Query 048758
Match_columns 777
No_of_seqs 333 out of 3288
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 12:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-64 4E-69 568.4 30.1 607 2-661 225-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.7E-57 1.7E-61 537.0 42.3 624 3-742 266-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.6E-29 3.4E-34 303.8 20.6 400 340-773 184-594 (968)
4 PLN00113 leucine-rich repeat r 100.0 5.8E-29 1.3E-33 298.9 21.1 397 343-768 139-565 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 9.1E-30 2E-34 261.3 6.0 216 2-220 64-285 (287)
6 PLN03210 Resistant to P. syrin 99.9 1.8E-21 3.9E-26 233.7 25.0 416 206-712 470-910 (1153)
7 KOG4194 Membrane glycoprotein 99.9 1.4E-22 3.1E-27 205.6 3.2 351 325-757 84-446 (873)
8 KOG0472 Leucine-rich repeat pr 99.8 8.5E-24 1.8E-28 205.1 -9.1 391 336-768 83-544 (565)
9 KOG4194 Membrane glycoprotein 99.8 8.9E-22 1.9E-26 199.8 2.5 340 345-768 79-433 (873)
10 KOG0444 Cytoskeletal regulator 99.8 3.2E-22 6.8E-27 204.3 -3.9 302 340-743 74-379 (1255)
11 KOG0444 Cytoskeletal regulator 99.8 2.4E-22 5.1E-27 205.2 -5.3 358 325-764 13-376 (1255)
12 KOG0618 Serine/threonine phosp 99.8 5.1E-22 1.1E-26 212.5 -7.8 238 336-611 60-320 (1081)
13 KOG0472 Leucine-rich repeat pr 99.7 8.1E-20 1.8E-24 177.7 -3.6 373 333-740 103-541 (565)
14 KOG0618 Serine/threonine phosp 99.7 2E-19 4.3E-24 193.0 -5.3 383 340-776 41-479 (1081)
15 PRK15387 E3 ubiquitin-protein 99.6 1.8E-14 3.9E-19 160.5 16.7 79 344-433 201-279 (788)
16 PRK15370 E3 ubiquitin-protein 99.5 1.5E-13 3.2E-18 154.5 11.7 83 344-435 178-260 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 6.3E-13 1.4E-17 148.3 14.1 78 344-433 222-299 (788)
18 KOG4658 Apoptotic ATPase [Sign 99.4 5.4E-14 1.2E-18 160.4 4.7 108 342-450 543-653 (889)
19 KOG4237 Extracellular matrix p 99.4 2.5E-14 5.4E-19 139.8 -3.5 382 345-773 68-486 (498)
20 PRK15370 E3 ubiquitin-protein 99.3 5.4E-12 1.2E-16 141.9 8.7 92 344-446 199-290 (754)
21 KOG0617 Ras suppressor protein 99.3 7.4E-14 1.6E-18 120.5 -5.2 101 342-444 31-132 (264)
22 KOG4237 Extracellular matrix p 99.2 1.1E-12 2.3E-17 128.5 -1.8 388 333-759 80-497 (498)
23 KOG0617 Ras suppressor protein 99.2 5.4E-13 1.2E-17 115.2 -4.6 90 357-449 23-112 (264)
24 cd00116 LRR_RI Leucine-rich re 99.0 3.5E-11 7.6E-16 125.8 -0.3 70 331-401 10-91 (319)
25 cd00116 LRR_RI Leucine-rich re 99.0 4.6E-11 1E-15 124.9 -2.6 136 303-446 13-172 (319)
26 KOG4341 F-box protein containi 98.7 2.6E-10 5.7E-15 113.0 -6.7 83 345-427 139-228 (483)
27 KOG0532 Leucine-rich repeat (L 98.7 1.4E-09 3.1E-14 111.9 -3.2 103 338-444 92-194 (722)
28 KOG3207 Beta-tubulin folding c 98.6 4.1E-09 8.8E-14 105.4 -1.6 128 629-758 196-334 (505)
29 KOG4341 F-box protein containi 98.6 8.8E-10 1.9E-14 109.4 -6.3 265 489-767 160-443 (483)
30 COG4886 Leucine-rich repeat (L 98.6 3.8E-08 8.2E-13 106.0 5.2 107 340-449 112-219 (394)
31 PF14580 LRR_9: Leucine-rich r 98.5 8.8E-08 1.9E-12 87.6 5.0 107 342-452 40-153 (175)
32 KOG3207 Beta-tubulin folding c 98.5 8.8E-08 1.9E-12 96.0 4.4 151 287-445 120-277 (505)
33 KOG0532 Leucine-rich repeat (L 98.5 8.3E-09 1.8E-13 106.5 -3.7 193 343-581 74-270 (722)
34 PF14580 LRR_9: Leucine-rich r 98.4 1.3E-07 2.7E-12 86.6 2.2 101 341-446 16-120 (175)
35 PRK15386 type III secretion pr 98.4 2E-06 4.4E-11 88.4 11.1 55 695-762 156-212 (426)
36 PF13855 LRR_8: Leucine rich r 98.3 8.9E-07 1.9E-11 66.2 4.5 56 345-401 2-59 (61)
37 PF13855 LRR_8: Leucine rich r 98.3 8.5E-07 1.8E-11 66.3 4.4 58 368-426 1-60 (61)
38 PRK15386 type III secretion pr 98.3 1.6E-06 3.4E-11 89.2 7.1 135 629-775 51-203 (426)
39 KOG1259 Nischarin, modulator o 98.2 1.4E-07 3.1E-12 89.6 -1.0 103 340-446 210-336 (490)
40 PLN03150 hypothetical protein; 98.2 2.2E-06 4.7E-11 96.8 6.8 94 345-438 419-513 (623)
41 KOG1259 Nischarin, modulator o 98.2 2.6E-07 5.7E-12 87.9 -0.8 100 342-446 282-381 (490)
42 COG4886 Leucine-rich repeat (L 98.1 1.4E-06 3E-11 93.9 3.7 102 340-444 135-237 (394)
43 PLN03150 hypothetical protein; 98.0 6.2E-06 1.3E-10 93.1 6.7 104 326-430 425-530 (623)
44 PRK04841 transcriptional regul 98.0 0.00017 3.7E-09 87.1 19.3 213 25-267 107-332 (903)
45 KOG1909 Ran GTPase-activating 98.0 4.4E-07 9.5E-12 88.7 -3.1 91 336-426 22-131 (382)
46 PF12799 LRR_4: Leucine Rich r 98.0 7.9E-06 1.7E-10 55.6 3.8 38 369-407 2-39 (44)
47 KOG2120 SCF ubiquitin ligase, 98.0 7.8E-08 1.7E-12 91.4 -8.9 109 494-612 186-297 (419)
48 PF12799 LRR_4: Leucine Rich r 98.0 7.6E-06 1.6E-10 55.7 3.1 40 344-384 1-40 (44)
49 KOG2120 SCF ubiquitin ligase, 97.9 6.3E-07 1.4E-11 85.4 -3.1 82 344-426 185-271 (419)
50 KOG0531 Protein phosphatase 1, 97.8 3.4E-06 7.3E-11 91.0 -0.2 103 340-447 91-194 (414)
51 KOG4579 Leucine-rich repeat (L 97.8 8.5E-06 1.8E-10 68.7 1.4 96 336-434 45-141 (177)
52 KOG1909 Ran GTPase-activating 97.7 9.3E-06 2E-10 79.6 1.2 100 325-426 36-168 (382)
53 KOG0531 Protein phosphatase 1, 97.7 5.8E-06 1.3E-10 89.1 -1.2 104 342-450 70-173 (414)
54 KOG3665 ZYG-1-like serine/thre 97.5 8.3E-05 1.8E-09 83.8 4.3 132 288-427 122-262 (699)
55 KOG2982 Uncharacterized conser 97.5 6.4E-05 1.4E-09 72.1 2.8 87 339-426 66-157 (418)
56 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.2E-09 80.9 3.5 80 344-425 122-205 (699)
57 KOG4579 Leucine-rich repeat (L 97.2 2.8E-05 6E-10 65.7 -3.0 99 344-445 27-129 (177)
58 KOG1947 Leucine rich repeat pr 97.1 5.2E-05 1.1E-09 84.4 -3.5 228 522-766 187-443 (482)
59 KOG2982 Uncharacterized conser 97.0 0.00031 6.7E-09 67.5 2.2 98 345-446 46-153 (418)
60 TIGR03015 pepcterm_ATPase puta 97.0 0.013 2.8E-07 59.4 13.6 139 3-144 86-242 (269)
61 KOG1859 Leucine-rich repeat pr 96.9 2.9E-05 6.3E-10 83.2 -6.4 108 336-449 179-289 (1096)
62 KOG1859 Leucine-rich repeat pr 96.9 7.2E-05 1.6E-09 80.3 -4.1 96 325-426 193-290 (1096)
63 KOG1947 Leucine rich repeat pr 96.8 0.00012 2.7E-09 81.4 -2.9 231 489-742 184-443 (482)
64 PRK00411 cdc6 cell division co 96.7 0.055 1.2E-06 58.2 16.1 227 3-246 101-358 (394)
65 COG5238 RNA1 Ran GTPase-activa 96.6 7.9E-05 1.7E-09 70.5 -5.3 91 340-431 26-135 (388)
66 COG3903 Predicted ATPase [Gene 96.4 0.003 6.6E-08 64.4 3.9 230 25-268 76-315 (414)
67 COG2909 MalT ATP-dependent tra 96.4 0.023 5E-07 63.3 10.8 218 21-269 111-340 (894)
68 KOG1644 U2-associated snRNP A' 96.3 0.0056 1.2E-07 55.9 4.4 99 345-447 43-148 (233)
69 COG5238 RNA1 Ran GTPase-activa 96.2 0.0016 3.4E-08 62.0 0.8 79 325-405 36-133 (388)
70 TIGR02928 orc1/cdc6 family rep 96.0 0.84 1.8E-05 48.5 20.6 229 3-247 90-351 (365)
71 KOG2739 Leucine-rich acidic nu 96.0 0.004 8.7E-08 59.4 2.4 104 343-450 42-154 (260)
72 KOG2123 Uncharacterized conser 96.0 0.00049 1.1E-08 65.6 -3.6 101 343-447 18-125 (388)
73 PF00560 LRR_1: Leucine Rich R 96.0 0.0031 6.7E-08 35.5 1.0 17 370-386 2-18 (22)
74 KOG2739 Leucine-rich acidic nu 95.4 0.0068 1.5E-07 57.9 1.3 86 340-426 61-154 (260)
75 KOG1644 U2-associated snRNP A' 95.1 0.024 5.3E-07 51.9 3.9 85 340-426 60-151 (233)
