRNLNWSSA--AIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 161 L~l~~c~~~~~~~l--~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
|++++|. +++..+ ......+++|+.|+++++..... ....+..+++|+.|++++|......
T Consensus 454 L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 454 LNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp EECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCGGG
T ss_pred EECCCCC-CCccccccchhhccCCCccEEECCCCccCcc-ChhhhccccCCCEEECCCCccCcCC
Confidence 9998875 332111 01235688999999988433211 0123556788999999888655433
No 127
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.57 E-value=5.7e-09 Score=107.98 Aligned_cols=198 Identities=17% Similarity=0.131 Sum_probs=128.5
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhc-CCCCcEEEecCCCCchHH--HHhCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSR-CTNLQALWFRGALSADAM--IILQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~-~~~L~~L~l~~~~~~~~l--~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
+..|+.+|+++..+.. +... .+++++|+++++...... ....+++|++|+++++. ++... ..+...+++|
T Consensus 15 ~~~~~~l~~~~~~l~~-----ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~-~~~~~~l~~L 87 (270)
T 2o6q_A 15 NNNKNSVDCSSKKLTA-----IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLP-AGIFKELKNL 87 (270)
T ss_dssp ETTTTEEECTTSCCSS-----CCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCC-TTTTSSCTTC
T ss_pred CCCCCEEEccCCCCCc-----cCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeC-hhhhcCCCCC
Confidence 3468889998876542 2222 345999999998643211 11278999999999986 44211 1122568999
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcC
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVR 159 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~ 159 (864)
++|++ +++. ++.... .....+++|++|+++++. ++.-. ......+++|++|++++|. ++. ..+..+++|+
T Consensus 88 ~~L~l--~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 88 ETLWV--TDNK-LQALPI-GVFDQLVNLAELRLDRNQ-LKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLK 160 (270)
T ss_dssp CEEEC--CSSC-CCCCCT-TTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCC
T ss_pred CEEEC--CCCc-CCcCCH-hHcccccCCCEEECCCCc-cCeeC-HHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccc
Confidence 99999 6553 432111 123468999999999986 44321 1123568999999999974 333 2345889999
Q ss_pred EEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 160 YLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 160 ~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
+|++++|. ++.... .....+++|+.|+++++.... .....+..+++|+.|++.+++..
T Consensus 161 ~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 161 ELRLYNNQ-LKRVPE-GAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp EEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred eeEecCCc-CcEeCh-hHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCee
Confidence 99999874 332111 123568999999999843321 00123556789999999998753
No 128
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.57 E-value=9.9e-09 Score=109.72 Aligned_cols=145 Identities=12% Similarity=0.124 Sum_probs=95.0
Q ss_pred CCCCeecCCCCCCCHHHHHHHHh-cCCCCcEEEecCCCCchHH--HHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSS-RCTNLQALWFRGALSADAM--IILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~-~~~~L~~L~l~~~~~~~~l--~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
+.|+.+++++..+.. +.. ..++|+.|+++++...... ....+++|++|++++|. ++...... ...+++|+
T Consensus 31 c~l~~l~~~~~~l~~-----lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~ 103 (330)
T 1xku_A 31 CHLRVVQCSDLGLEK-----VPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-ISKISPGA-FAPLVKLE 103 (330)
T ss_dssp EETTEEECTTSCCCS-----CCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTT-TTTCTTCC
T ss_pred CCCeEEEecCCCccc-----cCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc-CCeeCHHH-hcCCCCCC
Confidence 368888888765432 112 2367999999998643221 11378999999999986 54321112 24689999
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC----CCHHHhcCCCCcC
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG----VDEAALENLSSVR 159 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~----i~~~~~~~~~~L~ 159 (864)
+|++ +++. ++. +. ....++|++|+++++. ++.... ....++++|++|++++|.. +....+.++++|+
T Consensus 104 ~L~L--s~n~-l~~--l~--~~~~~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 104 RLYL--SKNQ-LKE--LP--EKMPKTLQELRVHENE-ITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp EEEC--CSSC-CSB--CC--SSCCTTCCEEECCSSC-CCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred EEEC--CCCc-CCc--cC--hhhcccccEEECCCCc-ccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 9999 6553 432 10 1124799999999987 553222 2345699999999999753 2233444778888
Q ss_pred EEEEeCCC
Q 048757 160 YLSIAGTR 167 (864)
Q Consensus 160 ~L~l~~c~ 167 (864)
+|++++|.
T Consensus 175 ~L~l~~n~ 182 (330)
T 1xku_A 175 YIRIADTN 182 (330)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 88887764
No 129
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.57 E-value=7.4e-09 Score=120.30 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=54.8
Q ss_pred hcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCC
Q 048757 131 KQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSR 207 (864)
Q Consensus 131 ~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 207 (864)
..+++|++|++++|. ++. ..+.++++|++|++++|.. +. +......+|+|+.|+++++..+ .+...+..++
T Consensus 251 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l-~~--l~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~l~ 324 (597)
T 3oja_B 251 LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRL-VA--LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFD 324 (597)
T ss_dssp GGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCC-CE--EECSSSCCTTCCEEECCSSCCC--CCGGGHHHHT
T ss_pred ccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCC-CC--CCcccccCCCCcEEECCCCCCC--ccCcccccCC
Confidence 458889999998875 443 3445888888888888743 32 1222245788888888883332 1111223347
Q ss_pred CCcEEEccCCCCccc
Q 048757 208 NLKVLIALNCPVFEA 222 (864)
Q Consensus 208 ~L~~L~~~~c~~~~~ 222 (864)
+|+.|++.+|+..+.
T Consensus 325 ~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 325 RLENLYLDHNSIVTL 339 (597)
T ss_dssp TCSEEECCSSCCCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 888888888876544
No 130
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.56 E-value=2.6e-09 Score=124.12 Aligned_cols=83 Identities=17% Similarity=0.083 Sum_probs=52.9
Q ss_pred CccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEc
Q 048757 135 QLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIA 214 (864)
Q Consensus 135 ~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~ 214 (864)
+|+.|++++|.......+..+++|++|++++|. ++...... ...+++|+.|+++++..+. +......+++|+.|++
T Consensus 233 ~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 233 ELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP-FVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp CCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGG-GTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCChhhccCCCCCEEECCCCc-cCCCCHHH-hcCccCCCEEECCCCCCCC--CCcccccCCCCcEEEC
Confidence 344445554432222334488999999999875 43322222 3578999999999944332 2223455789999999
Q ss_pred cCCCCcc
Q 048757 215 LNCPVFE 221 (864)
Q Consensus 215 ~~c~~~~ 221 (864)
++|....
T Consensus 309 s~N~l~~ 315 (597)
T 3oja_B 309 SHNHLLH 315 (597)
T ss_dssp CSSCCCC
T ss_pred CCCCCCc
Confidence 9998664
No 131
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.56 E-value=1e-08 Score=112.46 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=65.0
Q ss_pred cCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCC
Q 048757 108 PKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSL 184 (864)
Q Consensus 108 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L 184 (864)
++|++|+++++. +++. . ....+++|++|++++|. +++ ..+..+++|++|++++|. ++. +......+++|
T Consensus 226 ~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~--~~~~~~~l~~L 297 (390)
T 3o6n_A 226 VELTILKLQHNN-LTDT--A-WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVA--LNLYGQPIPTL 297 (390)
T ss_dssp SSCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSC-CCE--EECSSSCCTTC
T ss_pred ccccEEECCCCC-Cccc--H-HHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCc-Ccc--cCcccCCCCCC
Confidence 467777887776 5543 2 23558888888888874 443 344478888888888874 332 11112457888
Q ss_pred cEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 185 VGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 185 ~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
+.|+++++... .+...+..+++|+.|++.+|+..+.
T Consensus 298 ~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 298 KVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred CEEECCCCcce--ecCccccccCcCCEEECCCCcccee
Confidence 88888883322 0111122347788888888875443
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.56 E-value=6.4e-09 Score=99.02 Aligned_cols=58 Identities=24% Similarity=0.413 Sum_probs=27.9
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH----HHhcCCCCcCEEEEeCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE----AALENLSSVRYLSIAGT 166 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~----~~~~~~~~L~~L~l~~c 166 (864)
.+++|++|++++|. ++.. +..+..++++|++|++++|. +++ ..+..+++|++|++++|
T Consensus 69 ~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 69 KLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp CCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS
T ss_pred cCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC
Confidence 34555555555554 3321 22333345566666665553 333 12235555555555554
No 133
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.56 E-value=5.6e-09 Score=117.99 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=80.0
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcce
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEI 84 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~ 84 (864)
+.++.|||+++.+..- .......+++|++|+++++..... -....+++|++|+++++. ++...- .....+++|++
T Consensus 56 ~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~ 132 (477)
T 2id5_A 56 PHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLD-YMFQDLYNLKS 132 (477)
T ss_dssp TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCE
T ss_pred CCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCCh-hHccccccCCE
Confidence 4577888887765421 111234678888888888753221 111267788888888775 332111 11245677888
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCCcCEEE
Q 048757 85 LHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSSVRYLS 162 (864)
Q Consensus 85 L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~L~~L~ 162 (864)
|++ +++. ++...-.. ...+++|++|++++|. ++.-.. ....++++|++|+++++.. +.+..+..+++|++|+
T Consensus 133 L~l--~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 133 LEV--GDND-LVYISHRA-FSGLNSLEQLTLEKCN-LTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp EEE--CCTT-CCEECTTS-STTCTTCCEEEEESCC-CSSCCH-HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred EEC--CCCc-cceeChhh-ccCCCCCCEEECCCCc-CcccCh-hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 877 4442 32211111 2356777777777765 433211 1224466777777766532 1112223555555555
Q ss_pred EeCCC
Q 048757 163 IAGTR 167 (864)
Q Consensus 163 l~~c~ 167 (864)
+++|.
T Consensus 207 l~~~~ 211 (477)
T 2id5_A 207 ISHWP 211 (477)
T ss_dssp EECCT
T ss_pred CCCCc
Confidence 55543
No 134
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.56 E-value=1e-07 Score=109.62 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=37.1
Q ss_pred cCCCccEEeccCCCCCCHHH------hcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcC
Q 048757 132 QCRQLVEVGFIDSGGVDEAA------LENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSS 205 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~~~------~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~ 205 (864)
++++|++|++++|. +++.. +..+++|++|++++|.--+-.........+++|+.|+++++..+ .+...+..
T Consensus 332 ~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~ 408 (549)
T 2z81_A 332 HLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH--PMPDSCQW 408 (549)
T ss_dssp HCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC--CCCSCCCC
T ss_pred cCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc--cCChhhcc
Confidence 35555555555543 33321 22455555555555532221111122344555666655553222 11222333
Q ss_pred CCCCcEEEccCCC
Q 048757 206 SRNLKVLIALNCP 218 (864)
Q Consensus 206 ~~~L~~L~~~~c~ 218 (864)
+++|+.|++++|.
T Consensus 409 ~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 409 PEKMRFLNLSSTG 421 (549)
T ss_dssp CTTCCEEECTTSC
T ss_pred cccccEEECCCCC
Confidence 4555555555554
No 135
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.55 E-value=5.3e-09 Score=118.13 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=94.0
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
|...+.|||+++.+..- .......+++|++|+|+++..... -....+++|++|+++++. ++..... ....+++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLG-VFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTT-SSTTCTTCC
T ss_pred CCCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcc-cccCCCCCC
Confidence 55678888888765431 111235678888888888753321 111278888888888875 4422111 124578888
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCCcCEE
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSSVRYL 161 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~L~~L 161 (864)
+|+| +++. ++... ......+++|++|+++++. ++...... ..++++|++|++++|.. +....+.++++|+.|
T Consensus 108 ~L~L--s~n~-i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 108 KLDI--SENK-IVILL-DYMFQDLYNLKSLEVGDND-LVYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp EEEC--TTSC-CCEEC-TTTTTTCTTCCEEEECCTT-CCEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEE
T ss_pred EEEC--CCCc-cccCC-hhHccccccCCEEECCCCc-cceeChhh-ccCCCCCCEEECCCCcCcccChhHhcccCCCcEE
Confidence 8888 6553 33211 1123467888888888876 43221111 24578888888888742 333456688888888
Q ss_pred EEeCCC
Q 048757 162 SIAGTR 167 (864)
Q Consensus 162 ~l~~c~ 167 (864)
+++++.
T Consensus 182 ~l~~n~ 187 (477)
T 2id5_A 182 RLRHLN 187 (477)
T ss_dssp EEESCC
T ss_pred eCCCCc
Confidence 888864
No 136
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.55 E-value=9.8e-10 Score=128.36 Aligned_cols=199 Identities=17% Similarity=0.069 Sum_probs=100.1
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCch----HHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSAD----AMIILQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~----~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
+.++.|++++++..... -...+++|++|++++|.... ......+++|++|++++|. ++... .....+++|
T Consensus 328 ~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L 401 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEEL 401 (606)
T ss_dssp SSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTC
T ss_pred CccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCC
Confidence 34566666665322111 12356777777777775321 1122267777777777765 22211 112346777
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH----HhcCCCCc
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA----ALENLSSV 158 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~----~~~~~~~L 158 (864)
+.|++ ++|. ++...-......+++|++|++++|. ++.... ....++++|++|++++|. +++. .+.++++|
T Consensus 402 ~~L~l--~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 402 QHLDF--QHST-LKRVTEFSAFLSLEKLLYLDISYTN-TKIDFD-GIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNL 475 (606)
T ss_dssp CEEEC--TTSE-EESTTTTTTTTTCTTCCEEECTTSC-CEECCT-TTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTC
T ss_pred CeeEC--CCCc-cCCccChhhhhccccCCEEECcCCC-CCccch-hhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCC
Confidence 77777 5442 2211110122356677777777765 332111 112346677777777653 3321 23366777
Q ss_pred CEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 159 RYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 159 ~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
++|++++|. ++..... ....+++|+.|+++++..... ....+..+++|+.|++++|..-
T Consensus 476 ~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 476 TFLDLSKCQ-LEQISWG-VFDTLHRLQLLNMSHNNLLFL-DSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCSCE-EGGGTTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCc-CCccChh-hhcccccCCEEECCCCcCCCc-CHHHccCCCcCCEEECCCCcCc
Confidence 777777663 3321111 124566777777776322210 0123445566777777766533
No 137
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.55 E-value=2.5e-09 Score=124.83 Aligned_cols=185 Identities=16% Similarity=0.124 Sum_probs=86.6
Q ss_pred cCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHH-HHHHHhc
Q 048757 30 RCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDA-IKTVAYC 106 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~-l~~l~~~ 106 (864)
.+++|++|++++|..... .....+++|++|++++|....... ......+++|++|++ ++|. ++... .......
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l--~~n~-l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-TGCLENLENLRELDL--SHDD-IETSDCCNLQLRN 374 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC-SSTTTTCTTCCEEEC--CSSC-CCEEEESTTTTTT
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc-hhhhhccCcCCEEEC--CCCc-cccccCcchhccc
Confidence 345555555555543221 011245566666666554110000 001134566666666 4432 22110 0111234
Q ss_pred CcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCC
Q 048757 107 CPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTS 183 (864)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~ 183 (864)
+++|++|++++|. ++.... .....+++|++|++++|..... ..+.++++|++|++++|.. +.... .....+++
T Consensus 375 l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~l~~ 450 (606)
T 3t6q_A 375 LSHLQSLNLSYNE-PLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSE-QLFDGLPA 450 (606)
T ss_dssp CTTCCEEECCSCS-CEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC-BTTCT-TTTTTCTT
T ss_pred CCCCCEEECCCCc-CCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc-CCcCH-HHHhCCCC
Confidence 6666666666665 332111 1123466677777766542111 1234667777777776642 21111 11245677
Q ss_pred CcEEecCCCCCCHHHH--HHHhcCCCCCcEEEccCCCCccc
Q 048757 184 LVGLDTSRTNINLSSV--TRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 184 L~~L~l~~~~~~~~~l--~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
|+.|+++++......+ ...+..+++|+.|++++|...+.
T Consensus 451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 7777777743321100 12244557777777777755433
No 138
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.55 E-value=5.5e-10 Score=130.48 Aligned_cols=184 Identities=12% Similarity=0.037 Sum_probs=90.1
Q ss_pred cCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHH-HHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCc
Q 048757 30 RCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAI-FSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCP 108 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~-l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~ 108 (864)
.+++|++|++++|..........+++|++|++++|. ++... +......+++|++|++ ++|. ++. +......++
T Consensus 326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L--~~n~-l~~--~~~~~~~l~ 399 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDL--SFNG-AII--MSANFMGLE 399 (606)
T ss_dssp CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEEC--CSCS-EEE--ECCCCTTCT
T ss_pred CCCccceeeccCCcCccchhhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeEC--CCCc-ccc--chhhccCCC
Confidence 445555555555533322111245556666665554 22110 0111234566666666 4442 211 001123456
Q ss_pred CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCC--HHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcE
Q 048757 109 KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVD--EAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVG 186 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~--~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~ 186 (864)
+|++|++++|. ++...-.....++++|++|++++|.... ...+.++++|++|++++|. +++..+......+++|+.
T Consensus 400 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~ 477 (606)
T 3vq2_A 400 ELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTF 477 (606)
T ss_dssp TCCEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCE
T ss_pred CCCeeECCCCc-cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCE
Confidence 66666666665 3322111123346777777777764211 2234467777777777763 322111222346777888
Q ss_pred EecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 187 LDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 187 L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
|+++++..+.. ....+..+++|+.|++++|...+.
T Consensus 478 L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~ 512 (606)
T 3vq2_A 478 LDLSKCQLEQI-SWGVFDTLHRLQLLNMSHNNLLFL 512 (606)
T ss_dssp EECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSCE
T ss_pred EECCCCcCCcc-ChhhhcccccCCEEECCCCcCCCc
Confidence 88877333210 112345567788888887765443
No 139
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.55 E-value=1.8e-08 Score=106.66 Aligned_cols=202 Identities=16% Similarity=0.124 Sum_probs=135.4
Q ss_pred CCCCCeecCCCCCCCHHHHHHH-HhcCCCCcEEEecCCCCch---HHHH---hCCcccceeeeecCCCCCHHHHHHHHhC
Q 048757 6 PCLWSSLDLRPYKFDTSAAESL-SSRCTNLQALWFRGALSAD---AMII---LQARRLREINVEFCRELTDAIFSAIVAR 78 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i-~~~~~~L~~L~l~~~~~~~---~l~~---~~~~~L~~L~l~~c~~l~d~~l~~l~~~ 78 (864)
...++.|||+++.+....-..+ ...+++|++|+++++.... .+.. ..+++|++|+++++. ++...... ...
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~-~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQ-VRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTT-CCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHH-hcc
Confidence 4568889998876642111111 2568899999999996432 1221 134899999999987 44322112 246
Q ss_pred CCCcceEEeccCCCCCCCHHHHHHHH--hcCcCcCeeeecccCCCcH--HHHHHHHhcCCCccEEeccCCCCCCHHH---
Q 048757 79 HEMLEILHFGLDVCDRISSDAIKTVA--YCCPKLRRLWLSGVREVNG--DAINALAKQCRQLVEVGFIDSGGVDEAA--- 151 (864)
Q Consensus 79 ~~~L~~L~l~~~~c~~i~~~~l~~l~--~~~~~L~~L~l~~~~~l~~--~~l~~l~~~~~~L~~L~l~~c~~i~~~~--- 151 (864)
+++|++|++ +++.-.+..++..-. ..+++|++|++++|. ++. .....+..++++|++|+++++. +++..
T Consensus 172 l~~L~~L~L--s~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 247 (312)
T 1wwl_A 172 FPALSTLDL--SDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP 247 (312)
T ss_dssp CSSCCEEEC--CSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS
T ss_pred CCCCCEEEC--CCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh
Confidence 899999999 766533333332222 678999999999997 762 3344566779999999999975 54422
Q ss_pred -hcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 152 -LENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 152 -~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
+..+++|++|++++|. ++. +... -.++|+.|+++++..+.. .. +..+++|+.|++.+++.-+
T Consensus 248 ~~~~l~~L~~L~Ls~N~-l~~--ip~~--~~~~L~~L~Ls~N~l~~~--p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTG-LKQ--VPKG--LPAKLSVLDLSYNRLDRN--PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSC-CSS--CCSS--CCSEEEEEECCSSCCCSC--CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCc-cCh--hhhh--ccCCceEEECCCCCCCCC--hh-HhhCCCCCEEeccCCCCCC
Confidence 2367999999999985 441 1111 116899999999443221 11 5667999999999987544
No 140
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.55 E-value=5.9e-09 Score=108.90 Aligned_cols=199 Identities=14% Similarity=0.086 Sum_probs=130.3
Q ss_pred CCeecCCCCCCCHHHHHHHH-hcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceE
Q 048757 9 WSSLDLRPYKFDTSAAESLS-SRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEIL 85 (864)
Q Consensus 9 w~~ldL~~~~~~~~~l~~i~-~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L 85 (864)
++.+|.++..+.. +. ...++|++|+++++..... -....+++|++|+++++. ++...... ...+++|++|
T Consensus 13 ~~~~~c~~~~l~~-----ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L 85 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-----VPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAA-FTGLALLEQL 85 (285)
T ss_dssp SCEEECCSSCCSS-----CCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEE
T ss_pred CeEEEcCcCCccc-----CCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhh-cCCccCCCEE
Confidence 4667776654331 11 2346799999999864321 111378999999999985 55322222 2468999999
Q ss_pred EeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCCcCEEEE
Q 048757 86 HFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSSVRYLSI 163 (864)
Q Consensus 86 ~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~L~~L~l 163 (864)
++ +++..++..... ....+++|++|+++++. ++... .....++++|++|++++|.- +....+..+++|++|++
T Consensus 86 ~l--~~n~~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 86 DL--SDNAQLRSVDPA-TFHGLGRLHTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp EC--CSCTTCCCCCTT-TTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eC--CCCCCccccCHH-HhcCCcCCCEEECCCCc-CCEEC-HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 99 766534432111 23468999999999987 54321 12245689999999999752 22233558999999999
Q ss_pred eCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 164 AGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 164 ~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
+++. ++.... .....+++|+.|+++++..+... ...+..+++|+.|++.+|..-..
T Consensus 161 ~~n~-l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~ 216 (285)
T 1ozn_A 161 HGNR-ISSVPE-RAFRGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSAL 216 (285)
T ss_dssp CSSC-CCEECT-TTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCc-ccccCH-HHhcCccccCEEECCCCcccccC-HhHccCcccccEeeCCCCcCCcC
Confidence 9974 442211 12356899999999994432111 23356678999999999865543
No 141
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.54 E-value=9.2e-09 Score=109.18 Aligned_cols=192 Identities=13% Similarity=0.065 Sum_probs=135.1
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcce
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEI 84 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~ 84 (864)
..|+..+++...+ .+.+..+...+++|++|++++|..... -....+++|++|++++|. +++.. . ...+++|++
T Consensus 10 ~~l~i~~ls~~~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~ 84 (317)
T 3o53_A 10 NRYKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRT 84 (317)
T ss_dssp TEEEEESCCTTTH-HHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCE
T ss_pred CceeEeeccccch-hhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcch--h-hhhcCCCCE
Confidence 3466677776655 456777778889999999999964432 122389999999999987 43211 1 456899999
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---HhcCCCCcCEE
Q 048757 85 LHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALENLSSVRYL 161 (864)
Q Consensus 85 L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~~~~~L~~L 161 (864)
|++ ++|. ++. + ..+++|++|+++++. ++... ...+++|++|++++|. ++.. .+..+++|++|
T Consensus 85 L~L--s~n~-l~~-----l-~~~~~L~~L~l~~n~-l~~~~----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 149 (317)
T 3o53_A 85 LDL--NNNY-VQE-----L-LVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYL 149 (317)
T ss_dssp EEC--CSSE-EEE-----E-EECTTCCEEECCSSC-CSEEE----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEE
T ss_pred EEC--cCCc-ccc-----c-cCCCCcCEEECCCCc-cCCcC----ccccCCCCEEECCCCC-CCCccchhhhccCCCCEE
Confidence 999 6663 442 1 246899999999987 54321 2347899999999975 4433 33478999999
Q ss_pred EEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 162 SIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 162 ~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
++++|. +++.....+...+++|+.|+++++..+.. .....+++|+.|++++|..-..
T Consensus 150 ~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 150 DLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp ECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEE
T ss_pred ECCCCC-CCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCCCcCCcc
Confidence 999974 55433444445789999999999443221 1122368999999999976543
No 142
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.54 E-value=1.2e-07 Score=108.20 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=44.8
Q ss_pred cCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCC
Q 048757 132 QCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRN 208 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~ 208 (864)
.+++|++|++++|. +++ ..+..+++|++|++++|.--+-..+......+++|+.|+++++..+...-...+..+++
T Consensus 322 ~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 45666666666653 333 22336666777777666433222233334566777777777633221000112344566
Q ss_pred CcEEEccCCCC
Q 048757 209 LKVLIALNCPV 219 (864)
Q Consensus 209 L~~L~~~~c~~ 219 (864)
|+.|++++|..
T Consensus 401 L~~L~Ls~N~l 411 (520)
T 2z7x_B 401 LLSLNMSSNIL 411 (520)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECcCCCC
Confidence 66666666654
No 143
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.53 E-value=6.6e-09 Score=113.97 Aligned_cols=84 Identities=17% Similarity=0.074 Sum_probs=57.5
Q ss_pred CCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEE
Q 048757 134 RQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLI 213 (864)
Q Consensus 134 ~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~ 213 (864)
++|++|++++|..-....+..+++|++|++++|. +++..... ...+++|+.|+++++.... +......+++|+.|+
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP-FVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLD 301 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCEEESGG-GTTCSSCCEEECCSSCCCE--EECSSSCCTTCCEEE
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECCCCc-CCCcChhH-ccccccCCEEECCCCcCcc--cCcccCCCCCCCEEE
Confidence 4677888888754444455589999999999985 44322222 3578999999999944322 122234578999999
Q ss_pred ccCCCCcc
Q 048757 214 ALNCPVFE 221 (864)
Q Consensus 214 ~~~c~~~~ 221 (864)
+++|....
T Consensus 302 L~~n~l~~ 309 (390)
T 3o6n_A 302 LSHNHLLH 309 (390)
T ss_dssp CCSSCCCC
T ss_pred CCCCccee
Confidence 99997543
No 144
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.52 E-value=8e-09 Score=93.64 Aligned_cols=120 Identities=21% Similarity=0.151 Sum_probs=93.2
Q ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhh
Q 048757 529 TGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANS 608 (864)
Q Consensus 529 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~ 608 (864)
...++.++.+|+++++.+|..|+.+|..+.. ..++.|+++|.+ +++.+|..|+++|+++.
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d---~~~~vR~~A~~aL~~~~------ 70 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSN---EDWRIRGAAAWIIGNFQ------ 70 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGC---SCHHHHHHHHHHHGGGC------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcC---CCHHHHHHHHHHHHhcC------
Confidence 4567889999999999999999988887732 236889999986 89999999999999654
Q ss_pred HHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048757 609 IAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAY 683 (864)
Q Consensus 609 ~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~ 683 (864)
...+++.|+.+|+++++.|+..|+++|.++. ...+++.|..++.+++ +.+|..|+.+|+.
T Consensus 71 ----~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~-~~vr~~A~~aL~~ 130 (131)
T 1te4_A 71 ----DERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGT-GFARKVAVNYLET 130 (131)
T ss_dssp ----SHHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCC-THHHHHHHHHGGG
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCC-HHHHHHHHHHHHh
Confidence 3446899999999999999999999999997 2357889999998775 7899999999864
No 145
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.52 E-value=1.8e-08 Score=93.75 Aligned_cols=124 Identities=19% Similarity=0.222 Sum_probs=84.0
Q ss_pred CCCCcEEEecCCCCch-HHHH--hCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcC
Q 048757 31 CTNLQALWFRGALSAD-AMII--LQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCC 107 (864)
Q Consensus 31 ~~~L~~L~l~~~~~~~-~l~~--~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~ 107 (864)
.++|+.|++++|...+ .+.. ..+++|++|++++|. +++. .....+++|++|++ ++|. ++.. +......+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L--s~n~-i~~~-~~~~~~~l 87 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI---ANLPKLNKLKKLEL--SDNR-VSGG-LEVLAEKC 87 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEEC--CSSC-CCSC-THHHHHHC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEEC--CCCc-ccch-HHHHhhhC
Confidence 4568888888886441 2211 267889999998885 5543 23356788999999 6554 4432 44455568
Q ss_pred cCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH------HhcCCCCcCEEEEe
Q 048757 108 PKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA------ALENLSSVRYLSIA 164 (864)
Q Consensus 108 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~------~~~~~~~L~~L~l~ 164 (864)
++|++|++++|. +++-........+++|++|++++|. +++. .+..+++|++|+++
T Consensus 88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 899999999887 6663332334568999999998874 3332 34488899998875
No 146
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.50 E-value=4.4e-08 Score=109.39 Aligned_cols=167 Identities=15% Similarity=0.075 Sum_probs=123.9
Q ss_pred cCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 30 RCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
.+++|++|+++++...+.-....+++|++|++++|. ++... ...+++|++|++ ++|. ++... ...+++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~L--s~N~-l~~~~----~~~l~~ 107 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLAC--DSNK-LTNLD----VTPLTK 107 (457)
T ss_dssp HHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEEC--CSSC-CSCCC----CTTCTT
T ss_pred HcCCCCEEEccCCCcccChhhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEEC--cCCC-Cceee----cCCCCc
Confidence 478999999999854321111378999999999987 65532 356899999999 6664 54422 357899
Q ss_pred cCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEec
Q 048757 110 LRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDT 189 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l 189 (864)
|++|+++++. ++.- . ...+++|++|++++|. ++...+.++++|++|++++|..++... ...+++|+.|++
T Consensus 108 L~~L~L~~N~-l~~l--~--~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~l 177 (457)
T 3bz5_A 108 LTYLNCDTNK-LTKL--D--VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDC 177 (457)
T ss_dssp CCEEECCSSC-CSCC--C--CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEEC
T ss_pred CCEEECCCCc-CCee--c--CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCCCCcccccc----cccCCcCCEEEC
Confidence 9999999997 6542 2 4568999999999975 555556699999999999997665431 347899999999
Q ss_pred CCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 190 SRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 190 ~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
+++..+. +. +..+++|+.|++.+|..-..
T Consensus 178 s~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 178 SFNKITE--LD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp CSSCCCC--CC--CTTCTTCCEEECCSSCCSCC
T ss_pred CCCccce--ec--cccCCCCCEEECcCCcCCee
Confidence 9944332 11 56779999999998875443
No 147
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.49 E-value=2.9e-09 Score=110.66 Aligned_cols=130 Identities=11% Similarity=-0.039 Sum_probs=53.6
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHH--HHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcce
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAM--IILQARRLREINVEFCRELTDAIFSAIVARHEMLEI 84 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l--~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~ 84 (864)
...+.|||+++.+..-. ......+++|++|++++|...... ....+++|++|+++++. ++...... ...+++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA-FSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTT-TTTCTTCCE
T ss_pred CCccEEECCCCcccccC-HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhh-hcCCccccE
Confidence 34555555555443210 001233555666666555322110 01145556666665554 22211111 133555666
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCC
Q 048757 85 LHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDS 144 (864)
Q Consensus 85 L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c 144 (864)
|++ +++. ++...-. ....+++|++|+++++. ++...+.....++++|++|++++|
T Consensus 105 L~l--~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 105 LVA--VETN-LASLENF-PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp EEC--TTSC-CCCSTTC-CCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred EEC--CCCC-ccccCch-hcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC
Confidence 665 3332 2110000 02245556666665554 332111112234555666666554
No 148
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.48 E-value=1.3e-07 Score=98.76 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=108.9
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHh
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
.+++|++|++++|. +++. .. ...+++|++|++ ++|. +++. .. ...+++|++|+++++. +++ +.. ..
T Consensus 44 ~l~~L~~L~l~~~~-i~~~--~~-~~~l~~L~~L~L--~~n~-l~~~--~~-l~~l~~L~~L~l~~n~-l~~--~~~-l~ 109 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSV--QG-IQYLPNVTKLFL--NGNK-LTDI--KP-LANLKNLGWLFLDENK-VKD--LSS-LK 109 (291)
T ss_dssp HHHTCCEEECTTSC-CCCC--TT-GGGCTTCCEEEC--CSSC-CCCC--GG-GTTCTTCCEEECCSSC-CCC--GGG-GT
T ss_pred hcCcccEEEccCCC-cccC--hh-HhcCCCCCEEEc--cCCc-cCCC--cc-cccCCCCCEEECCCCc-CCC--Chh-hc
Confidence 57889999999986 4432 22 356899999999 6663 4432 22 4579999999999987 654 233 45
Q ss_pred cCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcE
Q 048757 132 QCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKV 211 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 211 (864)
.+++|++|++++|.--+-..+..+++|++|++++|. +++. . ....+++|+.|+++++..+... . +..+++|+.
T Consensus 110 ~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~ 182 (291)
T 1h6t_A 110 DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK-ITDI--T-VLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQN 182 (291)
T ss_dssp TCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCC--G-GGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCc-CCcc--h-hhccCCCCCEEEccCCccccch--h-hcCCCccCE
Confidence 689999999999864333456699999999999985 4432 2 3457999999999994332211 1 667899999
Q ss_pred EEccCCCCcc
Q 048757 212 LIALNCPVFE 221 (864)
Q Consensus 212 L~~~~c~~~~ 221 (864)
|++++|..-+
T Consensus 183 L~L~~N~i~~ 192 (291)
T 1h6t_A 183 LYLSKNHISD 192 (291)
T ss_dssp EECCSSCCCB
T ss_pred EECCCCcCCC
Confidence 9999996544
No 149
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.48 E-value=2.2e-09 Score=108.98 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=6.3
Q ss_pred CCcccceeeeecC
Q 048757 52 QARRLREINVEFC 64 (864)
Q Consensus 52 ~~~~L~~L~l~~c 64 (864)
.+++|++|+++++
T Consensus 53 ~l~~L~~L~l~~n 65 (239)
T 2xwt_C 53 NLPNISRIYVSID 65 (239)
T ss_dssp TCTTCCEEEEECC
T ss_pred CCCCCcEEeCCCC
Confidence 3444555555444
No 150
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.48 E-value=7.2e-10 Score=128.47 Aligned_cols=13 Identities=46% Similarity=0.667 Sum_probs=6.4
Q ss_pred CCCCcCEEEEeCC
Q 048757 154 NLSSVRYLSIAGT 166 (864)
Q Consensus 154 ~~~~L~~L~l~~c 166 (864)
++++|++|++++|
T Consensus 443 ~l~~L~~L~l~~n 455 (570)
T 2z63_A 443 GLSSLEVLKMAGN 455 (570)
T ss_dssp TCTTCCEEECTTC
T ss_pred cCCcCcEEECcCC
Confidence 4445555555444
No 151
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.46 E-value=9.4e-09 Score=115.89 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=130.6
Q ss_pred CCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHH--HHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 9 WSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAM--IILQARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 9 w~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l--~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
|..-++....+ +..+..+...+++|++|+|+++...+.. ....+++|++|+|++|. +++.. . ...+++|++|+
T Consensus 12 ~~~~~~~~~~l-~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~ 86 (487)
T 3oja_A 12 YKIEKVTDSSL-KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLD 86 (487)
T ss_dssp EEEESCCTTTH-HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEE
T ss_pred eecccCchhhh-HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEE
Confidence 44444444333 3455556666779999999999644321 11388999999999987 44211 1 45789999999
Q ss_pred eccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---HhcCCCCcCEEEE
Q 048757 87 FGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALENLSSVRYLSI 163 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~~~~~L~~L~l 163 (864)
| ++| .+++ + ..+++|++|++++|. ++... ...+++|++|++++|. ++.. .+.++++|++|++
T Consensus 87 L--s~N-~l~~-----l-~~~~~L~~L~L~~N~-l~~~~----~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 87 L--NNN-YVQE-----L-LVGPSIETLHAANNN-ISRVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp C--CSS-EEEE-----E-EECTTCCEEECCSSC-CCCEE----ECCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEEC
T ss_pred e--cCC-cCCC-----C-CCCCCcCEEECcCCc-CCCCC----ccccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEEC
Confidence 9 766 3543 1 245899999999987 55421 2347999999999975 4433 3448899999999
Q ss_pred eCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 164 AGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 164 ~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
+++. ++......+...+++|+.|+++++..+.. .....+++|+.|++++|..-..
T Consensus 152 s~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 152 KLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp TTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEE
T ss_pred CCCC-CCCcChHHHhhhCCcccEEecCCCccccc---cccccCCCCCEEECCCCCCCCC
Confidence 9974 55444444555789999999999443321 1122468999999999976543
No 152
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.45 E-value=2.9e-08 Score=118.44 Aligned_cols=150 Identities=10% Similarity=0.078 Sum_probs=83.8
Q ss_pred CCCCeecCCCCCCCHH----------------HHHHHHh--cCCCCcEEEecCCCCchHHHH--hCCcccceeeeecCCC
Q 048757 7 CLWSSLDLRPYKFDTS----------------AAESLSS--RCTNLQALWFRGALSADAMII--LQARRLREINVEFCRE 66 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~----------------~l~~i~~--~~~~L~~L~l~~~~~~~~l~~--~~~~~L~~L~l~~c~~ 66 (864)
+.++.|||+++.+..+ .+..-.. .+++|++|++++|.....++. ..+++|++|+++++..
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 4567788877766541 1222222 678888888888864433221 2778888888888765
Q ss_pred CCH-H---HHHHHH---hCCCCcceEEeccCCCCCCCHHHHHH--HHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCcc
Q 048757 67 LTD-A---IFSAIV---ARHEMLEILHFGLDVCDRISSDAIKT--VAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLV 137 (864)
Q Consensus 67 l~d-~---~l~~l~---~~~~~L~~L~l~~~~c~~i~~~~l~~--l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~ 137 (864)
++. . .+..+. ..+++|+.|+| ++|. ++ .+.. ....+++|+.|+++++. ++ .+. ....+++|+
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~L--s~N~-L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp-~~~~L~~L~ 598 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYM--GYNN-LE--EFPASASLQKMVKLGLLDCVHNK-VR--HLE-AFGTNVKLT 598 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEEC--CSSC-CC--BCCCHHHHTTCTTCCEEECTTSC-CC--BCC-CCCTTSEES
T ss_pred cccccchHHHHhhhhcccccCCccEEEe--eCCc-CC--ccCChhhhhcCCCCCEEECCCCC-cc--cch-hhcCCCcce
Confidence 665 2 222221 34568888888 5443 43 2322 33467777777777765 44 222 223456666
Q ss_pred EEeccCCCCCCHH--HhcCCCC-cCEEEEeCC
Q 048757 138 EVGFIDSGGVDEA--ALENLSS-VRYLSIAGT 166 (864)
Q Consensus 138 ~L~l~~c~~i~~~--~~~~~~~-L~~L~l~~c 166 (864)
+|++++|. ++.. .+.++++ |++|++++|
T Consensus 599 ~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 599 DLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp EEECCSSC-CSCCCTTSCEECTTCCEEECCSS
T ss_pred EEECcCCc-cccchHHHhhccccCCEEECcCC
Confidence 66666653 2211 1224444 555555554
No 153
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.45 E-value=1.2e-08 Score=97.13 Aligned_cols=130 Identities=15% Similarity=0.134 Sum_probs=91.0
Q ss_pred cCCCCcEEEecCCCCch-HHHH--hCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhc
Q 048757 30 RCTNLQALWFRGALSAD-AMII--LQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYC 106 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~~~-~l~~--~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~ 106 (864)
..++|+.|++++|...+ .+.. ..+++|++|++++|. +++. .....+++|++|++ ++|. ++.. +..+...
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~L--s~N~-l~~~-~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLEL--SENR-IFGG-LDMLAEK 93 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEE--ESCC-CCSC-CCHHHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEEC--cCCc-CchH-HHHHHhh
Confidence 34669999999987541 2221 378899999999987 6554 33356899999999 6664 4432 3445556
Q ss_pred CcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH-----HHhcCCCCcCEEEEeCCCC
Q 048757 107 CPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE-----AALENLSSVRYLSIAGTRN 168 (864)
Q Consensus 107 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~-----~~~~~~~~L~~L~l~~c~~ 168 (864)
+++|++|++++|. +++-........+++|++|++++|.-... ..+..+++|++|++++|..
T Consensus 94 l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 94 LPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999999997 66522112235689999999999753222 2345899999999998853
No 154
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.44 E-value=4.9e-08 Score=116.50 Aligned_cols=181 Identities=13% Similarity=0.156 Sum_probs=119.6
Q ss_pred HhcCCCCcEEEecCCCCch-----------------HHHH----hCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 28 SSRCTNLQALWFRGALSAD-----------------AMII----LQARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~-----------------~l~~----~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
...+++|+.|+|+++.... .++. ..+++|++|++++|...+.. ......+++|+.|+
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL--PDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC--hHHHhCCCCCCEEE
Confidence 4578899999999987554 1222 16899999999998733211 12235689999999
Q ss_pred eccCCCCCCCH----HHHHHHH---hcCcCcCeeeecccCCCcHHHHHH--HHhcCCCccEEeccCCCCCCHH-HhcCCC
Q 048757 87 FGLDVCDRISS----DAIKTVA---YCCPKLRRLWLSGVREVNGDAINA--LAKQCRQLVEVGFIDSGGVDEA-ALENLS 156 (864)
Q Consensus 87 l~~~~c~~i~~----~~l~~l~---~~~~~L~~L~l~~~~~l~~~~l~~--l~~~~~~L~~L~l~~c~~i~~~-~~~~~~ 156 (864)
| ++|..++. .++..+. ..+|+|+.|++++|. ++ .+.. ...++++|++|++++|. ++.. .+.+++
T Consensus 522 L--s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~ 595 (876)
T 4ecn_A 522 I--ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNV 595 (876)
T ss_dssp C--TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTS
T ss_pred C--cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCChhhhhcCCCCCEEECCCCC-cccchhhcCCC
Confidence 9 76754665 2233332 345699999999987 65 3333 34568999999999975 4422 344889
Q ss_pred CcCEEEEeCCCCCCHHHHHHHHhcCCC-CcEEecCCCCCCHHHHHHHhcCC--CCCcEEEccCCCCcc
Q 048757 157 SVRYLSIAGTRNLNWSSAAIAWSKLTS-LVGLDTSRTNINLSSVTRLLSSS--RNLKVLIALNCPVFE 221 (864)
Q Consensus 157 ~L~~L~l~~c~~~~~~~l~~l~~~~~~-L~~L~l~~~~~~~~~l~~~~~~~--~~L~~L~~~~c~~~~ 221 (864)
+|+.|++++|. ++ .+......+++ |+.|+++++..+ .+...+... ++|+.|++++|....
T Consensus 596 ~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 596 KLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp EESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred cceEEECcCCc-cc--cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCC
Confidence 99999999875 33 22222356788 999999984433 222233333 337788887776543
No 155
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.43 E-value=4.7e-05 Score=81.63 Aligned_cols=325 Identities=13% Similarity=0.066 Sum_probs=206.1
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCH-HHHHH-HhcCCCHHHHHHHHHHHHHHhC
Q 048757 311 ATLLLSLME-SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGV-RLLLD-LARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 311 v~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i-~~L~~-lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
+..++++|+ ...+++..+....+..|...+.-. ......+.+.... ..+.. .+..++.-....+..++..++.
T Consensus 79 ~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~----~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 79 LIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYG----DDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSS----HHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcch----HHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 788999997 467889999999998887665300 0122232333222 22333 2333444444555555555543
Q ss_pred C-ch---hHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCc--HHHHHHHHccc--------
Q 048757 388 D-SK---VAKAVSENGGIDILADLARS-TNRLVAEEVVGGLWNLSVGEDHKGAIARAGG--IKALVDLIFKW-------- 452 (864)
Q Consensus 388 ~-~~---~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~--i~~L~~lL~~~-------- 452 (864)
. +. ....+.... -++..|.. .+...+..++.+|..|...++.|..+.+.++ ++++++++...
