BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048758
(777 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 39/234 (16%)
Query: 40 LLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLKE--LSDD 97
LL+LDD+W+ SW A S +I++T R++ V ++ E L +
Sbjct: 239 LLILDDVWD----SWV-----LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE 289
Query: 98 DCLRVLIQHSLGARYFNIPQS-LKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFV 156
L +L + + N+ ++ L E A I K+CKG PL +G LL +D N WE+
Sbjct: 290 KGLEIL------SLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYY 341
Query: 157 L----NTNIWDLRE----DKCDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEII 208
L N +R+ D + + +S L +K + S+ KD + + +
Sbjct: 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 401
Query: 209 LLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSSKDTSRFVMHDLINDL 262
+LW E ++ED+ +EFV + LF + + R+ +HDL D
Sbjct: 402 ILWDME--------TEEVEDILQEFV---NKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 39/234 (16%)
Query: 40 LLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLKE--LSDD 97
LL+LDD+W+ SW A S +I++T R++ V ++ E L +
Sbjct: 245 LLILDDVWD----SWV-----LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKE 295
Query: 98 DCLRVLIQHSLGARYFNIPQS-LKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFV 156
L +L + + N+ ++ L E A I K+CKG PL +G LL +D N WE+
Sbjct: 296 KGLEIL------SLFVNMKKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYY 347
Query: 157 L----NTNIWDLRE----DKCDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEII 208
L N +R+ D + + +S L +K + S+ KD + + +
Sbjct: 348 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 407
Query: 209 LLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSSKDTSRFVMHDLINDL 262
+LW E ++ED+ +EFV + LF + + R+ +HDL D
Sbjct: 408 ILWDME--------TEEVEDILQEFVNK---SLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/234 (23%), Positives = 98/234 (41%), Gaps = 39/234 (16%)
Query: 40 LLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLKE--LSDD 97
LL+LDD+W+ W A + +I++T R++ V ++ E L +
Sbjct: 239 LLILDDVWD----PWV-----LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGRE 289
Query: 98 DCLRVLIQHSLGARYFNIP-QSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFV 156
L +L + + N+ + L A I K+CKG PL +G LL +D N W +
Sbjct: 290 KGLEIL------SLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYY 341
Query: 157 L----NTNIWDLRE----DKCDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEII 208
L N +R+ D + + +S L +K + S+ KD + + +
Sbjct: 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLC 401
Query: 209 LLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSSKDTSRFVMHDLINDL 262
+LW E ++ED+ +EFV + LF + + + +HDL D
Sbjct: 402 VLWDLE--------TEEVEDILQEFVNK---SLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 117 QSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFVL----NTNIWDLRE----DK 168
+ L A I K+CKG PL +G LL +D N W + L N +R+ D
Sbjct: 311 EDLPAEAHSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDY 368
Query: 169 CDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMED 228
+ + +S L +K + S+ KD + + + +LW E ++ED
Sbjct: 369 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------TEEVED 420
Query: 229 LGREFVQELHSRSLFQLSSKDTSRFVMHDLINDL 262
+ +EFV + LF + + + +HDL D
Sbjct: 421 ILQEFVNK---SLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 354 YCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGN 413
+ I +LP I NL++L+ L + + + L +I+ L L + L C L+ G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 414 LTKLRHLKNSNVHSLEEMPKGFGKLTSL 441
L+ L + +L +P +LT L
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 10/143 (6%)
Query: 274 MEDTLAGENRQKFSQSLRHFSYIRGQYDGDTRLEF-ICDVQHLRTFLPMKLSDFGDNYLA 332
+ + LA + Q L + +R ++ G L I ++Q+L++ +K+ +
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS---LKIRNS-----P 217
Query: 333 WSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSR-TRIQILPESINSLY 391
SAL ++HLP+L LRG + N P G L+ L L + + LP I+ L
Sbjct: 218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277
Query: 392 NLHTILLEDCWKLKKLCKDMGNL 414
L + L C L +L + L
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQL 300
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
Query: 419 HLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENV 478
HL + + + G LT L V + S + LKS+ GR + ++E++
Sbjct: 81 HLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI 140