76 PF05729 NACHT: NACHT domain 95.0 0.041 8.9E-07 50.8 5.4 73 35-107 79-163 (166)
77 KOG2123 Uncharacterized conser 94.8 0.005 1.1E-07 58.9 -1.3 82 339-422 36-124 (388)
78 PRK06893 DNA replication initi 94.8 0.054 1.2E-06 53.0 5.8 97 39-139 93-202 (229)
79 PF00560 LRR_1: Leucine Rich R 94.7 0.02 4.3E-07 32.2 1.5 21 392-413 1-21 (22)
80 TIGR00635 ruvB Holliday juncti 94.5 0.35 7.5E-06 49.9 11.4 156 67-247 130-290 (305)
81 KOG3864 Uncharacterized conser 94.4 0.0069 1.5E-07 55.4 -1.3 68 692-764 122-190 (221)
82 PRK00080 ruvB Holliday junctio 94.2 0.14 3E-06 53.3 7.7 155 68-247 152-311 (328)
83 PF13504 LRR_7: Leucine rich r 93.9 0.044 9.5E-07 28.5 1.6 15 727-742 2-16 (17)
84 PF13504 LRR_7: Leucine rich r 93.9 0.036 7.8E-07 28.8 1.2 15 369-383 2-16 (17)
85 PF01637 Arch_ATPase: Archaeal 93.8 0.26 5.7E-06 48.3 8.5 113 24-139 103-233 (234)
86 KOG0473 Leucine-rich repeat pr 93.4 0.0037 8.1E-08 58.1 -5.0 86 340-427 38-123 (326)
87 PRK07471 DNA polymerase III su 91.2 1.2 2.6E-05 46.8 9.5 110 23-141 123-239 (365)
88 KOG3864 Uncharacterized conser 91.0 0.035 7.7E-07 50.9 -1.7 18 648-665 122-139 (221)
89 COG3899 Predicted ATPase [Gene 89.5 2.8 6E-05 49.5 11.6 168 35-211 152-333 (849)
90 smart00369 LRR_TYP Leucine-ric 89.2 0.3 6.4E-06 28.7 1.8 19 368-386 2-20 (26)
91 smart00370 LRR Leucine-rich re 89.2 0.3 6.4E-06 28.7 1.8 19 368-386 2-20 (26)
92 PF13173 AAA_14: AAA domain 89.2 0.5 1.1E-05 41.3 4.1 69 28-98 52-126 (128)
93 TIGR00678 holB DNA polymerase 88.7 2.9 6.2E-05 39.4 9.2 90 36-135 95-186 (188)
94 PRK05564 DNA polymerase III su 88.4 2.7 5.9E-05 43.4 9.5 97 36-140 92-190 (313)
95 PTZ00112 origin recognition co 88.2 18 0.00039 42.1 15.8 228 4-247 833-1087(1164)
96 PRK09087 hypothetical protein; 87.5 2.1 4.5E-05 41.6 7.5 94 39-138 89-193 (226)
97 TIGR03420 DnaA_homol_Hda DnaA 87.4 1.4 3E-05 43.1 6.4 99 39-141 92-202 (226)
98 PRK07003 DNA polymerase III su 83.8 6.3 0.00014 44.9 9.8 102 36-141 118-222 (830)
99 PRK09112 DNA polymerase III su 83.6 5.8 0.00013 41.5 9.0 111 23-140 123-240 (351)
100 PF13306 LRR_5: Leucine rich r 83.5 2.5 5.5E-05 36.7 5.6 57 340-399 31-89 (129)
101 smart00369 LRR_TYP Leucine-ric 83.0 0.93 2E-05 26.5 1.7 19 391-410 2-20 (26)
102 smart00370 LRR Leucine-rich re 83.0 0.93 2E-05 26.5 1.7 19 391-410 2-20 (26)
103 smart00367 LRR_CC Leucine-rich 82.2 0.9 1.9E-05 26.6 1.4 17 749-765 1-17 (26)
104 PRK06645 DNA polymerase III su 81.8 4.6 0.0001 44.4 7.7 95 36-134 127-223 (507)
105 KOG0473 Leucine-rich repeat pr 81.5 0.1 2.2E-06 48.9 -4.2 82 363-446 37-118 (326)
106 PRK08727 hypothetical protein; 81.5 4.8 0.0001 39.4 7.1 94 39-136 95-200 (233)
107 smart00364 LRR_BAC Leucine-ric 80.6 0.96 2.1E-05 26.4 1.1 19 725-744 1-19 (26)
108 TIGR02903 spore_lon_C ATP-depe 79.7 6.1 0.00013 44.9 8.1 115 25-143 280-398 (615)
109 PF13401 AAA_22: AAA domain; P 78.9 3.9 8.4E-05 35.6 5.1 72 2-76 52-125 (131)
110 PRK05707 DNA polymerase III su 78.8 16 0.00035 37.8 10.2 95 38-140 107-203 (328)
111 PRK06620 hypothetical protein; 77.1 7.2 0.00016 37.6 6.7 90 39-134 87-183 (214)
112 PF13306 LRR_5: Leucine rich r 77.0 5.3 0.00012 34.6 5.4 98 339-444 7-108 (129)
113 PRK07940 DNA polymerase III su 77.0 12 0.00026 39.8 8.9 92 37-137 117-210 (394)
114 PRK13342 recombination factor 76.9 9.4 0.0002 41.2 8.3 102 35-140 90-196 (413)
115 PLN03025 replication factor C 76.5 15 0.00033 38.0 9.4 94 37-134 99-194 (319)
116 PRK08084 DNA replication initi 75.9 8.5 0.00018 37.7 7.0 94 39-137 99-206 (235)
117 PRK14963 DNA polymerase III su 73.7 9.9 0.00021 41.9 7.4 98 36-137 115-214 (504)
118 PRK08903 DnaA regulatory inact 73.6 9 0.0002 37.3 6.5 102 39-144 92-203 (227)
119 PRK12323 DNA polymerase III su 73.0 32 0.00069 38.8 10.9 97 36-136 123-221 (700)
120 PRK08769 DNA polymerase III su 72.4 22 0.00047 36.6 9.1 96 36-141 112-209 (319)
121 PRK12402 replication factor C 70.1 16 0.00034 38.2 7.9 97 37-137 125-223 (337)
122 PRK14087 dnaA chromosomal repl 69.9 31 0.00066 37.6 10.1 108 30-141 200-320 (450)
123 PRK14961 DNA polymerase III su 69.9 20 0.00043 37.9 8.5 96 36-135 118-215 (363)
124 PRK05642 DNA replication initi 69.6 11 0.00024 36.9 6.1 105 30-139 91-207 (234)
125 TIGR02397 dnaX_nterm DNA polym 69.4 20 0.00043 37.7 8.6 101 36-140 116-218 (355)
126 PF13516 LRR_6: Leucine Rich r 67.8 2.1 4.5E-05 24.4 0.4 14 368-381 2-15 (24)
127 PRK14959 DNA polymerase III su 67.6 20 0.00042 40.4 8.0 105 36-144 118-225 (624)
128 PF14516 AAA_35: AAA-like doma 66.4 29 0.00063 36.1 8.7 54 86-147 193-246 (331)
129 smart00365 LRR_SD22 Leucine-ri 64.8 4.8 0.0001 23.6 1.5 14 368-381 2-15 (26)
130 PF00308 Bac_DnaA: Bacterial d 64.3 9 0.0002 37.1 4.2 101 30-137 91-205 (219)
131 PRK08691 DNA polymerase III su 64.2 47 0.001 37.9 10.1 96 36-135 118-215 (709)
132 COG0593 DnaA ATPase involved i 64.2 19 0.00041 38.1 6.8 98 39-138 177-288 (408)
133 PRK14955 DNA polymerase III su 63.0 43 0.00094 35.9 9.5 96 36-135 126-223 (397)
134 PRK07399 DNA polymerase III su 62.4 41 0.0009 34.6 8.8 104 28-139 110-220 (314)
135 PRK06871 DNA polymerase III su 62.0 54 0.0012 33.8 9.5 91 36-135 106-198 (325)
136 PRK14086 dnaA chromosomal repl 61.0 36 0.00078 38.2 8.5 88 40-133 380-481 (617)
137 KOG0989 Replication factor C, 60.6 16 0.00035 36.5 5.1 98 39-140 131-231 (346)
138 PRK14951 DNA polymerase III su 59.0 44 0.00095 37.9 8.9 96 37-136 124-221 (618)
139 PRK14960 DNA polymerase III su 58.2 70 0.0015 36.4 10.0 95 36-134 117-213 (702)
140 KOG2227 Pre-initiation complex 58.0 67 0.0014 34.4 9.2 121 24-144 241-376 (529)
141 PRK14956 DNA polymerase III su 57.5 28 0.0006 37.9 6.7 95 36-134 120-216 (484)
142 cd00561 CobA_CobO_BtuR ATP:cor 57.3 14 0.0003 33.4 3.8 52 27-78 84-139 (159)
143 PRK07993 DNA polymerase III su 56.9 65 0.0014 33.5 9.2 92 36-136 107-200 (334)
144 PRK00440 rfc replication facto 56.8 41 0.0009 34.6 8.0 96 37-136 102-199 (319)
145 COG2256 MGS1 ATPase related to 56.7 36 0.00079 35.5 7.0 161 35-199 102-279 (436)
146 PRK06964 DNA polymerase III su 56.5 62 0.0013 33.7 8.9 90 37-138 132-223 (342)
147 PRK14949 DNA polymerase III su 56.4 50 0.0011 38.9 8.8 101 36-140 118-221 (944)
148 PRK06305 DNA polymerase III su 55.9 66 0.0014 35.1 9.5 101 36-140 120-223 (451)
149 COG1373 Predicted ATPase (AAA+ 55.8 41 0.0009 36.0 7.8 77 24-103 78-163 (398)
150 COG1474 CDC6 Cdc6-related prot 55.6 2.7E+02 0.0059 29.3 13.8 139 3-142 88-240 (366)
151 TIGR01242 26Sp45 26S proteasom 55.4 25 0.00054 37.2 6.1 94 36-134 214-328 (364)
152 PRK06090 DNA polymerase III su 54.8 1E+02 0.0023 31.7 10.1 106 22-140 89-201 (319)
153 PRK13341 recombination factor 54.2 51 0.0011 38.3 8.6 93 36-134 108-211 (725)
154 PRK14957 DNA polymerase III su 54.2 55 0.0012 36.5 8.5 102 36-141 118-222 (546)
155 PRK08451 DNA polymerase III su 53.6 1.1E+02 0.0023 34.2 10.5 98 36-137 116-215 (535)
156 PRK07764 DNA polymerase III su 52.6 51 0.0011 38.9 8.3 96 36-135 119-216 (824)