T Consensus 155 ~~~~~~~~l~~l~~~~---~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 155 NGLHNVKLVEKLLKNN---NLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TTTCCHHHHHHHHHCH---HHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred cCCccHhHHHHHhhhH---HHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 1 11 111111100 23444544 2455577889999999999999999976543 67776655432
Q ss_pred -----C-CCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcH--HHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc-cc-
Q 048757 453 -----S-SWNDGVLERAAGALANLAADDKCSLEVARAGGV--HALVMLARSFMFEGVQEQAARALANLVAHGDSNS-NN- 522 (864)
Q Consensus 453 -----~-~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i--~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~-~~- 522 (864)
+ .....++..++-++|-|+..++....+...+.. +.|+..++....+.+-+-++.+|.|+...+.... ..
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 0 113466789999999999998877777666643 6778888887678888899999999997531110 11
Q ss_pred chhhhccChHHHHHHHhcC---CCHHHHHHHHHH-------HHHhcCChhhHHHHHH-----------------------
Q 048757 523 AAVGLETGALEALVQLTFS---KHEGVRQEAAGA-------LWNLSFDDRNREAIAA----------------------- 569 (864)
Q Consensus 523 ~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~-------L~~Ls~~~~~~~~i~~----------------------- 569 (864)
...+...++++ +++.|.. .|+++.+..-.. +..++..+++..++..
T Consensus 312 ~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 312 KQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred HHHHHHccchH-HHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence 22333345544 5555544 366655433222 2333333333322221
Q ss_pred ---CCChHHHHHHHHhcC-------CCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHH
Q 048757 570 ---AGGVEALVALVRSCS-------SSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGA 638 (864)
Q Consensus 570 ---~~~i~~Lv~lL~~~~-------~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~a 638 (864)
...+..|+++|.+.. +.++.+..-|+.-++.+++. |..|..+.+-|+-+.+++++.+++++|+..|..+
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a 470 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA 470 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence 124788999997411 14688888999999999987 8888888889999999999999999999999999
Q ss_pred HHHhc
Q 048757 639 LWNLA 643 (864)
Q Consensus 639 L~~L~ 643 (864)
+..+.
T Consensus 471 vQklm 475 (480)
T 1ho8_A 471 TQAII 475 (480)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 156
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.40 E-value=1.3e-08 Score=105.25 Aligned_cols=175 Identities=19% Similarity=0.186 Sum_probs=116.8
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
|...+.|+|+++.+..- -......+++|++|+++++..... -....+++|++|+++++. ++.... .....+++|+
T Consensus 36 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~ 112 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPI-GVFDQLVNLA 112 (270)
T ss_dssp CTTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCT-TTTTTCSSCC
T ss_pred CCCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCH-hHcccccCCC
Confidence 55688999998865421 111235689999999999864321 111268999999999986 443211 1235689999
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCCcCEE
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSSVRYL 161 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~L~~L 161 (864)
+|++ +++. ++...- .....+++|++|+++++. ++.-. ......+++|++|++++|.- +....+.++++|++|
T Consensus 113 ~L~l--~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 113 ELRL--DRNQ-LKSLPP-RVFDSLTKLTYLSLGYNE-LQSLP-KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp EEEC--CSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred EEEC--CCCc-cCeeCH-HHhCcCcCCCEEECCCCc-CCccC-HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 9999 6553 332111 123468999999999986 54321 12235689999999999742 223345588999999
Q ss_pred EEeCCCCCCHHHHHHHHhcCCCCcEEecCC
Q 048757 162 SIAGTRNLNWSSAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 162 ~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~ 191 (864)
+++++. ++... ......+++|+.|++++
T Consensus 187 ~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 187 KLDNNQ-LKRVP-EGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp ECCSSC-CSCCC-TTTTTTCTTCCEEECCS
T ss_pred ECCCCc-CCcCC-HHHhccccCCCEEEecC
Confidence 999984 44211 12235789999999998
No 157
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.39 E-value=6.2e-08 Score=111.77 Aligned_cols=178 Identities=13% Similarity=0.144 Sum_probs=88.7
Q ss_pred CCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCH-HHHHHHHhcCcCc
Q 048757 32 TNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISS-DAIKTVAYCCPKL 110 (864)
Q Consensus 32 ~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~-~~l~~l~~~~~~L 110 (864)
++|++|+++++..........+++|++|+++++. +++..... ...+++|+.|++ +++ .++. ..+......+++|
T Consensus 331 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L--~~N-~l~~~~~~~~~~~~l~~L 405 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-FTDSVFQG-CSTLKRLQTLIL--QRN-GLKNFFKVALMTKNMSSL 405 (562)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTTTT-CCSCSSCCEEEC--CSS-CCCBTTHHHHTTTTCTTC
T ss_pred CcceEEEccCCCcccccCccCCCCceEEECCCCc-cccchhhh-hcccCCCCEEEC--CCC-CcCCcccchhhhcCCCCC
Confidence 3455555555543221111256667777776665 44321111 134666777777 444 3332 1222223456677
Q ss_pred CeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCC-CCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEec
Q 048757 111 RRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENL-SSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDT 189 (864)
Q Consensus 111 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~-~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l 189 (864)
++|+++++. ++...-......+++|++|++++|. +++.....+ ++|++|++++| .++ .+..-...+++|+.|++
T Consensus 406 ~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~~L~~L~L~~N-~l~--~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 406 ETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNM-LTGSVFRCLPPKVKVLDLHNN-RIM--SIPKDVTHLQALQELNV 480 (562)
T ss_dssp CEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSC-CCGGGGSSCCTTCSEEECCSS-CCC--CCCTTTTSSCCCSEEEC
T ss_pred CEEECCCCc-CCCccChhhhcCcccCCEEECCCCC-CCcchhhhhcCcCCEEECCCC-cCc--ccChhhcCCCCCCEEEC
Confidence 777777665 4321111122345667777777654 444444444 56777777766 333 11111125667777777
Q ss_pred CCCCCCHHHHHH-HhcCCCCCcEEEccCCCCcc
Q 048757 190 SRTNINLSSVTR-LLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 190 ~~~~~~~~~l~~-~~~~~~~L~~L~~~~c~~~~ 221 (864)
+++..+ .+.. .+..+++|+.|++.+++..-
T Consensus 481 ~~N~l~--~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 481 ASNQLK--SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CSSCCC--CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCCC--CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 762222 0111 24455677777777766543
No 158
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.39 E-value=4.5e-08 Score=101.32 Aligned_cols=189 Identities=12% Similarity=0.071 Sum_probs=124.1
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
...+.+++.++.+.. +.. ...+++|++|++++|...+.-....+++|++|++++|. ++.... .....+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQ-LQSLPN-GVFDKLTNLKELV 115 (272)
T ss_dssp TTCCEEECTTSCCCC--CTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEE
T ss_pred cceeeeeeCCCCccc--ccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc-cCccCh-hHhcCCcCCCEEE
Confidence 346778888765542 112 35689999999999864432111288999999999986 543211 1125689999999
Q ss_pred eccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEE
Q 048757 87 FGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSI 163 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l 163 (864)
+ ++|. ++... ......+++|++|++++|. ++.-. .....++++|++|++++|. +++ ..+..+++|++|++
T Consensus 116 L--~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 116 L--VENQ-LQSLP-DGVFDKLTNLTYLNLAHNQ-LQSLP-KGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp C--TTSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred C--CCCc-CCccC-HHHhccCCCCCEEECCCCc-cCccC-HHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence 9 6663 44211 1123468999999999996 65321 1223568999999999985 443 23458999999999
Q ss_pred eCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCC
Q 048757 164 AGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNC 217 (864)
Q Consensus 164 ~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c 217 (864)
++|. ++... ......+++|+.|++++.... ..++.|+.|.+.++
T Consensus 189 ~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 189 YQNQ-LKSVP-DGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWIN 232 (272)
T ss_dssp CSSC-CSCCC-TTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHH
T ss_pred CCCc-CCccC-HHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHH
Confidence 9985 33211 122357999999999985432 23455665555443
No 159
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.38 E-value=2.7e-08 Score=103.96 Aligned_cols=195 Identities=15% Similarity=0.106 Sum_probs=125.4
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHh-cCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSS-RCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~-~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
-+.++.+++.+..+.. +.. ..++++.|+++++..... -....+++|++|+++++. ++.... ...+++|
T Consensus 9 l~~l~~l~~~~~~l~~-----ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-----LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV---DGTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCCSS-----CCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC---CSCCTTC
T ss_pred cCCccEEECCCCCCCc-----CCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccC---CCCCCcC
Confidence 3457788888765432 211 235699999999864321 112278999999999876 543211 1468899
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcC
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVR 159 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~ 159 (864)
++|++ +++ .++ .+......+++|++|+++++. ++.-. .....++++|++|++++|. ++. ..+..+++|+
T Consensus 80 ~~L~L--s~N-~l~--~l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 80 GTLDL--SHN-QLQ--SLPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CEEEC--CSS-CCS--SCCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred CEEEC--CCC-cCC--cCchhhccCCCCCEEECCCCc-CcccC-HHHHcCCCCCCEEECCCCC-CCccChhhcccccCCC
Confidence 99999 655 343 122233568899999999986 54211 1123568899999999874 332 2344789999
Q ss_pred EEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 160 YLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 160 ~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
+|+++++. ++.. .......+++|+.|+++++... .+...+...++|+.+++.++|..-
T Consensus 152 ~L~L~~N~-l~~l-~~~~~~~l~~L~~L~L~~N~l~--~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 152 KLSLANNN-LTEL-PAGLLNGLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp EEECTTSC-CSCC-CTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred EEECCCCc-CCcc-CHHHhcCcCCCCEEECCCCcCC--ccChhhcccccCCeEEeCCCCccC
Confidence 99998874 3311 1122356889999999984333 222334445789999999887643
No 160
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.35 E-value=4.9e-08 Score=115.59 Aligned_cols=205 Identities=15% Similarity=0.088 Sum_probs=123.6
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH---HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA---MIILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~---l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
+.++.++|+++++... .......+++|+.|+++++..... .....+++|++|++++|. +++..... ...+++|+
T Consensus 381 ~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~~~~L~ 457 (680)
T 1ziw_A 381 SPLHILNLTKNKISKI-ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNS-FALVPSLQ 457 (680)
T ss_dssp SCCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTT-TTTCTTCC
T ss_pred CcCceEECCCCCCCeE-ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhh-hhcCcccc
Confidence 3578899988766421 112235688999999999875422 112378899999999886 22111111 13578899
Q ss_pred eEEeccCCCCCCCH-HHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH-----------H
Q 048757 84 ILHFGLDVCDRISS-DAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA-----------A 151 (864)
Q Consensus 84 ~L~l~~~~c~~i~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~-----------~ 151 (864)
.|++ ++|. ++. ..+......+++|+.|+++++. ++.-. .....++++|++|++++|. ++.. .
T Consensus 458 ~L~l--~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 458 RLML--RRVA-LKNVDSSPSPFQPLRNLTILDLSNNN-IANIN-DDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYF 531 (680)
T ss_dssp EEEC--TTSC-CBCTTCSSCTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCT
T ss_pred cchh--cccc-ccccccCCcccccCCCCCEEECCCCC-CCcCC-hhhhccccccCEEeCCCCC-ccccchhhccCCcchh
Confidence 9988 5553 211 1111123467888999988876 54211 1223567888888888864 4332 1
Q ss_pred hcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 152 LENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 152 ~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
+.++++|++|+++++. ++.- ......++++|+.|+++++..+. .-...+..+++|+.|++.+|..-...
T Consensus 532 ~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 532 LKGLSHLHILNLESNG-FDEI-PVEVFKDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred hcCCCCCCEEECCCCC-CCCC-CHHHcccccCcceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccC
Confidence 4477888888888864 3311 11123568888888888733321 00123456688888888888554433
No 161
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=1.1e-07 Score=97.57 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=74.5
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHh
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
.+++|++|++++|. +++.. . ...+++|++|++ ++| .+++.. . ...+++|++|+++++. +++ +..+..
T Consensus 39 ~l~~L~~L~l~~n~-i~~l~--~-l~~l~~L~~L~L--~~N-~i~~~~--~-l~~l~~L~~L~L~~N~-l~~--l~~~~~ 105 (263)
T 1xeu_A 39 ELSGVQNFNGDNSN-IQSLA--G-MQFFTNLKELHL--SHN-QISDLS--P-LKDLTKLEELSVNRNR-LKN--LNGIPS 105 (263)
T ss_dssp HHTTCSEEECTTSC-CCCCT--T-GGGCTTCCEEEC--CSS-CCCCCG--G-GTTCSSCCEEECCSSC-CSC--CTTCCC
T ss_pred hcCcCcEEECcCCC-cccch--H-HhhCCCCCEEEC--CCC-ccCCCh--h-hccCCCCCEEECCCCc-cCC--cCcccc
Confidence 45556666666654 33211 1 234566666666 433 233211 1 3356666666666665 332 111111
Q ss_pred cCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcE
Q 048757 132 QCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKV 211 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~ 211 (864)
++|++|++++|.--+-..+..+++|++|+++++. +++. .. ...+++|+.|+++++..+.. ..+..+++|+.
T Consensus 106 --~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~-i~~~--~~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~ 176 (263)
T 1xeu_A 106 --ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNK-LKSI--VM-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW 176 (263)
T ss_dssp --SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSC-CCBC--GG-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE
T ss_pred --CcccEEEccCCccCCChhhcCcccccEEECCCCc-CCCC--hH-HccCCCCCEEECCCCcCcch---HHhccCCCCCE
Confidence 5666666666542222234466666666666653 3322 11 24566666776666333221 33455566777
Q ss_pred EEccCCCCccc
Q 048757 212 LIALNCPVFEA 222 (864)
Q Consensus 212 L~~~~c~~~~~ 222 (864)
|++.+++....
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 77766654443
No 162
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.34 E-value=7e-08 Score=99.12 Aligned_cols=144 Identities=14% Similarity=0.155 Sum_probs=103.2
Q ss_pred hcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCc
Q 048757 29 SRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCP 108 (864)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~ 108 (864)
..+++|++|++++|...+.-....+++|++|++++|. +++..- ...+++|++|++ ++| .+++ +..+. . +
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~-i~~~~~---l~~l~~L~~L~L--~~N-~l~~--l~~~~-~-~ 106 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-ISDLSP---LKDLTKLEELSV--NRN-RLKN--LNGIP-S-A 106 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC-CCCCGG---GTTCSSCCEEEC--CSS-CCSC--CTTCC-C-S
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCc-cCCChh---hccCCCCCEEEC--CCC-ccCC--cCccc-c-C
Confidence 3578999999999853321111278999999999986 554332 467899999999 655 3443 22222 2 8
Q ss_pred CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEe
Q 048757 109 KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLD 188 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~ 188 (864)
+|++|++++|. +++- .. ..++++|++|++++|.--+-..+..+++|++|++++|. +++. .....+++|+.|+
T Consensus 107 ~L~~L~L~~N~-l~~~--~~-l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~-i~~~---~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 107 CLSRLFLDNNE-LRDT--DS-LIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNE-ITNT---GGLTRLKKVNWID 178 (263)
T ss_dssp SCCEEECCSSC-CSBS--GG-GTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSC-CCBC---TTSTTCCCCCEEE
T ss_pred cccEEEccCCc-cCCC--hh-hcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCc-Ccch---HHhccCCCCCEEe
Confidence 99999999997 6542 23 45689999999999763332455599999999999975 4433 2235789999999
Q ss_pred cCC
Q 048757 189 TSR 191 (864)
Q Consensus 189 l~~ 191 (864)
+++
T Consensus 179 l~~ 181 (263)
T 1xeu_A 179 LTG 181 (263)
T ss_dssp EEE
T ss_pred CCC
Confidence 998
No 163
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.33 E-value=0.00038 Score=74.68 Aligned_cols=319 Identities=14% Similarity=0.033 Sum_probs=204.2
Q ss_pred hCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCch---hH-HHHHhcCcH-HHHHH-HHccCCHHHHHHHHHHHHHhcCC
Q 048757 357 HGGVRLLLDLARS-PPEGLQSEVAKAIANLSVDSK---VA-KAVSENGGI-DILAD-LARSTNRLVAEEVVGGLWNLSVG 429 (864)
Q Consensus 357 ~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~~~~---~~-~~i~~~g~i-~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~ 429 (864)
..++..++++|+. .+.++....+..+..|..++. .+ ..+.+.... ..+.. .+..+++.....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 4567888998874 678888888888888766432 33 333444332 22333 23334445566666666666432
Q ss_pred -CCcHHHHHhhCcHH--HHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCc--HHHHHHHHHcc--------
Q 048757 430 -EDHKGAIARAGGIK--ALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGG--VHALVMLARSF-------- 496 (864)
Q Consensus 430 -~~~~~~i~~~g~i~--~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~--i~~Lv~ll~~~-------- 496 (864)
+.....+. ..+. .+...|.+ ..+...+..++.+|..|...++.|..+.+.++ ++.++..++..
T Consensus 156 ~~~~~~~l~--~l~~~~~~~~~L~~--~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~ 231 (480)
T 1ho8_A 156 GLHNVKLVE--KLLKNNNLINILQN--IEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATR 231 (480)
T ss_dssp TTCCHHHHH--HHHHCHHHHHHHHC--TTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred CCccHhHHH--HHhhhHHHHHHhcc--ccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccc
Confidence 22111111 1122 34445543 12345566789999999999999988876543 67776554421
Q ss_pred --------CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChH--HHHHHHhcC-CCHHHHHHHHHHHHHhcCChh-h-
Q 048757 497 --------MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGAL--EALVQLTFS-KHEGVRQEAAGALWNLSFDDR-N- 563 (864)
Q Consensus 497 --------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i--~~L~~lL~~-~~~~v~~~a~~~L~~Ls~~~~-~- 563 (864)
....++..++-+++-|+. ++.....+...+.. +.|+..++. ..+++.+-++.+|.|+..... .
T Consensus 232 ~~~~~~~~~~~Ql~Y~~ll~iWlLSF----~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~ 307 (480)
T 1ho8_A 232 IVATNSNHLGIQLQYHSLLLIWLLTF----NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQH 307 (480)
T ss_dssp -------CCHHHHHHHHHHHHHHHTT----SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTH
T ss_pred cccccCCCccHHHHHHHHHHHHHHHc----CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhh
Confidence 124567899999999998 45555566666643 566676664 578899999999999987641 1
Q ss_pred ----HHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHh-------c---------------cCchhh-HHhhhc--
Q 048757 564 ----REAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGL-------S---------------LSEANS-IAIGRE-- 614 (864)
Q Consensus 564 ----~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L-------~---------------~~~~~~-~~i~~~-- 614 (864)
.+.++..++ .++++.|....-.|+++.+.--...-.| + =+|..+ ..|+.+
T Consensus 308 ~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa 386 (480)
T 1ho8_A 308 KKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNI 386 (480)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHS
T ss_pred hhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHH
Confidence 222333333 6677777765667877766443332222 1 122222 233332
Q ss_pred --------CCHHHHHHHHcc----------CCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHHHH
Q 048757 615 --------GGVAPLIALARS----------AVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMARF 675 (864)
Q Consensus 615 --------~~i~~Lv~lL~~----------~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~ 675 (864)
..++.|+++|++ .++.+..-|+.=++.++. +|..+..+-+.|+=+.+++++.+++ +.||.
T Consensus 387 ~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~ 465 (480)
T 1ho8_A 387 DEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKY 465 (480)
T ss_dssp GGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHH
T ss_pred HHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHH
Confidence 345789999973 367788889999999988 7777878888899888999999886 89999
Q ss_pred HHHHHHHHhh
Q 048757 676 MAALALAYIV 685 (864)
Q Consensus 676 ~aa~aL~~l~ 685 (864)
.|..|+..+.
T Consensus 466 ~AL~avQklm 475 (480)
T 1ho8_A 466 EALKATQAII 475 (480)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 164
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.32 E-value=4.6e-08 Score=114.32 Aligned_cols=153 Identities=12% Similarity=0.194 Sum_probs=88.2
Q ss_pred HhcCCCCcEEEecCCCCchH-----------------HHH--h--CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 28 SSRCTNLQALWFRGALSADA-----------------MII--L--QARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 28 ~~~~~~L~~L~l~~~~~~~~-----------------l~~--~--~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
...+++|++|+++++..... ++. . .+++|++|++++|...+ . +......+++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~-~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-K-LPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-S-CCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-c-ChHHHhcCCCCCEEE
Confidence 45678888888888864431 222 1 57888888888886322 1 111124578888888
Q ss_pred eccCCCCCCCHHHHHH-HH-----hcCcCcCeeeecccCCCcHHHHHH--HHhcCCCccEEeccCCCCCC-HH-HhcCCC
Q 048757 87 FGLDVCDRISSDAIKT-VA-----YCCPKLRRLWLSGVREVNGDAINA--LAKQCRQLVEVGFIDSGGVD-EA-ALENLS 156 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~-l~-----~~~~~L~~L~l~~~~~l~~~~l~~--l~~~~~~L~~L~l~~c~~i~-~~-~~~~~~ 156 (864)
+ ++|..++...+.. +. ..+++|++|++++|. ++ .+.. ...++++|++|++++|. ++ .. .+..++
T Consensus 280 L--s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip~~~~l~ 353 (636)
T 4eco_A 280 V--ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSEI 353 (636)
T ss_dssp C--TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCC-CEEECCCCEEEE
T ss_pred C--cCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCc-CccchhhhCCCC
Confidence 8 6665466522222 22 235888888888876 55 2332 34457888888888864 22 11 333556
Q ss_pred CcCEEEEeCCCCCCHHHHHHHHhcCCC-CcEEecCC
Q 048757 157 SVRYLSIAGTRNLNWSSAAIAWSKLTS-LVGLDTSR 191 (864)
Q Consensus 157 ~L~~L~l~~c~~~~~~~l~~l~~~~~~-L~~L~l~~ 191 (864)
+|++|++++|. ++ .+......+++ |+.|++++
T Consensus 354 ~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 354 KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCS
T ss_pred CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccC
Confidence 66666666653 22 11111234555 66666665
No 165
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.32 E-value=4e-09 Score=122.18 Aligned_cols=177 Identities=18% Similarity=0.120 Sum_probs=102.8
Q ss_pred CCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHH-HHHHHhcCcCcC
Q 048757 33 NLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDA-IKTVAYCCPKLR 111 (864)
Q Consensus 33 ~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~-l~~l~~~~~~L~ 111 (864)
+|++|++++|... .+....+++|++|+++++........ ..+++|++|++ ++|. ++..+ .......+++|+
T Consensus 305 ~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l--~~n~-l~~~~~~~~~~~~~~~L~ 376 (570)
T 2z63_A 305 GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDL--SRNG-LSFKGCCSQSDFGTTSLK 376 (570)
T ss_dssp CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEEC--CSSC-CBEEEEEEHHHHTCSCCC
T ss_pred CccEEeeccCccc-ccCcccccccCEEeCcCCcccccccc----ccCCCCCEEeC--cCCc-cCccccccccccccCccC
Confidence 5666666666432 12223567777777777652211111 45778888888 5553 33211 011234678888
Q ss_pred eeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEe
Q 048757 112 RLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLD 188 (864)
Q Consensus 112 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~ 188 (864)
+|++++|. ++...- . ...+++|++|++++|..... ..+.++++|++|++++|.. +.. .......+++|+.|+
T Consensus 377 ~L~l~~n~-l~~~~~-~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 377 YLDLSFNG-VITMSS-N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVA-FNGIFNGLSSLEVLK 451 (570)
T ss_dssp EEECCSCS-EEEEEE-E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC-EEC-CTTTTTTCTTCCEEE
T ss_pred EEECCCCc-cccccc-c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc-ccc-chhhhhcCCcCcEEE
Confidence 88888876 332110 1 34578888888888642211 2344788889999888753 211 112234688888888
Q ss_pred cCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 189 TSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 189 l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
++++......+...+..+++|+.|++++|...+.
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 8885433222224456678888888888865443
No 166
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.32 E-value=3.8e-08 Score=89.14 Aligned_cols=122 Identities=20% Similarity=0.121 Sum_probs=91.6
Q ss_pred hcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh
Q 048757 482 RAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDD 561 (864)
Q Consensus 482 ~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~ 561 (864)
....++.++.+|+++ ++.+|..|+++|..+.. ..++.|+.+|+++++.+|..|+++|.++..
T Consensus 10 ~~~~~~~l~~~L~~~-~~~vR~~A~~~L~~~~~---------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-- 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADE-NKWVRRDVSTALSRMGD---------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-- 71 (131)
T ss_dssp -----------CCSS-CCCSSSSCCSSTTSCSS---------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--
T ss_pred ccccHHHHHHHhcCC-CHHHHHHHHHHHHHhCc---------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--
Confidence 345677788888874 57888888877765542 126899999999999999999999999853
Q ss_pred hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 048757 562 RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWN 641 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~ 641 (864)
...++.|+.++.+ +++.+|..|+++|+.+. ...+++.|+.+++++++.|+..|+.+|.+
T Consensus 72 --------~~a~~~L~~~L~d---~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --------ERAVEPLIKLLED---DSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --------HHHHHHHHHHHHH---CCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --------HHHHHHHHHHHcC---CCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1358899999987 89999999999999643 45578999999999999999999999875
Q ss_pred h
Q 048757 642 L 642 (864)
Q Consensus 642 L 642 (864)
+
T Consensus 131 i 131 (131)
T 1te4_A 131 H 131 (131)
T ss_dssp C
T ss_pred C
Confidence 3
No 167
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.32 E-value=4e-07 Score=104.91 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=40.6
Q ss_pred CCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEE
Q 048757 133 CRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVL 212 (864)
Q Consensus 133 ~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L 212 (864)
+++|++|++++|. ++... ..+++|++|++++|. ++. + ...+++|+.|+++++..+ .+...+..+++|+.|
T Consensus 220 ~~~L~~L~Ls~N~-L~~lp-~~l~~L~~L~Ls~N~-L~~--l---p~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 220 PSGLKELIVSGNR-LTSLP-VLPSELKELMVSGNR-LTS--L---PMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTV 289 (622)
T ss_dssp CTTCCEEECCSSC-CSCCC-CCCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSSCCC--SCCGGGGGSCTTCEE
T ss_pred CCCCCEEEccCCc-cCcCC-CCCCcCcEEECCCCC-CCc--C---CcccccCcEEeCCCCCCC--cCCHHHhhccccCEE
Confidence 3556666665542 33211 245666666666653 321 1 114566666666663333 222334556667777
Q ss_pred EccCCCCcc
Q 048757 213 IALNCPVFE 221 (864)
Q Consensus 213 ~~~~c~~~~ 221 (864)
++.+|+...
T Consensus 290 ~L~~N~l~~ 298 (622)
T 3g06_A 290 NLEGNPLSE 298 (622)
T ss_dssp ECCSCCCCH
T ss_pred EecCCCCCC
Confidence 776666443
No 168
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.29 E-value=2.5e-08 Score=118.04 Aligned_cols=204 Identities=13% Similarity=0.062 Sum_probs=128.0
Q ss_pred CCCCeecCCCCCCCHH-----HHHHHHhcCCCCcEEEecCCCCchHH--HHhCCcccceeeeecCCCCCHHHHHHHHhCC
Q 048757 7 CLWSSLDLRPYKFDTS-----AAESLSSRCTNLQALWFRGALSADAM--IILQARRLREINVEFCRELTDAIFSAIVARH 79 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~-----~l~~i~~~~~~L~~L~l~~~~~~~~l--~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~ 79 (864)
+.++.|+|+++.+... .... -..++|+.|++++|...... ....+++|++|+++++. ++..........+
T Consensus 353 ~~L~~L~Ls~n~~~~~~l~~~~f~~--~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~l 429 (680)
T 1ziw_A 353 INLKYLSLSNSFTSLRTLTNETFVS--LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE-IGQELTGQEWRGL 429 (680)
T ss_dssp TTCCEEECTTCBSCCCEECTTTTGG--GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CEEECCSGGGTTC
T ss_pred cCCcEEECCCCchhhhhcchhhhcc--cccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCc-CccccCcccccCc
Confidence 4578899987653211 1111 12367999999998644321 11278999999999987 3321111123568
Q ss_pred CCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcH-HHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCC
Q 048757 80 EMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNG-DAINALAKQCRQLVEVGFIDSGG--VDEAALENLS 156 (864)
Q Consensus 80 ~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~ 156 (864)
++|++|++ ++|. ++...-. ....+|+|++|+++++. ++. ..+.....++++|++|++++|.- +.+..+.+++
T Consensus 430 ~~L~~L~L--s~n~-l~~~~~~-~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 504 (680)
T 1ziw_A 430 ENIFEIYL--SYNK-YLQLTRN-SFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLE 504 (680)
T ss_dssp TTCCEEEC--CSCS-EEECCTT-TTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccEEec--CCCC-cceeChh-hhhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccc
Confidence 99999999 7664 2211111 12368999999999986 331 11112235689999999999752 2334456899
Q ss_pred CcCEEEEeCCCCCCHHH-------HHHHHhcCCCCcEEecCCCCCCHHHH-HHHhcCCCCCcEEEccCCCCcc
Q 048757 157 SVRYLSIAGTRNLNWSS-------AAIAWSKLTSLVGLDTSRTNINLSSV-TRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 157 ~L~~L~l~~c~~~~~~~-------l~~l~~~~~~L~~L~l~~~~~~~~~l-~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
+|++|+++++. ++... ......++++|+.|+++++... .+ ...+..+++|+.|+++++..-.
T Consensus 505 ~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 505 KLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp TCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCHHHcccccCcceeECCCCCCCc
Confidence 99999999875 33210 0011357899999999984433 11 1235677899999998876543
No 169
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.28 E-value=3.8e-08 Score=105.19 Aligned_cols=201 Identities=14% Similarity=0.096 Sum_probs=112.9
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH--HhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMI--ILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~--~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
++..+.|||+++.+..- .......+++|++|++++|....... ...+++|++|+++++. ++.- . ....++|+
T Consensus 53 ~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l--~--~~~~~~L~ 126 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEI--P--PNLPSSLV 126 (332)
T ss_dssp CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSC--C--SSCCTTCC
T ss_pred CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCcc--C--ccccccCC
Confidence 34678899988765421 11123568889999999886432211 1278889999998875 4321 0 01236788
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHH-HHHhc--------------------CCCccEEecc
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAIN-ALAKQ--------------------CRQLVEVGFI 142 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~-~l~~~--------------------~~~L~~L~l~ 142 (864)
+|++ +++ .++... ......+++|++|+++++. +++.++. ..... .++|++|+++
T Consensus 127 ~L~l--~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~ 201 (332)
T 2ft3_A 127 ELRI--HDN-RIRKVP-KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLD 201 (332)
T ss_dssp EEEC--CSS-CCCCCC-SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCC
T ss_pred EEEC--CCC-ccCccC-HhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECC
Confidence 8888 544 233211 1112457777777777765 4321110 00011 1456666666
Q ss_pred CCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 143 DSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 143 ~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
+|. +++ ..+..+++|++|++++|. ++..... ....+++|+.|+++++..+ .+...+..+++|+.|++.+++.
T Consensus 202 ~n~-i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 202 HNK-IQAIELEDLLRYSKLYRLGLGHNQ-IRMIENG-SLSFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp SSC-CCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTT-GGGGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCC
T ss_pred CCc-CCccCHHHhcCCCCCCEEECCCCc-CCcCChh-HhhCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCC
Confidence 653 332 234477788888887764 3221111 1246788888888874333 2223355667888888888765
Q ss_pred ccc
Q 048757 220 FEA 222 (864)
Q Consensus 220 ~~~ 222 (864)
-..
T Consensus 277 ~~~ 279 (332)
T 2ft3_A 277 TKV 279 (332)
T ss_dssp CBC
T ss_pred Ccc
Confidence 443
No 170
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.27 E-value=1.7e-08 Score=106.92 Aligned_cols=179 Identities=14% Similarity=0.217 Sum_probs=90.2
Q ss_pred hcCCCCcEEEecC-CCCchHHH--HhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHh
Q 048757 29 SRCTNLQALWFRG-ALSADAMI--ILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAY 105 (864)
Q Consensus 29 ~~~~~L~~L~l~~-~~~~~~l~--~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~ 105 (864)
..+++|++|++++ +.....++ ...+++|++|+++++. ++..... ....+++|++|++ +++. ++.. +.....
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~-~~~~l~~L~~L~L--s~N~-l~~~-~p~~~~ 146 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPD-FLSQIKTLVTLDF--SYNA-LSGT-LPPSIS 146 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCG-GGGGCTTCCEEEC--CSSE-EESC-CCGGGG
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCH-HHhCCCCCCEEeC--CCCc-cCCc-CChHHh
Confidence 4567777777774 32221111 1267777777777765 3311111 1234677777777 5442 2210 111123
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCC-CccEEeccCCCCC--CHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCR-QLVEVGFIDSGGV--DEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLT 182 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~L~~L~l~~c~~i--~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~ 182 (864)
.+++|++|+++++. ++......+. .++ +|++|++++|... ....+..++ |++|++++|. ++.. .......++
T Consensus 147 ~l~~L~~L~L~~N~-l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l~ 221 (313)
T 1ogq_A 147 SLPNLVGITFDGNR-ISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSDK 221 (313)
T ss_dssp GCTTCCEEECCSSC-CEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTTS
T ss_pred cCCCCCeEECcCCc-ccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcCC
Confidence 56777777777765 4422112222 344 7777777775321 122333444 7777776653 2211 111224567
Q ss_pred CCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 183 SLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 183 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
+|+.|+++++..+.. ...+..+++|+.|++++|...
T Consensus 222 ~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CCSEEECCSSEECCB--GGGCCCCTTCCEEECCSSCCE
T ss_pred CCCEEECCCCceeee--cCcccccCCCCEEECcCCccc
Confidence 777777777322100 011345577777777777654
No 171
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.26 E-value=9.3e-06 Score=85.34 Aligned_cols=270 Identities=14% Similarity=0.024 Sum_probs=155.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHH
Q 048757 402 DILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVA 481 (864)
Q Consensus 402 ~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~ 481 (864)
...++++.+++..+++.+--.+.+++..++.. + =++..+.+=+. ++++-++-.|.++|+++...+-..
T Consensus 71 ~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~---~~N~~iR~lALRtL~~I~~~~m~~---- 138 (355)
T 3tjz_B 71 FAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMT---GKEDSYRGPAVRALCQITDSTMLQ---- 138 (355)
T ss_dssp HHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHH---SSCHHHHHHHHHHHHHHCCTTTHH----
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcC---CCcHhHHHHHHHHHhcCCCHHHHH----
Confidence 44677888999999999988888888764321 1 14555666664 578899999999999985443211
Q ss_pred hcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh
Q 048757 482 RAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDD 561 (864)
Q Consensus 482 ~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~ 561 (864)
...+.+.+.+.+ .++.++..|+-+..+|... .++. + .++++.+-+++.+.++.++..|+.+|..+...+
T Consensus 139 --~l~~~lk~~L~d-~~pyVRk~A~l~~~kL~~~---~pe~----v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 --AIERYMKQAIVD-KVPSVSSSALVSSLHLLKC---SFDV----V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp --HHHHHHHHHHTC-SSHHHHHHHHHHHHHHTTT---CHHH----H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred --HHHHHHHHHcCC-CCHHHHHHHHHHHHHHhcc---CHHH----H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 224445666666 5799999999999999874 3332 2 268889999999999999999999999997654
Q ss_pred hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHH
Q 048757 562 RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWN 641 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~ 641 (864)
.. ++..|+.-+..+.-.++-.+..-...+..+...++- -.....++.+...|++.++.|...|+.++..
T Consensus 208 ~~--------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~---~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~ 276 (355)
T 3tjz_B 208 RL--------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDG---SRDSPLFDFIESCLRNKHEMVVYEAASAIVN 276 (355)
T ss_dssp HH--------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC
T ss_pred hH--------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHcCCChHHHHHHHHHHHh
Confidence 21 344555555542122565555555555444433200 0123456677777889999999999999999
Q ss_pred hcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCcccee----eecccccCCCcccchHH
Q 048757 642 LAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRMEDIA----SIGSSLEGTSESENLDV 710 (864)
Q Consensus 642 L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~~~~~----~~~~ll~~~~~~v~~~~ 710 (864)
+...+.. . ...++..|..++.+++ +.+|..|...|..+...+|+.+. -+..++.|.+.++.+-+
T Consensus 277 l~~~~~~---~-~~~a~~~L~~fLss~d-~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~A 344 (355)
T 3tjz_B 277 LPGCSAK---E-LAPAVSVLQLFCSSPK-AALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLA 344 (355)
T ss_dssp ---------------CCCTHHHHHHSSS-SSSHHHHHHCC---------------------------------
T ss_pred ccCCCHH---H-HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHH
Confidence 8652221 1 1345677888888776 77999999999999888886655 34447777777765554
No 172
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.25 E-value=1.1e-08 Score=108.19 Aligned_cols=200 Identities=14% Similarity=0.060 Sum_probs=127.2
Q ss_pred CCCCeecCCC-CCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH--HhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 7 CLWSSLDLRP-YKFDTSAAESLSSRCTNLQALWFRGALSADAMI--ILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 7 ~lw~~ldL~~-~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~--~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
+.++.|||++ +.+... +..-...+++|++|+++++.....++ ...+++|++|+++++. ++.... .....+++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p-~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLP-PSISSLPNLV 152 (313)
T ss_dssp TTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCC-GGGGGCTTCC
T ss_pred CCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCC-hHHhcCCCCC
Confidence 3456677763 332211 11123578999999999987542211 1278999999999986 332111 1135689999
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCc-CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCCcCE
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCP-KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSSVRY 160 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~-~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~L~~ 160 (864)
+|++ +++. ++...-..+ ..++ +|++|+++++. ++......+ ..++ |++|++++|.. .....+..+++|++
T Consensus 153 ~L~L--~~N~-l~~~~p~~l-~~l~~~L~~L~L~~N~-l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 225 (313)
T 1ogq_A 153 GITF--DGNR-ISGAIPDSY-GSFSKLFTSMTISRNR-LTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQK 225 (313)
T ss_dssp EEEC--CSSC-CEEECCGGG-GCCCTTCCEEECCSSE-EEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred eEEC--cCCc-ccCcCCHHH-hhhhhcCcEEECcCCe-eeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCCCCE
Confidence 9999 6653 432111122 3455 99999999987 543222222 3355 99999999752 22344558999999
Q ss_pred EEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 161 LSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 161 L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
|+++++...... .. ...+++|+.|+++++..+.. +...+..+++|+.|++++|+..
T Consensus 226 L~L~~N~l~~~~--~~-~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 226 IHLAKNSLAFDL--GK-VGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp EECCSSEECCBG--GG-CCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEE
T ss_pred EECCCCceeeec--Cc-ccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCccc
Confidence 999997532111 11 35689999999999443211 2234567799999999998754
No 173
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.23 E-value=1.8e-08 Score=121.95 Aligned_cols=134 Identities=16% Similarity=0.046 Sum_probs=73.8
Q ss_pred CCCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHH---HHhCCcccceeeeecCCCCCHHHHHHHHhCCCC
Q 048757 5 SPCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAM---IILQARRLREINVEFCRELTDAIFSAIVARHEM 81 (864)
Q Consensus 5 ~p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l---~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~ 81 (864)
-|+..+.|||+++.+..- .......+++|++|++++|.....+ ....+++|++|+|++|. ++...... ...+++
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~-~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDA-FQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTS-SCSCSS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhH-ccCCcc
Confidence 356677888887765421 1111245777888888887433211 11267778888887775 43221111 245777
Q ss_pred cceEEeccCCCCCCCHHHHHH-HHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCC
Q 048757 82 LEILHFGLDVCDRISSDAIKT-VAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSG 145 (864)
Q Consensus 82 L~~L~l~~~~c~~i~~~~l~~-l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 145 (864)
|++|+| ++|. +++..... ....+++|++|++++|. ++.........++++|++|+++++.
T Consensus 99 L~~L~L--s~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 99 LFELRL--YFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCCEEC--TTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cCEeeC--cCCC-CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 777777 5553 33211111 12356777777777776 4332221223457777777777753
No 174
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.22 E-value=1e-05 Score=77.33 Aligned_cols=121 Identities=14% Similarity=0.169 Sum_probs=55.2
Q ss_pred CcccceeeeecCCCCCHHHHHHHHhC---CCCcceEEeccCCCCCCCHHHHHHHHh---cCcCcCeeeecccCCCcHHHH
Q 048757 53 ARRLREINVEFCRELTDAIFSAIVAR---HEMLEILHFGLDVCDRISSDAIKTVAY---CCPKLRRLWLSGVREVNGDAI 126 (864)
Q Consensus 53 ~~~L~~L~l~~c~~l~d~~l~~l~~~---~~~L~~L~l~~~~c~~i~~~~l~~l~~---~~~~L~~L~l~~~~~l~~~~l 126 (864)
-+.|++|+|+++..++|.+...+++. -..|++|+| ++| .|+|.|...++. .-+.|++|+|+++. |++++.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L--~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga 115 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSL--ANT-AISDSEARGLIELIETSPSLRVLNVESNF-LTPELL 115 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEEC--TTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEc--cCC-CCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHH
Confidence 34455555544333445444443321 234455555 322 344444433332 22344555554444 444444
Q ss_pred HHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCC--CCCHHHHHHH---HhcCCCCcEEecCCCCCCH
Q 048757 127 NALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTR--NLNWSSAAIA---WSKLTSLVGLDTSRTNINL 196 (864)
Q Consensus 127 ~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~--~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~ 196 (864)
.+|++.+. .-+.|++|+|+++. .+++.+...+ ...-++|..|+++.+..+.
T Consensus 116 ~ala~aL~-------------------~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 116 ARLLRSTL-------------------VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHHHTT-------------------TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHHHh-------------------hCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 44443221 22346666665442 4565543222 2345667777776655443
No 175
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.21 E-value=4.9e-08 Score=99.69 Aligned_cols=16 Identities=6% Similarity=0.106 Sum_probs=8.5
Q ss_pred cCCCCCcEEEccCCCC
Q 048757 204 SSSRNLKVLIALNCPV 219 (864)
Q Consensus 204 ~~~~~L~~L~~~~c~~ 219 (864)
..+++|+.|++.+++.
T Consensus 176 ~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 176 DRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTCTTCCEEECCSCCB
T ss_pred hCCCCCCEEEeeCCce
Confidence 3445555666555554
No 176
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.21 E-value=1e-07 Score=99.56 Aligned_cols=176 Identities=15% Similarity=0.111 Sum_probs=118.9
Q ss_pred hcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCc
Q 048757 29 SRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCP 108 (864)
Q Consensus 29 ~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~ 108 (864)
..+++++.++++++.. ..++..-.+++++|+++++. ++...... ...+++|++|++ +++ .++.. ... ..++
T Consensus 7 ~~l~~l~~l~~~~~~l-~~ip~~~~~~l~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L--~~n-~l~~~--~~~-~~l~ 77 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNL-TALPPDLPKDTTILHLSENL-LYTFSLAT-LMPYTRLTQLNL--DRA-ELTKL--QVD-GTLP 77 (290)
T ss_dssp ECSTTCCEEECTTSCC-SSCCSCCCTTCCEEECTTSC-CSEEEGGG-GTTCTTCCEEEC--TTS-CCCEE--ECC-SCCT
T ss_pred cccCCccEEECCCCCC-CcCCCCCCCCCCEEEcCCCc-CCccCHHH-hhcCCCCCEEEC--CCC-ccCcc--cCC-CCCC
Confidence 3567899999988643 22322234789999999987 54322222 356899999999 655 34431 111 4789
Q ss_pred CcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCc
Q 048757 109 KLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLV 185 (864)
Q Consensus 109 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~ 185 (864)
+|++|+++++. ++ .+......+++|++|+++++. ++. ..+.++++|++|+++++. ++.. .......+++|+
T Consensus 78 ~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~-l~~~-~~~~~~~l~~L~ 151 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNE-LKTL-PPGLLTPTPKLE 151 (290)
T ss_dssp TCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCC
T ss_pred cCCEEECCCCc-CC--cCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCC-CCcc-ChhhcccccCCC
Confidence 99999999987 54 223334568999999999974 443 345589999999999974 3321 112235789999
Q ss_pred EEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 186 GLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 186 ~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
.|+++++..+. .....+..+++|+.|++.++..-
T Consensus 152 ~L~L~~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 152 KLSLANNNLTE-LPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp EEECTTSCCSC-CCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCc-cCHHHhcCcCCCCEEECCCCcCC
Confidence 99999943321 01123566789999999988755
No 177
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.21 E-value=2.8e-08 Score=120.39 Aligned_cols=110 Identities=16% Similarity=0.068 Sum_probs=65.7
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH--HhCCcccceeeeecCCCCCHHHHHH-HHhCCCCc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMI--ILQARRLREINVEFCRELTDAIFSA-IVARHEML 82 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~--~~~~~~L~~L~l~~c~~l~d~~l~~-l~~~~~~L 82 (864)
-..++.|||+++......-......+++|++|+|++|......+ ...+++|++|++++|. +++..+.. ....+++|
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-CCcccccCccccccCCC
Confidence 35578888887743211101223568889999998886432211 1278888888888886 44322111 12457888
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccC
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVR 119 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~ 119 (864)
++|++ ++|. ++..........+++|++|+++++.