Query: 479 K---DV-----GDASEAQLNNKVNLEA---LILEWSARSERCEFETQVLSML---KPHR 523
D+ G ++ Q+NN VNL + L+++ + + EFE Q+ +L +P R
Sbjct: 141 SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDR 199
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 56/138 (40%), Gaps = 35/138 (25%)
Query: 361 PNEIGNLKHLRCLNLSRTRIQILPESI--------------NSLYNLHTILLEDCWKLKK 406
P NL +LR L L R++++P + N + L + +D + LK
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132
Query: 407 LCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHL 466
L +L + H S ++SLE++ LTS+ T ++L+HL
Sbjct: 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-----------------EALSHL 175
Query: 467 QG----RLKISKLENVKD 480
G RL+ + ++D
Sbjct: 176 HGLIVLRLRHLNINAIRD 193
>pdb|2JHI|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N-
Acetyl-D-Galactosamine
pdb|2JHK|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N-
Acetyl-D-Glucosamine
Length = 218
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 390 LYNLHTILLEDCWKLKKLC---KDMGNLTKLRHLKNSNVHSLEE---MPKGFGKLTSLLT 443
L HTI L DC L LC D G T + + +V + +GFG
Sbjct: 20 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGS-----Q 74
Query: 444 LGRFVVGKD-----SGSGLRQLKS-LAHLQGRLKISKLENVKDVGDASEAQL 489
LG F +G D + G +L++ L +G + +K ++ K +A + +L
Sbjct: 75 LGEFWLGNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADEAEKYKL 126
>pdb|2JHH|C Chain C, Structure Of Globular Heads Of M-Ficolin At Acidic Ph
pdb|2JHH|F Chain F, Structure Of Globular Heads Of M-Ficolin At Acidic Ph
pdb|2JHL|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With
Sialic Acid
pdb|2JHM|F Chain F, Structure Of Globular Heads Of M-Ficolin At Neutral Ph
Length = 218
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 17/112 (15%)
Query: 390 LYNLHTILLEDCWKLKKLC---KDMGNLTKLRHLKNSNVHSLEE---MPKGFGKLTSLLT 443
L HTI L DC L LC D G T + + +V + +GFG
Sbjct: 20 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGS-----Q 74
Query: 444 LGRFVVGKD-----SGSGLRQLKS-LAHLQGRLKISKLENVKDVGDASEAQL 489
LG F +G D + G +L++ L +G + +K ++ K +A + +L
Sbjct: 75 LGEFWLGNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADEAEKYKL 126
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 35/213 (16%)
Query: 370 LRCLNLSRTR-IQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKL----------- 417
++C LS R ++LP L + L+DC + CKD+ + ++
Sbjct: 9 IQCEELSDARWAELLP----LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64
Query: 418 RHLKNSNVHS-LEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLE 476
L + VH L+ + K+ L + G G L++L LQ L +S +
Sbjct: 65 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ-ELHLS--D 121
Query: 477 NVKDVGDAS-----EAQLNNKVNLEALILEW-SARSERCEFETQVLSMLKPHRDVQELTI 530
N+ +GDA E L+ + LE L LE+ S + CE + S+L+ D +ELT+
Sbjct: 122 NL--LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE---PLASVLRAKPDFKELTV 176
Query: 531 TGY----SGTKFPIWLGDSSFSKLVQLKLEGCG 559
+ +G + S +L LKLE CG
Sbjct: 177 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 209
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 35/213 (16%)
Query: 370 LRCLNLSRTR-IQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKL----------- 417
++C LS R ++LP L + L+DC + CKD+ + ++
Sbjct: 10 IQCEELSDARWAELLP----LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65
Query: 418 RHLKNSNVHS-LEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLE 476
L + VH L+ + K+ L + G G L++L LQ L +S +
Sbjct: 66 NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQ-ELHLS--D 122
Query: 477 NVKDVGDAS-----EAQLNNKVNLEALILEW-SARSERCEFETQVLSMLKPHRDVQELTI 530
N+ +GDA E L+ + LE L LE+ S + CE + S+L+ D +ELT+
Sbjct: 123 NL--LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE---PLASVLRAKPDFKELTV 177
Query: 531 TGY----SGTKFPIWLGDSSFSKLVQLKLEGCG 559
+ +G + S +L LKLE CG
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCG 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,941,496
Number of Sequences: 62578
Number of extensions: 897980
Number of successful extensions: 1910
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1891
Number of HSP's gapped (non-prelim): 33
length of query: 777
length of database: 14,973,337
effective HSP length: 106
effective length of query: 671
effective length of database: 8,340,069
effective search space: 5596186299
effective search space used: 5596186299
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)