157 PRK07132 DNA polymerase III su 50.8 1.4E+02 0.003 30.5 10.2 96 36-141 89-186 (299)
158 PRK07994 DNA polymerase III su 50.5 51 0.0011 37.5 7.7 101 36-140 118-221 (647)
159 PRK14964 DNA polymerase III su 50.4 1E+02 0.0022 33.9 9.7 96 36-135 115-212 (491)
160 PRK14971 DNA polymerase III su 49.2 87 0.0019 35.7 9.3 96 36-135 120-217 (614)
161 PRK14954 DNA polymerase III su 47.9 1E+02 0.0022 35.2 9.4 99 36-138 126-227 (620)
162 PRK14950 DNA polymerase III su 47.8 83 0.0018 35.8 9.0 99 36-138 119-219 (585)
163 PRK04132 replication factor C 47.7 1E+02 0.0022 36.4 9.7 114 22-139 609-731 (846)
164 PRK14962 DNA polymerase III su 47.6 57 0.0012 35.8 7.3 104 36-143 116-222 (472)
165 PRK04195 replication factor C 45.8 2.4E+02 0.0051 31.2 12.0 163 37-219 98-271 (482)
166 PRK14958 DNA polymerase III su 43.9 1E+02 0.0022 34.3 8.6 96 36-135 118-215 (509)
167 smart00368 LRR_RI Leucine rich 43.5 17 0.00036 21.7 1.4 14 368-381 2-15 (28)
168 PRK05896 DNA polymerase III su 41.9 1.2E+02 0.0025 34.3 8.6 101 38-142 120-223 (605)
169 PRK09111 DNA polymerase III su 41.5 1.5E+02 0.0033 33.6 9.7 99 36-138 131-231 (598)
170 PRK14969 DNA polymerase III su 40.9 85 0.0018 35.1 7.6 101 36-140 118-221 (527)
171 PRK07133 DNA polymerase III su 40.6 1.4E+02 0.0031 34.4 9.3 102 36-141 117-221 (725)
172 PRK12422 chromosomal replicati 40.5 71 0.0015 34.7 6.7 69 39-109 204-286 (445)
173 TIGR00362 DnaA chromosomal rep 40.3 29 0.00062 37.4 3.7 92 40-135 202-305 (405)
174 PRK14970 DNA polymerase III su 39.1 94 0.002 32.9 7.4 96 36-135 107-204 (367)
175 KOG0741 AAA+-type ATPase [Post 36.3 3.8E+02 0.0082 29.6 10.7 91 33-130 594-704 (744)
176 PRK14088 dnaA chromosomal repl 36.1 56 0.0012 35.5 5.1 91 37-133 194-298 (440)
177 PRK08058 DNA polymerase III su 36.0 2.4E+02 0.0052 29.3 9.6 71 36-106 109-181 (329)
178 PRK07414 cob(I)yrinic acid a,c 35.9 43 0.00094 30.9 3.6 53 26-78 103-159 (178)
179 PRK14948 DNA polymerase III su 35.8 2.3E+02 0.005 32.4 10.0 99 36-138 120-220 (620)
180 PRK06647 DNA polymerase III su 35.3 2.2E+02 0.0047 32.2 9.6 96 36-135 118-215 (563)
181 PF02572 CobA_CobO_BtuR: ATP:c 35.2 35 0.00076 31.4 2.9 54 25-78 83-140 (172)
182 PRK04966 hypothetical protein; 33.9 1E+02 0.0023 23.4 4.6 28 19-46 31-58 (72)
183 PRK14953 DNA polymerase III su 33.8 2.1E+02 0.0046 31.6 9.1 98 36-137 118-217 (486)
184 cd00009 AAA The AAA+ (ATPases 33.6 43 0.00094 29.2 3.3 44 35-78 82-131 (151)
185 PF05621 TniB: Bacterial TniB 33.2 3E+02 0.0064 28.0 9.1 134 2-137 110-258 (302)
186 PRK14952 DNA polymerase III su 32.7 2.7E+02 0.0059 31.5 9.8 103 36-142 117-222 (584)
187 TIGR00708 cobA cob(I)alamin ad 32.6 46 0.001 30.6 3.2 54 25-78 84-141 (173)
188 PRK05986 cob(I)alamin adenolsy 32.4 54 0.0012 30.7 3.6 53 26-78 103-159 (191)
189 TIGR02880 cbbX_cfxQ probable R 31.4 1.3E+02 0.0028 30.5 6.6 72 37-108 121-209 (284)
190 PRK00149 dnaA chromosomal repl 31.3 92 0.002 34.1 5.9 91 39-135 213-317 (450)
191 CHL00181 cbbX CbbX; Provisiona 31.1 1.8E+02 0.0039 29.5 7.5 71 38-108 123-210 (287)
192 PRK14965 DNA polymerase III su 31.0 1.2E+02 0.0027 34.3 6.9 101 36-140 118-221 (576)
193 PF02463 SMC_N: RecF/RecN/SMC 30.8 33 0.00071 33.1 2.1 48 37-84 158-206 (220)
194 PRK08699 DNA polymerase III su 28.7 1.7E+02 0.0037 30.3 7.0 67 40-106 116-184 (325)
195 COG3267 ExeA Type II secretory 28.6 4.9E+02 0.011 25.7 9.3 132 4-141 95-246 (269)
196 KOG3763 mRNA export factor TAP 27.6 12 0.00027 40.4 -1.5 91 520-611 215-311 (585)
197 PRK00304 hypothetical protein; 26.4 1.7E+02 0.0036 22.6 4.6 28 19-46 30-57 (75)
198 PRK08116 hypothetical protein; 25.2 48 0.001 33.2 2.2 46 30-76 172-220 (268)
199 COG2109 BtuR ATP:corrinoid ade 24.7 1E+02 0.0023 28.6 3.9 54 25-78 109-166 (198)
200 PHA02544 44 clamp loader, smal 24.1 1.9E+02 0.0042 29.7 6.5 69 37-105 100-171 (316)
201 PF06794 UPF0270: Uncharacteri 21.5 1.5E+02 0.0032 22.6 3.5 28 19-46 31-58 (70)
202 PRK03992 proteasome-activating 21.1 2.7E+02 0.0058 29.7 7.0 43 67-109 270-317 (389)
203 PF05725 FNIP: FNIP Repeat; I 21.1 1.6E+02 0.0035 19.7 3.4 10 724-733 10-19 (44)
204 PF13177 DNA_pol3_delta2: DNA 21.0 68 0.0015 29.2 2.1 56 22-78 83-143 (162)
205 PF00004 AAA: ATPase family as 20.0 1.5E+02 0.0033 25.2 4.2 40 38-77 59-112 (132)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-64 Score=568.41 Aligned_cols=607 Identities=30% Similarity=0.470 Sum_probs=447.5
Q ss_pred hhHHHHHHHhhcCCCCC-CCCCHHHHHHHHHHHhCCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHH
Q 048758 2 FRISKSILNSVAKDQSN-NDDDLNSLQVKLKERLSGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA 80 (777)
Q Consensus 2 ~~l~~~il~~l~~~~~~-~~~~~~~~~~~l~~~L~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~ 80 (777)
.++|++|+..++..+.. .....++.+..|.+.|++|||+|||||||+. .+|+.++.++|....||||++|||++.|+
T Consensus 225 ~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~ 302 (889)
T KOG4658|consen 225 RKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVC 302 (889)
T ss_pred HhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhh
Confidence 57999999999875542 2223479999999999999999999999998 67999999999998999999999999999
Q ss_pred hh-cccCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHHHhc
Q 048758 81 AT-MRAVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFVLNT 159 (777)
Q Consensus 81 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~~~~ 159 (777)
.. +++...++++.|+.+|||+||++.||.... ...+.++++|++|+++|+|+|||+.++|+.|+.|...++|+++.+.
T Consensus 303 ~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~ 381 (889)
T KOG4658|consen 303 GRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNV 381 (889)
T ss_pred hccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcc
Confidence 99 788889999999999999999999987643 2334489999999999999999999999999999999999999987
Q ss_pred ccccccc----CccCchhhHhhcccCCChhhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHHHHHHHHH
Q 048758 160 NIWDLRE----DKCDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMEDLGREFVQ 235 (777)
Q Consensus 160 ~~~~~~~----~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~ 235 (777)
..+.... ..+.++.++++|||.||++.|.||+|||+||+|+.|+++.++.+|+|+||+.+...+..+++.|+++++
T Consensus 382 l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~ 461 (889)
T KOG4658|consen 382 LKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIE 461 (889)
T ss_pred ccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHH
Confidence 7554222 246899999999999998899999999999999999999999999999999987778899999999999
Q ss_pred HHhhCcccccccC--CCCcEEecHHHHHHHHHhhc-----cceEEeec--ccccccccccCccceEEEEEeCcCCCCcch
Q 048758 236 ELHSRSLFQLSSK--DTSRFVMHDLINDLARWAAG-----EQYFRMED--TLAGENRQKFSQSLRHFSYIRGQYDGDTRL 306 (777)
Q Consensus 236 ~L~~~sLl~~~~~--~~~~~~mhd~i~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 306 (777)
+|++++|+..... ...+|.|||++|++|.++++ .+...... .....+....+..+|+++++.+.....