T Consensus 126 ~~L~L--s~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 126 TRLDL--SKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CEEEE--ESCC-CCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CEEEC--CCCc-ccccccchhHhhCCCCCEEECCCCc
Confidence 88888 5553 3322221223568888888888875
No 178
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.17 E-value=1.3e-06 Score=100.59 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=41.7
Q ss_pred cCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCH-HHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCC
Q 048757 132 QCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNW-SSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSR 207 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~ 207 (864)
.+++|++|++++|. +++ ..+.++++|++|+++++. ++. ..+.....++++|+.|+++++......-...+..++
T Consensus 351 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 351 SPSSFTFLNFTQNV-FTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SCCCCCEEECCSSC-CCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred CCCCceEEECCCCc-cccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 45666666666653 332 222366666677666653 332 122222345666667766663222100011233445
Q ss_pred CCcEEEccCCCC
Q 048757 208 NLKVLIALNCPV 219 (864)
Q Consensus 208 ~L~~L~~~~c~~ 219 (864)
+|+.|++++|..
T Consensus 429 ~L~~L~l~~n~l 440 (562)
T 3a79_B 429 SILVLNLSSNML 440 (562)
T ss_dssp TCCEEECCSSCC
T ss_pred cCCEEECCCCCC
Confidence 566666666553
No 179
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.16 E-value=1.6e-06 Score=99.96 Aligned_cols=13 Identities=23% Similarity=0.222 Sum_probs=7.0
Q ss_pred CCCCcEEEccCCC
Q 048757 206 SRNLKVLIALNCP 218 (864)
Q Consensus 206 ~~~L~~L~~~~c~ 218 (864)
+++|+.|++++|.
T Consensus 240 l~~L~~L~Ls~N~ 252 (622)
T 3g06_A 240 PSELKELMVSGNR 252 (622)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCcCcEEECCCCC
Confidence 3555555555553
No 180
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.15 E-value=2.7e-08 Score=100.86 Aligned_cols=199 Identities=14% Similarity=0.086 Sum_probs=115.1
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHH---HHhCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAM---IILQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l---~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
|...+.|+|+++.+..- -......+++|++|+++++..+..+ ....+++|++|++++|..++..... ....+++|
T Consensus 30 ~~~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L 107 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLL 107 (239)
T ss_dssp CTTCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-SEECCTTC
T ss_pred CCcccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCC
Confidence 44567788877765421 1112345788999999888633221 1137888999999885556532111 12457888
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcC---eeeecccCCCcHHHHHHHHhcCCCcc-EEeccCCCCCCHHHhc--CCC
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLR---RLWLSGVREVNGDAINALAKQCRQLV-EVGFIDSGGVDEAALE--NLS 156 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~---~L~l~~~~~l~~~~l~~l~~~~~~L~-~L~l~~c~~i~~~~~~--~~~ 156 (864)
++|++ +++. ++. +.. ...+++|+ +|+++++..++.-.- ....++++|+ +|+++++. ++..... ..+
T Consensus 108 ~~L~l--~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~ 179 (239)
T 2xwt_C 108 KFLGI--FNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG-FTSVQGYAFNGT 179 (239)
T ss_dssp CEEEE--EEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCC-CCEECTTTTTTC
T ss_pred CEEeC--CCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCC-CcccCHhhcCCC
Confidence 99888 5443 322 222 34567777 888888733442111 1134578888 88888864 4422211 337
Q ss_pred CcCEEEEeCCCCCCHHHHHHHHhcC-CCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 157 SVRYLSIAGTRNLNWSSAAIAWSKL-TSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 157 ~L~~L~l~~c~~~~~~~l~~l~~~~-~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
+|++|++++|..++.... .....+ ++|+.|+++++..+. +.. ..+++|+.|.+.+|..
T Consensus 180 ~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~--l~~--~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 180 KLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTA--LPS--KGLEHLKELIARNTWT 238 (239)
T ss_dssp EEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCC--CCC--TTCTTCSEEECTTC--
T ss_pred CCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCcccc--CCh--hHhccCceeeccCccC
Confidence 888888888754542211 123456 888888888833221 000 1347788888887754
No 181
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.13 E-value=0.00017 Score=68.62 Aligned_cols=217 Identities=15% Similarity=0.050 Sum_probs=155.6
Q ss_pred hCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC-CCcHH
Q 048757 357 HGGVRLLLDLARSPPEGLQSEVAKAIANLSVD-SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG-EDHKG 434 (864)
Q Consensus 357 ~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~-~~~~~ 434 (864)
.+.+..|..+|.+.|+.++..++.+|.++-.. +..-....-...++.+++++++.|..+.-.|+++|..|-.+ |-...
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34678899999999999999999999998774 33333333456789999999999999999999999998653 33344
Q ss_pred HHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhh
Q 048757 435 AIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVA 514 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~ 514 (864)
.+.. .+..+.+++. ++++-++..++..++.+--....+ +.+..+..++.+ .+..++..+..+|.+++.
T Consensus 112 ~y~K--l~~aL~dlik---~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~S-kd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLE---SPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVS-PDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp HHHH--HHHHHHHHTT---SCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTC-SSHHHHHHHHHHHHHHGG
T ss_pred HHHH--HHHHHHHHhc---CCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhC-CChhHHHHHHHHHHHhhc
Confidence 4444 5677888886 588899999999999982222222 346678888855 679999999999999998
Q ss_pred cCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhc-----CCCCHH
Q 048757 515 HGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSC-----SSSSQG 589 (864)
Q Consensus 515 ~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~-----~~~~~~ 589 (864)
... .++.- .+++..+-.+|+++|+.+++.|..++-.+...+-. ...++.+..++... -.+.|.
T Consensus 180 ~S~-D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~~v~~l~~~~~~~~ 247 (265)
T 3b2a_A 180 SSA-DSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISRIVDGLVYREGAPI 247 (265)
T ss_dssp GCS-SCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHHHHHHGGGCSSCHH
T ss_pred ccC-CHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHHHHHHHHHhcCChh
Confidence 643 22222 23445677889999999999999999998776421 23344444433210 125677
Q ss_pred HHHHHHHH
Q 048757 590 LQERAAGA 597 (864)
Q Consensus 590 v~~~A~~a 597 (864)
++..|-.+
T Consensus 248 ~~~ka~~v 255 (265)
T 3b2a_A 248 IRLKAKKV 255 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665443
No 182
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.12 E-value=1.9e-07 Score=99.82 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=118.0
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEE
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILH 86 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~ 86 (864)
+.++.|+|+++.+..- .......+++|++|+++++... .+.....++|++|+++++. ++.... .....+++|++|+
T Consensus 78 ~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 78 QHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNR-IRKVPK-GVFSGLRNMNCIE 153 (332)
T ss_dssp TTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCCC-SCCSSCCTTCCEEECCSSC-CCCCCS-GGGSSCSSCCEEE
T ss_pred CCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcCC-ccCccccccCCEEECCCCc-cCccCH-hHhCCCccCCEEE
Confidence 4578888888765421 1122356788888888887533 1221223677777777765 332111 1124567777777
Q ss_pred eccCCCCCCCHHHHHH--------------------HH-hcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCC
Q 048757 87 FGLDVCDRISSDAIKT--------------------VA-YCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSG 145 (864)
Q Consensus 87 l~~~~c~~i~~~~l~~--------------------l~-~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~ 145 (864)
+ +++. +++.++.. +. ...++|++|+++++. ++...... ...+++|++|++++|.
T Consensus 154 l--~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~-l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 154 M--GGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK-IQAIELED-LLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp C--CSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSC-CCCCCTTS-STTCTTCSCCBCCSSC
T ss_pred C--CCCc-cccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCc-CCccCHHH-hcCCCCCCEEECCCCc
Confidence 7 4442 32111000 00 012567778887775 44322122 2458999999999975
Q ss_pred C--CCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCC---CCCHHHHHHH--hcCCCCCcEEEccCCC
Q 048757 146 G--VDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRT---NINLSSVTRL--LSSSRNLKVLIALNCP 218 (864)
Q Consensus 146 ~--i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~---~~~~~~l~~~--~~~~~~L~~L~~~~c~ 218 (864)
- +....+..+++|++|++++|. ++ .+......+++|+.|+++++ ..+...+... ....+.|+.|++.+++
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNK-LS--RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSC-CC--BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred CCcCChhHhhCCCCCCEEECCCCc-Ce--ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 2 223346689999999999984 44 12222357999999999983 3333222111 0114678999999998
Q ss_pred Cc
Q 048757 219 VF 220 (864)
Q Consensus 219 ~~ 220 (864)
..
T Consensus 306 ~~ 307 (332)
T 2ft3_A 306 VP 307 (332)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 183
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.12 E-value=8.9e-08 Score=99.32 Aligned_cols=177 Identities=13% Similarity=0.051 Sum_probs=109.6
Q ss_pred CCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 32 TNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 32 ~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
++|++|+++++..... .....+++|++|++++|. ++..... ....+++|++|++ +++. ++..... ....+++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L--~~n~-l~~~~~~-~~~~l~~ 101 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLIL--TGNP-IQSLALG-AFSGLSS 101 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTT-TTTTCTTCCEEEC--TTCC-CCEECTT-TTTTCTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHH-HccCCcCCCEEEC--CCCc-cCccChh-hhcCCcc
Confidence 4599999999864321 112278999999999986 5432111 1246899999999 6553 4322111 2246899
Q ss_pred cCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCC---HHHhcCCCCcCEEEEeCCCCCCH---HHHHHHHhcCCC
Q 048757 110 LRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVD---EAALENLSSVRYLSIAGTRNLNW---SSAAIAWSKLTS 183 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~---~~~~~~~~~L~~L~l~~c~~~~~---~~l~~l~~~~~~ 183 (864)
|++|+++++. ++.-.-.. ..++++|++|+++++..-+ ...+.++++|++|++++|. ++. ..+..+ ..++.
T Consensus 102 L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L~~ 177 (276)
T 2z62_A 102 LQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL-HQMPL 177 (276)
T ss_dssp CCEEECTTSC-CCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH-HTCTT
T ss_pred ccEEECCCCC-ccccCchh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhh-hhccc
Confidence 9999999986 43311111 3468999999999975322 3456689999999999985 332 233333 24555
Q ss_pred Cc-EEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 184 LV-GLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 184 L~-~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
|. .|+++++..+.. ........+|+.|++++|..-
T Consensus 178 l~l~L~ls~n~l~~~--~~~~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 178 LNLSLDLSLNPMNFI--QPGAFKEIRLKELALDTNQLK 213 (276)
T ss_dssp CCEEEECCSSCCCEE--CTTSSCSCCEEEEECCSSCCS
T ss_pred cceeeecCCCccccc--CccccCCCcccEEECCCCcee
Confidence 54 788887333210 001112246888888877643
No 184
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.09 E-value=2.1e-05 Score=79.37 Aligned_cols=181 Identities=12% Similarity=0.003 Sum_probs=131.3
Q ss_pred HHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCChh-hHH
Q 048757 488 ALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTF-SKHEGVRQEAAGALWNLSFDDR-NRE 565 (864)
Q Consensus 488 ~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~~~-~~~ 565 (864)
.+.+.+.+ .+...|..++.+|..+....+... ... -...++.|...+. +.+..++..|+.++..|+..-. .-.
T Consensus 19 ~l~~~l~s-~~w~~R~~a~~~L~~l~~~~~~~~--~~~--~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 19 DFYDKLEE-KKWTLRKESLEVLEKLLTDHPKLE--NGE--YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp THHHHHTC-SSHHHHHHHHHHHHHHHHHCSSBC--CCC--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHhhhcc-CCHHHHHHHHHHHHHHHccCCCCC--CCC--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH
Confidence 46677776 468899999999999987511110 111 1356788888894 9999999999999999985421 111
Q ss_pred HHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-
Q 048757 566 AIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF- 644 (864)
Q Consensus 566 ~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~- 644 (864)
... ...++.++..+.+ .++.+|..|..+|..+...... ...++.+...++++++.++..++..|..+..
T Consensus 94 ~~~-~~ilp~ll~~l~d---~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 94 NYA-SACVPSLLEKFKE---KKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp HHH-HHHHHHHHHGGGC---CCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 111 2367888888886 8899999999999988765322 1256778888999999999999999999654
Q ss_pred C-cc-cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 645 N-PG-NALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 645 ~-~~-~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
. +. .-.... ...+|.|+.++.+++ +.+|..|..+++.+.
T Consensus 164 ~~~~~~~~~~l-~~l~p~l~~~l~D~~-~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 164 TQPTALNKKLL-KLLTTSLVKTLNEPD-PTVRDSSAEALGTLI 204 (242)
T ss_dssp CCGGGCCHHHH-HHHHHHHHHHHTSSC-HHHHHHHHHHHHHHH
T ss_pred cCCCCccHHHH-HHHHHHHHHHhcCCC-hHHHHHHHHHHHHHH
Confidence 3 22 111222 257889999998886 889999999998765
No 185
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.08 E-value=3.4e-07 Score=93.33 Aligned_cols=169 Identities=15% Similarity=0.169 Sum_probs=111.5
Q ss_pred CCCeecCCCCCCCHHHHHHHHh-cCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcce
Q 048757 8 LWSSLDLRPYKFDTSAAESLSS-RCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEI 84 (864)
Q Consensus 8 lw~~ldL~~~~~~~~~l~~i~~-~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~ 84 (864)
.|+.+|+++..+.. +.. -.++++.|+++++..... -....+++|++|+++++. ++.... .....+++|++
T Consensus 15 ~~~~l~~~~~~l~~-----~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSLDS-----VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSA-GVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTTCCCSS-----CCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCeEEecCCCCccc-----cCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCH-hHhccCCcCCE
Confidence 46788888765532 212 235699999999864322 111278999999999986 543211 11246899999
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEE
Q 048757 85 LHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYL 161 (864)
Q Consensus 85 L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L 161 (864)
|++ +++ .++... ......+++|++|+++++. ++.-. ......+++|++|+++++. ++. ..+..+++|++|
T Consensus 88 L~L--~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 88 LGL--ANN-QLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLP-SGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp EEC--TTS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EEC--CCC-cccccC-hhHhcccCCCCEEEcCCCc-CCCcC-hhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEE
Confidence 999 655 344211 1123468999999999986 55211 1223568999999999974 443 345588999999
Q ss_pred EEeCCCCCCHHHHHHHHhcCCCCcEEecCCC
Q 048757 162 SIAGTRNLNWSSAAIAWSKLTSLVGLDTSRT 192 (864)
Q Consensus 162 ~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~ 192 (864)
+++++. ++... ......+++|+.|+++++
T Consensus 161 ~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 161 SLSTNQ-LQSVP-HGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp ECCSSC-CSCCC-TTTTTTCTTCCEEECCSC
T ss_pred ECCCCc-CCccC-HHHHhCCCCCCEEEeeCC
Confidence 999974 33211 122357899999999993
No 186
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.06 E-value=6.3e-07 Score=85.73 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHh
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
.+++|++|++++|. ++. +..+...+++|++|++ ++| .+++ +. ....+++|++|+++++. ++.- ...+..
T Consensus 17 ~~~~L~~L~l~~n~-l~~--i~~~~~~~~~L~~L~L--s~N-~l~~--~~-~l~~l~~L~~L~Ls~N~-l~~~-~~~~~~ 85 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPV--IENLGATLDQFDAIDF--SDN-EIRK--LD-GFPLLRRLKTLLVNNNR-ICRI-GEGLDQ 85 (176)
T ss_dssp CTTSCEEEECTTSC-CCS--CCCGGGGTTCCSEEEC--CSS-CCCE--EC-CCCCCSSCCEEECCSSC-CCEE-CSCHHH
T ss_pred CcCCceEEEeeCCC-Cch--hHHhhhcCCCCCEEEC--CCC-CCCc--cc-ccccCCCCCEEECCCCc-cccc-Ccchhh
Confidence 34555555555553 332 1222333446666666 444 2332 11 12346667777777765 4421 012234
Q ss_pred cCCCccEEeccCCCCCCHH----HhcCCCCcCEEEEeCCCCCCHH-HHHHHHhcCCCCcEEecCCC
Q 048757 132 QCRQLVEVGFIDSGGVDEA----ALENLSSVRYLSIAGTRNLNWS-SAAIAWSKLTSLVGLDTSRT 192 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~~----~~~~~~~L~~L~l~~c~~~~~~-~l~~l~~~~~~L~~L~l~~~ 192 (864)
.+++|++|++++|. +++. .+..+++|++|++++|.-.+.. .-..+...+|+|+.||+++.
T Consensus 86 ~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 86 ALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 56777777777754 3321 2336777777777766421111 11123345677777777663
No 187
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.04 E-value=0.00049 Score=62.52 Aligned_cols=216 Identities=14% Similarity=0.092 Sum_probs=158.4
Q ss_pred HhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC-CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC
Q 048757 396 SENGGIDILADLARSTNRLVAEEVVGGLWNLSV-GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADD 474 (864)
Q Consensus 396 ~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~ 474 (864)
.+...+..++.+|.++--.|+.+|...+..++. .++..+- .+..|+.++++ +....+....+++++.++...
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~k--sEaIpltqeIa~a~G~la~i~ 101 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKK--SEAIPLTQEIAKAFGQMAKEK 101 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHH--CCSHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhh--cccCchHHHHHHHHhHHHHhC
Confidence 345567788899988777899999999999986 4444333 45567777775 677777778888888887543
Q ss_pred cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHH
Q 048757 475 KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGAL 554 (864)
Q Consensus 475 ~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 554 (864)
+ .++ .+.+|.+..-.+-+ ++.++.+...+|..++.. +|..- .+++..+..++.++|..-+..|...+
T Consensus 102 P---e~v-~~vVp~lfanyrig-d~kikIn~~yaLeeIara---nP~l~-----~~v~rdi~smltskd~~Dkl~aLnFi 168 (253)
T 2db0_A 102 P---ELV-KSMIPVLFANYRIG-DEKTKINVSYALEEIAKA---NPMLM-----ASIVRDFMSMLSSKNREDKLTALNFI 168 (253)
T ss_dssp H---HHH-HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHH---CHHHH-----HHHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred H---HHH-HhhHHHHHHHHhcC-CccceecHHHHHHHHHHh---ChHHH-----HHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 3 111 13455555555555 589999999999999985 44322 24567788899999988888888888
Q ss_pred HHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHH
Q 048757 555 WNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHE 633 (864)
Q Consensus 555 ~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~ 633 (864)
..+..+.. .-+ ...+|.|..+|.+ .+.-+|..|+.+|.+++.. +..|..+.+ -+.-+++.++.|+.
T Consensus 169 ~alGen~~---~yv-~PfLprL~aLL~D---~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~ 235 (253)
T 2db0_A 169 EAMGENSF---KYV-NPFLPRIINLLHD---GDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNK 235 (253)
T ss_dssp HTCCTTTH---HHH-GGGHHHHHGGGGC---SSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHH
T ss_pred HHHhccCc---ccc-CcchHHHHHHHcC---cchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHH
Confidence 88765521 111 3478999999997 9999999999999999975 666655433 45666788899999
Q ss_pred HHHHHHHHhcC
Q 048757 634 TAAGALWNLAF 644 (864)
Q Consensus 634 ~a~~aL~~L~~ 644 (864)
.+..+|..+..
T Consensus 236 ~V~egL~rl~l 246 (253)
T 2db0_A 236 TVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988863
No 188
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.03 E-value=2.2e-05 Score=75.00 Aligned_cols=119 Identities=10% Similarity=0.192 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCCCcEEEecCC-CCchH----HHH--hCCcccceeeeecCCCCCHHHHHHHH---hCCCCcceEEeccCC
Q 048757 22 SAAESLSSRCTNLQALWFRGA-LSADA----MII--LQARRLREINVEFCRELTDAIFSAIV---ARHEMLEILHFGLDV 91 (864)
Q Consensus 22 ~~l~~i~~~~~~L~~L~l~~~-~~~~~----l~~--~~~~~L~~L~l~~c~~l~d~~l~~l~---~~~~~L~~L~l~~~~ 91 (864)
+.+..+...-+.|++|+|+++ ..-+. +.. ..-..|++|+|++|. ++|.+...++ ..-+.|++|+| +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L--~- 106 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNV--E- 106 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEEC--C-
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEec--C-
Confidence 477888788888999999986 33332 222 267789999999997 9999987765 34688999999 5
Q ss_pred CCCCCHHHHHHHHhcC---cCcCeeeecccC--CCcHHHHHHHH---hcCCCccEEeccCC
Q 048757 92 CDRISSDAIKTVAYCC---PKLRRLWLSGVR--EVNGDAINALA---KQCRQLVEVGFIDS 144 (864)
Q Consensus 92 c~~i~~~~l~~l~~~~---~~L~~L~l~~~~--~l~~~~l~~l~---~~~~~L~~L~l~~c 144 (864)
...|++.|...++..+ +.|++|+|+++. .+.+.+-.+|+ +.-+.|++|+++.+
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 5579999999998654 469999998753 47887655554 34577888888653
No 189
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.02 E-value=5.4e-05 Score=79.55 Aligned_cols=278 Identities=14% Similarity=-0.010 Sum_probs=159.0
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048757 358 GGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIA 437 (864)
Q Consensus 358 ~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~ 437 (864)
.....+++++.++|...++..--.+.+++..++-. + =++..|.+=+.++++.++-.|+++|+++...+- .
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~--i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-----~ 137 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV--I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTM-----L 137 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG--G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-----H
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH--H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-----H
Confidence 34566788999999999999988888888763211 1 246677888889999999999999999986542 1
Q ss_pred hhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCC
Q 048757 438 RAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGD 517 (864)
Q Consensus 438 ~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~ 517 (864)
+ ...+.+.+.+. +.++-|+..|+-+...|....+. ++ .+.+..+-+++.+ +++.++.+|..+|..+..++
T Consensus 138 ~-~l~~~lk~~L~---d~~pyVRk~A~l~~~kL~~~~pe---~v-~~~~~~l~~ll~d-~n~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 138 Q-AIERYMKQAIV---DKVPSVSSSALVSSLHLLKCSFD---VV-KRWVNEAQEAASS-DNIMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp H-HHHHHHHHHHT---CSSHHHHHHHHHHHHHHTTTCHH---HH-HTTHHHHHHHTTC-SSHHHHHHHHHHHHHHHTTC-
T ss_pred H-HHHHHHHHHcC---CCCHHHHHHHHHHHHHHhccCHH---HH-HHHHHHHHHHhcC-CCccHHHHHHHHHHHHHhhc-
Confidence 1 13445566664 58899999999999998765442 22 3688888888887 57899999999999998631
Q ss_pred CCcccchhhhccChHHHHHHHhcCC---CHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHH
Q 048757 518 SNSNNAAVGLETGALEALVQLTFSK---HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 518 ~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
..++..|+..+... ++-.+..-.+.+..+...++.. .....++.+...|++ .++.|...|
T Consensus 208 -----------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~---~~~aVvyEa 270 (355)
T 3tjz_B 208 -----------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRN---KHEMVVYEA 270 (355)
T ss_dssp -----------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCC---SSHHHHHHH
T ss_pred -----------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcC---CChHHHHHH
Confidence 12455566655442 4555555555554544332110 122345555556664 789999999
Q ss_pred HHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHH
Q 048757 595 AGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMAR 674 (864)
Q Consensus 595 ~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r 674 (864)
+.++..+...+.. . ...++.+|..+|.+++++++..|+..|..+....+... ...-..+.+++.+++ ..+.
T Consensus 271 ~k~I~~l~~~~~~---~-~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v----~~~n~~ie~li~d~n-~sI~ 341 (355)
T 3tjz_B 271 ASAIVNLPGCSAK---E-LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAV----TACNLDLENLVTDAN-RSIA 341 (355)
T ss_dssp HHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------
T ss_pred HHHHHhccCCCHH---H-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHH----HHHHHHHHHHccCCc-HhHH
Confidence 9999988653211 1 13456778888999999999999999999987333211 123446778888876 5566
Q ss_pred HHHHHHH
Q 048757 675 FMAALAL 681 (864)
Q Consensus 675 ~~aa~aL 681 (864)
..|..+|
T Consensus 342 t~Aittl 348 (355)
T 3tjz_B 342 TLAITTL 348 (355)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 6666555
No 190
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.02 E-value=1.2e-06 Score=102.19 Aligned_cols=86 Identities=13% Similarity=0.138 Sum_probs=45.2
Q ss_pred cCCCccEEeccCCCCCC--HHHhcCCCCcCEEEEeCCCCCCH-HHHHHHHh-----cCCCCcEEecCCCCCCHHHHHH--
Q 048757 132 QCRQLVEVGFIDSGGVD--EAALENLSSVRYLSIAGTRNLNW-SSAAIAWS-----KLTSLVGLDTSRTNINLSSVTR-- 201 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~--~~~~~~~~~L~~L~l~~c~~~~~-~~l~~l~~-----~~~~L~~L~l~~~~~~~~~l~~-- 201 (864)
++++|++|++++|.... ...+.++++|++|++++|..++. .....+.. .+++|+.|+++++..+ .+..
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~ 324 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVET 324 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchh
Confidence 46666666666664322 22334666666666666654554 22222221 2366666666664333 2222
Q ss_pred HhcCCCCCcEEEccCCCC
Q 048757 202 LLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 202 ~~~~~~~L~~L~~~~c~~ 219 (864)
.+..+++|+.|++.+|..
T Consensus 325 ~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp HHTTCTTCCEEECCSCCC
T ss_pred hhccCCCCCEEeCcCCcC
Confidence 344556666666666653
No 191
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.01 E-value=0.00047 Score=65.67 Aligned_cols=184 Identities=16% Similarity=0.088 Sum_probs=139.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-c
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVD-S 389 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~ 389 (864)
+..|.++|.+.|+.++.++..+|..+...-+.- .....-...++.++.++++.|+.+...|+++|..|-.+ |
T Consensus 35 l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~-------l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 35 LFLILELAGEDDETTRLRAFVALGEILKRADSD-------LRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHH-------HHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-------ccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence 567999999999999999999999987653221 23344467899999999999999999999999998774 3
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALAN 469 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~ 469 (864)
-....+. ..+..|..+++++++-+++.++..|+.+...... .+.+..+.+++. |.+..++..+.+++.+
T Consensus 108 L~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~---Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 108 MGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVV---SPDLYTKVAGFCLFLN 176 (265)
T ss_dssp BCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred CCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 2222232 2356788888999999999999999999433222 235677888884 7899999999999999
Q ss_pred hcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 470 LAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 470 L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
++...+.... -.+.+.-+-.++++. ++.+++.|+.++..+.+.
T Consensus 177 ia~~S~D~~i--~~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 177 MLNSSADSGH--LTLILDEIPSLLQND-NEFIVELALDVLEKALSF 219 (265)
T ss_dssp HGGGCSSCCC--GGGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTS
T ss_pred hhcccCCHHH--HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence 9875432211 122344466677775 799999999999999985
No 192
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.01 E-value=7.7e-05 Score=75.23 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=133.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh-cCCCHHHHHHHHHHHHHHhCC--c
Q 048757 313 LLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA-RSPPEGLQSEVAKAIANLSVD--S 389 (864)
Q Consensus 313 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~~~~~a~~~L~~L~~~--~ 389 (864)
.+.+.+++.+...|..|+..|..+..+.......+ . ...++.|...+ ++.+..++..|+.+++.|+.. +
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~--~------~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~ 90 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE--Y------GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK 90 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC--C------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC--H------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence 47788899999999999999999886632211000 0 13466788888 499999999999999999863 2
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHH
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALAN 469 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~ 469 (864)
..... -...++.++..+++.++.+++.+..+|..+...... ...++.+...+. +.+..++..++..|..
T Consensus 91 ~~~~~--~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~---~~~~~vr~~~l~~l~~ 159 (242)
T 2qk2_A 91 RFSNY--ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLS---NKNPSVKSETALFIAR 159 (242)
T ss_dssp GGHHH--HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTT---CSCHHHHHHHHHHHHH
T ss_pred hHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHc---CCChHHHHHHHHHHHH
Confidence 22111 123588899999999999999999999999764321 124666777775 4688999999999999
Q ss_pred hcCCC--c--chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhc
Q 048757 470 LAADD--K--CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 470 L~~~~--~--~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~ 515 (864)
+.... + ....+ ...++.|+.++.+ +.+++|..|..++..++..
T Consensus 160 ~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 160 ALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence 65442 1 12222 3568899999987 4689999999999999863
No 193
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.00 E-value=1.3e-06 Score=99.35 Aligned_cols=15 Identities=13% Similarity=0.056 Sum_probs=8.0
Q ss_pred CCCCcEEEccCCCCc
Q 048757 206 SRNLKVLIALNCPVF 220 (864)
Q Consensus 206 ~~~L~~L~~~~c~~~ 220 (864)
+++|+.|++++|+..
T Consensus 229 l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 229 LDPTCTIILEDNPLS 243 (571)
T ss_dssp SCTTEEEECCSSSCC
T ss_pred CCCCCEEEeeCCcCC
Confidence 455555555555543
No 194
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.97 E-value=6.3e-06 Score=91.73 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=33.0
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceE
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEIL 85 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L 85 (864)
|+..+.||++++.+.. +...+++|++|+++++.... +.. ..++|++|++++|. ++. +.. ...+++|++|
T Consensus 90 ~~~L~~L~l~~n~l~~-----lp~~~~~L~~L~l~~n~l~~-l~~-~~~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L 158 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-----LPELPQSLKSLLVDNNNLKA-LSD-LPPLLEYLGVSNNQ-LEK--LPE-LQNSSFLKII 158 (454)
T ss_dssp CTTCSEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSC-CCS-CCTTCCEEECCSSC-CSS--CCC-CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCc-----cccccCCCcEEECCCCccCc-ccC-CCCCCCEEECcCCC-CCC--Ccc-cCCCCCCCEE
Confidence 4556667766655432 11233556666666653221 110 11456666665554 332 111 2345555555
Q ss_pred Ee
Q 048757 86 HF 87 (864)
Q Consensus 86 ~l 87 (864)
++
T Consensus 159 ~l 160 (454)
T 1jl5_A 159 DV 160 (454)
T ss_dssp EC
T ss_pred EC
Confidence 55
No 195
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.95 E-value=4.4e-06 Score=93.01 Aligned_cols=177 Identities=14% Similarity=0.067 Sum_probs=101.3
Q ss_pred CCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEec
Q 048757 9 WSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFG 88 (864)
Q Consensus 9 w~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~ 88 (864)
++.||++++.+.. +....++|++|+++++.... +. ...++|++|+++++. ++. +....++|++|++
T Consensus 73 l~~L~l~~~~l~~-----lp~~~~~L~~L~l~~n~l~~-lp-~~~~~L~~L~l~~n~-l~~-----l~~~~~~L~~L~L- 138 (454)
T 1jl5_A 73 AHELELNNLGLSS-----LPELPPHLESLVASCNSLTE-LP-ELPQSLKSLLVDNNN-LKA-----LSDLPPLLEYLGV- 138 (454)
T ss_dssp CSEEECTTSCCSC-----CCSCCTTCSEEECCSSCCSS-CC-CCCTTCCEEECCSSC-CSC-----CCSCCTTCCEEEC-
T ss_pred CCEEEecCCcccc-----CCCCcCCCCEEEccCCcCCc-cc-cccCCCcEEECCCCc-cCc-----ccCCCCCCCEEEC-
Confidence 4667777765432 11224678888888875433 22 245789999998875 432 1122368999999
Q ss_pred cCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCC
Q 048757 89 LDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRN 168 (864)
Q Consensus 89 ~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~ 168 (864)
++| .++. +.. ...+++|++|+++++. ++. +....++|++|++++|.--.-..+.++++|++|++++|.
T Consensus 139 -~~n-~l~~--lp~-~~~l~~L~~L~l~~N~-l~~-----lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~- 206 (454)
T 1jl5_A 139 -SNN-QLEK--LPE-LQNSSFLKIIDVDNNS-LKK-----LPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS- 206 (454)
T ss_dssp -CSS-CCSS--CCC-CTTCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-
T ss_pred -cCC-CCCC--Ccc-cCCCCCCCEEECCCCc-Ccc-----cCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-
Confidence 655 3442 333 3568889999998886 542 122345788888887642221234467777777777764
Q ss_pred CCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 169 LNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 169 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
++. +....++|+.|+++++... .+. .+..+++|+.|++.+|..
T Consensus 207 l~~-----l~~~~~~L~~L~l~~n~l~--~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 207 LKK-----LPDLPLSLESIVAGNNILE--ELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CSS-----CCCCCTTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCC
T ss_pred CCc-----CCCCcCcccEEECcCCcCC--ccc-ccCCCCCCCEEECCCCcC
Confidence 221 1112245666666663222 111 134455666666666543
No 196
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=2.8e-07 Score=105.37 Aligned_cols=81 Identities=21% Similarity=0.119 Sum_probs=35.6
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHH-HHHHHhcCCCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSS-AAIAWSKLTSL 184 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~-l~~l~~~~~~L 184 (864)
.+++|+.|+++++. ++ .+..-..++++|++|+|+++.--+-.++.++++|++|+++++. ++... ... ...+++|
T Consensus 461 ~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~-l~~l~~L 535 (567)
T 1dce_A 461 QLLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR-LQQSAAIQP-LVSCPRL 535 (567)
T ss_dssp GGTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGG-GGGCTTC
T ss_pred ccccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC-CCCCCCcHH-HhcCCCC
Confidence 45555555555554 33 1211223455555555555432111133355555555555542 22111 111 2345555
Q ss_pred cEEecCC
Q 048757 185 VGLDTSR 191 (864)
Q Consensus 185 ~~L~l~~ 191 (864)
+.|++++
T Consensus 536 ~~L~L~~ 542 (567)
T 1dce_A 536 VLLNLQG 542 (567)
T ss_dssp CEEECTT
T ss_pred CEEEecC
Confidence 5555555
No 197
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.92 E-value=7.4e-07 Score=87.92 Aligned_cols=148 Identities=11% Similarity=0.135 Sum_probs=78.0
Q ss_pred CCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcce
Q 048757 7 CLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLEI 84 (864)
Q Consensus 7 ~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~ 84 (864)
+.|+.++.++.....-. ....++|++|+++++..... -....+++|++|+++++. ++... ......+++|++
T Consensus 7 C~~~~v~c~~~~l~~~p----~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~ 80 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVP----TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLP-NGVFNKLTSLTY 80 (208)
T ss_dssp EETTEEECCSSCCSSCC----SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCE
T ss_pred ECCCEEEecCCCccCCC----CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccC-hhhcCCCCCcCE
Confidence 45888888765432100 11245688888888753321 111267788888888765 43211 111234677777
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCC---HHHhcCCCCcCEE
Q 048757 85 LHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVD---EAALENLSSVRYL 161 (864)
Q Consensus 85 L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~---~~~~~~~~~L~~L 161 (864)
|++ +++ .++... ......+++|++|+++++. ++.-. .....++++|++|+++++. ++ ...+..+++|++|
T Consensus 81 L~L--s~n-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 81 LNL--STN-QLQSLP-NGVFDKLTQLKELALNTNQ-LQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp EEC--CSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred EEC--CCC-cCCccC-HhHhcCccCCCEEEcCCCc-CcccC-HhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEE
Confidence 777 544 233110 0112356677777777665 43211 1122346677777777653 22 2223356667777
Q ss_pred EEeCCC
Q 048757 162 SIAGTR 167 (864)
Q Consensus 162 ~l~~c~ 167 (864)
+++++.
T Consensus 154 ~l~~N~ 159 (208)
T 2o6s_A 154 WLHDNP 159 (208)
T ss_dssp ECCSCC
T ss_pred EecCCC
Confidence 776653
No 198
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.90 E-value=0.0023 Score=58.25 Aligned_cols=212 Identities=13% Similarity=0.061 Sum_probs=148.0
Q ss_pred hhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcC
Q 048757 438 RAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHG 516 (864)
Q Consensus 438 ~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~ 516 (864)
+...+..++.+|. ++--.|+.+|..++.+++...+ .... .+..|+-+++.+.........+++++.++..
T Consensus 30 d~~~l~~lI~~LD---DDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i- 100 (253)
T 2db0_A 30 DESVLKKLIELLD---DDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE- 100 (253)
T ss_dssp CHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHhc---cHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHh-
Confidence 4457788888885 3445799999999999987644 3332 2556777777655667777888999999874
Q ss_pred CCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHH
Q 048757 517 DSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVRSCSSSSQGLQERAA 595 (864)
Q Consensus 517 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~ 595 (864)
+|+.. .+.+|.+..-..-.+++++.+...+|..++.. |..-. +.+..+..++.+ ++..-+..|+
T Consensus 101 --~Pe~v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smlts---kd~~Dkl~aL 165 (253)
T 2db0_A 101 --KPELV-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSS---KNREDKLTAL 165 (253)
T ss_dssp --CHHHH-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSC---SSHHHHHHHH
T ss_pred --CHHHH-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcC---CChHHHHHHH
Confidence 33221 14567777777778999999999999988664 33322 234566677775 7777788888
Q ss_pred HHHHHhccCc-hhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC-CcccHHHHHhCCcHHHHHHHhcCCCcHHH
Q 048757 596 GALWGLSLSE-ANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF-NPGNALCIVEGGGVQALIHLCSSSLSKMA 673 (864)
Q Consensus 596 ~aL~~L~~~~-~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g~v~~L~~ll~~~~~~~~ 673 (864)
..+..+..+. .+ -...+|.|..+|.+.++-||..|+.+|.+++. ++..|..+. .-++-+.+. ++.+
T Consensus 166 nFi~alGen~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~-S~lv 233 (253)
T 2db0_A 166 NFIEAMGENSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDT-SSLV 233 (253)
T ss_dssp HHHHTCCTTTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCS-CHHH
T ss_pred HHHHHHhccCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCc-HHHH
Confidence 8887666542 21 12368999999999999999999999999997 555443332 333334444 4677
Q ss_pred HHHHHHHHHHhh
Q 048757 674 RFMAALALAYIV 685 (864)
Q Consensus 674 r~~aa~aL~~l~ 685 (864)
+...-.+|+.+.
T Consensus 234 ~~~V~egL~rl~ 245 (253)
T 2db0_A 234 NKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
No 199
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.89 E-value=1.7e-06 Score=86.78 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=38.3
Q ss_pred CCCCCCeecCCCCCCCHHHHHHHH-hcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCC
Q 048757 5 SPCLWSSLDLRPYKFDTSAAESLS-SRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEM 81 (864)
Q Consensus 5 ~p~lw~~ldL~~~~~~~~~l~~i~-~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~ 81 (864)
..+.|+.+|.++..+.. +. .-.++|++|+++++..... -....+++|++|+++++. ++.... .....+++
T Consensus 17 ~~Cs~~~v~c~~~~l~~-----ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~-~~~~~l~~ 89 (229)
T 3e6j_A 17 CSCSGTTVDCRSKRHAS-----VPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPV-GVFDSLTQ 89 (229)
T ss_dssp CEEETTEEECTTSCCSS-----CCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred CEEeCCEeEccCCCcCc-----cCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcCh-hhcccCCC
Confidence 34668888887664421 11 1235577777777653321 011256667777776664 321100 11133555
Q ss_pred cceEEe
Q 048757 82 LEILHF 87 (864)
Q Consensus 82 L~~L~l 87 (864)
|+.|+|
T Consensus 90 L~~L~L 95 (229)
T 3e6j_A 90 LTVLDL 95 (229)
T ss_dssp CCEEEC
T ss_pred cCEEEC
Confidence 666666
No 200
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.88 E-value=1.9e-06 Score=82.29 Aligned_cols=132 Identities=13% Similarity=0.026 Sum_probs=88.6
Q ss_pred CCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHH---hcC
Q 048757 78 RHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAA---LEN 154 (864)
Q Consensus 78 ~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~---~~~ 154 (864)
.+++|++|++ ++| .++. +..+...+|+|++|+++++. +++- . -...+++|++|++++|. ++... +..
T Consensus 17 ~~~~L~~L~l--~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~--~-~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDL--RGY-KIPV--IENLGATLDQFDAIDFSDNE-IRKL--D-GFPLLRRLKTLLVNNNR-ICRIGEGLDQA 86 (176)
T ss_dssp CTTSCEEEEC--TTS-CCCS--CCCGGGGTTCCSEEECCSSC-CCEE--C-CCCCCSSCCEEECCSSC-CCEECSCHHHH
T ss_pred CcCCceEEEe--eCC-CCch--hHHhhhcCCCCCEEECCCCC-CCcc--c-ccccCCCCCEEECCCCc-ccccCcchhhc
Confidence 4789999999 666 4542 34455556699999999987 6542 2 23458999999999975 55322 358
Q ss_pred CCCcCEEEEeCCCCCCHH-HHHHHHhcCCCCcEEecCCCCCC--HHHHHHHhcCCCCCcEEEccCCCCcc
Q 048757 155 LSSVRYLSIAGTRNLNWS-SAAIAWSKLTSLVGLDTSRTNIN--LSSVTRLLSSSRNLKVLIALNCPVFE 221 (864)
Q Consensus 155 ~~~L~~L~l~~c~~~~~~-~l~~l~~~~~~L~~L~l~~~~~~--~~~l~~~~~~~~~L~~L~~~~c~~~~ 221 (864)
+++|++|++++|. +++. .+..+ ..+++|+.|+++++..+ +......+..+++|+.|++.+++.-+
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCCEEECCCCc-CCcchhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8999999999875 4332 22223 47899999999983332 11111235566899999998876544
No 201
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.78 E-value=1.2e-06 Score=85.60 Aligned_cols=102 Identities=17% Similarity=0.275 Sum_probs=59.8
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHh
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
.+++|++|++++|. +++ +. ....+++|+.|++ ++| .++ .+......+++|++|++++|. ++. +..+.
T Consensus 46 ~l~~L~~L~ls~n~-l~~--l~-~~~~l~~L~~L~l--~~n-~l~--~l~~~~~~~~~L~~L~L~~N~-l~~--l~~~~- 112 (198)
T 1ds9_A 46 TLKACKHLALSTNN-IEK--IS-SLSGMENLRILSL--GRN-LIK--KIENLDAVADTLEELWISYNQ-IAS--LSGIE- 112 (198)
T ss_dssp HTTTCSEEECSEEE-ESC--CC-CHHHHTTCCEEEE--EEE-EEC--SCSSHHHHHHHCSEEEEEEEE-CCC--HHHHH-
T ss_pred cCCCCCEEECCCCC-Ccc--cc-ccccCCCCCEEEC--CCC-Ccc--cccchhhcCCcCCEEECcCCc-CCc--CCccc-
Confidence 67788888887765 433 11 2234677788877 444 233 122333445777777777775 543 23333
Q ss_pred cCCCccEEeccCCCCCCH-H---HhcCCCCcCEEEEeCCC
Q 048757 132 QCRQLVEVGFIDSGGVDE-A---ALENLSSVRYLSIAGTR 167 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~-~---~~~~~~~L~~L~l~~c~ 167 (864)
.+++|++|++++|. +++ . .+..+++|++|++++|.