T Consensus 462 ~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~--- 538 (889)
T KOG4658|consen 462 ELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI--- 538 (889)
T ss_pred HHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---
Confidence 9999999988762 45789999999999999999 44433332 222234455678889999988764433
Q ss_pred hhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchh
Q 048758 307 EFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES 386 (777)
Q Consensus 307 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~ 386 (777)
.....++++++|......+ ........+|..++.|+||||++|..+..+|++|++|.+||||+++++.+..+|..
T Consensus 539 ~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~ 613 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG 613 (889)
T ss_pred cCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH
Confidence 2334677899998877532 12445666799999999999999999999999999999999999999999999999
Q ss_pred hhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCcccccccccc
Q 048758 387 INSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHL 466 (777)
Q Consensus 387 i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 466 (777)
+.+|++|.+|++..+..+..+|.....|++|++|.+.... ...-...++.+.+|++|........+...+..+..+..|
T Consensus 614 l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L 692 (889)
T KOG4658|consen 614 LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRL 692 (889)
T ss_pred HHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHH
Confidence 9999999999999997777777767779999999987754 121122345555666665444433222111111111111
Q ss_pred CCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCc-ccCC-
Q 048758 467 QGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPI-WLGD- 544 (777)
Q Consensus 467 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~- 544 (777)
. +. ...+.+.. .........+..+.+|+.|.+.++.+.+... |...
T Consensus 693 ~-~~------------------------~~~l~~~~-------~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~ 740 (889)
T KOG4658|consen 693 R-SL------------------------LQSLSIEG-------CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESL 740 (889)
T ss_pred H-HH------------------------hHhhhhcc-------cccceeecccccccCcceEEEEcCCCchhhccccccc
Confidence 1 00 00000000 0011223344556667777777766643221 2111
Q ss_pred --C-CCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCCCceEeCcccccC--C--CCCCCCCCcee-eccCccchhh
Q 048758 545 --S-SFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMDGVKIVGLEFYGN--I--CSVPFPSLEAL-SFSDMTEWEE 616 (777)
Q Consensus 545 --~-~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~--~--~~~~~~~L~~L-~l~~~~~l~~ 616 (777)
. .|+++.++.+.+|.....+.+....|+|+.|.+.+|..++.+....... . ...+|.+++.+ .+.+.+.++.
T Consensus 741 ~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 741 IVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred chhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCce
Confidence 0 1556777777777777766666667888888888877666553221111 0 11345556656 4555554444
Q ss_pred hhccccCCCCCCCCCccEEEEecCCCcccccCCCCCccEEEEcCC
Q 048758 617 WIPCGAGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGC 661 (777)
Q Consensus 617 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~ 661 (777)
+. ..|-.++.|+.+.++.|+++ ..+|.+..+.+.+|
T Consensus 821 i~-----~~~l~~~~l~~~~ve~~p~l----~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 821 LY-----WLPLSFLKLEELIVEECPKL----GKLPLLSTLTIVGC 856 (889)
T ss_pred eE-----ecccCccchhheehhcCccc----ccCccccccceecc
Confidence 31 12233455777777777654 45677777777775
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.7e-57 Score=536.99 Aligned_cols=624 Identities=21% Similarity=0.239 Sum_probs=415.5
Q ss_pred hHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhCCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHHhh
Q 048758 3 RISKSILNSVAKDQSNNDDDLNSLQVKLKERLSGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAAT 82 (777)
Q Consensus 3 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~ 82 (777)
.++++++.++.......... ...++++++++|+||||||||+. .+|+.+.....++++||+||||||+++++..
T Consensus 266 ~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 266 HLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred HHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 35667777765443212222 24578889999999999999875 6788888888888999999999999999988
Q ss_pred cccCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHHHhcccc
Q 048758 83 MRAVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFVLNTNIW 162 (777)
Q Consensus 83 ~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~~~~~~~ 162 (777)
++.+.+|+|+.++++|||+||+++||+... +++++.+++++|+++|+|+||||+++|++|+++ +..+|+.+++++..
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~ 416 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRN 416 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Confidence 878889999999999999999999997643 456789999999999999999999999999988 57899999987753
Q ss_pred ccccCccCchhhHhhcccCCCh-hhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHHHHHHHHHHHhhCc
Q 048758 163 DLREDKCDILPTLRVSYHFLPP-QLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMEDLGREFVQELHSRS 241 (777)
Q Consensus 163 ~~~~~~~~~~~~l~~sy~~L~~-~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~~L~~~s 241 (777)
. .+.++..+|++||+.|++ ..|.||+++|+||.+.+++ .+..|.+.+.+... ..++.|++++
T Consensus 417 ~---~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~~-----------~~l~~L~~ks 479 (1153)
T PLN03210 417 G---LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDVN-----------IGLKNLVDKS 479 (1153)
T ss_pred C---ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCch-----------hChHHHHhcC
Confidence 2 345799999999999987 5899999999999887554 35666666554321 2288999999
Q ss_pred ccccccCCCCcEEecHHHHHHHHHhhccce-------EEeecc--cccccccccCccceEEEEEeCcCCCC-cchhhhcc
Q 048758 242 LFQLSSKDTSRFVMHDLINDLARWAAGEQY-------FRMEDT--LAGENRQKFSQSLRHFSYIRGQYDGD-TRLEFICD 311 (777)
Q Consensus 242 Ll~~~~~~~~~~~mhd~i~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 311 (777)
|++... +++.|||++|++|++++..+. +..... ............++.+++........ .....+..
T Consensus 480 Li~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~ 556 (1153)
T PLN03210 480 LIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKG 556 (1153)
T ss_pred CEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhc
Confidence 998753 579999999999999986542 111000 00001112234556665544332221 12345778
Q ss_pred CCCccEEeeCcccCCCCchhhHHHHHHHHccC-CceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhcc
Q 048758 312 VQHLRTFLPMKLSDFGDNYLAWSALQMLLNHL-PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSL 390 (777)
Q Consensus 312 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L 390 (777)
|++|+.|.......-..+..... ++..+..+ .+||+|++.++ .+..+|..+ .+.+|+.|+++++.+..+|..+..+
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~-lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l 633 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWH-LPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSL 633 (1153)
T ss_pred CccccEEEEecccccccccceee-cCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccC
Confidence 99998886643210000111111 22224444 46999999988 789999877 5789999999999999999999999
Q ss_pred ccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcE
Q 048758 391 YNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRL 470 (777)
Q Consensus 391 ~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l 470 (777)
++|++|++++|..+..+|. ++.+++|+.|++++|..+..+|..++++++|+.|.+..+. .+..+.
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~-----------~L~~Lp--- 698 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE-----------NLEILP--- 698 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC-----------CcCccC---
Confidence 9999999999978888885 8899999999999999899999999999999988654322 111111
Q ss_pred EEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCe
Q 048758 471 KISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKL 550 (777)
Q Consensus 471 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L 550 (777)
..+ ++++|+.|.++.+.... . ++ ....+|+.|++.++.+..+|..+. +++|
T Consensus 699 ----------------~~i-~l~sL~~L~Lsgc~~L~------~-~p--~~~~nL~~L~L~~n~i~~lP~~~~---l~~L 749 (1153)
T PLN03210 699 ----------------TGI-NLKSLYRLNLSGCSRLK------S-FP--DISTNISWLDLDETAIEEFPSNLR---LENL 749 (1153)
T ss_pred ----------------CcC-CCCCCCEEeCCCCCCcc------c-cc--cccCCcCeeecCCCcccccccccc---cccc
Confidence 001 24456666665432110 0 01 113467777777777777776553 6677
Q ss_pred eEEEEeCCCCCC------CCC--CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhcccc
Q 048758 551 VQLKLEGCGKCT------SLP--SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGA 622 (777)
Q Consensus 551 ~~L~L~~~~~~~------~l~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 622 (777)
+.|.+.++.... .++ .....++|+.|++++|..+..+|..+.+ +++|+.|++++|..+..+..
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~------L~~L~~L~Ls~C~~L~~LP~--- 820 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN------LHKLEHLEIENCINLETLPT--- 820 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC------CCCCCEEECCCCCCcCeeCC---
Confidence 777766543211 011 1112345666666665555544443322 55555555555544433210
Q ss_pred CCCCCCCCCccEEEEecCCCcccccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEc
Q 048758 623 GTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQI 702 (777)
Q Consensus 623 ~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 702 (777)
. ..+++|+.|++++|..+.......++|++|+++++. +...| ..+..+++|++|++
T Consensus 821 -~--~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~--------------------i~~iP-~si~~l~~L~~L~L 876 (1153)
T PLN03210 821 -G--INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG--------------------IEEVP-WWIEKFSNLSFLDM 876 (1153)
T ss_pred -C--CCccccCEEECCCCCccccccccccccCEeECCCCC--------------------CccCh-HHHhcCCCCCEEEC
Confidence 0 124445555555554432222223344444444432 11222 12345677777777
Q ss_pred cCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCc
Q 048758 703 SRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRL 742 (777)
Q Consensus 703 ~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~l 742 (777)
++|+++..++... ..+ ++|+.|++++|.+++.+
T Consensus 877 ~~C~~L~~l~~~~------~~L-~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 877 NGCNNLQRVSLNI------SKL-KHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCcCccCccc------ccc-cCCCeeecCCCcccccc
Confidence 7777777776543 223 57777777777777654
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.6e-29 Score=303.77 Aligned_cols=400 Identities=18% Similarity=0.149 Sum_probs=224.3
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCccc-ccchhhhccccCcEEeeCCCcCccccchhccccCccc
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 418 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~ 418 (777)
+.++++|++|+|++|.....+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 444444555555444333334444444555555555544444 3444444455555555554432234444444455555
Q ss_pred EEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccc
Q 048758 419 HLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEAL 498 (777)
Q Consensus 419 ~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 498 (777)
+|++++|.....+|..+.++++|++|++..+.... .....+..++.|. .+.+.. +......+..+..+++|+.|
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~-~L~l~~----n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG-EIPELVIQLQNLE-ILHLFS----NNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeecc-CCChhHcCCCCCc-EEECCC----CccCCcCChhHhcCCCCCEE
Confidence 55554444333344444444444444433222110 0001111122221 112111 11112223334455556666
Q ss_pred eEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCC-CCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCccee
Q 048758 499 ILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGT-KFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKEL 576 (777)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L 576 (777)
.++.+. .....+..++.+++|+.|++++|.+. .+|.++. .+++|+.|++.+|.....+| .++.+++|+.|
T Consensus 338 ~L~~n~------l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 338 QLWSNK------FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC--SSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred ECcCCC------CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh--CcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 555332 11122334455566666666666552 3454444 35666777776666555555 56667777777
Q ss_pred eecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCc---ccccCCCCCc
Q 048758 577 LISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQL---LVTIQCLPAL 653 (777)
Q Consensus 577 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l---~~~~~~l~~L 653 (777)
++++|......+..+.. +++|+.|+++++.-... .+ .....+++|+.|++++|... |.. ...++|
T Consensus 410 ~L~~n~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~~-~~----~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L 477 (968)
T PLN00113 410 RLQDNSFSGELPSEFTK------LPLVYFLDISNNNLQGR-IN----SRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRL 477 (968)
T ss_pred ECcCCEeeeECChhHhc------CCCCCEEECcCCcccCc-cC----hhhccCCCCcEEECcCceeeeecCcc-cccccc
Confidence 77776544444433322 77788888877642111 11 11134778888888888632 332 245788
Q ss_pred cEEEEcCCCCcc-----cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcc
Q 048758 654 SELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRL 728 (777)
Q Consensus 654 ~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L 728 (777)
+.|++++|.... +..++.|+.|++++|......+ ..+.++++|++|+|++|.-...+|... ..+ ++|
T Consensus 478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~------~~l-~~L 549 (968)
T PLN00113 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP-DELSSCKKLVSLDLSHNQLSGQIPASF------SEM-PVL 549 (968)
T ss_pred eEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC-hHHcCccCCCEEECCCCcccccCChhH------hCc-ccC
Confidence 999999887442 3456788899998886554443 445678999999999975444555444 333 789
Q ss_pred cEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCccccCCCCCC
Q 048758 729 QFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVSFPEVALPS 773 (777)
Q Consensus 729 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~p~ 773 (777)
++|++++|+....+|..+..+++|+.|++++|+....+|..+.+.
T Consensus 550 ~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~ 594 (968)
T PLN00113 550 SQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFL 594 (968)
T ss_pred CEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhc
Confidence 999999987777899999999999999999999998999765433
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=5.8e-29 Score=298.85 Aligned_cols=397 Identities=18% Similarity=0.200 Sum_probs=210.6
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCccc-ccchhhhccccCcEEeeCCCcCccccchhccccCcccEEe
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLK 421 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~ 421 (777)
+++|++|+|++|.....+|..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 445555555554222344555555555555555555544 4455555555555555555533344555555555555555
Q ss_pred cCCcccccccCcccccccCCcccCcEEecCCC--CCCccccccccccCCcEEEccccccCCcccchhhccCcccccccce
Q 048758 422 NSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDS--GSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALI 499 (777)
Q Consensus 422 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 499 (777)
+++|.....+|..++++++|++|++..+.... +..+..+.+|+ .+.+... ......+..+..+++|+.|+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~----~L~L~~n----~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ----YLFLYQN----KLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC----EEECcCC----eeeccCchhHhhccCcCEEE
Confidence 55555334455555555555555444332211 11222222222 2222110 11112233344455555555
Q ss_pred EeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCC-CCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceee
Q 048758 500 LEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGT-KFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELL 577 (777)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~ 577 (777)
++.+. .....+..+..+++|+.|++.+|.+. .+|.++. .+++|+.|++++|.....+| .++.+++|+.|+
T Consensus 291 Ls~n~------l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 291 LSDNS------LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred CcCCe------eccCCChhHcCCCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 55331 11122233444555666666555542 3333333 35566666666655444444 455556666666
Q ss_pred ecCCCCceEeCcccccC------------------CCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEec
Q 048758 578 ISGMDGVKIVGLEFYGN------------------ICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITS 639 (777)
Q Consensus 578 L~~~~~l~~~~~~~~~~------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~ 639 (777)
+++|.....++..+... .....+++|+.|++.+|.-.... ......+++|+.|++++
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL-----PSEFTKLPLVYFLDISN 437 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC-----ChhHhcCCCCCEEECcC
Confidence 65554333332222110 00011455555555554321110 01112456677777776
Q ss_pred CC---CcccccCCCCCccEEEEcCCCCcc----cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcccc
Q 048758 640 CD---QLLVTIQCLPALSELQIDGCKRVV----FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLV 712 (777)
Q Consensus 640 c~---~l~~~~~~l~~L~~L~l~~~~~l~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 712 (777)
|. .++..+..+++|+.|++++|.... ....+.|+.|++++|...... +..+.++++|++|++++|.-...+|
T Consensus 438 N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred CcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc-ChhhhhhhccCEEECcCCcceeeCC
Confidence 64 223445567777777777776432 122367778888777554333 3445678889999999875444565
Q ss_pred ccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCccccC
Q 048758 713 TEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVSFPE 768 (777)
Q Consensus 713 ~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 768 (777)
... ..+ ++|++|+|++|.....+|..+..+++|+.|++++|+..+.+|.
T Consensus 517 ~~~------~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 517 DEL------SSC-KKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred hHH------cCc-cCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCCh
Confidence 544 233 7899999999877778899999999999999999988777875
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=9.1e-30 Score=261.31 Aligned_cols=216 Identities=34% Similarity=0.614 Sum_probs=168.4
Q ss_pred hhHHHHHHHhhcCCCCC--CCCCHHHHHHHHHHHhCCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHH
Q 048758 2 FRISKSILNSVAKDQSN--NDDDLNSLQVKLKERLSGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV 79 (777)
Q Consensus 2 ~~l~~~il~~l~~~~~~--~~~~~~~~~~~l~~~L~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v 79 (777)
.+++++|+..+...... ...+.++..+.+++.|+++++||||||||+. ..|+.+...++....||+||||||+..+
T Consensus 64 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v 141 (287)
T PF00931_consen 64 EQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSV 141 (287)
T ss_dssp HHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGG
T ss_pred ccccccccccccccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccc
Confidence 46788899999877431 3467788999999999999999999999886 5888888888887789999999999999
Q ss_pred Hhhccc-CCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHHHh
Q 048758 80 AATMRA-VSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFVLN 158 (777)
Q Consensus 80 ~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~~~ 158 (777)
+..+.. ...+++++|+.+||++||+..++... ........+.+++|++.|+|+||||+++|++|+.+.+...|+.+++
T Consensus 142 ~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~ 220 (287)
T PF00931_consen 142 AGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALE 220 (287)
T ss_dssp GTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 887764 57899999999999999999997655 1223445578999999999999999999999977656788999887
Q ss_pred ccccccc---cCccCchhhHhhcccCCChhhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCc
Q 048758 159 TNIWDLR---EDKCDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQE 220 (777)
Q Consensus 159 ~~~~~~~---~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~ 220 (777)
....... +....++.++.+||+.||++.|.||++||+||+++.|+++.++++|+++|++...
T Consensus 221 ~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 221 ELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 6543332 2346799999999999999999999999999999999999999999999998753
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.8e-21 Score=233.68 Aligned_cols=416 Identities=20% Similarity=0.211 Sum_probs=271.3
Q ss_pred HHHHHHHHCCCccCcCCCCcHHHHHHHHHHHHhhCcccccccCCCCcEEecHHHHHHHHHhhccceEE---eecc-----
Q 048758 206 EIILLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSSKDTSRFVMHDLINDLARWAAGEQYFR---MEDT----- 277 (777)
Q Consensus 206 ~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~~~~~~~~~mhd~i~~~~~~~~~~~~~~---~~~~----- 277 (777)
..+..++...+++...+.-.|||..+++.++++.....++.. ..+.+.+.-+.++.....+...+. +...
T Consensus 470 ~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~--r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 470 IGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGE--REFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred hChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCc--ceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 346678888888776666789999999988887554422222 334455544555444332222211 1100
Q ss_pred cccccccccCccceEEEEEeCcCCCCc-----chhhhccC-CCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEee
Q 048758 278 LAGENRQKFSQSLRHFSYIRGQYDGDT-----RLEFICDV-QHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSL 351 (777)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 351 (777)
.........+..++.+.+......... ....+..+ .++|.|...+. ....+|..| .+.+|++|++
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~--------~l~~lP~~f-~~~~L~~L~L 618 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY--------PLRCMPSNF-RPENLVKLQM 618 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC--------CCCCCCCcC-CccCCcEEEC
Confidence 001111223556666666443221110 01112222 23555533221 122233333 4689999999
Q ss_pred cCccCccccCccccCcCccCeeeccCCc-ccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccc
Q 048758 352 RGYCNIFNLPNEIGNLKHLRCLNLSRTR-IQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEE 430 (777)
Q Consensus 352 ~~~~~l~~lp~~i~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~ 430 (777)
++| .+..+|..+..+++|++|+|+++. +..+| .++.+++|++|++++|..+..+|..++++++|+.|++++|..++.
T Consensus 619 ~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~ 696 (1153)
T PLN03210 619 QGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI 696 (1153)
T ss_pred cCc-cccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence 998 789999999999999999999875 56776 588999999999999989999999999999999999999998999
Q ss_pred cCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccc
Q 048758 431 MPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCE 510 (777)
Q Consensus 431 ~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 510 (777)
+|..+ ++++|+.|.+.++... ..+.. ...+|+.|.+..+...
T Consensus 697 Lp~~i-~l~sL~~L~Lsgc~~L--------~~~p~-------------------------~~~nL~~L~L~~n~i~---- 738 (1153)
T PLN03210 697 LPTGI-NLKSLYRLNLSGCSRL--------KSFPD-------------------------ISTNISWLDLDETAIE---- 738 (1153)
T ss_pred cCCcC-CCCCCCEEeCCCCCCc--------ccccc-------------------------ccCCcCeeecCCCccc----
Confidence 99876 6788888755433211 00000 0124444444432110
Q ss_pred hHHHhcccCCCCCCCCeEEEeecCCCCCC-------cccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeecCCC
Q 048758 511 FETQVLSMLKPHRDVQELTITGYSGTKFP-------IWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLISGMD 582 (777)
Q Consensus 511 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-------~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~ 582 (777)
.++....+++|++|.+.++....+. .... ..+++|+.|+|++|..+..+| +++++++|+.|++++|.