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc
Confidence 36777777777764 332 1 23467777777777653
No 202
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.77 E-value=1.1e-06 Score=86.00 Aligned_cols=127 Identities=19% Similarity=0.167 Sum_probs=84.1
Q ss_pred hCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCC
Q 048757 77 ARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLS 156 (864)
Q Consensus 77 ~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~ 156 (864)
..+++|++|++ ++| .++. +.. ...+++|++|++++|. ++ .+......+++|++|++++|.--+-.++..++
T Consensus 45 ~~l~~L~~L~l--s~n-~l~~--l~~-~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~ 115 (198)
T 1ds9_A 45 STLKACKHLAL--STN-NIEK--ISS-LSGMENLRILSLGRNL-IK--KIENLDAVADTLEELWISYNQIASLSGIEKLV 115 (198)
T ss_dssp HHTTTCSEEEC--SEE-EESC--CCC-HHHHTTCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred hcCCCCCEEEC--CCC-CCcc--ccc-cccCCCCCEEECCCCC-cc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence 45789999999 655 3433 222 3457889999999886 55 23344455788999999987543334555888
Q ss_pred CcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCC---------HHHHHHHhcCCCCCcEEE
Q 048757 157 SVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNIN---------LSSVTRLLSSSRNLKVLI 213 (864)
Q Consensus 157 ~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~---------~~~l~~~~~~~~~L~~L~ 213 (864)
+|++|++++|.--+...+..+ ..+++|+.|+++++... .......+..+++|+.|+
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l-~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKL-AALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHH-TTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCEEECCCCcCCchhHHHHH-hcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999988753332333333 57899999999884321 122234466678899886
No 203
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.76 E-value=3.5e-06 Score=95.84 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=102.4
Q ss_pred HHHHH-HhcCCCCcEEEecCCCCchHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHH
Q 048757 23 AAESL-SSRCTNLQALWFRGALSADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIK 101 (864)
Q Consensus 23 ~l~~i-~~~~~~L~~L~l~~~~~~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~ 101 (864)
....+ ...+.+|+.|+++++.... ++..-+++|++|+++++. ++. +. ..+++|++|++ ++| .++. +.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-lp~~l~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~L--s~N-~l~~--ip 116 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS-LPDNLPPQITVLEITQNA-LIS--LP---ELPASLEYLDA--CDN-RLST--LP 116 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC-CCSCCCTTCSEEECCSSC-CSC--CC---CCCTTCCEEEC--CSS-CCSC--CC
T ss_pred hhhhccccccCCccEEEeCCCCCCc-cCHhHcCCCCEEECcCCC-Ccc--cc---cccCCCCEEEc--cCC-CCCC--cc
Confidence 34444 2334589999998885332 332235789999999886 552 22 45789999999 655 3443 22
Q ss_pred HHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcC
Q 048757 102 TVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKL 181 (864)
Q Consensus 102 ~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~ 181 (864)
. .+++|++|+++++. ++. +.. .+++|++|++++|. ++...- .+++|++|++++|. ++. +..+ .
T Consensus 117 ~---l~~~L~~L~Ls~N~-l~~--lp~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~-L~~--lp~l---~ 179 (571)
T 3cvr_A 117 E---LPASLKHLDVDNNQ-LTM--LPE---LPALLEYINADNNQ-LTMLPE-LPTSLEVLSVRNNQ-LTF--LPEL---P 179 (571)
T ss_dssp C---CCTTCCEEECCSSC-CSC--CCC---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSC-CSC--CCCC---C
T ss_pred h---hhcCCCEEECCCCc-CCC--CCC---cCccccEEeCCCCc-cCcCCC-cCCCcCEEECCCCC-CCC--cchh---h
Confidence 2 22389999999886 543 222 57889999999875 443111 67889999998875 332 1112 1
Q ss_pred CCCcEEecCCCCCCHHHHHHHh----cCCCCCcEEEccCCCCc
Q 048757 182 TSLVGLDTSRTNINLSSVTRLL----SSSRNLKVLIALNCPVF 220 (864)
Q Consensus 182 ~~L~~L~l~~~~~~~~~l~~~~----~~~~~L~~L~~~~c~~~ 220 (864)
++|+.|+++++..+ .+..+. ...+.|+.|++++|..-
T Consensus 180 ~~L~~L~Ls~N~L~--~lp~~~~~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 180 ESLEALDVSTNLLE--SLPAVPVRNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp TTCCEEECCSSCCS--SCCCCC--------CCEEEECCSSCCC
T ss_pred CCCCEEECcCCCCC--chhhHHHhhhcccccceEEecCCCcce
Confidence 78999999884433 111111 11123388888887644
No 204
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=3.2e-06 Score=89.95 Aligned_cols=91 Identities=12% Similarity=0.177 Sum_probs=63.5
Q ss_pred CcHHHHHHHHhcCCCccEEeccCC--CCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCc-EEecCC--CCCC
Q 048757 121 VNGDAINALAKQCRQLVEVGFIDS--GGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLV-GLDTSR--TNIN 195 (864)
Q Consensus 121 l~~~~l~~l~~~~~~L~~L~l~~c--~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~-~L~l~~--~~~~ 195 (864)
+.......+..+|++|++|+|+++ ..+.+..+.+|++|+.|++.+. ++.-+ .....+|++|+ .+++++ +.++
T Consensus 213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~-~~aF~~~~~L~~~l~l~~~l~~I~ 289 (329)
T 3sb4_A 213 LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIG-QRVFSNCGRLAGTLELPASVTAIE 289 (329)
T ss_dssp CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEEC-TTTTTTCTTCCEEEEECTTCCEEC
T ss_pred ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceeh-HHHhhCChhccEEEEEcccceEEc
Confidence 445556666677999999999984 3455666779999999999763 43211 12246899999 999987 3333
Q ss_pred HHHHHHHhcCCCCCcEEEccCCC
Q 048757 196 LSSVTRLLSSSRNLKVLIALNCP 218 (864)
Q Consensus 196 ~~~l~~~~~~~~~L~~L~~~~c~ 218 (864)
.. .+.+|++|+.+++.+..
T Consensus 290 ~~----aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 290 FG----AFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TT----TTTTCTTEEEEEECSSC
T ss_pred hh----hhhCCccCCEEEeCCCc
Confidence 22 35677899999985543
No 205
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.73 E-value=4.1e-06 Score=83.26 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=39.0
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCC---HHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVD---EAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLT 182 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~---~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~ 182 (864)
.+++|++|+++++. ++.-. ......+++|++|+++++. ++ ...+.++++|++|+++++. ++.... .....++
T Consensus 79 ~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~ 153 (220)
T 2v70_A 79 GASGVNEILLTSNR-LENVQ-HKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAP-GAFDTLH 153 (220)
T ss_dssp TCTTCCEEECCSSC-CCCCC-GGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSC-CCCBCT-TTTTTCT
T ss_pred CCCCCCEEECCCCc-cCccC-HhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCc-CCEECH-HHhcCCC
Confidence 34555555555554 32111 1112345666666666643 22 2233356666666666653 221111 1123566
Q ss_pred CCcEEecCC
Q 048757 183 SLVGLDTSR 191 (864)
Q Consensus 183 ~L~~L~l~~ 191 (864)
+|+.|++++
T Consensus 154 ~L~~L~L~~ 162 (220)
T 2v70_A 154 SLSTLNLLA 162 (220)
T ss_dssp TCCEEECCS
T ss_pred CCCEEEecC
Confidence 777777776
No 206
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.63 E-value=5.6e-06 Score=82.27 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=39.5
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTS 183 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~ 183 (864)
.+++|++|+++++. ++.- -..+..++++|++|+++++.- +....+..+++|++|+++++. ++... ......+++
T Consensus 78 ~l~~L~~L~Ls~N~-l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~ 153 (220)
T 2v9t_B 78 GLRSLNSLVLYGNK-ITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIA-KGTFSPLRA 153 (220)
T ss_dssp TCSSCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTT
T ss_pred CCcCCCEEECCCCc-CCcc-CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEEC-HHHHhCCCC
Confidence 34555555555554 3310 011223456666666666431 112233466666666666653 22111 111234667
Q ss_pred CcEEecCC
Q 048757 184 LVGLDTSR 191 (864)
Q Consensus 184 L~~L~l~~ 191 (864)
|+.|++++
T Consensus 154 L~~L~L~~ 161 (220)
T 2v9t_B 154 IQTMHLAQ 161 (220)
T ss_dssp CCEEECCS
T ss_pred CCEEEeCC
Confidence 77777776
No 207
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00025 Score=71.45 Aligned_cols=187 Identities=8% Similarity=0.016 Sum_probs=127.6
Q ss_pred HHHHHHccCchhHHHHHHHHHHH-HhhcCCCCcccchhhhc-cChHHHHHHHh-cCCCHHHHHHHHHHHHHhcCChh--h
Q 048757 489 LVMLARSFMFEGVQEQAARALAN-LVAHGDSNSNNAAVGLE-TGALEALVQLT-FSKHEGVRQEAAGALWNLSFDDR--N 563 (864)
Q Consensus 489 Lv~ll~~~~~~~v~~~a~~aL~~-L~~~~~~~~~~~~~~~~-~~~i~~L~~lL-~~~~~~v~~~a~~~L~~Ls~~~~--~ 563 (864)
+...+.+ ..+.-|..|+.+|.. +... .+.....-.+ ...+..|...+ ++.+..++..|+.+|..|+..-. .
T Consensus 21 f~~~l~s-~~w~eRk~al~~L~~~~~~~---~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 21 FQERITS-SKWKDRVEALEEFWDSVLSQ---TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHHTC-SSHHHHHHHHHHHHHHTGGG---CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHhhc-CCHHHHHHHHHHHHHHHHhc---CCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc
Confidence 4455666 457888999999999 8642 1111100011 24577888888 78999999999999999974311 1
Q ss_pred -H-HHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 048757 564 -R-EAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALW 640 (864)
Q Consensus 564 -~-~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 640 (864)
. .... ..++.+++.+++ ..+.++..+..++-.++.. ++....-.-...++.|+..|+++++.+++.++.+|.
T Consensus 97 f~~~y~~--~llp~ll~~l~d---kk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~ 171 (249)
T 2qk1_A 97 FSKDYVS--LVFTPLLDRTKE---KKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFN 171 (249)
T ss_dssp SCHHHHH--HHHHHHHHGGGC---CCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ccHHHHH--HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 1 1111 257778888876 7799999999998887653 211100001135677888899999999999999999
Q ss_pred HhcCCccc---HH-HHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 641 NLAFNPGN---AL-CIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 641 ~L~~~~~~---~~-~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
.+....+. +- .......+|.|..++.+++ +.+|..|..+++.+.
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~-~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ-PAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 99863332 11 2222578999999998886 889999999887654
No 208
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.001 Score=66.93 Aligned_cols=190 Identities=8% Similarity=0.027 Sum_probs=128.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-HhC-CchhHHHHHh-cCcHHHHHHHH-ccCCHHHHHHHHHHHHHhcC--C-CCcH-H
Q 048757 363 LLDLARSPPEGLQSEVAKAIAN-LSV-DSKVAKAVSE-NGGIDILADLA-RSTNRLVAEEVVGGLWNLSV--G-EDHK-G 434 (864)
Q Consensus 363 L~~lL~~~~~~~~~~a~~~L~~-L~~-~~~~~~~i~~-~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~Ls~--~-~~~~-~ 434 (864)
+.+.+.+.+...|..|+..|.. +.. .++....-.+ ...+..|.+.+ ++.+..++..|+.+|+.++. . +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 3456688999999999999999 864 3322100001 12366777788 78899999999999999985 2 3333 2
Q ss_pred HHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHh
Q 048757 435 AIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLV 513 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~ 513 (864)
.... .++.+++.+. +....|+..+..++..++..-+ ....-.-...++.|+..+++. ++.+++.++.+|..+.
T Consensus 101 y~~~--llp~ll~~l~---dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 101 YVSL--VFTPLLDRTK---EKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASM 174 (249)
T ss_dssp HHHH--HHHHHHHGGG---CCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence 2222 5677777775 4668899998888888875321 000000112466788888774 6899999999999998
Q ss_pred hcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 048757 514 AHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLS 558 (864)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls 558 (864)
......+..-........++.|.+++.+.++++|..|..++..+.
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 742111011111122578999999999999999999999999874
No 209
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.59 E-value=1.3e-05 Score=78.77 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=47.9
Q ss_pred CcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhc
Q 048757 53 ARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQ 132 (864)
Q Consensus 53 ~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~ 132 (864)
.++|++|+++++. ++... ......+++|++|++ +++ .++... ......+++|++|+++++. ++.-. ......
T Consensus 27 ~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l--~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~ 98 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLP-NGVFDELTSLTQLYL--GGN-KLQSLP-NGVFNKLTSLTYLNLSTNQ-LQSLP-NGVFDK 98 (208)
T ss_dssp CTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEEC--CSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTT
T ss_pred CCCCcEEEcCCCc-cCcCC-hhhhcccccCcEEEC--CCC-ccCccC-hhhcCCCCCcCEEECCCCc-CCccC-HhHhcC
Confidence 4567777777664 33211 111234566666666 433 232110 0112345666666666654 33110 111234
Q ss_pred CCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCC
Q 048757 133 CRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGT 166 (864)
Q Consensus 133 ~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c 166 (864)
+++|++|+++++. ++. ..+..+++|++|+++++
T Consensus 99 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 134 (208)
T 2o6s_A 99 LTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN 134 (208)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCC
Confidence 5566666666543 221 12235555555555554
No 210
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.52 E-value=0.0023 Score=76.00 Aligned_cols=296 Identities=11% Similarity=0.030 Sum_probs=186.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC----CcHHHHHh
Q 048757 363 LLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGE----DHKGAIAR 438 (864)
Q Consensus 363 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~----~~~~~i~~ 438 (864)
+++.+...+..-+..++..+.++...+..- .....+.++.|.+.+.+.... +.|+.++..|+... ..-..+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~- 94 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIE-HDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV- 94 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSS-SSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH-
T ss_pred HHhhccccchhHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH-
Confidence 555555544455567777787765532110 011125567777777654333 99999999998532 2222222
Q ss_pred hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCC-CcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCC
Q 048757 439 AGGIKALVDLIFKWSSWNDGVLERAAGALANLAAD-DKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGD 517 (864)
Q Consensus 439 ~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~-~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~ 517 (864)
+.++.+++... +....|+..|..+...+... ++... ...+|.|+..+.+......+..|+.++..|+..
T Consensus 95 -~~~~~~~~~~~---dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~-- 164 (986)
T 2iw3_A 95 -QLVPAICTNAG---NKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA-- 164 (986)
T ss_dssp -TTHHHHHHHTT---CSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--
T ss_pred -HHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH--
Confidence 35666666654 56778988888777766543 22111 345888999998754577888999999999973
Q ss_pred CCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHH
Q 048757 518 SNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGA 597 (864)
Q Consensus 518 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~a 597 (864)
.+ ......=...+|.+...+.+..++++..|..++..++.--.|+. =...+|.|++.+.+ ++ + ...++..
T Consensus 165 -~~-~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d---~~~~~~~~~~~~~~---p~-~-~~~~~~~ 234 (986)
T 2iw3_A 165 -AK-DQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKD---IERFIPSLIQCIAD---PT-E-VPETVHL 234 (986)
T ss_dssp -SH-HHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTT---TGGGHHHHHHHHHC---TT-H-HHHHHHH
T ss_pred -hH-HHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcc---hhhhHHHHHHHhcC---hh-h-hHHHHHH
Confidence 22 22223334678888899999999999999999988766332221 02468999999985 43 2 3334444
Q ss_pred HHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC---CcccHHHHHhCCcHHHHHHHhcCCCcHHHH
Q 048757 598 LWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF---NPGNALCIVEGGGVQALIHLCSSSLSKMAR 674 (864)
Q Consensus 598 L~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~---~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r 674 (864)
|+.-....+...-- -.=.+|.|.+-|+.....+++.++-...||+. +|.....+. ...+|.|......-..|++|
T Consensus 235 l~~~tfv~~v~~~~-l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r 312 (986)
T 2iw3_A 235 LGATTFVAEVTPAT-LSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAR 312 (986)
T ss_dssp HTTCCCCSCCCHHH-HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHH
T ss_pred hhcCeeEeeecchh-HHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHH
Confidence 44322211111000 00124666677778888999999999999998 333333333 46677777777766669999
Q ss_pred HHHHHHHHHh
Q 048757 675 FMAALALAYI 684 (864)
Q Consensus 675 ~~aa~aL~~l 684 (864)
..|..|+..+
T Consensus 313 ~~~~~a~~~l 322 (986)
T 2iw3_A 313 EVTLRALKTL 322 (986)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877766
No 211
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.51 E-value=7e-06 Score=96.07 Aligned_cols=13 Identities=15% Similarity=0.419 Sum_probs=5.9
Q ss_pred CCcccceeeeecC
Q 048757 52 QARRLREINVEFC 64 (864)
Q Consensus 52 ~~~~L~~L~l~~c 64 (864)
.+++|++|+|++|
T Consensus 74 ~l~~L~~L~Ls~N 86 (635)
T 4g8a_A 74 SFPELQVLDLSRC 86 (635)
T ss_dssp TCTTCCEEECTTC
T ss_pred CCCCCCEEECCCC
Confidence 3444444444444
No 212
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.51 E-value=1.2e-06 Score=102.75 Aligned_cols=131 Identities=16% Similarity=0.136 Sum_probs=74.6
Q ss_pred CCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcC
Q 048757 78 RHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALEN 154 (864)
Q Consensus 78 ~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~ 154 (864)
.+++++.+++ +.+. ++.. .......++.|+.|+++++...+ .........+++|++|+|++|. ++. ..+.+
T Consensus 443 ~l~~l~~l~l--s~n~-l~~~-~~~~~~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~~ 516 (635)
T 4g8a_A 443 SLRNLIYLDI--SHTH-TRVA-FNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNS 516 (635)
T ss_dssp TCTTCCEEEC--TTSC-CEEC-CTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSC-CCEECTTTTTT
T ss_pred cccccccccc--cccc-cccc-cccccccchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCc-cCCcChHHHcC
Confidence 4566666666 4332 1110 11123456788888888775221 1112233557888888888874 433 34558
Q ss_pred CCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCC---CCHHHHHHHhcCC-CCCcEEEccCCCCc
Q 048757 155 LSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTN---INLSSVTRLLSSS-RNLKVLIALNCPVF 220 (864)
Q Consensus 155 ~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~---~~~~~l~~~~~~~-~~L~~L~~~~c~~~ 220 (864)
+++|++|+++++. ++... ......+++|+.|++++.. ..+.. +..+ ++|+.|+++++|..
T Consensus 517 l~~L~~L~Ls~N~-l~~l~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~----l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 517 LSSLQVLNMSHNN-FFSLD-TFPYKCLNSLQVLDYSLNHIMTSKKQE----LQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp CTTCCEEECTTSC-CCBCC-CGGGTTCTTCCEEECTTSCCCBCCSSC----TTCCCTTCCEEECTTCCBC
T ss_pred CCCCCEEECCCCc-CCCCC-hhHHhCCCCCCEEECCCCcCCCCCHHH----HHhhhCcCCEEEeeCCCCc
Confidence 8888888888864 33211 1123467888888888832 22222 2333 57888888877654
No 213
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=8.1e-05 Score=78.99 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=43.3
Q ss_pred CCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC--CCCCHHHHHHHhcCCCCCc-EEEccCCCCccccchhhhhh
Q 048757 154 NLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR--TNINLSSVTRLLSSSRNLK-VLIALNCPVFEAEADTSMMY 230 (864)
Q Consensus 154 ~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~--~~~~~~~l~~~~~~~~~L~-~L~~~~c~~~~~~~~~~~~~ 230 (864)
.|++|+.|+++++. ++.-. .....+|++|+.+++++ +.++. ..+.++++|+ .+.+.+ .++... ...|
T Consensus 224 ~~~~L~~l~L~~n~-i~~I~-~~aF~~~~~L~~l~l~~ni~~I~~----~aF~~~~~L~~~l~l~~--~l~~I~--~~aF 293 (329)
T 3sb4_A 224 YMPNLVSLDISKTN-ATTIP-DFTFAQKKYLLKIKLPHNLKTIGQ----RVFSNCGRLAGTLELPA--SVTAIE--FGAF 293 (329)
T ss_dssp HCTTCCEEECTTBC-CCEEC-TTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEEEECT--TCCEEC--TTTT
T ss_pred hcCCCeEEECCCCC-cceec-HhhhhCCCCCCEEECCcccceehH----HHhhCChhccEEEEEcc--cceEEc--hhhh
Confidence 48888888887743 32111 12235788888888877 22222 2255667888 888866 344333 3455
Q ss_pred cccCceE
Q 048757 231 NQKGKVV 237 (864)
Q Consensus 231 ~~~~~ll 237 (864)
.+|..+-
T Consensus 294 ~~c~~L~ 300 (329)
T 3sb4_A 294 MGCDNLR 300 (329)
T ss_dssp TTCTTEE
T ss_pred hCCccCC
Confidence 6665544
No 214
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.48 E-value=0.0055 Score=72.74 Aligned_cols=295 Identities=13% Similarity=0.049 Sum_probs=188.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc----
Q 048757 314 LLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS---- 389 (864)
Q Consensus 314 L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~---- 389 (864)
+++-+...+..-+..++..+.++..++.... ....+.++.+...+.+.... +.|+.++..|+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~ 87 (986)
T 2iw3_A 19 LFQKLSVATADNRHEIASEVASFLNGNIIEH---------DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSP 87 (986)
T ss_dssp HHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---------SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCT
T ss_pred HHhhccccchhHHHHHHHHHHHHHhcccccc---------ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCC
Confidence 4444554344445677777877765442211 11125677777777764444 88999999998632
Q ss_pred hhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHH
Q 048757 390 KVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGAL 467 (864)
Q Consensus 390 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L 467 (864)
..-..++ +.++.++....+....|+..|..+...+.. +++.. ...+|.|+..+.. +..-..+..|..++
T Consensus 88 ~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~--~~kw~~k~~~l~~~ 158 (986)
T 2iw3_A 88 SVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVE--TNKWQEKIAILAAF 158 (986)
T ss_dssp TTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred CcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhcc--ccchHHHHHHHHHH
Confidence 2222222 568888888888889999988877777643 33221 3367888888864 44567888999999
Q ss_pred HHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHH
Q 048757 468 ANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVR 547 (864)
Q Consensus 468 ~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~ 547 (864)
..++.....+....-...||.+...+.+ ..+++...|..++..+|..-+ |.+ . ...+|.|+..+.+++. .
T Consensus 159 ~~~~~~~~~~~~~~~~~~~p~~~~~~~d-~k~~v~~~~~~~~~~~~~~~~-n~d---~---~~~~~~~~~~~~~p~~--~ 228 (986)
T 2iw3_A 159 SAMVDAAKDQVALRMPELIPVLSETMWD-TKKEVKAAATAAMTKATETVD-NKD---I---ERFIPSLIQCIADPTE--V 228 (986)
T ss_dssp HHHHHHSHHHHHHHHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHHGGGCC-CTT---T---GGGHHHHHHHHHCTTH--H
T ss_pred HHHHHHhHHHHHHhccchhcchHhhccc-CcHHHHHHHHHHHHHHHhcCC-Ccc---h---hhhHHHHHHHhcChhh--h
Confidence 9998755433333345668888888877 468999999999999997433 222 1 3568999999988754 4
Q ss_pred HHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC---chhhHHhhhcCCHHHHHHHH
Q 048757 548 QEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS---EANSIAIGREGGVAPLIALA 624 (864)
Q Consensus 548 ~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~---~~~~~~i~~~~~i~~Lv~lL 624 (864)
.+++..|..-++-.+....-.. =.+|.|.+-|.. .+..+++.++-++.|||.- +.....| -...+|-+-+..
T Consensus 229 ~~~~~~l~~~tfv~~v~~~~l~-~~~p~l~r~l~~---~~~~~~r~~~~~~~n~~~lv~~~~~~~~f-~~~l~p~~~~~~ 303 (986)
T 2iw3_A 229 PETVHLLGATTFVAEVTPATLS-IMVPLLSRGLNE---RETGIKRKSAVIIDNMCKLVEDPQVIAPF-LGKLLPGLKSNF 303 (986)
T ss_dssp HHHHHHHTTCCCCSCCCHHHHH-HHHHHHHHHHTS---SSHHHHHHHHHHHHHHHTTCCCHHHHHHH-HTTTHHHHHHHT
T ss_pred HHHHHHhhcCeeEeeecchhHH-HHHHHHHhhhcc---CcchhheeeEEEEcchhhhcCCHHHHhhh-hhhhhhHHHHHh
Confidence 4455555554443221111011 035667777765 7888899999999999964 2222222 123444444444
Q ss_pred c-cCCHHHHHHHHHHHHHhc
Q 048757 625 R-SAVVDVHETAAGALWNLA 643 (864)
Q Consensus 625 ~-~~~~~v~~~a~~aL~~L~ 643 (864)
. -.+|++|+.|..++..|-
T Consensus 304 ~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 304 ATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp TTCCSHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHH
Confidence 3 367999998888887773
No 215
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.46 E-value=3.1e-05 Score=77.41 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=17.0
Q ss_pred cCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCC
Q 048757 180 KLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPV 219 (864)
Q Consensus 180 ~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~ 219 (864)
.+++|+.|+++++....- ....+..+++|+.|++.+++.
T Consensus 133 ~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 133 RLTHLTHLALDQNQLKSI-PHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp GCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECTTSCB
T ss_pred cCCCCCEEECCCCcCCcc-CHHHHhCCCCCCEEEeeCCCc
Confidence 455555555555221100 001233445566666655553
No 216
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.44 E-value=5.3e-06 Score=89.48 Aligned_cols=167 Identities=11% Similarity=0.029 Sum_probs=78.8
Q ss_pred CCeecCCCCCCCHHHHHHHHhcC-CCCcEEEecCCCCchH--HHHh-CCcccceeeeecCCCCCHHHHHHHHhCCCCcce
Q 048757 9 WSSLDLRPYKFDTSAAESLSSRC-TNLQALWFRGALSADA--MIIL-QARRLREINVEFCRELTDAIFSAIVARHEMLEI 84 (864)
Q Consensus 9 w~~ldL~~~~~~~~~l~~i~~~~-~~L~~L~l~~~~~~~~--l~~~-~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~ 84 (864)
|+.+++++..+.. +.... ++++.|+|+++..... -... .+++|++|+|+++. ++...-.. ...+++|++
T Consensus 20 ~~~l~c~~~~l~~-----iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~-~~~l~~L~~ 92 (361)
T 2xot_A 20 SNILSCSKQQLPN-----VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEA-FVPVPNLRY 92 (361)
T ss_dssp TTEEECCSSCCSS-----CCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTT-TTTCTTCCE
T ss_pred CCEEEeCCCCcCc-----cCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhh-ccCCCCCCE
Confidence 5566666654322 21122 3377777777643221 1111 56777777777765 43211111 134667777
Q ss_pred EEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHh---cCCCCc
Q 048757 85 LHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AAL---ENLSSV 158 (864)
Q Consensus 85 L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~---~~~~~L 158 (864)
|+| +++. ++... ......+++|+.|+++++. ++.-. ......+++|++|+|+++. ++. ..+ ..+++|
T Consensus 93 L~L--s~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 93 LDL--SSNH-LHTLD-EFLFSDLQALEVLLLYNNH-IVVVD-RNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKL 165 (361)
T ss_dssp EEC--CSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTC
T ss_pred EEC--CCCc-CCcCC-HHHhCCCcCCCEEECCCCc-ccEEC-HHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcC
Confidence 777 4432 33210 0112346667777776665 43211 1112346667777776653 222 222 246666
Q ss_pred CEEEEeCCCCCCHHHHHHHHhcCCC--CcEEecCC
Q 048757 159 RYLSIAGTRNLNWSSAAIAWSKLTS--LVGLDTSR 191 (864)
Q Consensus 159 ~~L~l~~c~~~~~~~l~~l~~~~~~--L~~L~l~~ 191 (864)
++|+++++. ++......+ ..++. |+.|++++
T Consensus 166 ~~L~L~~N~-l~~l~~~~~-~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 166 MLLDLSSNK-LKKLPLTDL-QKLPAWVKNGLYLHN 198 (361)
T ss_dssp CEEECCSSC-CCCCCHHHH-HHSCHHHHTTEECCS
T ss_pred CEEECCCCC-CCccCHHHh-hhccHhhcceEEecC
Confidence 666666643 332111222 23444 35566666
No 217
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.39 E-value=6.5e-06 Score=88.78 Aligned_cols=160 Identities=16% Similarity=0.134 Sum_probs=102.0
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchH--HHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADA--MIILQARRLREINVEFCRELTDAIFSAIVARHEMLE 83 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~--l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~ 83 (864)
|...+.|||+++.+..-.-..+...+++|++|+|+++..... -....+++|++|+|+++. ++...- .....+++|+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~ 115 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDE-FLFSDLQALE 115 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT-TTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCH-HHhCCCcCCC
Confidence 566789999998765311111112688999999999864321 112278999999999986 543211 1235689999
Q ss_pred eEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHH--HhcCCCccEEeccCCCCCC---HHHhcCCCC-
Q 048757 84 ILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINAL--AKQCRQLVEVGFIDSGGVD---EAALENLSS- 157 (864)
Q Consensus 84 ~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l--~~~~~~L~~L~l~~c~~i~---~~~~~~~~~- 157 (864)
.|+| +++. ++... ......+++|++|+|+++. ++.-....+ ...+++|++|+|+++. ++ ...+..++.
T Consensus 116 ~L~L--~~N~-i~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 116 VLLL--YNNH-IVVVD-RNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAW 189 (361)
T ss_dssp EEEC--CSSC-CCEEC-TTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHH
T ss_pred EEEC--CCCc-ccEEC-HHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHh
Confidence 9999 6553 44211 1123468999999999987 543111111 1458999999999964 43 344556766
Q ss_pred -cCEEEEeCCCCCCHHH
Q 048757 158 -VRYLSIAGTRNLNWSS 173 (864)
Q Consensus 158 -L~~L~l~~c~~~~~~~ 173 (864)
|+.|++++++..-|..
T Consensus 190 ~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 190 VKNGLYLHNNPLECDCK 206 (361)
T ss_dssp HHTTEECCSSCEECCHH
T ss_pred hcceEEecCCCccCCcC
Confidence 4889999866444443
No 218
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.39 E-value=0.022 Score=69.60 Aligned_cols=352 Identities=9% Similarity=-0.043 Sum_probs=191.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCc---
Q 048757 313 LLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDS--- 389 (864)
Q Consensus 313 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~--- 389 (864)
.++..+.+++..+|...+.++..++..+-.. .+ .+.++.|++.+.++++..+..++.+|..++..-
T Consensus 89 ~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~------~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~ 157 (960)
T 1wa5_C 89 EIVPLMISLPNNLQVQIGEAISSIADSDFPD------RW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPL 157 (960)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT------TC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTS
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc------ch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4666666667899999999999987544211 11 567899999998888888899999999987631
Q ss_pred ----hhHHHHH--hcCcHHHHHHH-------HccCCH---------HHHHHHHHHHHHhcCCCCcHHHHHh--hCcHHHH
Q 048757 390 ----KVAKAVS--ENGGIDILADL-------ARSTNR---------LVAEEVVGGLWNLSVGEDHKGAIAR--AGGIKAL 445 (864)
Q Consensus 390 ----~~~~~i~--~~g~i~~Lv~l-------L~~~~~---------~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~L 445 (864)
+.+..+. -....++++++ +.+... .+...++++++++...+-. ..+.+ ...++.+
T Consensus 158 ~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~-~~~~~~~~~~~~~~ 236 (960)
T 1wa5_C 158 FRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIP-EFFEDNIQVGMGIF 236 (960)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCC-HHHHHTHHHHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHH
Confidence 2222221 11123434443 333211 2334467777776532211 11111 1123445
Q ss_pred HHHHcccC---CCC---------HHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHc----cCchhHHHHHHHHH
Q 048757 446 VDLIFKWS---SWN---------DGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARS----FMFEGVQEQAARAL 509 (864)
Q Consensus 446 ~~lL~~~~---~~~---------~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~----~~~~~v~~~a~~aL 509 (864)
..++.... ..+ ..++..++.+|..+.......-.-.-...++.....+.+ ...+.+...++..+
T Consensus 237 ~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl 316 (960)
T 1wa5_C 237 HKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFL 316 (960)
T ss_dssp HHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHH
T ss_pred HHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHH
Confidence 55554210 000 246677777777776432211000112334555555542 23467778888888
Q ss_pred HHHhhcCCCCcccchhhhccChHHHHH-----HHhc---------CCC--------------HHHHHHHHHHHHHhcCCh
Q 048757 510 ANLVAHGDSNSNNAAVGLETGALEALV-----QLTF---------SKH--------------EGVRQEAAGALWNLSFDD 561 (864)
Q Consensus 510 ~~L~~~~~~~~~~~~~~~~~~~i~~L~-----~lL~---------~~~--------------~~v~~~a~~~L~~Ls~~~ 561 (864)
..++.. +..+..+.....++.++ ..+. ..+ ...|..|..+|..++..-
T Consensus 317 ~~~~~~----~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~ 392 (960)
T 1wa5_C 317 TAVTRI----PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKN 392 (960)
T ss_dssp HHHHTS----HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHC
T ss_pred HHHhCc----HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHc
Confidence 887752 22222222223444444 2221 011 135666777777665442
Q ss_pred hhHHHHHHCCChHHHHHHHHh---cCCCCHHHHHHHHHHHHHhccCchhhHHhhh-----cCCHH----HHHHHHccC--
Q 048757 562 RNREAIAAAGGVEALVALVRS---CSSSSQGLQERAAGALWGLSLSEANSIAIGR-----EGGVA----PLIALARSA-- 627 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~---~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~-----~~~i~----~Lv~lL~~~-- 627 (864)
. +.+.. ..++.+.+.+.. ..+.++..++.|+.+++.++..-.....-.. ....+ .++..++++
T Consensus 393 ~--~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~ 469 (960)
T 1wa5_C 393 E--VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNI 469 (960)
T ss_dssp H--HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSC
T ss_pred c--hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCC
Confidence 2 11111 122333333431 0125678999999999998753110000000 01222 234445666
Q ss_pred -CHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcC
Q 048757 628 -VVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 628 -~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
++.+|..|+++++.++..-. . .. -...++.++..+.+++ +.+|..|++|+.++...
T Consensus 470 ~~p~vr~~a~~~lg~~~~~~~-~-~~-l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 470 PHIILRVDAIKYIYTFRNQLT-K-AQ-LIELMPILATFLQTDE-YVVYTYAAITIEKILTI 526 (960)
T ss_dssp SCHHHHHHHHHHHHHTGGGSC-H-HH-HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTC
T ss_pred CCceehHHHHHHHHHHHhhCC-H-HH-HHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhc
Confidence 88999999999999987421 1 11 2245778888887764 88999999999998764
No 219
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.35 E-value=2.2e-05 Score=77.98 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=6.3
Q ss_pred CcCcCeeeecccC
Q 048757 107 CPKLRRLWLSGVR 119 (864)
Q Consensus 107 ~~~L~~L~l~~~~ 119 (864)
+++|++|+++++.
T Consensus 103 l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 103 LFSLQLLLLNANK 115 (220)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEECCCCC
Confidence 4445555554443
No 220
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.34 E-value=0.0051 Score=62.72 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=113.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHH-HhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHH-hhCc
Q 048757 364 LDLARSPPEGLQSEVAKAIAN-LSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIA-RAGG 441 (864)
Q Consensus 364 ~~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~-~~g~ 441 (864)
++.|.+++...+..++.-|.. +..+.+....|+..+|+..|++.....+...+.+++.+|.+|-.....-.-++ ....
T Consensus 124 iekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~f 203 (339)
T 3dad_A 124 LEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDT 203 (339)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHH
Confidence 344556677778888899998 66789999999999999999999999999999999999999987655544444 5567
Q ss_pred HHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHh-------cC---cHHHHHHHHH--ccCchhHHHHHHHH
Q 048757 442 IKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVAR-------AG---GVHALVMLAR--SFMFEGVQEQAARA 508 (864)
Q Consensus 442 i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~-------~~---~i~~Lv~ll~--~~~~~~v~~~a~~a 508 (864)
|..+..++. +....|...|..+|..++...+ +...+.+ .. -.+.|+.+|. +..+.+++..|...
T Consensus 204 I~~lyslv~---s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 204 IQWLYTLCA---SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHGGG---CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHc---CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 788888886 4678899999999999987765 3222221 11 2778999997 22468888887776
Q ss_pred HHHHhhc
Q 048757 509 LANLVAH 515 (864)
Q Consensus 509 L~~L~~~ 515 (864)
+-.+-..
T Consensus 281 IN~lL~~ 287 (339)
T 3dad_A 281 INKTLAA 287 (339)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666554
No 221
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.30 E-value=4.3e-05 Score=75.78 Aligned_cols=136 Identities=14% Similarity=0.144 Sum_probs=85.1
Q ss_pred CCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCC
Q 048757 80 EMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSS 157 (864)
Q Consensus 80 ~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~ 157 (864)
+.+++|++ +++ .++...-......+++|++|+++++. ++.-. .....++++|++|+|+++.- +....+.++++
T Consensus 32 ~~~~~L~L--~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRL--NNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TTCSEEEC--CSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCCEEEc--CCC-cCCccCchhhhccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 45666776 433 23321001123467888999988876 54311 11235689999999999753 23344668999
Q ss_pred cCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 158 VRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 158 L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
|++|+++++. ++..... ....+++|+.|+++++..+... ...+..+++|+.|++.+++..-+.
T Consensus 107 L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 107 LKTLMLRSNR-ITCVGND-SFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCEEECTTSC-CCCBCTT-SSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCEEECCCCc-CCeECHh-HcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCcCCC
Confidence 9999999975 3321111 2247899999999993332110 123556789999999998865443
No 222
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.28 E-value=4.8e-05 Score=86.85 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=84.5
Q ss_pred ccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCC
Q 048757 55 RLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCR 134 (864)
Q Consensus 55 ~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~ 134 (864)
.|+.|+++++. ++. +.. ...+++|+.|+| +++ .++ .+......+++|+.|+++++. ++. +.. ..+++
T Consensus 442 ~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~L--s~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~-l~~l~ 508 (567)
T 1dce_A 442 DVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDL--SHN-RLR--ALPPALAALRCLEVLQASDNA-LEN--VDG-VANLP 508 (567)
T ss_dssp TCSEEECTTSC-CSS--CCC-GGGGTTCCEEEC--CSS-CCC--CCCGGGGGCTTCCEEECCSSC-CCC--CGG-GTTCS
T ss_pred CceEEEecCCC-CCC--CcC-ccccccCcEeec--Ccc-ccc--ccchhhhcCCCCCEEECCCCC-CCC--Ccc-cCCCC
Confidence 57889998875 543 223 456889999999 655 354 233334579999999999987 654 443 35699
Q ss_pred CccEEeccCCCCCCH----HHhcCCCCcCEEEEeCCCCCCHH--HHHHHHhcCCCCcEEec
Q 048757 135 QLVEVGFIDSGGVDE----AALENLSSVRYLSIAGTRNLNWS--SAAIAWSKLTSLVGLDT 189 (864)
Q Consensus 135 ~L~~L~l~~c~~i~~----~~~~~~~~L~~L~l~~c~~~~~~--~l~~l~~~~~~L~~L~l 189 (864)
+|++|++++|. ++. ..+..+++|+.|+++++. ++.. ....+...+|+|+.|++
T Consensus 509 ~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 509 RLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 99999999975 443 456699999999999975 3221 22334456888888864
No 223
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.16 E-value=4.6e-05 Score=75.84 Aligned_cols=186 Identities=19% Similarity=0.141 Sum_probs=126.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHH
Q 048757 365 DLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKA 444 (864)
Q Consensus 365 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~ 444 (864)
.++.++++.++..++..| ....+..+++++++.|+..++..| . .+.
T Consensus 57 ~ll~d~~~~VR~~AA~~l-----------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~~ 102 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-----------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------REQ 102 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-----------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SGG
T ss_pred HHhcCCCHHHHHHHHHhC-----------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HHH
Confidence 456788899998888753 123466778899999999988642 1 133
Q ss_pred HHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccch
Q 048757 445 LVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAA 524 (864)
Q Consensus 445 L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~ 524 (864)
|..++. +++..|+..++..+ . .+.|..++++ +++.||..++.. +.
T Consensus 103 L~~ll~---D~d~~VR~~aA~~l---~--------------~~~L~~L~~D-~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 103 LSALMF---DEDREVRITVADRL---P--------------LEQLEQMAAD-RDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp GGGTTT---CSCHHHHHHHHHHS---C--------------TGGGGGGTTC-SSHHHHHHHHHH---SC-----------
T ss_pred HHHHHc---CCCHHHHHHHHHhC---C--------------HHHHHHHHcC-CCHHHHHHHHHh---cC-----------
Confidence 555554 57888998877732 1 1234445555 468888888762 21
Q ss_pred hhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC
Q 048757 525 VGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS 604 (864)
Q Consensus 525 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~ 604 (864)
.+.+..+++++++.||..++.. + ..+.+..++.+ +++.||..++..+
T Consensus 148 -------~~~l~~l~~D~d~~VR~~aa~~---l--------------~~~ll~~ll~D---~d~~VR~aaa~~l------ 194 (244)
T 1lrv_A 148 -------PGRLFRFMRDEDRQVRKLVAKR---L--------------PEESLGLMTQD---PEPEVRRIVASRL------ 194 (244)
T ss_dssp -------GGGGGGTTTCSCHHHHHHHHHH---S--------------CGGGGGGSTTC---SSHHHHHHHHHHC------
T ss_pred -------HHHHHHHHcCCCHHHHHHHHHc---C--------------CHHHHHHHHcC---CCHHHHHHHHHhC------
Confidence 1234567788999999988875 2 12344456665 8999999888763
Q ss_pred chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHH
Q 048757 605 EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALA 682 (864)
Q Consensus 605 ~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~ 682 (864)
..+.|..++++++..|+..++..+. .+.|..| .+++ +.||..|+.+|+
T Consensus 195 -----------~~~~L~~Ll~D~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~-~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 -----------RGDDLLELLHDPDWTVRLAAVEHAS-----------------LEALREL-DEPD-PEVRLAIAGRLG 242 (244)
T ss_dssp -----------CGGGGGGGGGCSSHHHHHHHHHHSC-----------------HHHHHHC-CCCC-HHHHHHHHCCC-
T ss_pred -----------CHHHHHHHHcCCCHHHHHHHHHcCC-----------------HHHHHHc-cCCC-HHHHHHHHHHhC
Confidence 2356888899999999999888753 3556666 6665 889998887664
No 224
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.13 E-value=0.024 Score=57.88 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=117.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchh
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKV 391 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~ 391 (864)
..+++-|.+.+.+.++.+..-|..+...|.. ....++..+|+..|+....+.+.+.+..++++|.+|-.....
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~-------Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G 193 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKD-------LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG 193 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTT-------HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchH-------HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc
Confidence 5566777778888888888888885434432 568899999999999999999999999999999999887666
Q ss_pred HHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCC-CcHHHHHhhC----------cHHHHHHHHcccCCCCHHH
Q 048757 392 AKAVSE-NGGIDILADLARSTNRLVAEEVVGGLWNLSVGE-DHKGAIARAG----------GIKALVDLIFKWSSWNDGV 459 (864)
Q Consensus 392 ~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~-~~~~~i~~~g----------~i~~L~~lL~~~~~~~~~v 459 (864)
-..++. ...|..+..++.+.+..|.+.|+.+|..++... .+...+.++- ..+.|+.+|....+.+.++
T Consensus 194 m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 194 MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 655553 345888899999889999999999999997744 3444443221 2668999997444678899
Q ss_pred HHHHHHHHHHhcC
Q 048757 460 LERAAGALANLAA 472 (864)
Q Consensus 460 ~~~a~~~L~~L~~ 472 (864)
+..|...+-.+..
T Consensus 274 q~~amtLIN~lL~ 286 (339)
T 3dad_A 274 LVYTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9888776655543
No 225
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.11 E-value=2.8e-06 Score=91.29 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=38.2
Q ss_pred CCCcEEEecCCCCch--HHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 32 TNLQALWFRGALSAD--AMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 32 ~~L~~L~l~~~~~~~--~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
+++++|+|+++.... .-....+++|++|+|+++...+... ......+++|.++.+ ..+.+++.-. ......+++
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~--~~~N~l~~l~-~~~f~~l~~ 105 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRI--EKANNLLYIN-PEAFQNLPN 105 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEE--EEETTCCEEC-TTSBCCCTT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhc--ccCCcccccC-chhhhhccc
Confidence 457777777764221 1011256677777777765221100 001123455554333 2233333210 011235666
Q ss_pred cCeeeecccC
Q 048757 110 LRRLWLSGVR 119 (864)
Q Consensus 110 L~~L~l~~~~ 119 (864)
|++|+++++.
T Consensus 106 L~~L~l~~n~ 115 (350)
T 4ay9_X 106 LQYLLISNTG 115 (350)
T ss_dssp CCEEEEEEEC
T ss_pred cccccccccc
Confidence 7777776664
No 226
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.95 E-value=7.5e-05 Score=74.32 Aligned_cols=187 Identities=20% Similarity=0.139 Sum_probs=129.9
Q ss_pred HHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 048757 315 LSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKA 394 (864)
Q Consensus 315 ~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~ 394 (864)
..+++++++.+|..++..|. ...+..+++++++.|+..++..|.
T Consensus 56 ~~ll~d~~~~VR~~AA~~l~-------------------------~~~l~~L~~D~~~~VR~~aA~~L~----------- 99 (244)
T 1lrv_A 56 VQYLADPFWERRAIAVRYSP-------------------------VEALTPLIRDSDEVVRRAVAYRLP----------- 99 (244)
T ss_dssp GGGTTCSSHHHHHHHHTTSC-------------------------GGGGGGGTTCSSHHHHHHHHTTSC-----------
T ss_pred HHHhcCCCHHHHHHHHHhCC-------------------------HHHHHHHccCcCHHHHHHHHHHCC-----------
Confidence 35568999999999887431 112567788999999999986531
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC
Q 048757 395 VSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADD 474 (864)
Q Consensus 395 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~ 474 (864)
.+.|..+++++++.|+..++..+ . . +.+..++. +++..|+..++.. +.
T Consensus 100 ------~~~L~~ll~D~d~~VR~~aA~~l---~--~------------~~L~~L~~---D~d~~VR~~aA~~---l~--- 147 (244)
T 1lrv_A 100 ------REQLSALMFDEDREVRITVADRL---P--L------------EQLEQMAA---DRDYLVRAYVVQR---IP--- 147 (244)
T ss_dssp ------SGGGGGTTTCSCHHHHHHHHHHS---C--T------------GGGGGGTT---CSSHHHHHHHHHH---SC---
T ss_pred ------HHHHHHHHcCCCHHHHHHHHHhC---C--H------------HHHHHHHc---CCCHHHHHHHHHh---cC---
Confidence 13577788899999999988743 1 1 22334443 5788999888862 21
Q ss_pred cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHH
Q 048757 475 KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGAL 554 (864)
Q Consensus 475 ~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 554 (864)
.+.+..++++ +++.|+..++.. +. .+.+..+++++++.||..++..+
T Consensus 148 -----------~~~l~~l~~D-~d~~VR~~aa~~---l~------------------~~ll~~ll~D~d~~VR~aaa~~l 194 (244)
T 1lrv_A 148 -----------PGRLFRFMRD-EDRQVRKLVAKR---LP------------------EESLGLMTQDPEPEVRRIVASRL 194 (244)
T ss_dssp -----------GGGGGGTTTC-SCHHHHHHHHHH---SC------------------GGGGGGSTTCSSHHHHHHHHHHC
T ss_pred -----------HHHHHHHHcC-CCHHHHHHHHHc---CC------------------HHHHHHHHcCCCHHHHHHHHHhC
Confidence 1233445555 568899888775 11 13445678899999999988752
Q ss_pred HHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHH
Q 048757 555 WNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHET 634 (864)
Q Consensus 555 ~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~ 634 (864)
..+.|..++.+ +++.||..++..+. .+.|..+ ++++..|+..
T Consensus 195 -----------------~~~~L~~Ll~D---~d~~VR~~aa~~l~-----------------~~~L~~L-~D~~~~VR~a 236 (244)
T 1lrv_A 195 -----------------RGDDLLELLHD---PDWTVRLAAVEHAS-----------------LEALREL-DEPDPEVRLA 236 (244)
T ss_dssp -----------------CGGGGGGGGGC---SSHHHHHHHHHHSC-----------------HHHHHHC-CCCCHHHHHH
T ss_pred -----------------CHHHHHHHHcC---CCHHHHHHHHHcCC-----------------HHHHHHc-cCCCHHHHHH
Confidence 23567777887 89999999998863 3556566 8899999998
Q ss_pred HHHHHH
Q 048757 635 AAGALW 640 (864)
Q Consensus 635 a~~aL~ 640 (864)
|...|+
T Consensus 237 a~~~L~ 242 (244)
T 1lrv_A 237 IAGRLG 242 (244)
T ss_dssp HHCCC-
T ss_pred HHHHhC
Confidence 876553
No 227
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.87 E-value=0.00028 Score=68.17 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=35.0
Q ss_pred CCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCC
Q 048757 80 EMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLS 156 (864)
Q Consensus 80 ~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~ 156 (864)
++|++|++ +++ .++. +......+++|++|+++++. ++.-.- ....++++|++|+|+++. ++. ..+.+++
T Consensus 31 ~~l~~L~L--~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~-~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYL--DGN-QFTL--VPKELSNYKHLTLIDLSNNR-ISTLSN-QSFSNMTQLLTLILSYNR-LRCIPPRTFDGLK 102 (193)
T ss_dssp TTCCEEEC--CSS-CCCS--CCGGGGGCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCBCCTTTTTTCT
T ss_pred CCCCEEEC--CCC-cCch--hHHHhhcccCCCEEECCCCc-CCEeCH-hHccCCCCCCEEECCCCc-cCEeCHHHhCCCC
Confidence 45666666 332 2321 11122345566666666554 332110 112335556666665543 221 2233555
Q ss_pred CcCEEEEeCC
Q 048757 157 SVRYLSIAGT 166 (864)
Q Consensus 157 ~L~~L~l~~c 166 (864)
+|++|+++++
T Consensus 103 ~L~~L~L~~N 112 (193)
T 2wfh_A 103 SLRLLSLHGN 112 (193)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 5555555554
No 228
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.80 E-value=0.00027 Score=67.15 Aligned_cols=15 Identities=13% Similarity=0.087 Sum_probs=7.9
Q ss_pred CCCCCcEEEccCCCC
Q 048757 205 SSRNLKVLIALNCPV 219 (864)
Q Consensus 205 ~~~~L~~L~~~~c~~ 219 (864)
.+++|+.|++.+++.
T Consensus 122 ~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 122 RLTSLQKIWLHTNPW 136 (177)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred CCcccCEEEecCCCe
Confidence 345555555555543
No 229
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.74 E-value=0.00016 Score=85.36 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=75.1
Q ss_pred CCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHh
Q 048757 52 QARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAK 131 (864)
Q Consensus 52 ~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~ 131 (864)
.+++|+.|+|+++. ++. +..-...+++|++|+| +++ .++ .+..-...+++|+.|+|++|. ++ .+..-..
T Consensus 222 ~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~L--s~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~ 290 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYL--NGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELG 290 (727)
T ss_dssp CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBC--TTS-CCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGG
T ss_pred cCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEe--eCC-cCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhc
Confidence 78899999999987 431 1111236899999999 655 454 232223578999999999998 66 2332235
Q ss_pred cCCCccEEeccCCCCCCH--HHhcCCCCcCEEEEeCCCC
Q 048757 132 QCRQLVEVGFIDSGGVDE--AALENLSSVRYLSIAGTRN 168 (864)
Q Consensus 132 ~~~~L~~L~l~~c~~i~~--~~~~~~~~L~~L~l~~c~~ 168 (864)
++++|++|+|++|. ++. ..+.++++|++|+|+++..
T Consensus 291 ~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 291 SCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 68999999999974 442 2355899999999999864
No 230
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.74 E-value=0.00023 Score=83.98 Aligned_cols=107 Identities=21% Similarity=0.166 Sum_probs=52.8
Q ss_pred hcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH--HHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCC
Q 048757 105 YCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE--AALENLSSVRYLSIAGTRNLNWSSAAIAWSKLT 182 (864)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~--~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~ 182 (864)
..++.|+.|+|+++. ++. +..-...+++|++|+|++|. ++. ..+.++++|++|+|++|. ++ .+..-..+++
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~ 293 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSCF 293 (727)
T ss_dssp -CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGGT
T ss_pred ccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCCC
Confidence 345566666666654 321 11111135666666666653 321 223356666666666653 33 1111123566
Q ss_pred CCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCc
Q 048757 183 SLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVF 220 (864)
Q Consensus 183 ~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~ 220 (864)
+|+.|+++++..+ .+...+..+++|+.|++++++..
T Consensus 294 ~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 294 QLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCC
T ss_pred CCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccC
Confidence 6666666663332 22223455667777777766644
No 231
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.73 E-value=0.00015 Score=69.02 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=36.6
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNL 169 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~ 169 (864)
.+++|++|+++++. ++.-. ......+++|++|+++++. ++. ..+..+++|++|+++++...
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLP-NGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEEECCCCC-ccccC-HHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 46667777777665 43211 1122457788888888763 332 22336788888888887543
No 232
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.53 E-value=0.00034 Score=67.59 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=55.7
Q ss_pred cccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcC
Q 048757 54 RRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQC 133 (864)
Q Consensus 54 ~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~ 133 (864)
++|++|+++++. ++.. ......+++|+.|+| +++ .++...- .....+++|++|+++++. ++.-.- .....+
T Consensus 31 ~~l~~L~L~~n~-i~~i--p~~~~~l~~L~~L~L--s~N-~i~~i~~-~~f~~l~~L~~L~Ls~N~-l~~i~~-~~f~~l 101 (193)
T 2wfh_A 31 RDVTELYLDGNQ-FTLV--PKELSNYKHLTLIDL--SNN-RISTLSN-QSFSNMTQLLTLILSYNR-LRCIPP-RTFDGL 101 (193)
T ss_dssp TTCCEEECCSSC-CCSC--CGGGGGCTTCCEEEC--CSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCBCCT-TTTTTC
T ss_pred CCCCEEECCCCc-Cchh--HHHhhcccCCCEEEC--CCC-cCCEeCH-hHccCCCCCCEEECCCCc-cCEeCH-HHhCCC
Confidence 355566655543 3311 112244667777777 433 2332110 112357788888888776 443211 123457
Q ss_pred CCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCC
Q 048757 134 RQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTR 167 (864)
Q Consensus 134 ~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~ 167 (864)
++|++|+|+++. ++. ..+..+++|++|++++.+
T Consensus 102 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 102 KSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 889999998864 332 223366777777776644
No 233
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.53 E-value=0.0033 Score=63.42 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=40.9
Q ss_pred hcCcCcCeeeecccCCCcH-HHHHHHHhcCCCccEEeccCCCCCCHH-HhcCCC--CcCEEEEeCCCCCC-----HHHHH
Q 048757 105 YCCPKLRRLWLSGVREVNG-DAINALAKQCRQLVEVGFIDSGGVDEA-ALENLS--SVRYLSIAGTRNLN-----WSSAA 175 (864)
Q Consensus 105 ~~~~~L~~L~l~~~~~l~~-~~l~~l~~~~~~L~~L~l~~c~~i~~~-~~~~~~--~L~~L~l~~c~~~~-----~~~l~ 175 (864)
..+|+|++|+|+++. ++. ..+..+...+|+|+.|+|+++. +++. .+..++ +|++|++++++--. .....
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456666666666665 432 1233334456666666666643 3322 333222 66666666654211 11223
Q ss_pred HHHhcCCCCcEEec
Q 048757 176 IAWSKLTSLVGLDT 189 (864)
Q Consensus 176 ~l~~~~~~L~~L~l 189 (864)
.+...+|+|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 34445666666653
No 234
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.47 E-value=9.1e-05 Score=71.64 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=6.1
Q ss_pred CCCccEEeccCC
Q 048757 133 CRQLVEVGFIDS 144 (864)
Q Consensus 133 ~~~L~~L~l~~c 144 (864)
+++|++|+++++
T Consensus 101 l~~L~~L~L~~N 112 (192)
T 1w8a_A 101 LHQLKTLNLYDN 112 (192)
T ss_dssp CTTCCEEECCSS
T ss_pred CCCCCEEECCCC
Confidence 455555555553
No 235
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.43 E-value=0.00032 Score=67.70 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=36.2
Q ss_pred CCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---HhcCCC
Q 048757 80 EMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALENLS 156 (864)
Q Consensus 80 ~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~~~~ 156 (864)
++|++|++ +++ .++...-..+...+++|++|+++++. ++.-. .....++++|++|+++++. ++.. .+.+++
T Consensus 29 ~~l~~L~l--~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 102 (192)
T 1w8a_A 29 LHTTELLL--NDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGENK-IKEISNKMFLGLH 102 (192)
T ss_dssp TTCSEEEC--CSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSCC-CCEECSSSSTTCT
T ss_pred CCCCEEEC--CCC-cCCccCCccccccCCCCCEEECCCCC-CCCcC-HhHcCCcccCCEEECCCCc-CCccCHHHhcCCC
Confidence 36666666 433 23211100112345666666666654 33211 1112335566666666543 3221 122455
Q ss_pred CcCEEEEeCC
Q 048757 157 SVRYLSIAGT 166 (864)
Q Consensus 157 ~L~~L~l~~c 166 (864)
+|++|+++++
T Consensus 103 ~L~~L~L~~N 112 (192)
T 1w8a_A 103 QLKTLNLYDN 112 (192)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 5555555554
No 236
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.23 E-value=3.5e-05 Score=82.62 Aligned_cols=206 Identities=17% Similarity=0.054 Sum_probs=121.0
Q ss_pred CCCCCeecCCCCCCCHHHHHHHHhcCCCCcEEEecCCCCchHHH---HhCCcccceeeeecCCCCCHHHHHHHHhCCCCc
Q 048757 6 PCLWSSLDLRPYKFDTSAAESLSSRCTNLQALWFRGALSADAMI---ILQARRLREINVEFCRELTDAIFSAIVARHEML 82 (864)
Q Consensus 6 p~lw~~ldL~~~~~~~~~l~~i~~~~~~L~~L~l~~~~~~~~l~---~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L 82 (864)
|...+.|+|+++++.. .-......+++|++|+|+++.....+. ...+++|.++...++.+++...- .....+++|
T Consensus 29 ~~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L 106 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL 106 (350)
T ss_dssp CTTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTC
T ss_pred CCCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc-hhhhhcccc
Confidence 5678899998886642 001123568899999999997543211 12677777766666655543211 112568999
Q ss_pred ceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHHHhc--CCCCcCE
Q 048757 83 EILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEAALE--NLSSVRY 160 (864)
Q Consensus 83 ~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~--~~~~L~~ 160 (864)
++|++ +++. ++...- .......++..|++.++..++.-.-..+......|+.|+++++. ++...-. ...+|++
T Consensus 107 ~~L~l--~~n~-l~~~~~-~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~ 181 (350)
T 4ay9_X 107 QYLLI--SNTG-IKHLPD-VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDE 181 (350)
T ss_dssp CEEEE--EEEC-CSSCCC-CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEE
T ss_pred ccccc--cccc-cccCCc-hhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc-ccCCChhhccccchhH
Confidence 99999 5442 321100 00113456777888776544321111122223568899999864 5532222 5678999
Q ss_pred EEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCcccc
Q 048757 161 LSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEAE 223 (864)
Q Consensus 161 L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~~ 223 (864)
|+++++..++.-.- .....+++|+.||++++..+. +. -....+|+.|...+|..+..-
T Consensus 182 l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~--lp--~~~~~~L~~L~~l~~~~l~~l 239 (350)
T 4ay9_X 182 LNLSDNNNLEELPN-DVFHGASGPVILDISRTRIHS--LP--SYGLENLKKLRARSTYNLKKL 239 (350)
T ss_dssp EECTTCTTCCCCCT-TTTTTEECCSEEECTTSCCCC--CC--SSSCTTCCEEECTTCTTCCCC
T ss_pred HhhccCCcccCCCH-HHhccCcccchhhcCCCCcCc--cC--hhhhccchHhhhccCCCcCcC
Confidence 99988776653211 223578999999999843321 10 012367888888888776644
No 237
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.88 E-value=0.0012 Score=71.75 Aligned_cols=75 Identities=16% Similarity=0.198 Sum_probs=35.0
Q ss_pred CCcEEEecCCC-CchHHHHhCCcccceeeeecCC--CCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcC
Q 048757 33 NLQALWFRGAL-SADAMIILQARRLREINVEFCR--ELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPK 109 (864)
Q Consensus 33 ~L~~L~l~~~~-~~~~l~~~~~~~L~~L~l~~c~--~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~ 109 (864)
+|+.+.+...- .+..-....|++|+.++++++. .+.+..+ .|.+|+++.|. .....|.+.. ...|++
T Consensus 158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp-~~l~~I~~~a----F~~~~~ 227 (401)
T 4fdw_A 158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLP-VTLKEIGSQA----FLKTSQ 227 (401)
T ss_dssp CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECC-TTCCEECTTT----TTTCTT
T ss_pred CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhE-----eecccCEEEeC-CchheehhhH----hhCCCC
Confidence 47777776521 1111112267777777776432 1222222 14566666662 2222222221 235666
Q ss_pred cCeeeecc
Q 048757 110 LRRLWLSG 117 (864)
Q Consensus 110 L~~L~l~~ 117 (864)
|+.+++..
T Consensus 228 L~~l~l~~ 235 (401)
T 4fdw_A 228 LKTIEIPE 235 (401)
T ss_dssp CCCEECCT
T ss_pred CCEEecCC
Confidence 66666643
No 238
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.87 E-value=0.28 Score=59.81 Aligned_cols=303 Identities=10% Similarity=0.027 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHhC-Cch-hHHHHHhcCcHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHH
Q 048757 373 GLQSEVAKAIANLSV-DSK-VAKAVSENGGIDILADLAR-----STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKAL 445 (864)
Q Consensus 373 ~~~~~a~~~L~~L~~-~~~-~~~~i~~~g~i~~Lv~lL~-----~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L 445 (864)
.++..++.+|..+.. .++ ....+ ...++..++.+. ..++.+...++..+..++..+..+..+.....++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMI--NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHH
Confidence 466777888887765 222 11111 122444555553 346778888888888887644332222111233333
Q ss_pred H-----HHHc----c---cC-------------CCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHc-----
Q 048757 446 V-----DLIF----K---WS-------------SWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARS----- 495 (864)
Q Consensus 446 ~-----~lL~----~---~~-------------~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~----- 495 (864)
+ ..+. + |. +.....+..|..+|..++..-. ..+. ...++.+...+..
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~-~~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT-NIFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH-HHHHHHHHHHHHHHHC--
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH-HHHHHHHHHHHHHhccCc
Confidence 3 2221 0 11 1112456667777766654432 1111 1122333333441
Q ss_pred cCchhHHHHHHHHHHHHhhcCCCCc-ccchhhhccChHH----HHHHHhcCC---CHHHHHHHHHHHHHhcCChhhHHHH
Q 048757 496 FMFEGVQEQAARALANLVAHGDSNS-NNAAVGLETGALE----ALVQLTFSK---HEGVRQEAAGALWNLSFDDRNREAI 567 (864)
Q Consensus 496 ~~~~~v~~~a~~aL~~L~~~~~~~~-~~~~~~~~~~~i~----~L~~lL~~~---~~~v~~~a~~~L~~Ls~~~~~~~~i 567 (864)
..+...++.|+.++..++..+.... .....-......+ .++..+.++ ++-+|..|+++++.++..- ..+ .
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-~ 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-Q 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-H
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-H
Confidence 1345678889999999986421110 0000000002223 234445666 8899999999999987642 111 1
Q ss_pred HHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc--------h-hhHHhhh--cCCHHHHHHHHccCC---HH--H
Q 048757 568 AAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE--------A-NSIAIGR--EGGVAPLIALARSAV---VD--V 631 (864)
Q Consensus 568 ~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~--------~-~~~~i~~--~~~i~~Lv~lL~~~~---~~--v 631 (864)
. ...++.++..|.+ +++.|+..|+.+|.+++... . .+..+.. ...++.|+.+++... +. .
T Consensus 494 l-~~~l~~l~~~L~d---~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 494 L-IELMPILATFLQT---DEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp H-HHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred H-HHHHHHHHHHhCC---CChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 1 1246677777765 68999999999999998742 1 1223322 234455566666531 11 2
Q ss_pred HHHHHHHHHHhcCC-cccHHHHHhCCcHHHHHHHh----cCCCcHHHHHHHHHHHHHhhcC
Q 048757 632 HETAAGALWNLAFN-PGNALCIVEGGGVQALIHLC----SSSLSKMARFMAALALAYIVDG 687 (864)
Q Consensus 632 ~~~a~~aL~~L~~~-~~~~~~i~~~g~v~~L~~ll----~~~~~~~~r~~aa~aL~~l~~~ 687 (864)
.+.+..++..++.. .+.-.... ...++.|...+ ++++++..+.....+++.+...
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~~-~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 34455555555321 01000000 01233344333 3455566776667777766654
No 239
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.57 E-value=3.1 Score=51.09 Aligned_cols=212 Identities=11% Similarity=-0.001 Sum_probs=120.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhC----
Q 048757 313 LLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSV---- 387 (864)
Q Consensus 313 ~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~---- 387 (864)
.+++.+.+++.+.|..|-..|..+-.. .++...+..+|. +.++.+|..|+..|.+...
T Consensus 20 ~~l~~~~~p~~~~r~~Ae~~L~~~~~~-----------------p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~ 82 (1049)
T 3m1i_C 20 QVVSTFYQGSGVQQKQAQEILTKFQDN-----------------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWK 82 (1049)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHS-----------------TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHhC-----------------chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCc
Confidence 444445567777888999899876322 234445555553 5688999999999998653
Q ss_pred --CchhHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcCC--CCcHHHHHhhCcHHHHHHHHcccCCCCHH
Q 048757 388 --DSKVAKAVSENGGIDILADLARST-----NRLVAEEVVGGLWNLSVG--EDHKGAIARAGGIKALVDLIFKWSSWNDG 458 (864)
Q Consensus 388 --~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 458 (864)
.++.+..+. ...++.+...-.++ ++.++...+.++..++.. ++. -.+.++.+++.+. .++.
T Consensus 83 ~l~~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-----Wp~ll~~L~~~~~----~~~~ 152 (1049)
T 3m1i_C 83 LLPNDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-----WPEFIPELIGSSS----SSVN 152 (1049)
T ss_dssp GSCHHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHT----TCHH
T ss_pred cCCHHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHc----cChH
Confidence 233333332 22222222221111 367788888888887642 211 1246777888874 3556
Q ss_pred HHHHHHHHHHHhcCCC-----c----ch-----HHHHhc--CcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCccc
Q 048757 459 VLERAAGALANLAADD-----K----CS-----LEVARA--GGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNN 522 (864)
Q Consensus 459 v~~~a~~~L~~L~~~~-----~----~~-----~~i~~~--~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~ 522 (864)
..+.+..+|..++..- + .+ ..+... ..+..+...+....++.++..++.++......-+
T Consensus 153 ~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~----- 227 (1049)
T 3m1i_C 153 VCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP----- 227 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-----
T ss_pred HHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC-----
Confidence 6677777887776421 0 01 122221 1233345555554557788889999887654311
Q ss_pred chhhhccChHHHHHH-HhcCCCHHHHHHHHHHHHHhc
Q 048757 523 AAVGLETGALEALVQ-LTFSKHEGVRQEAAGALWNLS 558 (864)
Q Consensus 523 ~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~Ls 558 (864)
...+.+...++.+.+ ++ .+++++..|+.+|..+.
T Consensus 228 ~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~ 262 (1049)
T 3m1i_C 228 YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVS 262 (1049)
T ss_dssp THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHH
Confidence 122344556666653 33 25666777776666554
No 240
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.14 E-value=0.01 Score=59.82 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=45.3
Q ss_pred HHhCCCCcceEEeccCCCCCCCH-HHHHHHHhcCcCcCeeeecccCCCcHH-HHHHHHhcCCCccEEeccCCCCCCH---
Q 048757 75 IVARHEMLEILHFGLDVCDRISS-DAIKTVAYCCPKLRRLWLSGVREVNGD-AINALAKQCRQLVEVGFIDSGGVDE--- 149 (864)
Q Consensus 75 l~~~~~~L~~L~l~~~~c~~i~~-~~l~~l~~~~~~L~~L~l~~~~~l~~~-~l~~l~~~~~~L~~L~l~~c~~i~~--- 149 (864)
+...+|+|++|+| +++ .++. .++..+...+|+|+.|+|+++. +++. .+..+. .+ +|++|+|+++. ++.
T Consensus 165 ~~~~l~~L~~L~L--s~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~ 237 (267)
T 3rw6_A 165 IEENIPELLSLNL--SNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIK-GL-KLEELWLDGNS-LCDTFR 237 (267)
T ss_dssp HHHHCTTCCEEEC--TTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGT-TS-CCSEEECTTST-TGGGCS
T ss_pred HHhhCCCCCEEEC--CCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcc-cC-CcceEEccCCc-CccccC
Confidence 3355777777777 543 3432 2333444567777777777766 5432 222221 12 77777777755 332
Q ss_pred --H-----HhcCCCCcCEEEE
Q 048757 150 --A-----ALENLSSVRYLSI 163 (864)
Q Consensus 150 --~-----~~~~~~~L~~L~l 163 (864)
. .+..+|+|+.||=
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESS
T ss_pred cchhHHHHHHHHCcccCeECC
Confidence 1 1226777777763
No 241
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=95.09 E-value=2.6 Score=51.28 Aligned_cols=339 Identities=12% Similarity=-0.000 Sum_probs=174.5
Q ss_pred ccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh---cCCCHHHHHHHHHHHHHHhCC-chhHHH
Q 048757 319 ESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA---RSPPEGLQSEVAKAIANLSVD-SKVAKA 394 (864)
Q Consensus 319 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL---~~~~~~~~~~a~~~L~~L~~~-~~~~~~ 394 (864)
.+.+...++.+..+++.++.+-.+.. ...++.++..+ .++++.++..++++++.++.. .... .
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~------------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~ 525 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY------------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-V 525 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC------------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-H
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh------------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-H
Confidence 34567778888999999886543211 12233344333 345788999999999997752 1111 1
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHh--hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcC
Q 048757 395 VSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIAR--AGGIKALVDLIFKWSSWNDGVLERAAGALANLAA 472 (864)
Q Consensus 395 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~ 472 (864)
+ -...++.++..+.+ +.++..|+.+|.+++.. .+..+.. ...+..+..++.+ ...+...+..+..+++.++.
T Consensus 526 ~-l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~-~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 526 M-INSVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMK-QIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp H-HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHT
T ss_pred H-HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhcc-CCCChHHHHHHHHHHHHHHh
Confidence 2 23668888888854 78999999999999852 1111211 1234444555543 12356788888888888875
Q ss_pred CCc--chHHHHhcCcHHHHHHHHH----ccCchhHHH---HHHHHHHHHhhcCCC-Cc-c--------------cc--hh
Q 048757 473 DDK--CSLEVARAGGVHALVMLAR----SFMFEGVQE---QAARALANLVAHGDS-NS-N--------------NA--AV 525 (864)
Q Consensus 473 ~~~--~~~~i~~~~~i~~Lv~ll~----~~~~~~v~~---~a~~aL~~L~~~~~~-~~-~--------------~~--~~ 525 (864)
... ..... -...++.+...+. ...+++.+. ....+|..+...-.. .+ . .. ..
T Consensus 600 ~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (963)
T 2x19_B 600 ALQVEEILKN-LHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV 678 (963)
T ss_dssp TSCHHHHHHH-HHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred cCCHHHHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence 432 11111 1223444444443 222344433 344445444432110 00 0 00 01
Q ss_pred hhccChHHHHHHHhc--CCCHHHHHHHHHHHHHhcCC--hhhHHHHHHCCChHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 048757 526 GLETGALEALVQLTF--SKHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEALVALVRSC--SSSSQGLQERAAGALW 599 (864)
Q Consensus 526 ~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~Ls~~--~~~~~~i~~~~~i~~Lv~lL~~~--~~~~~~v~~~A~~aL~ 599 (864)
-.....++.+..++. ..+..+.+.++.++..+... +.. ...+++++..+... ..+.+.+-......+.
T Consensus 679 ~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~------~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~ 752 (963)
T 2x19_B 679 VVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF------APMVPQLCEMLGRMYSTIPQASALDLTRQLVH 752 (963)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT------GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc------cccHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 122234455555543 34678888888888876421 100 11245444443220 0123333322222233
Q ss_pred HhccCchhhHHhhh--cCCHHHHHHHHcc---CCHHHHHHHHHHHHHhcC-CcccHHHHHhCC-----cHHHHHHHhcCC
Q 048757 600 GLSLSEANSIAIGR--EGGVAPLIALARS---AVVDVHETAAGALWNLAF-NPGNALCIVEGG-----GVQALIHLCSSS 668 (864)
Q Consensus 600 ~L~~~~~~~~~i~~--~~~i~~Lv~lL~~---~~~~v~~~a~~aL~~L~~-~~~~~~~i~~~g-----~v~~L~~ll~~~ 668 (864)
.+..++.....+.. ...+..++.+++. ..++++......|..+.. .+.. +.... .++.++..+...
T Consensus 753 ~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~---~~~~~~~~~~i~~~~~~~l~~~ 829 (963)
T 2x19_B 753 IFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDL---FLCERLDVKAVFQCAVLALKFP 829 (963)
T ss_dssp HHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGG---GGCTTSCHHHHHHHHHHHTTCS
T ss_pred HhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHH---HcCCcccHHHHHHHHHHHcCCC
Confidence 22222222222222 1223444444442 358999999888888875 2211 11112 234455566655
Q ss_pred CcHHHHHHHHHHHHHhhcC
Q 048757 669 LSKMARFMAALALAYIVDG 687 (864)
Q Consensus 669 ~~~~~r~~aa~aL~~l~~~ 687 (864)
+ +.+...+...+..+...
T Consensus 830 ~-~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 830 E-APTVKASCGFFTELLPR 847 (963)
T ss_dssp C-HHHHHHHHHHHHHHGGG
T ss_pred C-HHHHHHHHHHHHHHHhc
Confidence 4 67777788888877654
No 242
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=94.56 E-value=9.1 Score=46.89 Aligned_cols=365 Identities=11% Similarity=-0.020 Sum_probs=174.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcc--cccchHhH----HHHHHh--CCHHHHHHHhc-CCCHHHHHHHHHH
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQN--AMVDCQRA----EAILRH--GGVRLLLDLAR-SPPEGLQSEVAKA 381 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~~~----~~i~~~--~~i~~L~~lL~-~~~~~~~~~a~~~ 381 (864)
++.|++.++ .++..+..+..+|..++..-.+. ......++ ..+... ..++.+...+. .++..++..++.+
T Consensus 140 l~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~ 218 (1049)
T 3m1i_C 140 IPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES 218 (1049)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 577888886 55666677777777766321110 00001111 222221 12233344443 3567889999999
Q ss_pred HHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCC---CCc---HHHHHh--hCcHHHHHH------
Q 048757 382 IANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVG---EDH---KGAIAR--AGGIKALVD------ 447 (864)
Q Consensus 382 L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~---~~~---~~~i~~--~g~i~~L~~------ 447 (864)
+.....--.. ..+.+...++.+.+.+- .++.++..|+.+|..+... +.. ...+.. .+.+..+..
T Consensus 219 l~~~l~wi~~-~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~ 296 (1049)
T 3m1i_C 219 LLRYLHWIPY-RYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVT 296 (1049)
T ss_dssp HHHHTTTSCT-HHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHhhCCH-HHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCc
Confidence 9886552211 11444555666663222 3788999999999988643 221 111111 112222211
Q ss_pred -----HHcccCCCCHHHHHHHHHHHHHhcCC-------C-cchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhh
Q 048757 448 -----LIFKWSSWNDGVLERAAGALANLAAD-------D-KCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVA 514 (864)
Q Consensus 448 -----lL~~~~~~~~~v~~~a~~~L~~L~~~-------~-~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~ 514 (864)
......+.+.+.....+..+..+... + +....+ ...++.++..... ++.++...+...+..++.
T Consensus 297 ~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~~l~~ll~~~~~-~d~~v~~~~lefw~~l~~ 373 (1049)
T 3m1i_C 297 ADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELL--LNAHQYLIQLSKI-EERELFKTTLDYWHNLVA 373 (1049)
T ss_dssp SCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHH--HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHH
Confidence 11111122334444444444333211 1 011111 1234555555444 356777777777777765
Q ss_pred ----cCCCCcccchhhhccChHHHHHHHhcCC-------------------CH---HHHHHHHHHHHHhcCChhhHHHHH
Q 048757 515 ----HGDSNSNNAAVGLETGALEALVQLTFSK-------------------HE---GVRQEAAGALWNLSFDDRNREAIA 568 (864)
Q Consensus 515 ----~~~~~~~~~~~~~~~~~i~~L~~lL~~~-------------------~~---~v~~~a~~~L~~Ls~~~~~~~~i~ 568 (864)
.+. .......+ =...++.++..+..+ +. ..+..+..+|..++.... ..+.
T Consensus 374 ~l~~~~~-~~~~~~~~-l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~--~~~l 449 (1049)
T 3m1i_C 374 DLFYEPL-KKHIYEEI-CSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNV--IDTE 449 (1049)
T ss_dssp HHHHSTT-CGGGGHHH-HHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCH--HHHH
T ss_pred HHHhchh-HHHHHHHH-HHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCH--HHHH
Confidence 211 11100000 012233333333211 11 224455556666642111 0111
Q ss_pred HCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc-hhhHHhhhcCCHHHHHHHHc-----cCCHHHHHHHHHHHHHh
Q 048757 569 AAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE-ANSIAIGREGGVAPLIALAR-----SAVVDVHETAAGALWNL 642 (864)
Q Consensus 569 ~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~-~~~~~i~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~~L 642 (864)
. -..+.+-+.+.. ...++..++.|+.+++.++..- .....-.-...++.|..+.. ++.+.++..++++++++
T Consensus 450 ~-~v~~~l~~~l~~-~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry 527 (1049)
T 3m1i_C 450 E-IMISKLARQIDG-SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQY 527 (1049)
T ss_dssp H-HHHHHHHHHHTS-SSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHC
T ss_pred H-HHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHH
Confidence 1 012223333321 2367889999999999887541 11011101113333444322 12344555688999988
Q ss_pred cCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 643 AFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 643 ~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
+..-........ .+++.|++.+.+++ +.++..|+.++.++.....
T Consensus 528 ~~~~~~~~~~l~-~vl~~ll~~l~~~~-~~V~~~A~~al~~l~~~~~ 572 (1049)
T 3m1i_C 528 PRFLKAHWNFLR-TVILKLFEFMHETH-EGVQDMACDTFIKIVQKCK 572 (1049)
T ss_dssp HHHHHHCHHHHH-HHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHH
Confidence 752111112222 45677888887765 8899999999999987544
No 243
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.57 Score=47.53 Aligned_cols=190 Identities=14% Similarity=0.049 Sum_probs=115.0
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCCch---hHHH-HHhcCc-HHHHHHHHccCCHHHHHHHHHHHHHhcCCC---
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVDSK---VAKA-VSENGG-IDILADLARSTNRLVAEEVVGGLWNLSVGE--- 430 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~---~~~~-i~~~g~-i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~--- 430 (864)
-+| +-+.|.+.+-..|..|...|..+..... .... +...+. .+.+-+.+.+.+..++..++.++..+...-
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 344 5677899999999999999988765321 1111 111222 445566788999999999999998876421
Q ss_pred C-cHHHH--HhhCcHHHHHHH-HcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHH
Q 048757 431 D-HKGAI--ARAGGIKALVDL-IFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAA 506 (864)
Q Consensus 431 ~-~~~~i--~~~g~i~~L~~l-L~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~ 506 (864)
. .+... .-...++.|+.- + .+....++..+..++..++........+ ++.+...+.+ .++.++..++
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l---~~~k~~~~~~a~~~l~~~~~~~~~~~~~-----~e~l~~~l~~-Knpkv~~~~l 160 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGL---TSSRATTKTQSMSCILSLCGLDTSITQS-----VELVIPFFEK-KLPKLIAAAA 160 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHTSSSSHHH-----HHHHGGGGGC-SCHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHh---cCccHHHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHhc-cCHHHHHHHH
Confidence 1 11111 122345555543 3 3567788888888887765433221111 3445555565 5688898888
Q ss_pred HHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Q 048757 507 RALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSF 559 (864)
Q Consensus 507 ~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~ 559 (864)
..|..+...-.......... -..+++.+..++.+.+++||..|..++..+-.
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~-l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTF-LPELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHH-HHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcCCchhH-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88887764210000000000 01244567778899999999999999987743
No 244
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.45 E-value=1.8 Score=44.04 Aligned_cols=201 Identities=12% Similarity=0.064 Sum_probs=147.2
Q ss_pred HHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-ch----HHHHhcCcHHHHHHHHHccCchhHHHHHHHHHH
Q 048757 436 IARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CS----LEVARAGGVHALVMLARSFMFEGVQEQAARALA 510 (864)
Q Consensus 436 i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~----~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~ 510 (864)
+...+.+..|+..|.. -+-+.+..++.+..++.+... .+ ..+.. -...|..++...+.+++-..+-..|+
T Consensus 74 i~~~dll~~Li~~l~~---L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLR 148 (341)
T 1upk_A 74 LYNSGLLSTLVADLQL---IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLR 148 (341)
T ss_dssp HHHHSHHHHHHHTGGG---SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHhCHHHHHHHhccc---CCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHH
Confidence 4566778888887754 677889999999999887643 21 22222 35555666666666777777777788
Q ss_pred HHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcC-ChhhHHHHHHC---CChHHHHHHHHhcCCC
Q 048757 511 NLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSF-DDRNREAIAAA---GGVEALVALVRSCSSS 586 (864)
Q Consensus 511 ~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~-~~~~~~~i~~~---~~i~~Lv~lL~~~~~~ 586 (864)
.... .+.....+...+.+..+.+..+.++-++...|..++..+-. +.......... ......-.+|.+ +
T Consensus 149 ecir----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S---~ 221 (341)
T 1upk_A 149 ECIR----HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS---E 221 (341)
T ss_dssp HHHT----SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC---S
T ss_pred HHHH----hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcC---C
Confidence 7777 45566667777788899999999999999999999986633 33333333332 246667777776 8
Q ss_pred CHHHHHHHHHHHHHhccCchhhHH----hhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCccc
Q 048757 587 SQGLQERAAGALWGLSLSEANSIA----IGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGN 648 (864)
Q Consensus 587 ~~~v~~~A~~aL~~L~~~~~~~~~----i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~ 648 (864)
+--++..++..|+.+-.+..+... +.+..-+..++.+|++.+..++..|-.+..-+..+|..
T Consensus 222 NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K 287 (341)
T 1upk_A 222 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNK 287 (341)
T ss_dssp SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSC
T ss_pred cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCC
Confidence 999999999999999877555433 33456788999999999999999999999988776653
No 245
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=94.26 E-value=0.022 Score=53.61 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=23.6
Q ss_pred cCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCC
Q 048757 108 PKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGT 166 (864)
Q Consensus 108 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c 166 (864)
++|++|+++++. ++.-. .....++++|++|+|+++. ++. ..+.++++|++|+++++
T Consensus 33 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 455555555554 32110 1112335555555555542 221 11224455555555443
No 246
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.25 E-value=0.0078 Score=65.27 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=27.0
Q ss_pred hcCCCccEEeccCCCC-------CCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC
Q 048757 131 KQCRQLVEVGFIDSGG-------VDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 131 ~~~~~L~~L~l~~c~~-------i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~ 191 (864)
.+|++|+.+++.+... +.+..+.+|++|+.+++.. .++.-+- ....+|++|+.+.+..
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~-~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQ-GLLGGNRKVTQLTIPA 332 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECT-TTTTTCCSCCEEEECT
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhh-hhhcCCCCccEEEECc
Confidence 3466666666654321 3334444666666666543 1221111 1123556666666654
No 247
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=94.11 E-value=1.2 Score=54.29 Aligned_cols=217 Identities=12% Similarity=-0.020 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccC--CCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHH
Q 048757 411 TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWS--SWNDGVLERAAGALANLAADDK-CSLEVARAGGVH 487 (864)
Q Consensus 411 ~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~--~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~ 487 (864)
.+...++.++.+++.++....... ...++.++.++.... +.++.++..++++++.++..-. ... .-...++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~--~l~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA--YIPPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHH
Confidence 455688999999999977432111 234555665553333 2478899999999998874211 111 0112355
Q ss_pred HHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhh--ccChHHHHHHHhcC--CCHHHHHHHHHHHHHhcCC--h
Q 048757 488 ALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGL--ETGALEALVQLTFS--KHEGVRQEAAGALWNLSFD--D 561 (864)
Q Consensus 488 ~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~--~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~Ls~~--~ 561 (864)
.++..+ + +.++..|+.++.+++... +..+. -...+..+..++.. -+.+.+..+..++..++.. +
T Consensus 550 ~l~~~l-~---~~v~~~A~~al~~l~~~~------~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~ 619 (971)
T 2x1g_F 550 LLVRGL-N---SSMSAQATLGLKELCRDC------QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP 619 (971)
T ss_dssp HHHHHH-H---SSCHHHHHHHHHHHHHHC------HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHh-C---hHHHHHHHHHHHHHHHHH------HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 566666 2 678999999999999731 12111 12344555666666 3577888888888887653 1
Q ss_pred hhHHHHHHCCChHHHHHHHHhcC-CC--CHHHHHHHHHHHHHhcc---C--ch---h------hH--HhhhcCCHHHHHH
Q 048757 562 RNREAIAAAGGVEALVALVRSCS-SS--SQGLQERAAGALWGLSL---S--EA---N------SI--AIGREGGVAPLIA 622 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~~~-~~--~~~v~~~A~~aL~~L~~---~--~~---~------~~--~i~~~~~i~~Lv~ 622 (864)
+....... ..+++++..+.... .. +++.+.....++..++. . +. . .. .-.....++.+..
T Consensus 620 ~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 698 (971)
T 2x1g_F 620 EEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKR 698 (971)
T ss_dssp THHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHH
Confidence 32222222 13444444433210 11 44444445555544432 1 10 0 00 1112457777777
Q ss_pred HHcc--CCHHHHHHHHHHHHHhcC
Q 048757 623 LARS--AVVDVHETAAGALWNLAF 644 (864)
Q Consensus 623 lL~~--~~~~v~~~a~~aL~~L~~ 644 (864)
++.. .++.+.+.+++++.+++.
T Consensus 699 ~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 699 IAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHHHHH
Confidence 7754 367899999999999764
No 248
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.81 E-value=0.56 Score=45.59 Aligned_cols=178 Identities=15% Similarity=0.045 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccC----chhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHH
Q 048757 460 LERAAGALANLAADDKCSLEVARAGGVHALVMLARSFM----FEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEAL 535 (864)
Q Consensus 460 ~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~----~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L 535 (864)
..+|...|-.++.+++.+..+.+....-.|..++...+ .+.+|..+++.++.|...+ .++....+.+.+.+|..