T Consensus 739 ----~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~-~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 739 ----EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT-MLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ----cccccccccccccccccccchhhccccccccchhhh-hccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 0111113455666666553322211 1111 135789999999998888888 78899999999999998
Q ss_pred CceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--CcccccCCCCCccEEEEcC
Q 048758 583 GVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QLLVTIQCLPALSELQIDG 660 (777)
Q Consensus 583 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~ 660 (777)
.++.+|... .+++|+.|++++|..+.. +|...++|+.|+++++. .+|..+..+++|++|++++
T Consensus 814 ~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~--------~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 814 NLETLPTGI-------NLESLESLDLSGCSRLRT--------FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CcCeeCCCC-------CccccCEEECCCCCcccc--------ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence 888776543 288999999999977654 34446789999999884 5677888999999999999
Q ss_pred CCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcccc
Q 048758 661 CKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLV 712 (777)
Q Consensus 661 ~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 712 (777)
|+.+.. ++. ....+++|+.|++++|++|..++
T Consensus 879 C~~L~~-------------------l~~-~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 879 CNNLQR-------------------VSL-NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCcCc-------------------cCc-ccccccCCCeeecCCCccccccc
Confidence 986642 111 23467899999999999998664
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-22 Score=205.59 Aligned_cols=351 Identities=19% Similarity=0.208 Sum_probs=223.0
Q ss_pred CCCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcC
Q 048758 325 DFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWK 403 (777)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~ 403 (777)
+++.|.++.- ...+|.++++|+.+++..| .+..+|...+...||+.|+|.+|.|.++- .+++.++.|++|||+.| .
T Consensus 84 dlsnNkl~~i-d~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~ 160 (873)
T KOG4194|consen 84 DLSNNKLSHI-DFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-L 160 (873)
T ss_pred eccccccccC-cHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-h
Confidence 5555655433 3345788999999999988 88889987777788999999999888664 46788899999999998 7
Q ss_pred ccccchh-ccccCcccEEecCCcccccccCcc-cccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCc
Q 048758 404 LKKLCKD-MGNLTKLRHLKNSNVHSLEEMPKG-FGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDV 481 (777)
Q Consensus 404 l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~ 481 (777)
+.++|.. +..-.++++|++++|+ ++.+-.+ |..+.+|.+|.+..+..
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNri------------------------------ 209 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRI------------------------------ 209 (873)
T ss_pred hhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcc------------------------------
Confidence 8877753 5556789999999988 6665433 66666666664433321
Q ss_pred ccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCC
Q 048758 482 GDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKC 561 (777)
Q Consensus 482 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 561 (777)
.......+++++.|+.|++..+ .+.......+..+++|+.|.+..|.+.++-+...- .+.++++|+|..|...
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN------~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRN------RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQ 282 (873)
T ss_pred cccCHHHhhhcchhhhhhcccc------ceeeehhhhhcCchhhhhhhhhhcCcccccCccee-eecccceeecccchhh
Confidence 1122334566777888877754 22223345677888999999999998777654332 4889999999998743
Q ss_pred CC-CCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecC
Q 048758 562 TS-LPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSC 640 (777)
Q Consensus 562 ~~-l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c 640 (777)
.- -.|+..+..|++|+|+.|. +..+..+.+.. .++|+.|+|+++.- . ...
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~Wsf-----tqkL~~LdLs~N~i-~----~l~------------------ 333 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSF-----TQKLKELDLSSNRI-T----RLD------------------ 333 (873)
T ss_pred hhhcccccccchhhhhccchhh-hheeecchhhh-----cccceeEecccccc-c----cCC------------------
Confidence 32 2278889999999999864 33333222221 56777777766531 0 000
Q ss_pred CCcccccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCccccc--cccCCCCCCCCCeEEccCCCCCccccc
Q 048758 641 DQLLVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRS--ETRLPQDIRSLNRLQISRCPQLLSLVT 713 (777)
Q Consensus 641 ~~l~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~l~~ 713 (777)
+..+..+..|++|.++.|..-. +.++.+|+.|++++|...+.. ....|..+++|++|.+.| +++++++.
T Consensus 334 ---~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k 409 (873)
T KOG4194|consen 334 ---EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK 409 (873)
T ss_pred ---hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch
Confidence 1233344455555555544221 334455555555555443322 223456677777777777 47777765
Q ss_pred cccccCCCCCcCCcccEEeeecCCCCCCc-hhhcCCCCCccEEEe
Q 048758 714 EEEHDQQQPELPCRLQFLELRNCEGLTRL-PQALLTLSSLTEMRI 757 (777)
Q Consensus 714 ~~~~~~~~~~l~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l 757 (777)
.- +..+ ++|++|+|.+ +-+.+| |+.+..+ .|++|.+
T Consensus 410 rA-----fsgl-~~LE~LdL~~-NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 410 RA-----FSGL-EALEHLDLGD-NAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hh-----hccC-cccceecCCC-Ccceeecccccccc-hhhhhhh
Confidence 43 2233 6777777777 345444 4455544 5555544
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=8.5e-24 Score=205.13 Aligned_cols=391 Identities=21% Similarity=0.257 Sum_probs=228.8
Q ss_pred HHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccC
Q 048758 336 LQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLT 415 (777)
Q Consensus 336 ~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~ 415 (777)
.|..++.+..++.|+.+.| .+..+|+.++++..|+.|+.+++.+.++|++++.+..|+.|+..+| .+..+|.+++++.
T Consensus 83 lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~ 160 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLS 160 (565)
T ss_pred CCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHH
Confidence 4444566666666666666 5666666666666777777776666666667776666666666666 6666666666666
Q ss_pred cccEEecCCcccccccCcccccccCCcccCcEEecCCC-CCCccccccccccCCcEEEccccccCCcccchhhccCcccc
Q 048758 416 KLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDS-GSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVN 494 (777)
Q Consensus 416 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~ 494 (777)
+|..+++.+|. +..+|+..-+++.|++|+...+.-.. +..+.++.++..|. +.-.++ .+...+..|..
T Consensus 161 ~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly--L~~Nki--------~~lPef~gcs~ 229 (565)
T KOG0472|consen 161 KLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY--LRRNKI--------RFLPEFPGCSL 229 (565)
T ss_pred HHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH--hhhccc--------ccCCCCCccHH
Confidence 77777776666 56666555456666666543332211 22223333322221 111111 11124566667
Q ss_pred cccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCc
Q 048758 495 LEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFL 573 (777)
Q Consensus 495 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L 573 (777)
|+.+++..+ .+..........++++..|++..|+..++|+.+. -+++|++|++++|.. +.+| .+|++ .|
T Consensus 230 L~Elh~g~N------~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~i-s~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 230 LKELHVGEN------QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDI-SSLPYSLGNL-HL 299 (565)
T ss_pred HHHHHhccc------HHHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCcc-ccCCcccccc-ee
Confidence 777776633 2222222334478899999999999999999887 488999999999874 4555 89999 99
Q ss_pred ceeeecCCCCceEeCccccc-----------------------C-------CCCCCCC------CCceeeccCcc--chh
Q 048758 574 KELLISGMDGVKIVGLEFYG-----------------------N-------ICSVPFP------SLEALSFSDMT--EWE 615 (777)
Q Consensus 574 ~~L~L~~~~~l~~~~~~~~~-----------------------~-------~~~~~~~------~L~~L~l~~~~--~l~ 615 (777)
+.|.+.|++.-+ +..+... . ....+|| +.+.|.+++-. .+.
T Consensus 300 ~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VP 378 (565)
T KOG0472|consen 300 KFLALEGNPLRT-IRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVP 378 (565)
T ss_pred eehhhcCCchHH-HHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCC
Confidence 999999986321 1100000 0 0111222 23444444321 000
Q ss_pred h-hhccccCCCCCCCCCccEEEEecCC--------------------------CcccccCCCCCccEEEEcCCC----Cc
Q 048758 616 E-WIPCGAGTLPRRLLLLETLDITSCD--------------------------QLLVTIQCLPALSELQIDGCK----RV 664 (777)
Q Consensus 616 ~-~~~~~~~~~~~~l~~L~~L~l~~c~--------------------------~l~~~~~~l~~L~~L~l~~~~----~l 664 (777)
+ .|... .-.-.+.++++.+. ..|..+..+++|..|++++|. ..
T Consensus 379 dEVfea~------~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~ 452 (565)
T KOG0472|consen 379 DEVFEAA------KSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE 452 (565)
T ss_pred HHHHHHh------hhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch
Confidence 0 00000 00012223333321 113445667888888888875 22
Q ss_pred ccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchh
Q 048758 665 VFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQ 744 (777)
Q Consensus 665 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~ 744 (777)
++..+..|++|+++.|.. ...|. ....+-.|+++-.++ +++.+++... ...+ .+|.+||+.+ +.+..+|.
T Consensus 453 e~~~lv~Lq~LnlS~NrF-r~lP~-~~y~lq~lEtllas~-nqi~~vd~~~-----l~nm-~nL~tLDL~n-Ndlq~IPp 522 (565)
T KOG0472|consen 453 EMGSLVRLQTLNLSFNRF-RMLPE-CLYELQTLETLLASN-NQIGSVDPSG-----LKNM-RNLTTLDLQN-NDLQQIPP 522 (565)
T ss_pred hhhhhhhhheeccccccc-ccchH-HHhhHHHHHHHHhcc-ccccccChHH-----hhhh-hhcceeccCC-CchhhCCh
Confidence 245556677887777632 22221 112223344444444 5787877652 1223 7899999988 78999999
Q ss_pred hcCCCCCccEEEecCCCCCccccC
Q 048758 745 ALLTLSSLTEMRIYGCTSLVSFPE 768 (777)
Q Consensus 745 ~~~~l~~L~~L~l~~c~~l~~lp~ 768 (777)
.++++++|++|+++|+|.= .|.