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~d--d~eVi~fLL~tEiiplC 150 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTD--EQEVINFLLTTEIIPLC 150 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGC--CHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccC--cHHHHHHHHhhhHHHHH
Confidence 35677777888889999999999998888888887642 2678888999999998753 45677778889999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHC--------CChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchh
Q 048757 536 VQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAA--------GGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEAN 607 (864)
Q Consensus 536 ~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~--------~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~ 607 (864)
++.++.+++--+.-|..++..+-.++.+...+... ..+..++.-+.. .+++.+..+..++-..|+.++..
T Consensus 151 Lrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~--~ps~RLLKhiircYlRLsdn~ra 228 (268)
T 2fv2_A 151 LRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK--EPSARLLKHVVRCYLRLSDNPRA 228 (268)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT--SCCHHHHHHHHHHHHHHTTSHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999887777665444321 123333333332 47899999999999999999888
Q ss_pred hHHhhhcCCH----HHHHHHHccCCHHHHHHHHHHHHHh
Q 048757 608 SIAIGREGGV----APLIALARSAVVDVHETAAGALWNL 642 (864)
Q Consensus 608 ~~~i~~~~~i----~~Lv~lL~~~~~~v~~~a~~aL~~L 642 (864)
|..+.+.-.- ..+..+++ +|+.++..-...+.|+
T Consensus 229 r~aL~~~LP~~Lrd~tf~~~l~-~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 229 REALRQCLPDQLKDTTFAQVLK-DDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHHHHHHSCGGGTSSTTHHHHT-SCHHHHHHHHHHHHHS
T ss_pred HHHHHHhCcHHhhChHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 8777642110 11223333 5677777776666665
No 249
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.57 E-value=0.019 Score=53.76 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=5.3
Q ss_pred CCCCcCEEEEeC
Q 048757 154 NLSSVRYLSIAG 165 (864)
Q Consensus 154 ~~~~L~~L~l~~ 165 (864)
++++|++|++++
T Consensus 76 ~l~~L~~L~L~~ 87 (170)
T 3g39_A 76 KLTQLTQLSLND 87 (170)
T ss_dssp TCTTCCEEECCS
T ss_pred CCCCCCEEECCC
Confidence 344444444444
No 250
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=93.55 E-value=0.019 Score=53.97 Aligned_cols=82 Identities=15% Similarity=0.206 Sum_probs=34.7
Q ss_pred CCccEEeccCCCCCC---HHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCc
Q 048757 134 RQLVEVGFIDSGGVD---EAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLK 210 (864)
Q Consensus 134 ~~L~~L~l~~c~~i~---~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~ 210 (864)
++|++|+|+++. ++ ...+.++++|++|+++++. ++.. .......+++|+.|+++++.... .....+..+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i-~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAI-PTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCcc-ChhHhCCcchhhEEECCCCccce-eCHHHhccccCCC
Confidence 455555555543 22 1223355555555555542 2210 01112345555555555522210 0001233445555
Q ss_pred EEEccCCCC
Q 048757 211 VLIALNCPV 219 (864)
Q Consensus 211 ~L~~~~c~~ 219 (864)
.|++.+++.
T Consensus 109 ~L~L~~N~~ 117 (174)
T 2r9u_A 109 HIYLYNNPW 117 (174)
T ss_dssp EEECCSSCB
T ss_pred EEEeCCCCc
Confidence 555555543
No 251
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=93.47 E-value=1.7 Score=44.38 Aligned_cols=153 Identities=11% Similarity=0.024 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcHHHHH----HHHc-cCCHHHHHHHHHHHHHhcCCCCcHH
Q 048757 360 VRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGIDILA----DLAR-STNRLVAEEVVGGLWNLSVGEDHKG 434 (864)
Q Consensus 360 i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv----~lL~-~~~~~v~~~a~~aL~~Ls~~~~~~~ 434 (864)
+..+..++ +...+.+.-++..++-+..++.....+.+.+.-..++ ..+. ...+..+..+++++.|+-.++..+.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~ 183 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK 183 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence 45566666 5666777788888888888887777776554434444 2232 2356778999999999988887777
Q ss_pred HHHhhCcHHHHHHHHccc-CCCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHH
Q 048757 435 AIARAGGIKALVDLIFKW-SSWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANL 512 (864)
Q Consensus 435 ~i~~~g~i~~L~~lL~~~-~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L 512 (864)
.+... ...+++.+... .+.+..++..++..+.|++.... .+..=........+..++....+++....++.||.+|
T Consensus 184 ~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 184 LMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 77642 24444444321 34678999999999999975311 0000001113444555565556788889999999999
Q ss_pred hhc
Q 048757 513 VAH 515 (864)
Q Consensus 513 ~~~ 515 (864)
...
T Consensus 262 ~~~ 264 (304)
T 3ebb_A 262 ISD 264 (304)
T ss_dssp HTT
T ss_pred HhC
Confidence 974
No 252
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=93.32 E-value=0.062 Score=50.17 Aligned_cols=105 Identities=16% Similarity=0.138 Sum_probs=64.3
Q ss_pred cCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCC--CCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEE
Q 048757 110 LRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGG--VDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGL 187 (864)
Q Consensus 110 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~--i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L 187 (864)
.+.++++++. ++. +.. .-.++|++|+|+++.- +....+.++++|++|+++++. ++.. .......+++|+.|
T Consensus 11 ~~~l~~s~n~-l~~--ip~--~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l-~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKS-LAS--VPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVL-PAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSC-CSS--CCS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCC-CTTTTTTCTTCCEE
T ss_pred CCEEEeCCCC-cCc--cCc--cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCcc-ChhhccCCCCCCEE
Confidence 4566666654 322 100 1136788888887642 223445588889999998864 4321 11223578999999
Q ss_pred ecCCCCCCHHHHHHHhcCCCCCcEEEccCCCCccc
Q 048757 188 DTSRTNINLSSVTRLLSSSRNLKVLIALNCPVFEA 222 (864)
Q Consensus 188 ~l~~~~~~~~~l~~~~~~~~~L~~L~~~~c~~~~~ 222 (864)
+++++....- ....+..+++|+.|++.+++..-.
T Consensus 84 ~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 84 SLNDNQLKSI-PRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp ECCSSCCCCC-CTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ECCCCccCEe-CHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999433210 012356679999999999876543
No 253
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.30 E-value=16 Score=44.23 Aligned_cols=310 Identities=9% Similarity=0.012 Sum_probs=163.8
Q ss_pred HHHHHHHH---ccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 048757 311 ATLLLSLM---ESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 311 v~~L~~lL---~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
++.++..+ .++++.++..++++++.++.--..+ . -.-...++.++..|.+ +.++..|+.++.+++.
T Consensus 488 l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~-------~--~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~ 556 (963)
T 2x19_B 488 VPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH-------P--VMINSVLPLVLHALGN--PELSVSSVSTLKKICR 556 (963)
T ss_dssp HHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC-------H--HHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC-------H--HHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHH
Confidence 34455544 2356889999999999986321111 1 1235788888888855 7899999999999985
Q ss_pred CchhHHHHHh--cCcHHHHHHHHcc--CCHHHHHHHHHHHHHhcCCC--CcHHHHHhhCcHHHHHHHHccc--CCCCHHH
Q 048757 388 DSKVAKAVSE--NGGIDILADLARS--TNRLVAEEVVGGLWNLSVGE--DHKGAIARAGGIKALVDLIFKW--SSWNDGV 459 (864)
Q Consensus 388 ~~~~~~~i~~--~g~i~~Lv~lL~~--~~~~v~~~a~~aL~~Ls~~~--~~~~~i~~~g~i~~L~~lL~~~--~~~~~~v 459 (864)
+ .+..+.. ...++.|..++.. .+...+..+..+++.+...- +.+....+ ..++++...+... ...+++.
T Consensus 557 ~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~~ 633 (963)
T 2x19_B 557 E--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSN 633 (963)
T ss_dssp H--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHHHHHHSSCSCHHH
T ss_pred H--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHhCCCCHHH
Confidence 2 2222211 1123334455554 35788888999999886532 22222222 2444444444321 1124444
Q ss_pred HH---HHHHHHHHhcCC----Cc----------------ch--HHHHhcCcHHHHHHHHHcc-CchhHHHHHHHHHHHHh
Q 048757 460 LE---RAAGALANLAAD----DK----------------CS--LEVARAGGVHALVMLARSF-MFEGVQEQAARALANLV 513 (864)
Q Consensus 460 ~~---~a~~~L~~L~~~----~~----------------~~--~~i~~~~~i~~Lv~ll~~~-~~~~v~~~a~~aL~~L~ 513 (864)
+. ....+|..+... .. .+ ..-.....++.+..++... .+..+.+.++.++..+.
T Consensus 634 ~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~ 713 (963)
T 2x19_B 634 KLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSV 713 (963)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Confidence 33 333344333321 00 00 0112233455555666432 34678888888888886
Q ss_pred hcCCCCcccchhhhccChHHHHHHHh----cC-CCHHHHHHHHHHHHHhcCChhhHHHHHH--CCChHHHHHHHHhcCCC
Q 048757 514 AHGDSNSNNAAVGLETGALEALVQLT----FS-KHEGVRQEAAGALWNLSFDDRNREAIAA--AGGVEALVALVRSCSSS 586 (864)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~i~~L~~lL----~~-~~~~v~~~a~~~L~~Ls~~~~~~~~i~~--~~~i~~Lv~lL~~~~~~ 586 (864)
..-. +.. ...++.++..+ .. +.+.+.......+.....++.....+.. ...+...+.++......
T Consensus 714 ~~~~--~~~------~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 785 (963)
T 2x19_B 714 KTLL--DDF------APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRD 785 (963)
T ss_dssp HHSS--STT------GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred Hhhc--ccc------cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 5311 111 12244444332 22 2333333333333322222211111211 11244445555532224
Q ss_pred CHHHHHHHHHHHHHhccC-chhhHHhhhcCC-HH----HHHHHHccCCHHHHHHHHHHHHHhcCC
Q 048757 587 SQGLQERAAGALWGLSLS-EANSIAIGREGG-VA----PLIALARSAVVDVHETAAGALWNLAFN 645 (864)
Q Consensus 587 ~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~-i~----~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 645 (864)
.|+++......+..+... +.. +..... ++ .++..++..+..+...++..+.++...
T Consensus 786 ~pd~~~~~f~ll~~~~~~~~~~---~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~ 847 (963)
T 2x19_B 786 HPDIVDSFMQLLAQALKRKPDL---FLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPR 847 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGG---GGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred CchHHHHHHHHHHHHHHhCcHH---HcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence 699999999999887754 221 222222 44 445566788899999999999999753
No 254
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.88 E-value=0.9 Score=55.42 Aligned_cols=297 Identities=9% Similarity=-0.018 Sum_probs=148.2
Q ss_pred CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh---c--CCCHHHHHHHHHHHHHHhCC-chhHHH
Q 048757 321 SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA---R--SPPEGLQSEVAKAIANLSVD-SKVAKA 394 (864)
Q Consensus 321 ~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL---~--~~~~~~~~~a~~~L~~L~~~-~~~~~~ 394 (864)
.+-..++.|..+++.++.+-.... ...++.++.++ . ++++.++..++++++.++.. .+....
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~------------~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~ 543 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE------------KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAY 543 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----C
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh------------hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 455678888889999875543211 12334444333 3 34789999999999997752 111111
Q ss_pred HHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHh--hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcC
Q 048757 395 VSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIAR--AGGIKALVDLIFKWSSWNDGVLERAAGALANLAA 472 (864)
Q Consensus 395 i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~--~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~ 472 (864)
+ ...++.|+..+ + +.++..|+.++.+++.. .+..+.. ...+..+.+++.+ ...+...+..+..+++.++.
T Consensus 544 l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~-~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 544 I--PPAINLLVRGL-N--SSMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNT-GRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp H--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHHHH
Confidence 1 12356666666 3 67899999999999842 3344432 2344455566653 12356778888888888865
Q ss_pred CC--cchHHHHhcCcHHHHHHHH----HccC-chhHHHHHHHHHHHHh---hcCCCC--c-------ccchhhhccChHH
Q 048757 473 DD--KCSLEVARAGGVHALVMLA----RSFM-FEGVQEQAARALANLV---AHGDSN--S-------NNAAVGLETGALE 533 (864)
Q Consensus 473 ~~--~~~~~i~~~~~i~~Lv~ll----~~~~-~~~v~~~a~~aL~~L~---~~~~~~--~-------~~~~~~~~~~~i~ 533 (864)
.- +...... ...++.++..+ .... +++.+.....++..|+ ..-... + .....-.....++
T Consensus 616 ~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 694 (971)
T 2x1g_F 616 LLRPEEIPKYL-DIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMP 694 (971)
T ss_dssp TSCTTHHHHHH-HHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHH
T ss_pred hCCHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHH
Confidence 42 2221111 12233343333 2211 2323344444444443 210000 0 0001111234666
Q ss_pred HHHHHhcC--CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC----chh
Q 048757 534 ALVQLTFS--KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS----EAN 607 (864)
Q Consensus 534 ~L~~lL~~--~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~----~~~ 607 (864)
.+..++.. .+..+.+.+++++..++..-. ..+ ...++.+++.+.......+ . ..+++.++.+... +..
T Consensus 695 ~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~--~~~--~p~l~~~~~~l~~~~~~~~-~-~~~l~l~~~~i~~~~~~~~~ 768 (971)
T 2x1g_F 695 IFKRIAEMWVEEIDVLEAACSAMKHAITNLR--SSF--QPMLQDLCLFIVASFQTRC-C-APTLEISKTAIVMFFKDEGC 768 (971)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH--C----CTHHHHHHHHHHHHCC--C-C-HHHHHHHHHHHTTCCC----
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHhhh--hhc--cccHHHHHHHHHHHHhcCC-c-hHHHHHHHHHHHHhCCCcch
Confidence 66666643 477899999999998754210 001 1236666666643211111 1 2345555554432 222
Q ss_pred hHHhhh--cCCHHHHHHHHcc-------CCHHHHHHHHHHHHHhcC
Q 048757 608 SIAIGR--EGGVAPLIALARS-------AVVDVHETAAGALWNLAF 644 (864)
Q Consensus 608 ~~~i~~--~~~i~~Lv~lL~~-------~~~~v~~~a~~aL~~L~~ 644 (864)
...+.+ .......+.++.. .++++++.....+..+..
T Consensus 769 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~ 814 (971)
T 2x1g_F 769 KPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIK 814 (971)
T ss_dssp -HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHH
Confidence 222222 1123334444443 257788887777777764
No 255
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.83 E-value=0.77 Score=45.70 Aligned_cols=144 Identities=11% Similarity=0.068 Sum_probs=93.7
Q ss_pred cchhhhhhccCccHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCc
Q 048757 263 FQNWRKLKVRDRISDEIVSWIERVLSHSLMRISKKNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQ 342 (864)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~ 342 (864)
+..|......+.+..- ....+.++.+.+-.+...+ ..+...-..--+|.|+.-+.++.+.+|..+..++..+....
T Consensus 88 l~kw~~lr~~d~N~~v-~~~~L~~L~~l~~~l~~~~-y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~-- 163 (266)
T 2of3_A 88 LLKWCTLRFFETNPAA-LIKVLELCKVIVELIRDTE-TPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-- 163 (266)
T ss_dssp HHHHHHHHTTSCCHHH-HHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC--
Confidence 3556554333333332 2223455555544443332 22222111122799999998889999999998887764211
Q ss_pred ccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcCcH---HHHHHHHccCCHHHHHHH
Q 048757 343 NAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKVAKAVSENGGI---DILADLARSTNRLVAEEV 419 (864)
Q Consensus 343 ~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i---~~Lv~lL~~~~~~v~~~a 419 (864)
--...++.++..+++.+...+..++..+..+-...... ...++ +.+.+++.+.|..|+..|
T Consensus 164 ------------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aA 227 (266)
T 2of3_A 164 ------------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAA 227 (266)
T ss_dssp ------------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHH
T ss_pred ------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcCCCHHHHHHH
Confidence 11235677888899999999999999999876522111 23468 999999999999999999
Q ss_pred HHHHHHh
Q 048757 420 VGGLWNL 426 (864)
Q Consensus 420 ~~aL~~L 426 (864)
..++..+
T Consensus 228 l~~lve~ 234 (266)
T 2of3_A 228 INVLVAC 234 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 256
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=92.76 E-value=22 Score=43.03 Aligned_cols=102 Identities=11% Similarity=-0.098 Sum_probs=66.4
Q ss_pred CCHHHHHHHHHHHHHhccCch-hhHHhhhcCCHHHHHHHHcc-----CCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHH
Q 048757 586 SSQGLQERAAGALWGLSLSEA-NSIAIGREGGVAPLIALARS-----AVVDVHETAAGALWNLAFNPGNALCIVEGGGVQ 659 (864)
Q Consensus 586 ~~~~v~~~A~~aL~~L~~~~~-~~~~i~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~ 659 (864)
.++..+++++++++.++.... ....-.-..+++.|+.++.. ....++..+++++++.+..-....... ...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L-~~vl~ 543 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVIL 543 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH-HHHHH
Confidence 579999999999999987632 21222223467788888863 234456678899988775211111111 13445
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 660 ALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 660 ~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
.|.+.+.+++ +.++.+|++|+.+++....
T Consensus 544 ~L~~~l~~~~-~~v~~~A~~al~~l~~~c~ 572 (1023)
T 4hat_C 544 KLFEFMHETH-EGVQDMACDTFIKIVQKCK 572 (1023)
T ss_dssp HHHHHTTCSC-HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhcCC-HHHHHHHHHHHHHHHHHHH
Confidence 5666665554 8899999999999988654
No 257
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.52 E-value=0.32 Score=52.69 Aligned_cols=189 Identities=17% Similarity=0.007 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHH
Q 048757 457 DGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALV 536 (864)
Q Consensus 457 ~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~ 536 (864)
..||+.|+.+|+.+ ..-+.. ...+..|+..+.. ...+++..++-.|.++... ... -.++++.++
T Consensus 242 APVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~-~~WEVRHGGLLGLKYL~DL------L~~---Ld~Vv~aVL 305 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDS-GDWQVQFSGLIALGYLKEF------VED---KDGLCRKLV 305 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGC-SCHHHHHHHHHHHHHTGGG------CCC---HHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCC-CCeeehhhhHHHHHHHHHH------HHH---HHHHHHHHH
Confidence 37899999999998 542221 3445555554455 4588999999999998221 111 246788888
Q ss_pred HHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCC
Q 048757 537 QLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGG 616 (864)
Q Consensus 537 ~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~ 616 (864)
..|.+.+.+||..|+.+|..++ .++... ..+..+.+.|.+...-+ ......+..|+.|+..+.. .-.....
T Consensus 306 ~GL~D~DDDVRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLS-ASTgSVMdLLAkL~s~p~~--a~~dp~L 376 (800)
T 3oc3_A 306 SLLSSPDEDIKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELIS-VSKTSNLSLLTKIYRENPE--LSIPPER 376 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCC-TTHHHHHHHHHHHHHHCTT--CCCCSGG
T ss_pred hhcCCcccHHHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccc-hhhHHHHHHHHHHHcCCcc--cccChHH
Confidence 8899999999999999999998 222211 12344445555411111 1122334445555443321 1122477
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHH-HHhcCCCcHHHHHHHHHHH
Q 048757 617 VAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALI-HLCSSSLSKMARFMAALAL 681 (864)
Q Consensus 617 i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~-~ll~~~~~~~~r~~aa~aL 681 (864)
+|.|..++++.-..||..++.+|..+. + ...+..+. .++-.++ +.++..+..+.
T Consensus 377 VPRL~PFLRHtITSVR~AVL~TL~tfL----~------~~~LRLIFQNILLE~n-eeIl~lS~~VW 431 (800)
T 3oc3_A 377 LKDIFPCFTSPVPEVRTSILNMVKNLS----E------ESIDFLVAEVVLIEEK-DEIREMAIKLL 431 (800)
T ss_dssp GGGTGGGGTCSSHHHHHHHHHHTTTCC----C------HHHHHHHHHHHHHCSC-HHHHHHHHHHH
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHHHH----h------hhHHHHHHHHHHhCCc-HHHHHHHHHHH
Confidence 899999999999999999999998887 1 12233333 3444554 66776665544
No 258
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=92.48 E-value=1.3 Score=44.90 Aligned_cols=186 Identities=12% Similarity=0.012 Sum_probs=111.6
Q ss_pred HHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhc-cChHHHHHHHhcCCCHHHHHHHHHHHHHhcCChh----h
Q 048757 489 LVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLE-TGALEALVQLTFSKHEGVRQEAAGALWNLSFDDR----N 563 (864)
Q Consensus 489 Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~----~ 563 (864)
|-+.+.+ .+...|..+...|..+..........-..+.. ....+.+-..+.+.+..++..++.++..++..-. .
T Consensus 14 l~e~l~s-k~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTY-KLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhccc-CcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4455666 46888999999988876532110000000111 1234455667889999999999999988765311 1
Q ss_pred HHH--HHHCCChHHHHHH-HHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHH
Q 048757 564 REA--IAAAGGVEALVAL-VRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALW 640 (864)
Q Consensus 564 ~~~--i~~~~~i~~Lv~l-L~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~ 640 (864)
+.. ..-...++.|++= +.+ ..+.++..|..++..++....... ..++.++..+++.++.++..++..|.
T Consensus 93 ~~~~~~~~~~~l~~lveK~l~~---~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITLISTWTPLLVEKGLTS---SRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 111 1112245555542 443 778899999888876543211111 12456667788999999999998888
Q ss_pred HhcCC--cc--cHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhh
Q 048757 641 NLAFN--PG--NALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIV 685 (864)
Q Consensus 641 ~L~~~--~~--~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~ 685 (864)
++... .. +....+ ...++.+..++.+++ +.||..|...+..+-
T Consensus 165 ~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~-~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGD-RNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 87541 11 111111 134456777888886 899999988887554
No 259
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.36 E-value=1.3 Score=43.07 Aligned_cols=145 Identities=12% Similarity=0.062 Sum_probs=107.7
Q ss_pred HHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCC-----HHHHHHHHHHHHHhcCC--hhhHHHHHHCCChHH
Q 048757 503 EQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKH-----EGVRQEAAGALWNLSFD--DRNREAIAAAGGVEA 575 (864)
Q Consensus 503 ~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~Ls~~--~~~~~~i~~~~~i~~ 575 (864)
.+|+..|..+++ +++.|..+.+....-.|..+|+..+ +.+|..+.+.++.+... ++....+.+.+.+|.
T Consensus 74 cnaLaLlQcvAs----hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiipl 149 (268)
T 2fv2_A 74 CNALALLQCVAS----HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPL 149 (268)
T ss_dssp HHHHHHHHHHHH----CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHc----CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHH
Confidence 356677788888 5678888888888888888887643 56899999999999865 345666778889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh--------cCCHHHHHH-HHccCCHHHHHHHHHHHHHhcCCc
Q 048757 576 LVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR--------EGGVAPLIA-LARSAVVDVHETAAGALWNLAFNP 646 (864)
Q Consensus 576 Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~--------~~~i~~Lv~-lL~~~~~~v~~~a~~aL~~L~~~~ 646 (864)
.++.+.. +++-.+.-|..++..+-.++..-..+.. ...+..++. +.+.+++.+..+++++-.+|+.++
T Consensus 150 CLrime~---GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 150 CLRIMES---GSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHH---SCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHhh---ccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 9999998 9999999999999987665544333222 112223332 335677888889999999999888
Q ss_pred ccHHHHHh
Q 048757 647 GNALCIVE 654 (864)
Q Consensus 647 ~~~~~i~~ 654 (864)
..++.+..
T Consensus 227 rar~aL~~ 234 (268)
T 2fv2_A 227 RAREALRQ 234 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765553
No 260
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=92.32 E-value=13 Score=44.83 Aligned_cols=102 Identities=15% Similarity=-0.027 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHhccC-chhhHHh-hhcC----CHHHHHHHHc-----cCCHHHHHHHHHHHHHhcCCcccHHHHHh
Q 048757 586 SSQGLQERAAGALWGLSLS-EANSIAI-GREG----GVAPLIALAR-----SAVVDVHETAAGALWNLAFNPGNALCIVE 654 (864)
Q Consensus 586 ~~~~v~~~A~~aL~~L~~~-~~~~~~i-~~~~----~i~~Lv~lL~-----~~~~~v~~~a~~aL~~L~~~~~~~~~i~~ 654 (864)
.++...+.|+.+|+.++.. ......+ .... .++.+..+++ .+++.|+..+++++++.+..-.. .
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~-----~ 529 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY-----E 529 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT-----C
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc-----C
Confidence 4688899999999999875 2211111 1112 3345555555 57799999999999999873221 1
Q ss_pred CCcHHHHHHHhcC-----CCcHHHHHHHHHHHHHhhcCCccce
Q 048757 655 GGGVQALIHLCSS-----SLSKMARFMAALALAYIVDGRMEDI 692 (864)
Q Consensus 655 ~g~v~~L~~ll~~-----~~~~~~r~~aa~aL~~l~~~~~~~~ 692 (864)
...++.++..+-+ ..++.+|..|+.++.++....+...
T Consensus 530 ~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L 572 (980)
T 3ibv_A 530 SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQV 572 (980)
T ss_dssp CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTC
T ss_pred chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHh
Confidence 2345555554433 1236799999999999988776543
No 261
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=91.74 E-value=1.9 Score=46.91 Aligned_cols=245 Identities=13% Similarity=0.022 Sum_probs=147.9
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh--cC-----CC---HHHHHHHH
Q 048757 310 GATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA--RS-----PP---EGLQSEVA 379 (864)
Q Consensus 310 gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL--~~-----~~---~~~~~~a~ 379 (864)
-.+.|+.-|-++.=++|.-|+.+|+.+.......+.. ..-.+....-.++-.| +. +| ..||+.|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR-----~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA 249 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDI-----QIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA 249 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----C-----CCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCce-----eccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence 3466777777888899999999998876544311000 0000001122222222 21 11 46999999
Q ss_pred HHHHHHhCC-chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHH
Q 048757 380 KAIANLSVD-SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDG 458 (864)
Q Consensus 380 ~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~ 458 (864)
.+|+.+ .. ++- ...+..++..+..+.-+++..++-.|..+.. .-.. -.+.++.++.-|. +.+++
T Consensus 250 QtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~D---LL~~--Ld~Vv~aVL~GL~---D~DDD 314 (800)
T 3oc3_A 250 YLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKE---FVED--KDGLCRKLVSLLS---SPDED 314 (800)
T ss_dssp HHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGG---GCCC--HHHHHHHHHHHTT---CSSHH
T ss_pred HHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHH---HHHH--HHHHHHHHHhhcC---CcccH
Confidence 999998 52 221 4556666666677788899999999998821 1111 2345677777775 47889
Q ss_pred HHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCc-hhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHH
Q 048757 459 VLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMF-EGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQ 537 (864)
Q Consensus 459 v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~-~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~ 537 (864)
|+..|+.+|..++ .++... ..+..+-..|.+.++ ..-.......|..|+.++.. .......+|.|..
T Consensus 315 VRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~------a~~dp~LVPRL~P 382 (800)
T 3oc3_A 315 IKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE------LSIPPERLKDIFP 382 (800)
T ss_dssp HHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT------CCCCSGGGGGTGG
T ss_pred HHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc------cccChHHHHHHHh
Confidence 9999999998888 221111 112333334443221 12233456677888876431 1223478999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHH-HHHHhcCCCCHHHHHHHHHHHH
Q 048757 538 LTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALV-ALVRSCSSSSQGLQERAAGALW 599 (864)
Q Consensus 538 lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv-~lL~~~~~~~~~v~~~A~~aL~ 599 (864)
++++.-..||.+++.+|..+. ..+. +..+. .+|-. ++++++..+..+..
T Consensus 383 FLRHtITSVR~AVL~TL~tfL-~~~~---------LRLIFQNILLE---~neeIl~lS~~VWk 432 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS-EESI---------DFLVAEVVLIE---EKDEIREMAIKLLK 432 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC-CHHH---------HHHHHHHHHHC---SCHHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH-hhhH---------HHHHHHHHHhC---CcHHHHHHHHHHHH
Confidence 999999999999999998886 2111 11111 23333 67888887777663
No 262
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.50 E-value=3.1 Score=42.44 Aligned_cols=155 Identities=12% Similarity=0.018 Sum_probs=98.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHH-Hhc-CCCCHHHHHHHHHHHHHhccCchhh
Q 048757 531 ALEALVQLTFSKHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALV-RSC-SSSSQGLQERAAGALWGLSLSEANS 608 (864)
Q Consensus 531 ~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL-~~~-~~~~~~v~~~A~~aL~~L~~~~~~~ 608 (864)
.+..+.+++ ....+.+-.++.+++-+..++.....+.+.+.-..++..+ ... ....+..+..++++++|+-.++..+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~ 182 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ 182 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence 345555555 4555566677777777766666555554443334444322 210 1346778999999999999998888
Q ss_pred HHhhhc--CCHHHHHHHHccCCHHHHHHHHHHHHHhcCCc---ccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 048757 609 IAIGRE--GGVAPLIALARSAVVDVHETAAGALWNLAFNP---GNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAY 683 (864)
Q Consensus 609 ~~i~~~--~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~---~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~ 683 (864)
..+... ..++.+...+.+.+..++..++..+.|++... ...+. ....+..+..++....+++....+..||++
T Consensus 183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 777652 23344444445678899999999999998621 11111 111445556666665567788888889998
Q ss_pred hhcCC
Q 048757 684 IVDGR 688 (864)
Q Consensus 684 l~~~~ 688 (864)
+..+.
T Consensus 261 L~~~~ 265 (304)
T 3ebb_A 261 LISDD 265 (304)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 88664
No 263
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.42 E-value=2.2 Score=41.10 Aligned_cols=134 Identities=14% Similarity=0.077 Sum_probs=90.6
Q ss_pred HHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHH-HhcCCCHHHHHHHHHHHHHhcC--ChhhH
Q 048757 488 ALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQ-LTFSKHEGVRQEAAGALWNLSF--DDRNR 564 (864)
Q Consensus 488 ~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~Ls~--~~~~~ 564 (864)
.+...|-..+..++|..|+..|..+ .. ....++.+.. +-.+++-.|++.++.++..++. +++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~------------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe-- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK------------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK-- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TT------------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cC------------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH--
Confidence 3444444445578899999887766 21 1235555655 5556788999999999998863 222
Q ss_pred HHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 565 EAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 565 ~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
..++.+.....+ +++.+|..|...+...+..+..+ ..-.-.++.|-.+..+++..|+....++|..++.
T Consensus 139 ------~~l~~~~~W~~d---~n~~VRR~Ase~~rpW~~~~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 ------KALPIIDEWLKS---SNLHTRRAATEGLRIWTNRPYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ------TTHHHHHHHHHC---SSHHHHHHHHHHTCSGGGSTTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHhcC---CCHHHHHHHHHhhHHHhccchhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 256788888887 99999999998876544321110 0011234555556667889999999999999997
Q ss_pred -Ccc
Q 048757 645 -NPG 647 (864)
Q Consensus 645 -~~~ 647 (864)
+|+
T Consensus 208 ~~Pd 211 (240)
T 3l9t_A 208 KFPD 211 (240)
T ss_dssp TCHH
T ss_pred hCHH
Confidence 444
No 264
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=91.42 E-value=0.057 Score=57.20 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=48.0
Q ss_pred HhcCcCcCeeeecc-cCCCcHHHHHHHHhcCCCccEEeccCCCCCCH---HHhcCCCCcCEEEEeCCCCCCHHHHHHHHh
Q 048757 104 AYCCPKLRRLWLSG-VREVNGDAINALAKQCRQLVEVGFIDSGGVDE---AALENLSSVRYLSIAGTRNLNWSSAAIAWS 179 (864)
Q Consensus 104 ~~~~~~L~~L~l~~-~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~ 179 (864)
...+++|++|+|++ +. ++.-. .....++++|++|+|+++. ++. ..+.++++|++|+|+++. ++.. ...+..
T Consensus 27 l~~~~~L~~L~l~~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~-~~~~~~ 101 (347)
T 2ifg_A 27 LPGAENLTELYIENQQH-LQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESL-SWKTVQ 101 (347)
T ss_dssp SCSCSCCSEEECCSCSS-CCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCC-CSTTTC
T ss_pred CCCCCCeeEEEccCCCC-CCCcC-hhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-ccee-CHHHcc
Confidence 34567788888886 44 43211 1123457888888888864 443 344578888888888753 3311 011122
Q ss_pred cCCCCcEEecCC
Q 048757 180 KLTSLVGLDTSR 191 (864)
Q Consensus 180 ~~~~L~~L~l~~ 191 (864)
.++ |+.|++.+
T Consensus 102 ~~~-L~~l~l~~ 112 (347)
T 2ifg_A 102 GLS-LQELVLSG 112 (347)
T ss_dssp SCC-CCEEECCS
T ss_pred cCC-ceEEEeeC
Confidence 233 88888877
No 265
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.66 E-value=0.14 Score=55.13 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=67.7
Q ss_pred hCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeeccc-CCCcHHHHHHHHhcCCCccEEeccC-CCCCCHHHhcC
Q 048757 77 ARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGV-REVNGDAINALAKQCRQLVEVGFID-SGGVDEAALEN 154 (864)
Q Consensus 77 ~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~l~~l~~~~~~L~~L~l~~-c~~i~~~~~~~ 154 (864)
..|.+|+.+.+. .....+.+. ....|+.|+.+.+... ..+.+. ...+|++|+.++|.. ...|.+.++.+
T Consensus 262 ~~c~~L~~i~lp-~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF~~ 332 (394)
T 4gt6_A 262 DSCAYLASVKMP-DSVVSIGTG----AFMNCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEGITQILDDAFAG 332 (394)
T ss_dssp TTCSSCCEEECC-TTCCEECTT----TTTTCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTT
T ss_pred eecccccEEecc-cccceecCc----ccccccccccccCCCcccccCce----eecCCCCcCEEEeCCcccEehHhHhhC
Confidence 457888888882 222333322 1246788888887542 223322 245688888888854 34455666778
Q ss_pred CCCcCEEEEeCC-CCCCHHHHHHHHhcCCCCcEEecCCCCCCHHHHHHHhcCCCCCcEEEc
Q 048757 155 LSSVRYLSIAGT-RNLNWSSAAIAWSKLTSLVGLDTSRTNINLSSVTRLLSSSRNLKVLIA 214 (864)
Q Consensus 155 ~~~L~~L~l~~c-~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~~~~~~~~L~~L~~ 214 (864)
|.+|+.+.|... ..+.+. ...+|++|+.+++.++.... ..+..+..|+.+.+
T Consensus 333 C~~L~~i~ip~sv~~I~~~----aF~~C~~L~~i~~~~~~~~~----~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 333 CEQLERIAIPSSVTKIPES----AFSNCTALNNIEYSGSRSQW----NAISTDSGLQNLPV 385 (394)
T ss_dssp CTTCCEEEECTTCCBCCGG----GGTTCTTCCEEEESSCHHHH----HTCBCCCCC-----
T ss_pred CCCCCEEEECcccCEEhHh----HhhCCCCCCEEEECCceeeh----hhhhccCCCCEEEe
Confidence 888888888532 223322 23578888888887643211 22344556666554
No 266
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=90.54 E-value=6.3 Score=38.43 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=94.1
Q ss_pred HHHHHhCCHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhCCchhHHHHHh-cCcHHHHHHHHccCCHHHHHHH
Q 048757 352 EAILRHGGVRLLLDLARS-----------PPEGLQSEVAKAIANLSVDSKVAKAVSE-NGGIDILADLARSTNRLVAEEV 419 (864)
Q Consensus 352 ~~i~~~~~i~~L~~lL~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a 419 (864)
+.+ ..+|+..|+..|.. .+...+..++.||..+..+......+.. ...+..|+..+.++++.++..+
T Consensus 38 ~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~ 116 (233)
T 2f31_A 38 QTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA 116 (233)
T ss_dssp HHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHH
T ss_pred HHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHH
Confidence 344 45666666666542 1356778899999999998876666665 4568888888999999999999
Q ss_pred HHHHHHhcCCCC--c-HHHHHh----------hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcc---h----HH
Q 048757 420 VGGLWNLSVGED--H-KGAIAR----------AGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKC---S----LE 479 (864)
Q Consensus 420 ~~aL~~Ls~~~~--~-~~~i~~----------~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~---~----~~ 479 (864)
+..|..+|..++ . ...+.+ ..-..++++.+.+ +.+.+.+..+...+-.+....+. | .+
T Consensus 117 leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~e 194 (233)
T 2f31_A 117 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSE 194 (233)
T ss_dssp HHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 999998887543 4 444432 1234445555543 35567776666555555555432 2 23
Q ss_pred HHhcCcHHHHHHHHHccCchhHHHH
Q 048757 480 VARAGGVHALVMLARSFMFEGVQEQ 504 (864)
Q Consensus 480 i~~~~~i~~Lv~ll~~~~~~~v~~~ 504 (864)
+.. -|+..++..++...++++..+
T Consensus 195 f~~-~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 195 LMR-LGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp HHH-TTHHHHHHHHHHCCCHHHHHH
T ss_pred HHH-CChHHHHHHHhccCCHHHHHH
Confidence 333 445555566665555655444
No 267
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=90.48 E-value=6.6 Score=47.90 Aligned_cols=177 Identities=11% Similarity=-0.025 Sum_probs=105.9
Q ss_pred HHHHHHHHHcc---CchhHHHHHHHHHHHHhhcCCC-CcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh
Q 048757 486 VHALVMLARSF---MFEGVQEQAARALANLVAHGDS-NSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLSFDD 561 (864)
Q Consensus 486 i~~Lv~ll~~~---~~~~v~~~a~~aL~~L~~~~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~ 561 (864)
+..+..++.++ ..+.++..+.-++..|....-. ++......+ ......|.+.+...+.+-+..++++|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAGQP- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG-
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccCCh-
Confidence 44555566442 3466777777777777542100 111111111 12334444555677888888999999998432
Q ss_pred hhHHHHHHCCChHHHHHHHHhc----CCCCHHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHH--ccCCHHHHHHH
Q 048757 562 RNREAIAAAGGVEALVALVRSC----SSSSQGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALA--RSAVVDVHETA 635 (864)
Q Consensus 562 ~~~~~i~~~~~i~~Lv~lL~~~----~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL--~~~~~~v~~~a 635 (864)
..++.|..++... .+....++..|+.+|..++...+. .+-+.++.+. +..++++|..|
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i~~n~~e~~EvRiaA 534 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPIFLNVAIKSELRIRS 534 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHHHHCTTSCHHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHHhcCCCCChHHHHHH
Confidence 2456666666421 123568899999999987754211 1334577777 45678999988
Q ss_pred HHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCCCcHHHHHHHHHHHHHhhcCCc
Q 048757 636 AGALWNLAFNPGNALCIVEGGGVQALIHLCSSSLSKMARFMAALALAYIVDGRM 689 (864)
Q Consensus 636 ~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~~~~~~r~~aa~aL~~l~~~~~ 689 (864)
...|..-. |. ...+..+...+..+.+..++......|.+++....
T Consensus 535 ~~~Lm~t~--P~-------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~ 579 (1056)
T 1lsh_A 535 CIVFFESK--PS-------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHTC--CC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHC--cC-------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCC
Confidence 88886543 22 13455677777665567777766677777766543
No 268
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=89.55 E-value=13 Score=36.78 Aligned_cols=173 Identities=10% Similarity=-0.015 Sum_probs=106.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcHHHHHHHH----ccCCHHHHHHHHHHHHHhcC-----CC
Q 048757 361 RLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGIDILADLA----RSTNRLVAEEVVGGLWNLSV-----GE 430 (864)
Q Consensus 361 ~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~lL----~~~~~~v~~~a~~aL~~Ls~-----~~ 430 (864)
+.+...|-+.|..-+..++..|..... +++. +. ..++.+++-+ .+.++.+...++.+|..+.. +.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~---~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRS---LL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHH---HH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHH---HH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 344555556677777777777777433 2221 11 1233344422 36788888888888877632 11
Q ss_pred CcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHH
Q 048757 431 DHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALA 510 (864)
Q Consensus 431 ~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~ 510 (864)
.....-. .-.+|.|++-+. +..+.+|..+-.++..+....+ -....+.++..+++ .+...+..++..+.
T Consensus 124 ~~~~~ea-~~~lP~LveKlG---d~k~~vR~~~r~il~~l~~v~~------~~~v~~~l~~g~ks-KN~R~R~e~l~~l~ 192 (266)
T 2of3_A 124 PMSQEEV-SAFVPYLLLKTG---EAKDNMRTSVRDIVNVLSDVVG------PLKMTPMLLDALKS-KNARQRSECLLVIE 192 (266)
T ss_dssp CCCHHHH-HHHHHHHHHGGG---CSSHHHHHHHHHHHHHHHHHHC------HHHHHHHHHHGGGC-SCHHHHHHHHHHHH
T ss_pred cchHHHH-HHHHHHHHHHhC---CChHHHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHcc-CCHHHHHHHHHHHH
Confidence 1111111 124677766664 5778899888887766642111 11235566676766 46888888888888
Q ss_pred HHhhcCCCCcccchhhhccChH---HHHHHHhcCCCHHHHHHHHHHHHHh
Q 048757 511 NLVAHGDSNSNNAAVGLETGAL---EALVQLTFSKHEGVRQEAAGALWNL 557 (864)
Q Consensus 511 ~L~~~~~~~~~~~~~~~~~~~i---~~L~~lL~~~~~~v~~~a~~~L~~L 557 (864)
.+-...... ...++ +.+..++.++|..||.+|..++..+
T Consensus 193 ~li~~~G~~--------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 193 YYITNAGIS--------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHHHHCSG--------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC--------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 886532111 13467 9999999999999999999998765
No 269
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.01 E-value=4.3 Score=49.55 Aligned_cols=171 Identities=15% Similarity=0.054 Sum_probs=103.8
Q ss_pred cHHHHHHHHccc-CCCCHHHHHHHHHHHHHhcC----CCc-chHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhh
Q 048757 441 GIKALVDLIFKW-SSWNDGVLERAAGALANLAA----DDK-CSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVA 514 (864)
Q Consensus 441 ~i~~L~~lL~~~-~~~~~~v~~~a~~~L~~L~~----~~~-~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~ 514 (864)
.+..+..++... ...++.++..+.-+++.|.. ... +...++ ......+.+.+... +.+-+..++.+|+|+..
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~-~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRA-KEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcC-ChHHHHHHHHHhhccCC
Confidence 344455555421 01345566666666666543 222 221111 11223344445554 46667889999999986
Q ss_pred cCCCCcccchhhhccChHHHHHHHhcC-------CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCC
Q 048757 515 HGDSNSNNAAVGLETGALEALVQLTFS-------KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSS 587 (864)
Q Consensus 515 ~~~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~ 587 (864)
. ..++.|..++.. ....++..|+.+|..++...+. .+-+.+.++..+ ...+
T Consensus 470 p--------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~-------~v~~il~~i~~n-~~e~ 527 (1056)
T 1lsh_A 470 P--------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPR-------KVQEIVLPIFLN-VAIK 527 (1056)
T ss_dssp G--------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHH-------HHHHHHHHHHHC-TTSC
T ss_pred h--------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchH-------HHHHHHHHHhcC-CCCC
Confidence 2 457778887742 2456889999999999754211 123556677754 3478
Q ss_pred HHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHcc-CCHHHHHHHHHHHHHhcC
Q 048757 588 QGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARS-AVVDVHETAAGALWNLAF 644 (864)
Q Consensus 588 ~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~~L~~ 644 (864)
+++|..|+..|....-+ ...+..+...+.. ++..|...+...|.+++.