T Consensus 523 ~LgnmtnL~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR--QPR 544 (565)
T ss_pred hhccccceeEEEecCCccC--CCH
Confidence 9999999999999998873 554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=8.9e-22 Score=199.84 Aligned_cols=340 Identities=19% Similarity=0.207 Sum_probs=243.3
Q ss_pred ceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccc-hhccccCcccEEec
Q 048758 345 RLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRHLKN 422 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L~l 422 (777)
.-+.|++++| .+..+ +..|.++++|+.+++.+|.++.+|.......+|+.|+|.+| .+..+- +.+..++.|+.||+
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeecccc-ccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhh
Confidence 4577999988 66664 45578999999999999999999988888888999999998 555553 45788889999999
Q ss_pred CCcccccccCcc-cccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEe
Q 048758 423 SNVHSLEEMPKG-FGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILE 501 (777)
Q Consensus 423 ~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 501 (777)
+.|. +..+|.. +..-.++++| ++.
T Consensus 157 SrN~-is~i~~~sfp~~~ni~~L------------------------------------------------------~La 181 (873)
T KOG4194|consen 157 SRNL-ISEIPKPSFPAKVNIKKL------------------------------------------------------NLA 181 (873)
T ss_pred hhch-hhcccCCCCCCCCCceEE------------------------------------------------------eec
Confidence 9887 6666542 3333344444 333
Q ss_pred eccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCC--CCCCCCCCcceeeec
Q 048758 502 WSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSL--PSVGQLPFLKELLIS 579 (777)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l--~~~~~l~~L~~L~L~ 579 (777)
++. +.......+..+.+|..|.++.|.++.+|..... .+++|+.|+|..|.. ..+ -.+..+++|+.|.+.
T Consensus 182 ~N~------It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 182 SNR------ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred ccc------ccccccccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccce-eeehhhhhcCchhhhhhhhh
Confidence 221 1111223455566889999999999999876553 589999999998863 333 367889999999999
Q ss_pred CCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--Cc-ccccCCCCCccEE
Q 048758 580 GMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QL-LVTIQCLPALSEL 656 (777)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l-~~~~~~l~~L~~L 656 (777)
.|..-+.-...|++ +.+++.|+|+.+.- .. ....-.-++.+|+.|+++++. .+ +..+...++|++|
T Consensus 254 rN~I~kL~DG~Fy~------l~kme~l~L~~N~l-~~----vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 254 RNDISKLDDGAFYG------LEKMEHLNLETNRL-QA----VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred hcCcccccCcceee------ecccceeecccchh-hh----hhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 87655555555665 88999999987641 11 111122358899999999985 22 5677788999999
Q ss_pred EEcCCCCcc-----cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccc-cccccccCCCCCcCCcccE
Q 048758 657 QIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSL-VTEEEHDQQQPELPCRLQF 730 (777)
Q Consensus 657 ~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~~~~~~~l~~~L~~ 730 (777)
++++|..-. +..+..|+.|++++|. +..+-...|..+++|++|+++++ .+... .+... .+..+ ++|+.
T Consensus 323 dLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~---~f~gl-~~Lrk 396 (873)
T KOG4194|consen 323 DLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAV---AFNGL-PSLRK 396 (873)
T ss_pred eccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchh---hhccc-hhhhh
Confidence 999997444 4456888999998865 45555667888999999999884 33321 11111 12334 79999
Q ss_pred EeeecCCCCCCch-hhcCCCCCccEEEecCCCCCccccC
Q 048758 731 LELRNCEGLTRLP-QALLTLSSLTEMRIYGCTSLVSFPE 768 (777)
Q Consensus 731 L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~ 768 (777)
|++.+ +++++|| ..+..+++|++|++.++ .|.+|-.
T Consensus 397 L~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~ 433 (873)
T KOG4194|consen 397 LRLTG-NQLKSIPKRAFSGLEALEHLDLGDN-AIASIQP 433 (873)
T ss_pred eeecC-ceeeecchhhhccCcccceecCCCC-cceeecc
Confidence 99999 7999998 46789999999999875 4555533
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=3.2e-22 Score=204.31 Aligned_cols=302 Identities=22% Similarity=0.236 Sum_probs=138.1
Q ss_pred HccCCceeEEeecCccCccc--cCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchh-ccccCc
Q 048758 340 LNHLPRLRVFSLRGYCNIFN--LPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKD-MGNLTK 416 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~ 416 (777)
++.++.||.+.+..| +++. +|..|..+..|.+|||++|++.+.|..+.+-+++-+|+|++| ++..+|.. +-+|+.
T Consensus 74 Ls~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTD 151 (1255)
T ss_pred hccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHh
Confidence 344444444444444 2322 444444444455555555555444544444444445555544 44444433 334444
Q ss_pred ccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccc
Q 048758 417 LRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLE 496 (777)
Q Consensus 417 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 496 (777)
|-.||+++|+ ++.+|+.+..|..|++|.+.++.- ..+....+..+++|+
T Consensus 152 LLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL------------------------------~hfQLrQLPsmtsL~ 200 (1255)
T KOG0444|consen 152 LLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPL------------------------------NHFQLRQLPSMTSLS 200 (1255)
T ss_pred Hhhhccccch-hhhcCHHHHHHhhhhhhhcCCChh------------------------------hHHHHhcCccchhhh
Confidence 4445554444 444444444444444443322210 001111122333444
Q ss_pred cceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcce
Q 048758 497 ALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKE 575 (777)
Q Consensus 497 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~ 575 (777)
.|.++... ......+.++..+.+|..++++.|+...+|..+. .+++|++|+|++|... .+. ..+...+|+.
T Consensus 201 vLhms~Tq-----RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly--~l~~LrrLNLS~N~it-eL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 201 VLHMSNTQ-----RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLY--KLRNLRRLNLSGNKIT-ELNMTEGEWENLET 272 (1255)
T ss_pred hhhccccc-----chhhcCCCchhhhhhhhhccccccCCCcchHHHh--hhhhhheeccCcCcee-eeeccHHHHhhhhh
Confidence 44444221 1222334445555555566666665555555554 3555666666655422 222 3334445555
Q ss_pred eeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCcccccCCCCCccE
Q 048758 576 LLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQLLVTIQCLPALSE 655 (777)
Q Consensus 576 L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~L~~ 655 (777)
|+++.| .++.+|..... +++|++|.+.++.- . . .-+|++++.+.+|+.
T Consensus 273 LNlSrN-QLt~LP~avcK------L~kL~kLy~n~NkL-~------F------------------eGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 273 LNLSRN-QLTVLPDAVCK------LTKLTKLYANNNKL-T------F------------------EGIPSGIGKLIQLEV 320 (1255)
T ss_pred hccccc-hhccchHHHhh------hHHHHHHHhccCcc-c------c------------------cCCccchhhhhhhHH
Confidence 555543 23333332222 34444444333210 0 0 123556666666666
Q ss_pred EEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeec
Q 048758 656 LQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRN 735 (777)
Q Consensus 656 L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~ 735 (777)
+...+|. +.-.|.+ ..-+..|+.|.++. +.|..+|..+.. .+.|+.|+++.
T Consensus 321 f~aanN~--------------------LElVPEg-lcRC~kL~kL~L~~-NrLiTLPeaIHl-------L~~l~vLDlre 371 (1255)
T KOG0444|consen 321 FHAANNK--------------------LELVPEG-LCRCVKLQKLKLDH-NRLITLPEAIHL-------LPDLKVLDLRE 371 (1255)
T ss_pred HHhhccc--------------------cccCchh-hhhhHHHHHhcccc-cceeechhhhhh-------cCCcceeeccC
Confidence 6555542 1112222 22345666666654 456666665522 26677777777
Q ss_pred CCCCCCch
Q 048758 736 CEGLTRLP 743 (777)
Q Consensus 736 c~~l~~lp 743 (777)
++++.-.|
T Consensus 372 NpnLVMPP 379 (1255)
T KOG0444|consen 372 NPNLVMPP 379 (1255)
T ss_pred CcCccCCC
Confidence 77776555
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.4e-22 Score=205.21 Aligned_cols=358 Identities=19% Similarity=0.237 Sum_probs=224.4
Q ss_pred CCCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCc
Q 048758 325 DFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKL 404 (777)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l 404 (777)
|++.|.++...+|.....|+.++.|.|... .+..+|+.++.+.+|+.|.+.+|++..+...++.|+.|+.++++.| ++
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N-~L 90 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN-NL 90 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc-cc
Confidence 667777777777777888888888888876 7888888888888888888888888888888888888888888887 44
Q ss_pred --cccchhccccCcccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcc
Q 048758 405 --KKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVG 482 (777)
Q Consensus 405 --~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~ 482 (777)
..+|..+..|..|..||+++|+ +++.|.++...+++-.|.++.+.+.+... +-+-+|+.|- .+.++ .+.-
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn-~lfinLtDLL-fLDLS-----~NrL 162 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPN-SLFINLTDLL-FLDLS-----NNRL 162 (1255)
T ss_pred ccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCc-hHHHhhHhHh-hhccc-----cchh
Confidence 5778888888888888888888 88888888888887777666554433211 0111111111 11110 0111
Q ss_pred cchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCC--CCCCcccCCCCCCCeeEEEEeCCCC
Q 048758 483 DASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSG--TKFPIWLGDSSFSKLVQLKLEGCGK 560 (777)
Q Consensus 483 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~p~~~~~~~l~~L~~L~L~~~~~ 560 (777)
+..+..+..+.+|+.|.++.++ ..-..+..+..+.+|+.|++++.+. ..+|.