T Consensus 528 ~EvRiaA~~~Lm~t~P~---------~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~ 576 (1056)
T 1lsh_A 528 SELRIRSCIVFFESKPS---------VALVSMVAVRLRREPNLQVASFVYSQMRSLSR 576 (1056)
T ss_dssp HHHHHHHHHHHHHTCCC---------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHCcC---------HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHh
Confidence 99999999998632111 1234556666654 678888899999999986
No 270
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=88.88 E-value=9.6 Score=40.26 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=96.5
Q ss_pred hHHHHHHhCCHHHHHHHhc-----------CCCHHHHHHHHHHHHHHhCCchhHHHHHhc-CcHHHHHHHHccCCHHHHH
Q 048757 350 RAEAILRHGGVRLLLDLAR-----------SPPEGLQSEVAKAIANLSVDSKVAKAVSEN-GGIDILADLARSTNRLVAE 417 (864)
Q Consensus 350 ~~~~i~~~~~i~~L~~lL~-----------~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~v~~ 417 (864)
..+.+. .+|+..|+..|. ..+...+..+++||..+..+......+... ..+..|+..+.+.++.++.
T Consensus 102 WV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~ 180 (383)
T 3eg5_B 102 WVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMI 180 (383)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence 445554 678888888874 124577888999999999987766666554 4688999999999999999
Q ss_pred HHHHHHHHhcCCCC--c-HHHHHh----------hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc---chH---
Q 048757 418 EVVGGLWNLSVGED--H-KGAIAR----------AGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK---CSL--- 478 (864)
Q Consensus 418 ~a~~aL~~Ls~~~~--~-~~~i~~----------~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~---~~~--- 478 (864)
.|+..|..+|..++ + ...+.+ ..-...++..++. ..+.+.+..+...+-.+....+ .|.
T Consensus 181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR 258 (383)
T 3eg5_B 181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIR 258 (383)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc--cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999887543 3 444432 2335556666653 3566777666655555555443 222
Q ss_pred -HHHhcCcHHHHHHHHHccCchhHHH
Q 048757 479 -EVARAGGVHALVMLARSFMFEGVQE 503 (864)
Q Consensus 479 -~i~~~~~i~~Lv~ll~~~~~~~v~~ 503 (864)
.+... |+..++.-++...++++..
T Consensus 259 ~ef~~~-Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 259 SELMRL-GLHQVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHT-THHHHHHHHTTSCCHHHHH
T ss_pred HHHHHC-ChHHHHHHHhcCCChhHHH
Confidence 23333 4444555566554555443
No 271
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=88.80 E-value=7.5 Score=39.30 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccC
Q 048757 374 LQSEVAKAIANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWS 453 (864)
Q Consensus 374 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~ 453 (864)
+...+...|.-|-.+...-.-++...|+..+......++.++.+.....|...++.......= -...+|.+++.++.
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~-- 335 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEI-- 335 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhcc--
Confidence 334566677777778888888999999999999999999999999999999987754322111 12367888888885
Q ss_pred CCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHcc
Q 048757 454 SWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARSF 496 (864)
Q Consensus 454 ~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~~ 496 (864)
.+++++.....+.|.|...... .++..+..|+|+.|-..+...
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 5778999999999999988876 566666889999998888654
No 272
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=88.11 E-value=0.095 Score=55.43 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=31.3
Q ss_pred cCcCcCeeeecccCCCcHHHHHHHHhcCCCccEEeccCCCCCCHH---HhcCCCCcCEEEEeCCCCC
Q 048757 106 CCPKLRRLWLSGVREVNGDAINALAKQCRQLVEVGFIDSGGVDEA---ALENLSSVRYLSIAGTRNL 169 (864)
Q Consensus 106 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~c~~i~~~---~~~~~~~L~~L~l~~c~~~ 169 (864)
.+++|+.|+|+++. ++.-. ...+.++++|++|+|+++. ++.. .+..++ |+.|++.++..-
T Consensus 54 ~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 54 GLGELRNLTIVKSG-LRFVA-PDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCCCSEEECCSSC-CCEEC-TTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cccCCCEEECCCCc-cceeC-HHHhcCCcCCCEEeCCCCc-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 45666666666664 43211 1123456777777777643 3321 122333 777777765433
No 273
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=87.65 E-value=0.18 Score=54.39 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=75.9
Q ss_pred CCcccceeeeecCC-CCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCcCcCeeeeccc-CCCcHHHHHHH
Q 048757 52 QARRLREINVEFCR-ELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCPKLRRLWLSGV-REVNGDAINAL 129 (864)
Q Consensus 52 ~~~~L~~L~l~~c~-~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~~L~~L~l~~~-~~l~~~~l~~l 129 (864)
.|.+|+.+.+.... .+.+.. ...|++|+.+.+. +.-..|.+.. ...|++|++++|... ..+.+.+
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~a----F~~c~~L~~i~l~-~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~a---- 329 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTGA----FMNCPALQDIEFS-SRITELPESV----FAGCISLKSIDIPEGITQILDDA---- 329 (394)
T ss_dssp TCSSCCEEECCTTCCEECTTT----TTTCTTCCEEECC-TTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----
T ss_pred ecccccEEecccccceecCcc----cccccccccccCC-CcccccCcee----ecCCCCcCEEEeCCcccEehHhH----
Confidence 78889998886432 122221 2468999999982 2233344322 357999999999653 2344332
Q ss_pred HhcCCCccEEeccC-CCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCcEEecCC
Q 048757 130 AKQCRQLVEVGFID-SGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLVGLDTSR 191 (864)
Q Consensus 130 ~~~~~~L~~L~l~~-c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~~L~l~~ 191 (864)
+.+|.+|+++.|.. ...+.+.++.+|++|+.+++.+.. ..... ...|.+|+.+.+..
T Consensus 330 F~~C~~L~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~~----~~~~~-~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 330 FAGCEQLERIAIPSSVTKIPESAFSNCTALNNIEYSGSR----SQWNA-ISTDSGLQNLPVAP 387 (394)
T ss_dssp TTTCTTCCEEEECTTCCBCCGGGGTTCTTCCEEEESSCH----HHHHT-CBCCCCC-------
T ss_pred hhCCCCCCEEEECcccCEEhHhHhhCCCCCCEEEECCce----eehhh-hhccCCCCEEEeCC
Confidence 46799999999954 456778888899999999997732 22222 24688888888765
No 274
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=87.46 E-value=5.5 Score=38.40 Aligned_cols=133 Identities=15% Similarity=0.144 Sum_probs=88.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHH-HhcCCCHHHHHHHHHHHHHHhC--C
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLD-LARSPPEGLQSEVAKAIANLSV--D 388 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~~~~~a~~~L~~L~~--~ 388 (864)
+....+.+++..++|..|+..|+.+ . .. ...++.+.. +-.+++-.|++.++.+++.++. +
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~-~~---------------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~ 136 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-S-KD---------------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIE 136 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-T-TS---------------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-c-Cc---------------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 3344455777899999999999886 2 11 224555555 4456778999999999999763 4
Q ss_pred chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHccc-CCCCHHHHHHHHHHH
Q 048757 389 SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKW-SSWNDGVLERAAGAL 467 (864)
Q Consensus 389 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~~~v~~~a~~~L 467 (864)
++ ..++.+....+++++.+++.|...+.--+..+.. ......++.++... .+++.-|+...+..|
T Consensus 137 pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~------k~dp~~ll~iL~~L~~D~s~yVrKSVan~L 202 (240)
T 3l9t_A 137 YK--------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF------KENPNEAIRRIADLKEDVSEYVRKSVGNAL 202 (240)
T ss_dssp TT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT------TTCHHHHHHHHHTTTTCSCHHHHHHHHHHH
T ss_pred HH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh------hcCHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 43 2567788889999999999998886542221111 11122233333221 257778999999999
Q ss_pred HHhcCCCc
Q 048757 468 ANLAADDK 475 (864)
Q Consensus 468 ~~L~~~~~ 475 (864)
..++..++
T Consensus 203 rD~SK~~P 210 (240)
T 3l9t_A 203 RDISKKFP 210 (240)
T ss_dssp HHHHTTCH
T ss_pred HHHhhhCH
Confidence 99988765
No 275
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=87.34 E-value=27 Score=35.51 Aligned_cols=214 Identities=11% Similarity=0.020 Sum_probs=148.8
Q ss_pred HHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHH-hCCHHHHHHHhcCCCHHHHHHHHHHH
Q 048757 304 DFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILR-HGGVRLLLDLARSPPEGLQSEVAKAI 382 (864)
Q Consensus 304 ~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~~~~~a~~~L 382 (864)
.++..+-+..|+..|..-+-+.|..++.+..++.....+.. +...+-+.. ...+..|+..- +++++-..+-..|
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~---~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mL 147 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTR---TPTVEYICTQQNILFMLLKGY--ESPEIALNCGIML 147 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTB---CHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCC---CchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHH
Confidence 33444447788888888899999999999999876543321 222233332 22223333322 4566777788899
Q ss_pred HHHhCCchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHh-cCCCCcHHHHHhhC---cHHHHHHHHcccCCCCHH
Q 048757 383 ANLSVDSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNL-SVGEDHKGAIARAG---GIKALVDLIFKWSSWNDG 458 (864)
Q Consensus 383 ~~L~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L-s~~~~~~~~i~~~g---~i~~L~~lL~~~~~~~~~ 458 (864)
+.+...+.....+...+.+..+.+....++=++...|..++..+ ..++.....+.... .....-.+|. +++-.
T Consensus 148 Recir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~---S~NYV 224 (341)
T 1upk_A 148 RECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH---SENYV 224 (341)
T ss_dssp HHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT---CSSHH
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc---CCcch
Confidence 99999999988888888888899999999999999999998876 33443333333222 3445556665 68889
Q ss_pred HHHHHHHHHHHhcCCCcchHHH----HhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcccchhh
Q 048757 459 VLERAAGALANLAADDKCSLEV----ARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSNNAAVG 526 (864)
Q Consensus 459 v~~~a~~~L~~L~~~~~~~~~i----~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~ 526 (864)
.+..+...|+.+-.+..+...+ .+..-+..++.+|++ ++..+|..|--...-....|..++....++
T Consensus 225 TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d-~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL 295 (341)
T 1upk_A 225 TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRD-KSRNIQFEAFHVFKVFVANPNKTQPILDIL 295 (341)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHCSSCCHHHHHHH
T ss_pred hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcC-chhchhhhhhhheeeeeeCCCCChHHHHHH
Confidence 9999999999999887654333 345568889999998 469999999988888887655444433333
No 276
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=87.15 E-value=6 Score=38.61 Aligned_cols=145 Identities=15% Similarity=0.114 Sum_probs=89.9
Q ss_pred cCcHHHHHHHHHcc----------CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHH
Q 048757 483 AGGVHALVMLARSF----------MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAG 552 (864)
Q Consensus 483 ~~~i~~Lv~ll~~~----------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 552 (864)
.+|+..|+..+... .+...+..++.||..+... .......+....++..+...|.++++.++..++.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~---~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~le 118 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN---KFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAK 118 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSS---HHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCC---hHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHH
Confidence 46677776666431 1345677889999988862 2233445566778999999999999999999999
Q ss_pred HHHHhcCChh--h-HHHHH----------HCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCc---hh----hHHhh
Q 048757 553 ALWNLSFDDR--N-REAIA----------AAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLSE---AN----SIAIG 612 (864)
Q Consensus 553 ~L~~Ls~~~~--~-~~~i~----------~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~~---~~----~~~i~ 612 (864)
.|..++..++ + ...+. +..-...+++.++. +.+.+.+..++..+..+..++ +. |..+.
T Consensus 119 LL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~ 196 (233)
T 2f31_A 119 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELM 196 (233)
T ss_dssp HHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 9988776543 3 33322 22345667776664 356777777666666665542 22 33444
Q ss_pred hcCCHHHHHHHHc-cCCHHHHH
Q 048757 613 REGGVAPLIALAR-SAVVDVHE 633 (864)
Q Consensus 613 ~~~~i~~Lv~lL~-~~~~~v~~ 633 (864)
.. |+..++.-++ .+++++..
T Consensus 197 ~~-Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 197 RL-GLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HT-THHHHHHHHHHCCCHHHHH
T ss_pred HC-ChHHHHHHHhccCCHHHHH
Confidence 44 4444445444 34555443
No 277
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=86.11 E-value=25 Score=37.12 Aligned_cols=154 Identities=14% Similarity=0.186 Sum_probs=96.7
Q ss_pred hhCCchh-HHHHHhhcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHH
Q 048757 296 KKNPKEF-DDFWLRQGATLLLSLMES-----------SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLL 363 (864)
Q Consensus 296 ~~~~~~~-~~~~~~~gv~~L~~lL~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L 363 (864)
..++..+ ..| ..+|+..|+..|.. .+...+..+..||..+.... .+....+....++..+
T Consensus 96 rt~~~sWV~~F-~~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~-------~G~~~vl~~~~~i~~l 167 (383)
T 3eg5_B 96 TSHPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-------FGIKTMLETEEGILLL 167 (383)
T ss_dssp HHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSH-------HHHHHHHTCSSHHHHH
T ss_pred hhCccHHHHHH-HHccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcch-------hhHHHHHcChHHHHHH
Confidence 4444444 444 47888889998842 24578888999998876322 2233445566788999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHhCCc--hh-HHH----------HHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhcCC
Q 048757 364 LDLARSPPEGLQSEVAKAIANLSVDS--KV-AKA----------VSENGGIDILADLARS-TNRLVAEEVVGGLWNLSVG 429 (864)
Q Consensus 364 ~~lL~~~~~~~~~~a~~~L~~L~~~~--~~-~~~----------i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls~~ 429 (864)
...|.+..+.++..++..|.-++..+ ++ ... ..+..-...++..++. .+.+.+..++..+-.+...
T Consensus 168 ~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~ 247 (383)
T 3eg5_B 168 VRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP 247 (383)
T ss_dssp HHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999988743 22 222 2233346677887775 4666666666555555443
Q ss_pred CC---c----HHHHHhhCcHHHHHHHHcccCCCCHHHH
Q 048757 430 ED---H----KGAIARAGGIKALVDLIFKWSSWNDGVL 460 (864)
Q Consensus 430 ~~---~----~~~i~~~g~i~~L~~lL~~~~~~~~~v~ 460 (864)
++ . |..+...| +..+++-++. ..++++.
T Consensus 248 ~~dl~~R~~lR~ef~~~G-l~~il~~lr~--~~~~~L~ 282 (383)
T 3eg5_B 248 AEELDFRVHIRSELMRLG-LHQVLQELRE--IENEDMK 282 (383)
T ss_dssp CCCHHHHHHHHHHHHHTT-HHHHHHHHTT--SCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCC-hHHHHHHHhc--CCChhHH
Confidence 32 2 33334454 5555555764 3455544
No 278
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=83.20 E-value=28 Score=36.76 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=90.0
Q ss_pred hCCHHHHHHHhcC-----------CCHHHHHHHHHHHHHHhCCchhHHHHHh-cCcHHHHHHHHccCCHHHHHHHHHHHH
Q 048757 357 HGGVRLLLDLARS-----------PPEGLQSEVAKAIANLSVDSKVAKAVSE-NGGIDILADLARSTNRLVAEEVVGGLW 424 (864)
Q Consensus 357 ~~~i~~L~~lL~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~a~~aL~ 424 (864)
.+|+..|+..|.. .+...+..++.||..+..+......+.. ..++..++..+.+.++.++..++..|.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~ 125 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 125 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 5666666666531 1356778899999999998766665554 456888999999899999999999999
Q ss_pred HhcCCCC--c-HHHHHh----------hCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcc---h----HHHHhcC
Q 048757 425 NLSVGED--H-KGAIAR----------AGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDKC---S----LEVARAG 484 (864)
Q Consensus 425 ~Ls~~~~--~-~~~i~~----------~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~---~----~~i~~~~ 484 (864)
.+|..++ . ...+.+ ..-...+++.+.. +.+.+.+..+...+-.+....+. | ..+.. -
T Consensus 126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~-~ 202 (386)
T 2bnx_A 126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--GTSIALKVGCLQLINALITPAEELDFRVHIRSELMR-L 202 (386)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST--TSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-T
T ss_pred HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc--CChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-C
Confidence 8887543 3 333322 2234456666653 45666666655555555554432 2 22333 3
Q ss_pred cHHHHHHHHHccCchhHHH
Q 048757 485 GVHALVMLARSFMFEGVQE 503 (864)
Q Consensus 485 ~i~~Lv~ll~~~~~~~v~~ 503 (864)
|+..++.-++...++++..
T Consensus 203 GL~~il~~Lr~~~~~~L~~ 221 (386)
T 2bnx_A 203 GLHQVLQELREIENEDMKV 221 (386)
T ss_dssp THHHHHHHHTTCCCHHHHH
T ss_pred ChHHHHHHHhccCChhHHH
Confidence 4455555566544555443
No 279
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.90 E-value=0.5 Score=50.84 Aligned_cols=144 Identities=11% Similarity=0.201 Sum_probs=86.2
Q ss_pred cCCCCcEEEecCCCC-chHHHHhCCcccceeeeecCCC-CCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcC
Q 048757 30 RCTNLQALWFRGALS-ADAMIILQARRLREINVEFCRE-LTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCC 107 (864)
Q Consensus 30 ~~~~L~~L~l~~~~~-~~~l~~~~~~~L~~L~l~~c~~-l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~ 107 (864)
.+.+|+.+.+..... +..-....|.+|+.+.+..... +... ....|+.|+.+.+ .. ..+.+. ....|
T Consensus 228 ~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~--~~-~~i~~~----~F~~~ 296 (394)
T 4fs7_A 228 SKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIY--GS-VIVPEK----TFYGC 296 (394)
T ss_dssp TTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEE--CS-SEECTT----TTTTC
T ss_pred ccCCCceEEECCCceecccccccccccceeEEcCCCcceeecc----ccccccccceecc--Cc-eeeccc----ccccc
Confidence 467788888876532 2222223788888888865421 1111 1245788888877 32 223322 23568
Q ss_pred cCcCeeeeccc-CCCcHHHHHHHHhcCCCccEEeccC-CCCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCc
Q 048757 108 PKLRRLWLSGV-REVNGDAINALAKQCRQLVEVGFID-SGGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLV 185 (864)
Q Consensus 108 ~~L~~L~l~~~-~~l~~~~l~~l~~~~~~L~~L~l~~-c~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~ 185 (864)
++|+.+.+... ..+.+. ...+|++|+.++|.. ...+.+.++.+|++|+.+++... ++.-+-. ...+|++|+
T Consensus 297 ~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~-aF~~C~~L~ 369 (394)
T 4fs7_A 297 SSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS--LRKIGAN-AFQGCINLK 369 (394)
T ss_dssp TTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT--CCEECTT-TBTTCTTCC
T ss_pred ccccccccccccceechh----hhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc--ccEehHH-HhhCCCCCC
Confidence 88888888543 223322 235688899988854 33455666778899998888542 3211111 235788999
Q ss_pred EEecCC
Q 048757 186 GLDTSR 191 (864)
Q Consensus 186 ~L~l~~ 191 (864)
.++++.
T Consensus 370 ~i~lp~ 375 (394)
T 4fs7_A 370 KVELPK 375 (394)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 998876
No 280
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.71 E-value=0.24 Score=53.41 Aligned_cols=141 Identities=13% Similarity=0.188 Sum_probs=89.8
Q ss_pred hcCCCCcEEEecCCCC-chHHHHhCCcccceeeeecCCCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcC
Q 048757 29 SRCTNLQALWFRGALS-ADAMIILQARRLREINVEFCRELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCC 107 (864)
Q Consensus 29 ~~~~~L~~L~l~~~~~-~~~l~~~~~~~L~~L~l~~c~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~ 107 (864)
..|.+|+.+.+..... +.......|+.++.+...... +.+.. ...|.+|+.+.+. ..-..|.+.+ ...|
T Consensus 250 ~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~-i~~~~----F~~~~~L~~i~l~-~~i~~I~~~a----F~~c 319 (394)
T 4fs7_A 250 YGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI-VPEKT----FYGCSSLTEVKLL-DSVKFIGEEA----FESC 319 (394)
T ss_dssp TTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE-ECTTT----TTTCTTCCEEEEC-TTCCEECTTT----TTTC
T ss_pred cccccceeEEcCCCcceeeccccccccccceeccCcee-ecccc----ccccccccccccc-cccceechhh----hcCC
Confidence 4678899998876532 222222378888888776543 33322 2568999999992 2233343322 3579
Q ss_pred cCcCeeeeccc-CCCcHHHHHHHHhcCCCccEEeccCC-CCCCHHHhcCCCCcCEEEEeCCCCCCHHHHHHHHhcCCCCc
Q 048757 108 PKLRRLWLSGV-REVNGDAINALAKQCRQLVEVGFIDS-GGVDEAALENLSSVRYLSIAGTRNLNWSSAAIAWSKLTSLV 185 (864)
Q Consensus 108 ~~L~~L~l~~~-~~l~~~~l~~l~~~~~~L~~L~l~~c-~~i~~~~~~~~~~L~~L~l~~c~~~~~~~l~~l~~~~~~L~ 185 (864)
++|++++|... ..+.+. ...+|++|+.++|... ..+.+.++.+|++|+.+++... ++. +.....+|++|+
T Consensus 320 ~~L~~i~lp~~v~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~~--~~~--~~~~F~~c~~L~ 391 (394)
T 4fs7_A 320 TSLVSIDLPYLVEEIGKR----SFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPKR--LEQ--YRYDFEDTTKFK 391 (394)
T ss_dssp TTCCEECCCTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEGG--GGG--GGGGBCTTCEEE
T ss_pred CCCCEEEeCCcccEEhHH----hccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECCC--CEE--hhheecCCCCCc
Confidence 99999999642 223332 2457999999999653 4456677779999999999753 221 122345677777
Q ss_pred EE
Q 048757 186 GL 187 (864)
Q Consensus 186 ~L 187 (864)
.+
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 281
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=82.01 E-value=3.6 Score=44.01 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=71.5
Q ss_pred hhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 048757 308 RQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 308 ~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
+.++..++.+.+++|..+|..|...|-.+|.+ ++. ..+...|+++|.++++.-....-.+|..+..
T Consensus 64 ~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i------------~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk 129 (507)
T 3u0r_A 64 DSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL------------PRVADILTQLLQTDDSAEFNLVNNALLSIFK 129 (507)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH------------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh------------hhHHHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence 46688899999999999999999999999976 221 3456778999998888777777777777554
Q ss_pred -CchhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHH
Q 048757 388 -DSKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWN 425 (864)
Q Consensus 388 -~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~ 425 (864)
++ .+.+..+...+..+++.+++.++.-|..
T Consensus 130 ~Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 130 MDA--------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HCH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred cCh--------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 33 2345556666666788888888877753
No 282
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=81.34 E-value=57 Score=40.40 Aligned_cols=284 Identities=11% Similarity=-0.007 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHh--cCCCHHHHHHHHHHHHHHhC------CchhHH
Q 048757 322 QQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLA--RSPPEGLQSEVAKAIANLSV------DSKVAK 393 (864)
Q Consensus 322 ~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL--~~~~~~~~~~a~~~L~~L~~------~~~~~~ 393 (864)
+++.|..|-..|..+-.. ..+...+...| .+.++.+|..|+..|.+... +++.+.
T Consensus 26 ~~~~r~~Ae~~L~~~~~~-----------------p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~ 88 (1204)
T 3a6p_A 26 TQRYRLEALKFCEEFKEK-----------------CPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKV 88 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHH-----------------CTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHH
T ss_pred ChHHHHHHHHHHHHHHhC-----------------chHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 778899999888775311 23444444444 35678899999999998653 233343
Q ss_pred HHHhcCcHHHHHHHHcc-------CCHHHHHHHHHHHHHhcCC--CCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHH
Q 048757 394 AVSENGGIDILADLARS-------TNRLVAEEVVGGLWNLSVG--EDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAA 464 (864)
Q Consensus 394 ~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~ 464 (864)
.+. ..+++.+.. .++.++...+.++..++.. ++. -.+.++.+++++.. ++...+.+.
T Consensus 89 ~Ir-----~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~----~~~~~e~~L 154 (1204)
T 3a6p_A 89 YLK-----NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQ----GETQTELVM 154 (1204)
T ss_dssp HHH-----HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHT----CHHHHHHHH
T ss_pred HHH-----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcC----CHHHHHHHH
Confidence 332 224444321 3577888888888888652 221 13467778888752 456677888
Q ss_pred HHHHHhcCC---Cc----chH-----HHHhc--CcHHHHHHHHHcc------------------CchhHHHHHHHHHHHH
Q 048757 465 GALANLAAD---DK----CSL-----EVARA--GGVHALVMLARSF------------------MFEGVQEQAARALANL 512 (864)
Q Consensus 465 ~~L~~L~~~---~~----~~~-----~i~~~--~~i~~Lv~ll~~~------------------~~~~v~~~a~~aL~~L 512 (864)
.+|..++.+ .+ .+. .+.+. ..++.+...+... ....+...++.++.+.
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 888888653 11 111 11111 1122333333321 1133455566666544
Q ss_pred hhcCCCCcccchhhhcc--ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh---hhHHHHHHC---CChHHHHHHHHhc-
Q 048757 513 VAHGDSNSNNAAVGLET--GALEALVQLTFSKHEGVRQEAAGALWNLSFDD---RNREAIAAA---GGVEALVALVRSC- 583 (864)
Q Consensus 513 ~~~~~~~~~~~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~---~~~~~i~~~---~~i~~Lv~lL~~~- 583 (864)
... .....+.+. ..++.++.++. +++++..|+.+|..+.... +.+..++.. .++..++..+...
T Consensus 235 l~W-----i~~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~ 307 (1204)
T 3a6p_A 235 IDW-----VSMSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAD 307 (1204)
T ss_dssp TTT-----SCHHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCC
T ss_pred Hhc-----cCHHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 332 111222232 26777777665 4678999999999887642 222222221 1123444444210
Q ss_pred ----CCCCHHHHHHHHHHHHHhccCchhhHHhh------h----cCCHHHHHHHHccCCHHHHHHHHHHHHHhcCC
Q 048757 584 ----SSSSQGLQERAAGALWGLSLSEANSIAIG------R----EGGVAPLIALARSAVVDVHETAAGALWNLAFN 645 (864)
Q Consensus 584 ----~~~~~~v~~~A~~aL~~L~~~~~~~~~i~------~----~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~ 645 (864)
...+.++.+.-+..+..+... ....+. . .+.++.++.+.++++..+...+......+..+
T Consensus 308 ~~~~~e~d~e~~k~l~~ll~~lg~~--l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 308 GGGLVEKHYVFLKRLCQVLCALGNQ--LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHH--HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHH--HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 012345556666666655521 111111 0 23467777777888888888888777766654
No 283
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=79.40 E-value=43 Score=40.50 Aligned_cols=216 Identities=11% Similarity=-0.010 Sum_probs=131.1
Q ss_pred cHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhC-
Q 048757 310 GATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSV- 387 (864)
Q Consensus 310 gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~- 387 (864)
.++.++..+-+++++.|..|-..|..+-.. .++...+..+|. +.++.+|..|+..|.+...
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s-----------------p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~ 79 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN-----------------PDAWQKADQILQFSTNPQSKFIALSILDKLITR 79 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC-----------------TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC-----------------ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 355667767677767888888888775422 233444455553 5678999999999998654
Q ss_pred -----CchhHHHHHhcCcHHHHHHHHccC-----CHHHHHHHHHHHHHhcCC--CCcHHHHHhhCcHHHHHHHHcccCCC
Q 048757 388 -----DSKVAKAVSENGGIDILADLARST-----NRLVAEEVVGGLWNLSVG--EDHKGAIARAGGIKALVDLIFKWSSW 455 (864)
Q Consensus 388 -----~~~~~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~a~~aL~~Ls~~--~~~~~~i~~~g~i~~L~~lL~~~~~~ 455 (864)
.++.+.. .....++.+.+...++ .+.++...+.++..++.. ++. -.+.++.++..+. .
T Consensus 80 ~W~~L~~e~~~~-Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-----Wp~~l~dL~~~l~----~ 149 (1023)
T 4hat_C 80 KWKLLPNDHRIG-IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-----WPEFIPELIGSSS----S 149 (1023)
T ss_dssp HGGGSCHHHHHH-HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHTT----T
T ss_pred hhhcCCHHHHHH-HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-----chHHHHHHHHHhc----C
Confidence 2233322 2233344444432221 345666677777777541 211 1346677777774 3
Q ss_pred CHHHHHHHHHHHHHhcCC------Cc---ch-----HHHHh--cCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCC
Q 048757 456 NDGVLERAAGALANLAAD------DK---CS-----LEVAR--AGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSN 519 (864)
Q Consensus 456 ~~~v~~~a~~~L~~L~~~------~~---~~-----~~i~~--~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~ 519 (864)
++...+....+|..|..+ .. .+ ..+.. ...+..+...+....++++...++.++......
T Consensus 150 ~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W---- 225 (1023)
T 4hat_C 150 SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW---- 225 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT----
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh----
Confidence 445566677777776543 11 11 11111 123444555565555677888888888887753
Q ss_pred cccchhhhccChHHHHH-HHhcCCCHHHHHHHHHHHHHhcC
Q 048757 520 SNNAAVGLETGALEALV-QLTFSKHEGVRQEAAGALWNLSF 559 (864)
Q Consensus 520 ~~~~~~~~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~Ls~ 559 (864)
-.-..+.+...++.++ .++. +++++..|+.+|..+..
T Consensus 226 -I~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 226 -IPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp -SCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred -CCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 2334566778999999 8884 57899999999998875
No 284
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=79.32 E-value=39 Score=34.28 Aligned_cols=126 Identities=12% Similarity=0.145 Sum_probs=90.5
Q ss_pred HHHHHhhCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-C
Q 048757 291 LMRISKKNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-S 369 (864)
Q Consensus 291 l~~~~~~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~ 369 (864)
++.++--+....+.|++.+||..+...++.++.++.+.....|...+....-+ ..--.+.+|.+++.+. +
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~---------~t~L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA---------KTPLENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG---------TSCCTTHHHHHHHHHHHC
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh---------hccccccchHHHHHhccC
Confidence 66666667777888999999999999999999999888888887754211100 0112456788888775 6
Q ss_pred CCHHHHHHHHHHHHHHhCC-chhHHHHHhcCcHHHHHHHHcc-------CCHHHHHHHHHHHHH
Q 048757 370 PPEGLQSEVAKAIANLSVD-SKVAKAVSENGGIDILADLARS-------TNRLVAEEVVGGLWN 425 (864)
Q Consensus 370 ~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~lL~~-------~~~~v~~~a~~aL~~ 425 (864)
++.++.....+.|.|.... ..+++.-...|+|+.|-..... .+..-+..|++++.|
T Consensus 337 ~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN 400 (619)
T 3c2g_A 337 PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN 400 (619)
T ss_dssp CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence 8899999999999998775 4677777888999998886532 123344455555544
No 285
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=78.62 E-value=8.3 Score=41.28 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHHhccC-chhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHH
Q 048757 586 SSQGLQERAAGALWGLSLS-EANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHL 664 (864)
Q Consensus 586 ~~~~v~~~A~~aL~~L~~~-~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~l 664 (864)
+++..+.-|+..+.....+ |+... .++..++++..+++..||..|+..|-.+|.+ ++-..++ ..|+++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~kia-----DvL~Ql 108 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRVA-----DILTQL 108 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhHH-----HHHHHH
Confidence 6778888888888776665 44333 2566778888888888888888888888877 5544444 477888
Q ss_pred hcCCCcHHHHHHHHHHHHHhhcCC
Q 048757 665 CSSSLSKMARFMAALALAYIVDGR 688 (864)
Q Consensus 665 l~~~~~~~~r~~aa~aL~~l~~~~ 688 (864)
|+.++ +......-.+|..+...+
T Consensus 109 Lqtdd-~~E~~~V~~sL~sllk~D 131 (507)
T 3u0r_A 109 LQTDD-SAEFNLVNNALLSIFKMD 131 (507)
T ss_dssp TTCCC-HHHHHHHHHHHHHHHHHC
T ss_pred Hhccc-hHHHHHHHHHHHHHHhcC
Confidence 87664 444444444554444433
No 286
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=78.34 E-value=41 Score=35.40 Aligned_cols=156 Identities=14% Similarity=0.167 Sum_probs=94.3
Q ss_pred hhCCchhHHHHHhhcHHHHHHHHcc-----------CCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHH
Q 048757 296 KKNPKEFDDFWLRQGATLLLSLMES-----------SQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLL 364 (864)
Q Consensus 296 ~~~~~~~~~~~~~~gv~~L~~lL~~-----------~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~ 364 (864)
..++..+..-+..+|+..|+..|.. .+.+.+..+..||..+.... .+....+...+++..+.
T Consensus 34 rt~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~-------~Gl~~vl~~~~~i~~l~ 106 (386)
T 2bnx_A 34 NNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-------FGIKTMLETEEGILLLV 106 (386)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH-------HHHHHHHHSSSHHHHHH
T ss_pred hcCCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCH-------HHHHHHHcCcHHHHHHH
Confidence 3444333333346888888888742 14677888999998876322 22334455667889999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhCCch--h-HHHH----------HhcCcHHHHHHHHc-cCCHHHHHHHHHHHHHhcCCC
Q 048757 365 DLARSPPEGLQSEVAKAIANLSVDSK--V-AKAV----------SENGGIDILADLAR-STNRLVAEEVVGGLWNLSVGE 430 (864)
Q Consensus 365 ~lL~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i----------~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~Ls~~~ 430 (864)
..|.++++.++..++..|..+|..+. . ...+ .+..-...++..++ +.+.+.+..++..+-.+...+
T Consensus 107 ~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~ 186 (386)
T 2bnx_A 107 RAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 186 (386)
T ss_dssp HTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999888432 3 2221 22233556777775 445566655555555554433
Q ss_pred C-------cHHHHHhhCcHHHHHHHHcccCCCCHHHHH
Q 048757 431 D-------HKGAIARAGGIKALVDLIFKWSSWNDGVLE 461 (864)
Q Consensus 431 ~-------~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~ 461 (864)
+ .|..+... |+..+++-++. ..++.+..
T Consensus 187 ~dl~~R~~LR~Ef~~~-GL~~il~~Lr~--~~~~~L~~ 221 (386)
T 2bnx_A 187 EELDFRVHIRSELMRL-GLHQVLQELRE--IENEDMKV 221 (386)
T ss_dssp SCHHHHHHHHHHHHHT-THHHHHHHHTT--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC-ChHHHHHHHhc--cCChhHHH
Confidence 2 23333444 45555666664 34555443
No 287
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=77.46 E-value=1.3e+02 Score=36.14 Aligned_cols=189 Identities=10% Similarity=0.079 Sum_probs=108.6
Q ss_pred HHHHHHHccC---CHHHHHHHHHHHHHhcccCCcccccchH----hHHHHHHhCCHHHHHHHhc--CCCHHHHHHHHHHH
Q 048757 312 TLLLSLMESS---QQEVQERAAYAVATFVVIDDQNAMVDCQ----RAEAILRHGGVRLLLDLAR--SPPEGLQSEVAKAI 382 (864)
Q Consensus 312 ~~L~~lL~~~---~~~v~~~a~~~L~~L~~~~~~~~~~~~~----~~~~i~~~~~i~~L~~lL~--~~~~~~~~~a~~~L 382 (864)
.....+|.+. ++.+|..|+..|.+... ..++. .+. -.....+..+.+ .. ....-++...+.++
T Consensus 43 ~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~------~l~~e~~~~~~~-~lr~~ll~~l~~-~~~~~~~~~IrnKL~~~l 114 (980)
T 3ibv_A 43 KICHEIFSEKTKYKPSTRLICLQTLSEKVR------EWNNESNLLELQ-MIRDSVWSYIKE-LSFLDEPAYISNAVQHLL 114 (980)
T ss_dssp HHHHHHTTCTTTSCHHHHHHHHHHHHHHHH------HCCTTTSHHHHH-HHHHHHHHHHHH-CCSTTSCTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHHHH------hCChhhhHHHHH-HHHHHHHHHHHH-hcCCCCcHHHHHHHHHHH
Confidence 4566777553 78999999999988664 11111 111 222223333333 11 24566888888888
Q ss_pred HHHhCC--chhHHHHHhcCcHHHHHHHHccCCH-HHHHHHHHHHHHhcC---C-C--C-----c-----HHHHHhh---C
Q 048757 383 ANLSVD--SKVAKAVSENGGIDILADLARSTNR-LVAEEVVGGLWNLSV---G-E--D-----H-----KGAIARA---G 440 (864)
Q Consensus 383 ~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~-~v~~~a~~aL~~Ls~---~-~--~-----~-----~~~i~~~---g 440 (864)
..++.. |+.. ...++.++.+++.+++ ......+++|..++. + . . . ++.+.+. .
T Consensus 115 a~l~~~~~p~~W-----p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~ 189 (980)
T 3ibv_A 115 TLLFLQLYPSNW-----NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD 189 (980)
T ss_dssp HHHHHHHTTTTC-----TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhCcccC-----chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence 887652 2211 2346677777765443 344555666664432 1 1 0 0 2223221 0
Q ss_pred cHHHHHHHHcccC-CCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCC
Q 048757 441 GIKALVDLIFKWS-SWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGD 517 (864)
Q Consensus 441 ~i~~L~~lL~~~~-~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~ 517 (864)
.++....++..+. +.++.++..+..++.....-- ....+...+.++.+..++.+ ++++..|+.+|..+...+.
T Consensus 190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKM 263 (980)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCC
Confidence 1333444443321 256778888888888776532 23455566677888877754 7899999999999998654
No 288
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=77.37 E-value=0.22 Score=53.28 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=83.6
Q ss_pred CCCCcEEEecCCCCc-hHHHHhCCcccceeeeecCC-CCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhcCc
Q 048757 31 CTNLQALWFRGALSA-DAMIILQARRLREINVEFCR-ELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYCCP 108 (864)
Q Consensus 31 ~~~L~~L~l~~~~~~-~~l~~~~~~~L~~L~l~~c~-~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~~~ 108 (864)
|..+..+.+...... .......+.+|+.+.+...- .+.+.. ...|.+|+.+.+. ..-..|.+. ....|.
T Consensus 193 ~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp-~~v~~I~~~----aF~~~~ 263 (379)
T 4h09_A 193 AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIP-KNVTSIGSF----LLQNCT 263 (379)
T ss_dssp TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEEC-TTCCEECTT----TTTTCT
T ss_pred cccccccccccceeEEeecccccccccceeeeccceeEEcccc----ccCCccceEEEcC-CCccEeCcc----ccceee
Confidence 444555554443221 11222267788888775431 111211 2458889998882 222223222 234688
Q ss_pred CcCeeeecccC-CCcHHHHHHHHhcCCCccEEeccCC--CCCCHHHhcCCCCcCEEEEeC-CCCCCHHHHHHHHhcCCCC
Q 048757 109 KLRRLWLSGVR-EVNGDAINALAKQCRQLVEVGFIDS--GGVDEAALENLSSVRYLSIAG-TRNLNWSSAAIAWSKLTSL 184 (864)
Q Consensus 109 ~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~c--~~i~~~~~~~~~~L~~L~l~~-c~~~~~~~l~~l~~~~~~L 184 (864)
+|+.+.+...- .+.. ....+|++|+.+.+.++ ..+.+..+.+|.+|+.+.|.. ...+.+. ...+|++|
T Consensus 264 ~l~~i~l~~~i~~i~~----~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~C~~L 335 (379)
T 4h09_A 264 ALKTLNFYAKVKTVPY----LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVY----AFKNCKAL 335 (379)
T ss_dssp TCCEEEECCCCSEECT----TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTT----TTTTCTTC
T ss_pred hhccccccccceeccc----cccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHH----HhhCCCCC
Confidence 89998886532 1222 23457899999999764 346677777999999999853 2333322 23578999
Q ss_pred cEEecCC
Q 048757 185 VGLDTSR 191 (864)
Q Consensus 185 ~~L~l~~ 191 (864)
+.+.+..
T Consensus 336 ~~i~ip~ 342 (379)
T 4h09_A 336 STISYPK 342 (379)
T ss_dssp CCCCCCT
T ss_pred CEEEECC
Confidence 9998875
No 289
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=75.60 E-value=73 Score=38.62 Aligned_cols=215 Identities=7% Similarity=-0.011 Sum_probs=130.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhc-CCCHHHHHHHHHHHHHHhCC-
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLAR-SPPEGLQSEVAKAIANLSVD- 388 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~~~~a~~~L~~L~~~- 388 (864)
++.++..+-+++++.|..|-..|..+-.. .++...+..+|. +.++.+|..|+..|.+....
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~s-----------------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~ 92 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEH-----------------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTR 92 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCC-----------------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcC-----------------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 56677777778888899999999886422 223344444554 45889999999999986542
Q ss_pred -----chhHHHHHhcCcHHHHHHHHcc-----CCHHHHHHHHHHHHHhcC--CCCcHHHHHhhCcHHHHHHHHcccCCCC
Q 048757 389 -----SKVAKAVSENGGIDILADLARS-----TNRLVAEEVVGGLWNLSV--GEDHKGAIARAGGIKALVDLIFKWSSWN 456 (864)
Q Consensus 389 -----~~~~~~i~~~g~i~~Lv~lL~~-----~~~~v~~~a~~aL~~Ls~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~ 456 (864)
++.+..+ ....++.+.+.-.+ .++.++...+.++..+.. -++. -.+.++-++..+.. +
T Consensus 93 W~~L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~-----Wp~fi~dLv~~~~~----~ 162 (1073)
T 3gjx_A 93 WKILPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH-----WPTFISDIVGASRT----S 162 (1073)
T ss_dssp GGGSCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHH----C
T ss_pred hhhCCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh-----ccHHHHHHHHHhCC----C
Confidence 2333322 22234444443222 246677777777777754 1221 12356666666642 4
Q ss_pred HHHHHHHHHHHHHhcCC-Cc--------c-----hHHHHhc--CcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc
Q 048757 457 DGVLERAAGALANLAAD-DK--------C-----SLEVARA--GGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNS 520 (864)
Q Consensus 457 ~~v~~~a~~~L~~L~~~-~~--------~-----~~~i~~~--~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~ 520 (864)
+...+....+|..+... .. . ++.+... ..++.+...+....++++...++.+|....+.
T Consensus 163 ~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW----- 237 (1073)
T 3gjx_A 163 ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW----- 237 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh-----
Confidence 45566677777777654 11 1 1122221 12333444555555677778888999888764
Q ss_pred ccchhhhccChHHHH-HHHhcCCCHHHHHHHHHHHHHhcC
Q 048757 521 NNAAVGLETGALEAL-VQLTFSKHEGVRQEAAGALWNLSF 559 (864)
Q Consensus 521 ~~~~~~~~~~~i~~L-~~lL~~~~~~v~~~a~~~L~~Ls~ 559 (864)
-.-..+.+.+.++.+ ..+| .+++++..|+.+|..+..
T Consensus 238 I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 238 IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 334566778888888 4666 467899999999998764
No 290
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=70.88 E-value=72 Score=38.65 Aligned_cols=218 Identities=13% Similarity=-0.003 Sum_probs=131.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-----
Q 048757 401 IDILADLARSTNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK----- 475 (864)
Q Consensus 401 i~~Lv~lL~~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~----- 475 (864)
++.++..+-++++..+..|-..|..+-.+++ +...+..+|.. +.++.++..|+.+|.+......
T Consensus 30 Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~--s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 30 LDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEF--SQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC-----CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 4555655556678888889999988876654 34445555653 5678999999999988866422
Q ss_pred chHHHHhcCcHHHHHHHHHcc----CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHH
Q 048757 476 CSLEVARAGGVHALVMLARSF----MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAA 551 (864)
Q Consensus 476 ~~~~i~~~~~i~~Lv~ll~~~----~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 551 (864)
....-.+...+..+.....++ .++.++...+.++..+.... .++. =...++.+++++.. ++......+
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~--~P~~-----Wp~fi~dLv~~~~~-~~~~~~~~L 170 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQE--WPKH-----WPTFISDIVGASRT-SESLCQNNM 170 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHH--TTTT-----CTTHHHHHHHHHHH-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHh--Chhh-----ccHHHHHHHHHhCC-CHHHHHHHH
Confidence 112222223333333332221 23566677788888887641 1110 13577888887753 345566677
Q ss_pred HHHHHhcCC--h---h----h-----HHHHHHCCChHHHHHH----HHhcCCCCHHHHHHHHHHHHHhccCchhhHHhhh
Q 048757 552 GALWNLSFD--D---R----N-----REAIAAAGGVEALVAL----VRSCSSSSQGLQERAAGALWGLSLSEANSIAIGR 613 (864)
Q Consensus 552 ~~L~~Ls~~--~---~----~-----~~~i~~~~~i~~Lv~l----L~~~~~~~~~v~~~A~~aL~~L~~~~~~~~~i~~ 613 (864)
.+|..|+.. + . . ++.+.+. ++.++.+ +.. ..++++...+..+|..+..--+. ..+.+
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~--~~~~~lv~~~L~~L~~~~sWI~i-~~i~~ 245 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMEN--SQNAPLVHATLETLLRFLNWIPL-GYIFE 245 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTTTSCT-HHHHS
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHhcCH-HHhcc
Confidence 777777543 0 0 1 2223332 4444444 443 46788888889999988765222 24566
Q ss_pred cCCHHHHH-HHHccCCHHHHHHHHHHHHHhcC
Q 048757 614 EGGVAPLI-ALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 614 ~~~i~~Lv-~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
.+.++.|+ .+| .+++++..|+.+|..+..
T Consensus 246 ~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 246 TKLISTLIYKFL--NVPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp SSHHHHHHHHTS--SSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhc--CChHHHHHHHHHHHHHHh
Confidence 77777663 555 467889999999998764
No 291
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=70.19 E-value=1.4 Score=46.87 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=79.2
Q ss_pred hcCCCCcEEEecCCCC-chHHHHhCCcccceeeeecC-CCCCHHHHHHHHhCCCCcceEEeccCCCCCCCHHHHHHHHhc
Q 048757 29 SRCTNLQALWFRGALS-ADAMIILQARRLREINVEFC-RELTDAIFSAIVARHEMLEILHFGLDVCDRISSDAIKTVAYC 106 (864)
Q Consensus 29 ~~~~~L~~L~l~~~~~-~~~l~~~~~~~L~~L~l~~c-~~l~d~~l~~l~~~~~~L~~L~l~~~~c~~i~~~~l~~l~~~ 106 (864)
..|.+|+.+.+..... +..-....|.+|+.+.+... ..+.+.. ...|.+|+.+.+. ..-..+.+. ....
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~a----F~~~~~l~~i~l~-~~i~~i~~~----aF~~ 284 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFL----LQNCTALKTLNFY-AKVKTVPYL----LCSG 284 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTTT----TTTCTTCCEEEEC-CCCSEECTT----TTTT
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCccc----cceeehhcccccc-ccceecccc----cccc
Confidence 3577788888865422 22222237889999988653 1122221 2468899999982 222222221 2357
Q ss_pred CcCcCeeeecccC--CCcHHHHHHHHhcCCCccEEeccC-CCCCCHHHhcCCCCcCEEEEeC
Q 048757 107 CPKLRRLWLSGVR--EVNGDAINALAKQCRQLVEVGFID-SGGVDEAALENLSSVRYLSIAG 165 (864)
Q Consensus 107 ~~~L~~L~l~~~~--~l~~~~l~~l~~~~~~L~~L~l~~-c~~i~~~~~~~~~~L~~L~l~~ 165 (864)
|++|+++.+.++. .+.+. ...+|++|+.++|.. ...|.+.++.+|++|+.+.+..
T Consensus 285 c~~L~~i~l~~~~i~~I~~~----aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPR----VFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CTTCCEEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccceehhh----hhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEECC
Confidence 9999999997643 24333 246799999999954 4556777788999999998853
No 292
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=67.97 E-value=7.4 Score=34.40 Aligned_cols=73 Identities=4% Similarity=-0.052 Sum_probs=57.8
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~ 387 (864)
..+..+.+-|++.++.++..|...|..+....... ....+.....+..++.+++..++.|+..++..+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~------f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKI------FHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------HHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHH------HHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 44678888899999999999999999887665432 33456667778888888877889999999998887654
No 293
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=66.58 E-value=12 Score=33.34 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=59.1
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC------CCHHHHHHHHHHH
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS------PPEGLQSEVAKAI 382 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L 382 (864)
..+..|.+-+++.++.++..|...|..+....... ....+.....+..|+.++.. .++.|+..++..+
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~------fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKR------FHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHH------HHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHH------HHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 44678888899999999999999999988766532 34567788888999999863 5788999999999
Q ss_pred HHHhC
Q 048757 383 ANLSV 387 (864)
Q Consensus 383 ~~L~~ 387 (864)
...+.
T Consensus 122 ~~W~~ 126 (149)
T 3g2s_A 122 YSWTV 126 (149)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88664
No 294
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=66.44 E-value=11 Score=33.55 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=59.0
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC------CCHHHHHHHHHHH
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS------PPEGLQSEVAKAI 382 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L 382 (864)
.++..|.+-|++.++.++..|...|..+....... ....+.....+..|+.++.. .++.|+..++..+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~------fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEK------FHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH------HHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------HHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 44678888899999999999999999988766432 34667788889999998863 4789999999998
Q ss_pred HHHhC
Q 048757 383 ANLSV 387 (864)
Q Consensus 383 ~~L~~ 387 (864)
...+.
T Consensus 112 ~~W~~ 116 (148)
T 1mhq_A 112 FSWTV 116 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 295
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.03 E-value=11 Score=34.24 Aligned_cols=73 Identities=5% Similarity=-0.032 Sum_probs=57.5
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~ 387 (864)
..+..|.+-|++.++.++..|...|..+....... ....+.....+..|+.++.. .++.|+..++..+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~------Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKI------FHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHH------HHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH------HHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 44677888899999999999999999988665432 34567777888888888865 678999999988887554
No 296
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=63.48 E-value=1.9e+02 Score=35.63 Aligned_cols=208 Identities=12% Similarity=-0.033 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc------chHHHHhcC
Q 048757 411 TNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK------CSLEVARAG 484 (864)
Q Consensus 411 ~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~------~~~~i~~~~ 484 (864)
.+...+..|-..|.++-..++ +...+...|.. .+.+..+|..|+.+|.+...... .+..+ +
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~p~---------~~~~~~~~L~~-~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~I-r-- 91 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEKCP---------ICVPCGLRLAE-KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYL-K-- 91 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT---------THHHHHHHHTS-TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHH-H--
T ss_pred CChHHHHHHHHHHHHHHhCch---------HHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHH-H--
Confidence 367788888888887644332 44444444432 35678999999999988764321 22222 2
Q ss_pred cHHHHHHHHHcc------CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 048757 485 GVHALVMLARSF------MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSKHEGVRQEAAGALWNLS 558 (864)
Q Consensus 485 ~i~~Lv~ll~~~------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls 558 (864)
..++..+... ..+.++...+.++..++... .+.. =.+.++.|++++.+ ++..++.+..+|..|+
T Consensus 92 --~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d--~p~~-----Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 92 --NSVMELIANGTLNILEEENHIKDALSRIVVEMIKRE--WPQH-----WPDMLIELDTLSKQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp --HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH--STTT-----CTTHHHHHHHHHHT-CHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHh--Cccc-----chHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 2345554432 34678888888999888751 1111 13678889988876 5566777888888875
Q ss_pred CC-------hhhHH-----HHHHC--CChHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHhccCchhh
Q 048757 559 FD-------DRNRE-----AIAAA--GGVEALVALVRSCS----------------SSSQGLQERAAGALWGLSLSEANS 608 (864)
Q Consensus 559 ~~-------~~~~~-----~i~~~--~~i~~Lv~lL~~~~----------------~~~~~v~~~A~~aL~~L~~~~~~~ 608 (864)
.+ ...|. .+.+. ..++.+..++.+.. ..++.+...++.++.++..--+..
T Consensus 162 Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~ 241 (1204)
T 3a6p_A 162 EDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMS 241 (1204)
T ss_dssp HHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHH
Confidence 42 01111 12221 12233333343200 023456677777777655432211
Q ss_pred HHhhhcC--CHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 609 IAIGREG--GVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 609 ~~i~~~~--~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
.+.+.. .++.+..++. +++++..|+.+|..+..
T Consensus 242 -~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 242 -HITAENCKLLEILCLLLN--EQELQLGAAECLLIAVS 276 (1204)
T ss_dssp -HHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHT
T ss_pred -HHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 222322 5566666554 57789999999999986
No 297
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=59.86 E-value=15 Score=33.57 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=58.2
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC------CCHHHHHHHHHHH
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS------PPEGLQSEVAKAI 382 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L 382 (864)
..+..|.+-+++.++.++..|...|..+....... ....+.+...+..|+.++.. .+..|+..++..+
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 44678888899999999999999999988665422 34567788889999998862 4688999999999
Q ss_pred HHHhC
Q 048757 383 ANLSV 387 (864)
Q Consensus 383 ~~L~~ 387 (864)
...+.
T Consensus 124 ~~W~~ 128 (171)
T 1juq_A 124 YSWTM 128 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 298
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=53.59 E-value=1.7e+02 Score=29.32 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=93.2
Q ss_pred HHHHHHhcCC------CHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhccC-c
Q 048757 533 EALVQLTFSK------HEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSLS-E 605 (864)
Q Consensus 533 ~~L~~lL~~~------~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~~-~ 605 (864)
.....++++. +.+....|+..|..+|.+-+.-..|+++. .+.|-.++-. ...++.+++.|+.+|+..-++ |
T Consensus 25 ~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~-~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 25 KEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLN-ENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHC-TTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhh-ccCChhHHHHHHHHHHHHHccCH
Confidence 3444455544 34456778888999988866655565532 3455454422 236788999999999998877 5
Q ss_pred hhhHHhhh--cCCHHHHHHHHcc-------CCHHHHHHHHHHHHHhcCCcccHHHHHhCCcHHHHHHHhcCC-CcHHHHH
Q 048757 606 ANSIAIGR--EGGVAPLIALARS-------AVVDVHETAAGALWNLAFNPGNALCIVEGGGVQALIHLCSSS-LSKMARF 675 (864)
Q Consensus 606 ~~~~~i~~--~~~i~~Lv~lL~~-------~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~v~~L~~ll~~~-~~~~~r~ 675 (864)
+.-..+.+ ...+..+..-|.. ....+...-+++|..|..++.. + ...++..|.+++... ..+.+|.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHHHH
Confidence 55444443 3445554444432 3446667788899999887631 1 145778888888643 1478888
Q ss_pred HHHHHHHHhh
Q 048757 676 MAALALAYIV 685 (864)
Q Consensus 676 ~aa~aL~~l~ 685 (864)
.++..+..+.
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 8888776555
No 299
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=52.87 E-value=4e+02 Score=32.74 Aligned_cols=301 Identities=14% Similarity=0.129 Sum_probs=144.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhCCchh
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSVDSKV 391 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~ 391 (864)
..+++++.-....+|......|-.+..+.+ + ..+...|..+|.. ++.+....+.+|.+|.-+++.
T Consensus 160 ~ki~~vl~vap~~lQ~diI~sLPeIl~ds~-H-------------~~v~~~L~~lL~~-~~~L~~~iLdaLs~L~Ls~~~ 224 (1323)
T 3s4w_B 160 AQMMQLISVAPVNLQHDFITSLPEILGDSQ-H-------------ANVGKELGELLVQ-NTSLTVPILDVFSSLRLDPNF 224 (1323)
T ss_dssp HHHHHHHHHSCTTTHHHHHHTHHHHSCGGG-H-------------HHHHHHHHHHHHH-CSTTHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHhcchh-h-------------HHHHHHHHHHHhc-CcchHHHHHHHHHcCCCCHHH
Confidence 344455543334555555555555542221 1 1234455666644 445677777888887777643
Q ss_pred HHHH----H------hcCcHHHHHHHH-ccCCHHHHHHHHHHHHH-hcCC----C----CcHHHHHhhC-----------
Q 048757 392 AKAV----S------ENGGIDILADLA-RSTNRLVAEEVVGGLWN-LSVG----E----DHKGAIARAG----------- 440 (864)
Q Consensus 392 ~~~i----~------~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~-Ls~~----~----~~~~~i~~~g----------- 440 (864)
...+ . +...+|.+++++ ++.++.-...+...|+. |-.. | ..+..+...|
T Consensus 225 l~~vr~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s 304 (1323)
T 3s4w_B 225 LSKIRQLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENS 304 (1323)
T ss_dssp HHHHHHHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHCC----------------------------CH
T ss_pred HHHHHHHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCcccccc
Confidence 3333 2 234488899865 33332222223333332 2110 0 0111111111
Q ss_pred ---cHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCC
Q 048757 441 ---GIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGD 517 (864)
Q Consensus 441 ---~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~ 517 (864)
....+++.+++.-.....+-+.-.+.+.++....+. ..++.++-++--..+...+..+-..+.+....+.
T Consensus 305 ~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~h-------k~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~ 377 (1323)
T 3s4w_B 305 DKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAEH-------KSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDC 377 (1323)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTC-------CTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCccccc-------chhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCC
Confidence 112234444321112344555555566555443221 2333333322111234456777777777766432
Q ss_pred CCcccchhh------hccChHHHHH----HHhcCCCHHHHHHHHHHHHHhc--CChhhHHHHHHCCChHHHHHHHHhcCC
Q 048757 518 SNSNNAAVG------LETGALEALV----QLTFSKHEGVRQEAAGALWNLS--FDDRNREAIAAAGGVEALVALVRSCSS 585 (864)
Q Consensus 518 ~~~~~~~~~------~~~~~i~~L~----~lL~~~~~~v~~~a~~~L~~Ls--~~~~~~~~i~~~~~i~~Lv~lL~~~~~ 585 (864)
-....-... +-...++.++ .++++.++.++.-+...-..+- .++.+++.+ +..|+..+.+
T Consensus 378 it~~ll~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeV-----l~~Lv~hi~s--- 449 (1323)
T 3s4w_B 378 IQEQLLDSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEV-----VGALVTHVCS--- 449 (1323)
T ss_dssp SCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHH-----HHHHHHHHHH---
T ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHhhhcC---
Confidence 111110000 0112334444 3467788888877766544432 233334444 4566666665
Q ss_pred CCHHHHHHHHHHHHHhccCchhhHHhhh-cCCHHHHHHHHccCCHHHHHHHHHHHHHhcC
Q 048757 586 SSQGLQERAAGALWGLSLSEANSIAIGR-EGGVAPLIALARSAVVDVHETAAGALWNLAF 644 (864)
Q Consensus 586 ~~~~v~~~A~~aL~~L~~~~~~~~~i~~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 644 (864)
++..-...|+.+|..|+..... .+.. .-.+..+++.+.+-+..-.+.....|+.++.
T Consensus 450 g~~~eVd~ALdvL~~L~~~~~~--~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 450 GTEAEVDTALDVLLELIVLNAS--AMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhcCHH--HHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Confidence 5555566699999988854211 1211 1234455666666666666667888888886
No 300
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=51.36 E-value=28 Score=30.63 Aligned_cols=69 Identities=6% Similarity=0.027 Sum_probs=52.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVD--SKVAKAVSENGGIDILADLARSTNRLVAEEVVGGLWNLS 427 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~Ls 427 (864)
++..+...|.+.++.++..|+..|-.+..+ +.....+....-+..|+++++..++.|++.++..+..-+
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 345556667888999999999988888774 455666666666777888887788899999888876654
No 301
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=49.75 E-value=1.3e+02 Score=31.33 Aligned_cols=63 Identities=11% Similarity=-0.005 Sum_probs=49.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 048757 311 ATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANL 385 (864)
Q Consensus 311 v~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L 385 (864)
++.++++-.+.+.++|.+.+..+...+..+.+. -...++.|..+|.+.++.+...+..+..++
T Consensus 65 l~~il~f~~d~~~~vRk~~a~FieEa~~~~~el------------~~~~l~~L~~LL~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 65 LDEIIAFQADKSIEVRKFVIGFIEEACKRDIEL------------LLKLIANLNMLLRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG------------HHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 588888888889999999999999977544322 144677888888889999998888877775
No 302
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.41 E-value=37 Score=32.67 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=56.6
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh--hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL 603 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~ 603 (864)
.++..|.+-+.+.++.++..|+.+|-.+..+- .....|.....++.|+.++.. ..++.|+..++..+..++.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR--QVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHH
Confidence 45677778888999999999999998887763 345566666678888888876 5678999999999887653
No 303
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.36 E-value=19 Score=34.74 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=56.4
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~ 387 (864)
+.+..|.+-|++.++.++..|...|..+..+.... ....|.....+..|..+++. .++.|+..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~------f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQT------VHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHH------HHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchH------HHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 44678888999999999999999999987655422 34556677777778777754 678899999998888654
No 304
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=47.97 E-value=2.3e+02 Score=28.41 Aligned_cols=136 Identities=7% Similarity=0.001 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCc-chHHHHh--cCcHHH
Q 048757 412 NRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADDK-CSLEVAR--AGGVHA 488 (864)
Q Consensus 412 ~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~--~~~i~~ 488 (864)
+....+.|+..|..++.+-+....|.... ...|-.++.. ...++.+++.|+++++...++++ ....+.+ ...+..
T Consensus 41 D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~-~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~ 118 (315)
T 3qml_C 41 DIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLN-ENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSK 118 (315)
T ss_dssp HHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHC-TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhh-ccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHH
Confidence 34456778888888888777777777642 4455555432 24667899999999999999876 4343332 344555
Q ss_pred HHHHHHcc------CchhHHHHHHHHHHHHhhcCCCCcccchhhhccChHHHHHHHhcCC--CHHHHHHHHHHHHHh
Q 048757 489 LVMLARSF------MFEGVQEQAARALANLVAHGDSNSNNAAVGLETGALEALVQLTFSK--HEGVRQEAAGALWNL 557 (864)
Q Consensus 489 Lv~ll~~~------~~~~v~~~a~~aL~~L~~~~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~L 557 (864)
+..-|... ....++..-+.+|..|...+ .. + ...++..|.+++... ++.++..++..+..+
T Consensus 119 lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 119 IMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---ED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp HHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 55544331 23466777888888888742 11 1 134557777776666 888898888888766
No 305
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=46.90 E-value=39 Score=30.58 Aligned_cols=69 Identities=6% Similarity=0.028 Sum_probs=52.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHHcc-CCHHHHHHHHHHHHHhc
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVD--SKVAKAVSENGGIDILADLARS-TNRLVAEEVVGGLWNLS 427 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~-~~~~v~~~a~~aL~~Ls 427 (864)
++..|...|++.++.++..|+..|-.+..+ +.....+....-+..|++++.. .++.|++.++..+..-+
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 445566677889999999999999988874 4566677777778888888764 57888888888766543
No 306
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=45.37 E-value=58 Score=31.98 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=52.1
Q ss_pred hCCchhHHHHHhhcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHH
Q 048757 297 KNPKEFDDFWLRQGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQS 376 (864)
Q Consensus 297 ~~~~~~~~~~~~~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~ 376 (864)
.++.-++.|+ +.++.+-.+++.++|...+..+...+..+.+. -...++.|..+|+++++.+.+
T Consensus 46 ~dp~ll~~~l-----~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l------------~~~~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 46 SCAELAEEFL-----ESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL------------LPHVINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp TTGGGHHHHH-----HHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG------------HHHHHHHHHHHTTCSCHHHHH
T ss_pred cCHhHHHHHH-----HHHHHhccCChHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHcCCCHHHHH
Confidence 4444445544 67777766788999999999999877544322 244677888888888898888
Q ss_pred HHHHHHHHH
Q 048757 377 EVAKAIANL 385 (864)
Q Consensus 377 ~a~~~L~~L 385 (864)
.+..+..++
T Consensus 109 ~~I~~~~~i 117 (257)
T 3gs3_A 109 RVIQACGSI 117 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777763
No 307
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=44.82 E-value=49 Score=29.39 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=54.4
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVD--SKVAKAVSENGGIDILADLARS------TNRLVAEEVVGGLWNLS 427 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls 427 (864)
++..|..-+.+.++.++..|+..|-.+..+ +.....+.....+..|++++.. .++.|++.++..+..-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 455666778899999999999999998874 4566777777778889998853 57889999888877654
No 308
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=43.00 E-value=1.4e+02 Score=27.75 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=74.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC------CCHHHHHHHHHHHHHH
Q 048757 312 TLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS------PPEGLQSEVAKAIANL 385 (864)
Q Consensus 312 ~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~------~~~~~~~~a~~~L~~L 385 (864)
..+.+.+.+ ..|..|...|.+ |..- ...+|.+++.+.+ .|...-....+....|
T Consensus 14 ~~It~a~~~---~~r~~aL~sL~~----D~gL-------------~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~AL 73 (196)
T 4atg_A 14 DKILSMIKS---DMKDIAIECLEK----ESGL-------------QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSL 73 (196)
T ss_dssp HHHHHHHTS---TTHHHHHHHHHH----CSSC-------------TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh---HHHHHHHHHHhc----CCCh-------------hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 445555544 446666666655 2221 3345555554432 3555555566666677
Q ss_pred hCCchhHHHHHhcCcHHHHHHHH-cc--CCHHHHHHHHHHHHHhcC-----CCCcHHHHHhhCcHHHHHHHHcccCCCCH
Q 048757 386 SVDSKVAKAVSENGGIDILADLA-RS--TNRLVAEEVVGGLWNLSV-----GEDHKGAIARAGGIKALVDLIFKWSSWND 457 (864)
Q Consensus 386 ~~~~~~~~~i~~~g~i~~Lv~lL-~~--~~~~v~~~a~~aL~~Ls~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~~~ 457 (864)
..++...-...-..-+|+++.++ .. ....+|+.|+..|..++. .+..+.. ....+.+.+.+ +..+.
T Consensus 74 l~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~R-----I~~tl~k~l~d-p~~~l 147 (196)
T 4atg_A 74 IKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPR-----VLKTLKGVWMD-PNRSE 147 (196)
T ss_dssp HHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHH-----HHHHHHHHHTC-TTSCH
T ss_pred HcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHH-----HHHHHHHHHcC-CCCCh
Confidence 66664322222233466666655 21 233899999999999865 2233333 34455555544 34566
Q ss_pred HHHHHHHHHHHHhc
Q 048757 458 GVLERAAGALANLA 471 (864)
Q Consensus 458 ~v~~~a~~~L~~L~ 471 (864)
.....|...|..+.
T Consensus 148 ~t~YGAi~GL~~lG 161 (196)
T 4atg_A 148 DSQYGALYCLSILS 161 (196)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhH
Confidence 77777777776663
No 309
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.64 E-value=44 Score=29.65 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=54.2
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVD--SKVAKAVSENGGIDILADLARS------TNRLVAEEVVGGLWNLS 427 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls 427 (864)
++..+..-|++.++.++..|+..|-.+..+ +.....+....-+..|++++.. .++.|++.++..+..-+
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345566667899999999999999998884 5677778777778888888863 37889999888876654
No 310
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=42.46 E-value=68 Score=31.41 Aligned_cols=142 Identities=8% Similarity=0.019 Sum_probs=80.3
Q ss_pred HHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcc-cc
Q 048757 445 LVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSN-NA 523 (864)
Q Consensus 445 L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~-~~ 523 (864)
+.+++.+|+ .+-.+...++-+..++... +.+..++....+..++..+..++++++|+-.+ +. .+
T Consensus 61 ~~ki~~~WP-----~~fP~lDllRl~~~~~~~~------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~----~~~g~ 125 (253)
T 3gae_A 61 ANTIRSNWE-----IKTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNN----ENWGV 125 (253)
T ss_dssp HHHHHHHCS-----CCHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTC----TTTHH
T ss_pred HHHHHHhCC-----ccchHHHHHHHHHcCCchH------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccC----CchHH
Confidence 445555555 1334556666555554422 12222332222234577889999999999884 33 45
Q ss_pred hhhhccChHHHHHHHhcC--------CCHHHHHHHHHHHHHhcCChhh-HHHHHHCCChHHHHHHHHhc---C---CCCH
Q 048757 524 AVGLETGALEALVQLTFS--------KHEGVRQEAAGALWNLSFDDRN-REAIAAAGGVEALVALVRSC---S---SSSQ 588 (864)
Q Consensus 524 ~~~~~~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~Ls~~~~~-~~~i~~~~~i~~Lv~lL~~~---~---~~~~ 588 (864)
..+........++..+.+ .+..++.+++..+.|++..-.. +. +......+++++... . ..++
T Consensus 126 ~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~ 202 (253)
T 3gae_A 126 KLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECE 202 (253)
T ss_dssp HHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSH
T ss_pred HHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCH
Confidence 555444334445544321 2567899999999999763110 00 112344556655520 0 1378
Q ss_pred HHHHHHHHHHHHhccC
Q 048757 589 GLQERAAGALWGLSLS 604 (864)
Q Consensus 589 ~v~~~A~~aL~~L~~~ 604 (864)
+...+++.+|+++...
T Consensus 203 Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 203 EAAYRLTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC
Confidence 8999999999998753
No 311
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.45 E-value=65 Score=30.76 Aligned_cols=72 Identities=10% Similarity=0.055 Sum_probs=55.7
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHhcCCh--hhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 048757 530 GALEALVQLTFSKHEGVRQEAAGALWNLSFDD--RNREAIAAAGGVEALVALVRSCSSSSQGLQERAAGALWGLSL 603 (864)
Q Consensus 530 ~~i~~L~~lL~~~~~~v~~~a~~~L~~Ls~~~--~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A~~aL~~L~~ 603 (864)
.++..|..-|.+.++.++..|+.+|-.+..+- .....+.+...++.|+.++.+ ..++.|+..++..+..++.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHH
Confidence 45667777788899999999999998887763 345566666678888888876 4678999988888876553
No 312
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=39.53 E-value=31 Score=33.06 Aligned_cols=73 Identities=10% Similarity=0.140 Sum_probs=55.0
Q ss_pred hcHHHHHHHHccCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcC-CCHHHHHHHHHHHHHHhC
Q 048757 309 QGATLLLSLMESSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARS-PPEGLQSEVAKAIANLSV 387 (864)
Q Consensus 309 ~gv~~L~~lL~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~~~~~a~~~L~~L~~ 387 (864)
..+..|.+-|++.++.++..|...|..+....... ....|.+...+..|+.++++ .+..|+..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~------f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAP------VHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------HHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHH------HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 44677888899999999999999999987655321 23456677778888887754 567888888888777553
No 313
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=38.01 E-value=51 Score=30.03 Aligned_cols=69 Identities=17% Similarity=0.196 Sum_probs=54.5
Q ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcCcHHHHHHHHcc------CCHHHHHHHHHHHHHhc
Q 048757 359 GVRLLLDLARSPPEGLQSEVAKAIANLSVD--SKVAKAVSENGGIDILADLARS------TNRLVAEEVVGGLWNLS 427 (864)
Q Consensus 359 ~i~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~lL~~------~~~~v~~~a~~aL~~Ls 427 (864)
++..|...+++.++.++..|+..|-.+..+ +.....+.+..-+..|++++.. .++.|++.++..+..-+
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 345667778899999999999999998885 4667778777778889998852 36789999888877654
No 314
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=37.76 E-value=58 Score=29.16 Aligned_cols=73 Identities=12% Similarity=0.013 Sum_probs=55.3
Q ss_pred hcHHHHHHHHc-cCCHHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHH-HHHHhcC---CCHHHHHHHHHHHH
Q 048757 309 QGATLLLSLME-SSQQEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRL-LLDLARS---PPEGLQSEVAKAIA 383 (864)
Q Consensus 309 ~gv~~L~~lL~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~-L~~lL~~---~~~~~~~~a~~~L~ 383 (864)
.++..|.+-|+ +.++.++..|...|..+....... ....+.+...+.. |+.++.. ++..|+..++..+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~------fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~ 126 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHR------FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQ 126 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHH------HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHH------HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence 44678888887 488999999999999988766432 3456777788887 7888742 34689999988888
Q ss_pred HHhC
Q 048757 384 NLSV 387 (864)
Q Consensus 384 ~L~~ 387 (864)
..+.
T Consensus 127 ~W~~ 130 (157)
T 1elk_A 127 SWAD 130 (157)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7554
No 315
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=37.04 E-value=1.6e+02 Score=28.64 Aligned_cols=132 Identities=11% Similarity=-0.024 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhCCchhHHHHHhcCcHHHHHH-HHccCCHHHHHHHHHHHHHhcCCCC-cHHHHHhhCcHHHHHHHHcc-
Q 048757 375 QSEVAKAIANLSVDSKVAKAVSENGGIDILAD-LARSTNRLVAEEVVGGLWNLSVGED-HKGAIARAGGIKALVDLIFK- 451 (864)
Q Consensus 375 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~v~~~a~~aL~~Ls~~~~-~~~~i~~~g~i~~L~~lL~~- 451 (864)
+..+...++-+..++.... .+..++. .+.+.++..+..+++++.|+-.++. .+..+........+++.+..
T Consensus 71 ~fP~lDllRl~~~~~~~~~------~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~ 144 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 144 (253)
T ss_dssp CHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSC
T ss_pred cchHHHHHHHHHcCCchHH------HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHH
Confidence 4456677776666554321 2222222 2335578899999999999988887 46555544334455554422
Q ss_pred cC----CCCHHHHHHHHHHHHHhcCCCc-chHHHHhcCcHHHHHHHHHc--------cCchhHHHHHHHHHHHHhhc
Q 048757 452 WS----SWNDGVLERAAGALANLAADDK-CSLEVARAGGVHALVMLARS--------FMFEGVQEQAARALANLVAH 515 (864)
Q Consensus 452 ~~----~~~~~v~~~a~~~L~~L~~~~~-~~~~i~~~~~i~~Lv~ll~~--------~~~~~v~~~a~~aL~~L~~~ 515 (864)
.. ..+..++..++..+.|++.... .+. +......+++.+.. ..+++....++-|+++|...
T Consensus 145 ~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 145 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 00 1255788888899999875311 010 12334456666552 12567788888999999863
No 316
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=36.11 E-value=1.9e+02 Score=26.83 Aligned_cols=114 Identities=12% Similarity=-0.035 Sum_probs=65.6
Q ss_pred HHHHHHHHc------cCCHHHHHHHHHHHHHhcCCCCcHHHHHhhCcHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCC
Q 048757 401 IDILADLAR------STNRLVAEEVVGGLWNLSVGEDHKGAIARAGGIKALVDLIFKWSSWNDGVLERAAGALANLAADD 474 (864)
Q Consensus 401 i~~Lv~lL~------~~~~~v~~~a~~aL~~Ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~ 474 (864)
+|.+++... -.+.......++....|..++...-...-+..+|+++.++-...-+...+|+.|+..+..++..-
T Consensus 42 lPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~ 121 (196)
T 4atg_A 42 VPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTY 121 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHh
Confidence 555665542 23566666677777777666643222222336777777664322333489999999999998642
Q ss_pred cchHHHHhcCcHHHHHHHHHcc-CchhHHHHHHHHHHHHhh
Q 048757 475 KCSLEVARAGGVHALVMLARSF-MFEGVQEQAARALANLVA 514 (864)
Q Consensus 475 ~~~~~i~~~~~i~~Lv~ll~~~-~~~~v~~~a~~aL~~L~~ 514 (864)
.....-........+.+.+.++ .+.....-|+..|..+..
T Consensus 122 ~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~ 162 (196)
T 4atg_A 122 SRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK 162 (196)
T ss_dssp TTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH
T ss_pred CccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH
Confidence 2111112333455666666553 234556667777777764
No 317
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=33.04 E-value=2.5e+02 Score=24.60 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=60.1
Q ss_pred ccchhhhccChHHHHHHHhcC------CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHH
Q 048757 521 NNAAVGLETGALEALVQLTFS------KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 521 ~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
..+..+.+.|++..+-..|+. ++..+|.....+|.++..+ ++.+.+. ++...+-++..+....++.+..|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI~---~e~Lk~S-glGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKIH---KEHLVTS-GVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC---HHHHHHH-CHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCCC---HHHhhcC-CCCcchhhhhcCCccCHHHHHHH
Confidence 456677888999988888764 4788999999999999544 4555555 66666777776567789999999
Q ss_pred HHHHHHhcc
Q 048757 595 AGALWGLSL 603 (864)
Q Consensus 595 ~~aL~~L~~ 603 (864)
-..+..+++
T Consensus 128 ~~Li~~WsR 136 (145)
T 2xpp_A 128 KALVQKWTN 136 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887654
No 318
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=32.76 E-value=3.5e+02 Score=26.27 Aligned_cols=88 Identities=13% Similarity=0.101 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhcccCCcccccchHhHHHHHHhCCHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcCcH
Q 048757 323 QEVQERAAYAVATFVVIDDQNAMVDCQRAEAILRHGGVRLLLDLARSPPEGLQSEVAKAIANLSV-DSKVAKAVSENGGI 401 (864)
Q Consensus 323 ~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i 401 (864)
.+.+.....-...++...+.. . -..+++.++.+-.+.+.++|...+..+...+. +++.. ...+
T Consensus 29 ~~~kl~~L~qa~el~~~~dp~------l-----l~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~-----~~~l 92 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLGSCAE------L-----AEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL-----PHVI 92 (257)
T ss_dssp HHHHHHHHHHHHHHHTTTTGG------G-----HHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHH
T ss_pred cHHHHHHHHHHHHHHHccCHh------H-----HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 367777777777776554321 1 14567778887777889999999999999775 33322 2346
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHh
Q 048757 402 DILADLARSTNRLVAEEVVGGLWNL 426 (864)
Q Consensus 402 ~~Lv~lL~~~~~~v~~~a~~aL~~L 426 (864)
+.|..++++.++.+.+.+..+..++
T Consensus 93 ~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 93 NVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 7788888988999999988776665
No 319
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=25.97 E-value=3.6e+02 Score=24.29 Aligned_cols=80 Identities=15% Similarity=0.117 Sum_probs=61.0
Q ss_pred ccchhhhccChHHHHHHHhcC------CCHHHHHHHHHHHHHhcCChhhHHHHHHCCChHHHHHHHHhcCCCCHHHHHHH
Q 048757 521 NNAAVGLETGALEALVQLTFS------KHEGVRQEAAGALWNLSFDDRNREAIAAAGGVEALVALVRSCSSSSQGLQERA 594 (864)
Q Consensus 521 ~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~Ls~~~~~~~~i~~~~~i~~Lv~lL~~~~~~~~~v~~~A 594 (864)
..+..+.+.|++..+-..|.. ++..+|.....+|.++..+ ++.+.+. ++...+-++..+....++.+..|
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI~---~e~Lk~S-glGkvV~~l~k~~~et~~nkrla 142 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPVK---TEHLKES-GLGRVVIFYTKSKRVEAQLARLA 142 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCCC---HHHHHHH-SHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCCC---HHHHhhC-CCCceeeehhcCCcccHHHHHHH
Confidence 455667788998888888764 5778999999999998643 4455554 56666667776566789999999
Q ss_pred HHHHHHhccC
Q 048757 595 AGALWGLSLS 604 (864)
Q Consensus 595 ~~aL~~L~~~ 604 (864)
-..+..+++.
T Consensus 143 ~~Li~~WsRp 152 (170)
T 3nfq_A 143 EKLIAEWTRP 152 (170)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHHHH
Confidence 9999998863
No 320
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.24 E-value=34 Score=27.96 Aligned_cols=12 Identities=25% Similarity=0.041 Sum_probs=5.2
Q ss_pred cCCCCcEEecCC
Q 048757 180 KLTSLVGLDTSR 191 (864)
Q Consensus 180 ~~~~L~~L~l~~ 191 (864)
+|.+|+.+.+.+
T Consensus 41 ~C~~L~~i~~~~ 52 (100)
T 2lz0_A 41 GCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECC
T ss_pred ccCCccEEEEcC
Confidence 344444444443
No 321
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=25.14 E-value=81 Score=28.22 Aligned_cols=74 Identities=16% Similarity=0.055 Sum_probs=52.4
Q ss_pred ChHHHHHHHhc-CCCHHHHHHHHHHHHHhcCC--hhhHHHHHHCCChHH-HHHHHHhcCCCCHHHHHHHHHHHHHhcc
Q 048757 530 GALEALVQLTF-SKHEGVRQEAAGALWNLSFD--DRNREAIAAAGGVEA-LVALVRSCSSSSQGLQERAAGALWGLSL 603 (864)
Q Consensus 530 ~~i~~L~~lL~-~~~~~v~~~a~~~L~~Ls~~--~~~~~~i~~~~~i~~-Lv~lL~~~~~~~~~v~~~A~~aL~~L~~ 603 (864)
.++..|.+-++ +.++.++..|+.+|-.+..+ ......+.+...++. |++++.....++..|+..++..+..++.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 34556666676 47888898999888888776 334555666667787 7888853223457899999999887664
No 322
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=22.10 E-value=2.7e+02 Score=33.35 Aligned_cols=65 Identities=6% Similarity=0.020 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCCC--HHHHHHHHHHHHHhccCchhhHHhhhcCCHHHHHHHHccCCHHHHHHHHHHHHHhc
Q 048757 574 EALVALVRSCSSSS--QGLQERAAGALWGLSLSEANSIAIGREGGVAPLIALARSAVVDVHETAAGALWNLA 643 (864)
Q Consensus 574 ~~Lv~lL~~~~~~~--~~v~~~A~~aL~~L~~~~~~~~~i~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~ 643 (864)
..|+++.++ +.. ......++..|.++....+ ......+++.+++.+.++.+.++..|..++..+.
T Consensus 298 ~~l~~~~~~--~~h~~Wk~~~~~~~~l~~l~~r~d---~~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~il 364 (997)
T 1vsy_5 298 DKLLDKLDN--EKDMGWKIRMFILRFVTQIQSNLE---SKPDKRAVFSIISQISTKHPEIIHLVVKSLLSTC 364 (997)
T ss_dssp HHHHHHHHS--STTCCSCHHHHHHHHHHHHTCCSS---CCCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHHH
T ss_pred HHHHHHhcc--CCChhHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH
Confidence 333455532 344 6677777777666553321 1223345667888888999999999998886554
No 323
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=21.69 E-value=3e+02 Score=28.99 Aligned_cols=140 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred cHHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCc
Q 048757 441 GIKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNS 520 (864)
Q Consensus 441 ~i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~ 520 (864)
....+.+++.+|+ .+-.+...++-+..+..... .+..++........+..+..++++++|+-. ++
T Consensus 229 l~~~~~kil~~WP-----~~FPaLDLLRl~v~~p~~~~------~l~~li~~~l~~~~~an~MltlR~laNlF~----~~ 293 (425)
T 3pst_A 229 LLSFANTIRSNWE-----IKTPAYDIVRLIVKKLPYSS------DIKDYIEEGLGNKNITLTMLTVRILVNCFN----NE 293 (425)
T ss_dssp HHHHHHHHHHHCS-----CCHHHHHHHHHHGGGCSCGG------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTT----CT
T ss_pred HHHHHHHHHHhCC-----cccHHHHHHHHHHcCCchHH------HHHHHHHHhcCCCChhHHHHHHHHHHHhcC----Cc
Q ss_pred c-cchhhhccChHHHHHHHhcCC--------CHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHH---------
Q 048757 521 N-NAAVGLETGALEALVQLTFSK--------HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVR--------- 581 (864)
Q Consensus 521 ~-~~~~~~~~~~i~~L~~lL~~~--------~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~--------- 581 (864)
. .+..+........+++.+... +..++.+++.++.|+|.. -..+.. ......+++++.
T Consensus 294 ~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~el~~~l~e~l~~~~g~~E~~ 370 (425)
T 3pst_A 294 NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEY 370 (425)
T ss_dssp TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TTHHHHHHHHHHHTTTTSHHH
T ss_pred chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhccccccc
Q ss_pred hcCCCCHHHHHHHHHHHHHh
Q 048757 582 SCSSSSQGLQERAAGALWGL 601 (864)
Q Consensus 582 ~~~~~~~~v~~~A~~aL~~L 601 (864)
. .+++...+++.||++|
T Consensus 371 ~---~d~EA~yRlLVALGtL 387 (425)
T 3pst_A 371 Q---ECEEAAYRLTVAYGNL 387 (425)
T ss_dssp H---TSHHHHHHHHHHHHHH
T ss_pred c---CCHHHHHHHHHHHHHH
No 324
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=21.01 E-value=67 Score=27.60 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=15.9
Q ss_pred CccEEeccCCC--CCCHHHhcCCCCcCEEEEeCCC
Q 048757 135 QLVEVGFIDSG--GVDEAALENLSSVRYLSIAGTR 167 (864)
Q Consensus 135 ~L~~L~l~~c~--~i~~~~~~~~~~L~~L~l~~c~ 167 (864)
+|++|+|+++. .+....+..+++|+.|+|++.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 46666666542 1222333355555555555443
No 325
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.94 E-value=3e+02 Score=28.33 Aligned_cols=139 Identities=9% Similarity=0.039 Sum_probs=0.0
Q ss_pred HHHHHHHHcccCCCCHHHHHHHHHHHHHhcCCCcchHHHHhcCcHHHHHHHHHccCchhHHHHHHHHHHHHhhcCCCCcc
Q 048757 442 IKALVDLIFKWSSWNDGVLERAAGALANLAADDKCSLEVARAGGVHALVMLARSFMFEGVQEQAARALANLVAHGDSNSN 521 (864)
Q Consensus 442 i~~L~~lL~~~~~~~~~v~~~a~~~L~~L~~~~~~~~~i~~~~~i~~Lv~ll~~~~~~~v~~~a~~aL~~L~~~~~~~~~ 521 (864)
+..+.+++.+|+. +-.+...++-+..+.... +.+..++........+..+..++++++|+-. ++.
T Consensus 167 ~~~~~~i~~~Wp~-----~FP~LDLLRl~v~~~~~~------~~l~~li~~~~~~~~~~n~MltlR~laNlF~----~~~ 231 (362)
T 3l3f_X 167 LSFANTIRSNWEI-----KTPAYDIVRLIVKKLPYS------SDIKDYIEEGLGNKNITLTMLTVRILVNCFN----NEN 231 (362)
T ss_dssp HHHHHHHHHHCSC-----CHHHHHHHHHHGGGCSCG------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTT----CTT
T ss_pred HHHHHHHHhhCCc-----cchHHHHHHHHhcCCChH------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcc----Ccc
Q ss_pred -cchhhhccChHHHHHHHhcCC--------CHHHHHHHHHHHHHhcCC-hhhHHHHHHCCChHHHHHHHH---------h
Q 048757 522 -NAAVGLETGALEALVQLTFSK--------HEGVRQEAAGALWNLSFD-DRNREAIAAAGGVEALVALVR---------S 582 (864)
Q Consensus 522 -~~~~~~~~~~i~~L~~lL~~~--------~~~v~~~a~~~L~~Ls~~-~~~~~~i~~~~~i~~Lv~lL~---------~ 582 (864)
.+..+........+++.+... +..++.+++..+.|+|.. -..+.. ......+.+++. .
T Consensus 232 ~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el~~~l~~~l~~~~g~~E~~~ 308 (362)
T 3l3f_X 232 WGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LELLPIVADAINTKYGPLEEYQ 308 (362)
T ss_dssp THHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTHHHHHHHHHHHTTTTSHHHH
T ss_pred hHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHHHhhcccccccc
Q ss_pred cCCCCHHHHHHHHHHHHHh
Q 048757 583 CSSSSQGLQERAAGALWGL 601 (864)
Q Consensus 583 ~~~~~~~v~~~A~~aL~~L 601 (864)
.+++...+++.||++|
T Consensus 309 ---~d~EA~yRlLVALGtL 324 (362)
T 3l3f_X 309 ---ECEEAAYRLTVAYGNL 324 (362)
T ss_dssp ---TSHHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHH
Done!