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls~NP------L~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt-------------------- 216 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLSNNP------LNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT-------------------- 216 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcCCCh------hhHHHHhcCccchhhhhhhcccccchhhcCCC--------------------
Confidence 1122223333444444444332 1111222222333344444444332 23343
Q ss_pred CCCCCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecC
Q 048758 561 CTSLPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSC 640 (777)
Q Consensus 561 ~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c 640 (777)
++..+.+|..++++.| .+..+|.-.+. +++|+.|+++++.- +.+ ...-....+|+.|+++.+
T Consensus 217 -----sld~l~NL~dvDlS~N-~Lp~vPecly~------l~~LrrLNLS~N~i-teL-----~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 217 -----SLDDLHNLRDVDLSEN-NLPIVPECLYK------LRNLRRLNLSGNKI-TEL-----NMTEGEWENLETLNLSRN 278 (1255)
T ss_pred -----chhhhhhhhhcccccc-CCCcchHHHhh------hhhhheeccCcCce-eee-----eccHHHHhhhhhhccccc
Confidence 4444455555555432 23333332222 45555555554321 000 000012346777777777
Q ss_pred C--CcccccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcccccccccc
Q 048758 641 D--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHD 718 (777)
Q Consensus 641 ~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~ 718 (777)
. .+|..+..++.|+.|++.+|. +.+.+.+ +..+.+.+|+.+...+ ++|.-+|++.
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiP------------------SGIGKL~~Levf~aan-N~LElVPEgl--- 335 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNK-LTFEGIP------------------SGIGKLIQLEVFHAAN-NKLELVPEGL--- 335 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCc-ccccCCc------------------cchhhhhhhHHHHhhc-cccccCchhh---
Confidence 4 568889999999999988764 4433322 3345678888888888 5788888765
Q ss_pred CCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCc
Q 048758 719 QQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLV 764 (777)
Q Consensus 719 ~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~ 764 (777)
.. +..|+.|.++. +.+-.+|+.+.-++-|+.|++.++|+|.
T Consensus 336 ---cR-C~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 336 ---CR-CVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred ---hh-hHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 22 27899999976 6788899999999999999999999986
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=5.1e-22 Score=212.54 Aligned_cols=238 Identities=23% Similarity=0.311 Sum_probs=138.0
Q ss_pred HHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccC
Q 048758 336 LQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLT 415 (777)
Q Consensus 336 ~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~ 415 (777)
+|..+..+.+|+.|+++.| .+..+|.++.++.+|++|.|.+|.+..+|.++..+++|++||+++| ....+|..+..++
T Consensus 60 fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt 137 (1081)
T KOG0618|consen 60 FPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLT 137 (1081)
T ss_pred CCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh-ccCCCchhHHhhh
Confidence 4444566677777777776 6777777777777777777777777777777777777777777777 6667777677777
Q ss_pred cccEEecCCcccccccCcccccccCCcccCcE--EecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCccc
Q 048758 416 KLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRF--VVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKV 493 (777)
Q Consensus 416 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~--~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 493 (777)
.+..++.++|..+..++... ++.+++. ..+..-...+..+.+ ++ .+.-... ....+..+.
T Consensus 138 ~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~i~~l~~--~l--dLr~N~~---------~~~dls~~~ 199 (1081)
T KOG0618|consen 138 AEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLIDIYNLTH--QL--DLRYNEM---------EVLDLSNLA 199 (1081)
T ss_pred HHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcchhhhhe--ee--ecccchh---------hhhhhhhcc
Confidence 77777777664333333211 2222111 111100111111111 00 0000000 011122222
Q ss_pred c--------------------cccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEE
Q 048758 494 N--------------------LEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQL 553 (777)
Q Consensus 494 ~--------------------L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L 553 (777)
+ ++.|....+. .. .......+.+|+.++++.+++..+|.|+. .+.+|+.|
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~------l~--~~~~~p~p~nl~~~dis~n~l~~lp~wi~--~~~nle~l 269 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNP------LT--TLDVHPVPLNLQYLDISHNNLSNLPEWIG--ACANLEAL 269 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCc------ce--eeccccccccceeeecchhhhhcchHHHH--hcccceEe
Confidence 2 2222222211 11 11122335689999999999999999998 59999999
Q ss_pred EEeCCCCCCCCC-CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCc
Q 048758 554 KLEGCGKCTSLP-SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDM 611 (777)
Q Consensus 554 ~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 611 (777)
+..+|.. +.+| .+....+|+.|.+..| .++.++....+ +.+|++|++..+
T Consensus 270 ~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~------~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 270 NANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEG------LKSLRTLDLQSN 320 (1081)
T ss_pred cccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccc------cceeeeeeehhc
Confidence 9998875 4455 5666777888877765 35555443222 677777777754
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=8.1e-20 Score=177.71 Aligned_cols=373 Identities=21% Similarity=0.219 Sum_probs=269.3
Q ss_pred HHHHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhcc
Q 048758 333 WSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMG 412 (777)
Q Consensus 333 ~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~ 412 (777)
...+|..+..+.+|+.|+.++| .+..+|++|+.+..|..|+..+|+++.+|..+.++.+|..|++.+| +++.+|+..-
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i 180 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHI 180 (565)
T ss_pred HhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHH
Confidence 3455666788899999999998 8889999999999999999999999999999999999999999999 8888888766
Q ss_pred ccCcccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcc
Q 048758 413 NLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNK 492 (777)
Q Consensus 413 ~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 492 (777)
+|+.|++||...|- ++.+|++++.+.+|..|++..+.......+.+++.++.+. +.... +.-...+..+++
T Consensus 181 ~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh--~g~N~------i~~lpae~~~~L 251 (565)
T KOG0472|consen 181 AMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELH--VGENQ------IEMLPAEHLKHL 251 (565)
T ss_pred HHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHH--hcccH------HHhhHHHHhccc
Confidence 79999999999988 9999999999999999988888777666777777777663 11111 111223445678
Q ss_pred cccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCC---------
Q 048758 493 VNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTS--------- 563 (777)
Q Consensus 493 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~--------- 563 (777)
+++..|++..+. ....+..++.+.+|+.|++++|.++.+|...+ ++ .|+.|-+.||+.-+.
T Consensus 252 ~~l~vLDLRdNk-------lke~Pde~clLrsL~rLDlSNN~is~Lp~sLg--nl-hL~~L~leGNPlrTiRr~ii~~gT 321 (565)
T KOG0472|consen 252 NSLLVLDLRDNK-------LKEVPDEICLLRSLERLDLSNNDISSLPYSLG--NL-HLKFLALEGNPLRTIRREIISKGT 321 (565)
T ss_pred ccceeeeccccc-------cccCchHHHHhhhhhhhcccCCccccCCcccc--cc-eeeehhhcCCchHHHHHHHHcccH
Confidence 888999987542 23455667778999999999999999998887 56 889998888653110
Q ss_pred ---------------------------------CCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccC
Q 048758 564 ---------------------------------LPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSD 610 (777)
Q Consensus 564 ---------------------------------l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 610 (777)
+|....+.+.+.|++++ ..++.+|.+.+..... --....+++.
T Consensus 322 ~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~---~~Vt~Vnfsk 397 (565)
T KOG0472|consen 322 QEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKS---EIVTSVNFSK 397 (565)
T ss_pred HHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhh---cceEEEeccc
Confidence 11122345567777776 3456666554432110 0022223332
Q ss_pred cc---------chhhhh---------ccccCCCCCCCCCccEEEEecCC--CcccccCCCCCccEEEEcCCCCcccC---
Q 048758 611 MT---------EWEEWI---------PCGAGTLPRRLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFS--- 667 (777)
Q Consensus 611 ~~---------~l~~~~---------~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~~~~l~~~--- 667 (777)
++ .+.+.. ..+.+..-..+++|..|+++++. .+|..++.+..|+.|+++.|..-...
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~ 477 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECL 477 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHH
Confidence 11 111110 01112223468899999999984 78989999999999999999522211
Q ss_pred -CCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCC
Q 048758 668 -SPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLT 740 (777)
Q Consensus 668 -~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~ 740 (777)
.+..++++ +..++.+...+.+..+++.+|.+|++.+ +.++++|...++ + .+|++|.++++| ++
T Consensus 478 y~lq~lEtl-las~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgn------m-tnL~hLeL~gNp-fr 541 (565)
T KOG0472|consen 478 YELQTLETL-LASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGN------M-TNLRHLELDGNP-FR 541 (565)
T ss_pred hhHHHHHHH-HhccccccccChHHhhhhhhcceeccCC-CchhhCChhhcc------c-cceeEEEecCCc-cC
Confidence 12344444 3444556667777778999999999999 589999987743 4 899999999965 44
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=2e-19 Score=192.96 Aligned_cols=383 Identities=23% Similarity=0.246 Sum_probs=244.2
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
..+.-.|+.|++++| .+..+|..|..+.+|+.|+++.|.|...|.+++++.+|++|.|.+| .+..+|.++..+++|++
T Consensus 41 ~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQY 118 (1081)
T ss_pred hhheeeeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccc
Confidence 444455999999987 8999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred EecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccce
Q 048758 420 LKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALI 499 (777)
Q Consensus 420 L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 499 (777)
|++++|. ...+|.-+..++.+..+...++-... .+.... .+++ .+.. +.....+...+.++.. .++
T Consensus 119 LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~--~lg~~~-ik~~--~l~~------n~l~~~~~~~i~~l~~--~ld 184 (1081)
T KOG0618|consen 119 LDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQ--RLGQTS-IKKL--DLRL------NVLGGSFLIDIYNLTH--QLD 184 (1081)
T ss_pred cccchhc-cCCCchhHHhhhHHHHHhhhcchhhh--hhcccc-chhh--hhhh------hhcccchhcchhhhhe--eee
Confidence 9999999 78888888888877777554441111 111111 1111 1111 1222233333334333 356
Q ss_pred EeeccCCCccchHHHhcccCCCC--------------------CCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCC
Q 048758 500 LEWSARSERCEFETQVLSMLKPH--------------------RDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCG 559 (777)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~--------------------~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~ 559 (777)
+.++..+ ...+..+ ++|+.|+...|..... .....-.+|+.++++.+.
T Consensus 185 Lr~N~~~---------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~---~~~p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 185 LRYNEME---------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTL---DVHPVPLNLQYLDISHNN 252 (1081)
T ss_pred cccchhh---------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceee---ccccccccceeeecchhh
Confidence 6544321 1112222 2333444443433211 111124456677776665
Q ss_pred CCCCCC-CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEe
Q 048758 560 KCTSLP-SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDIT 638 (777)
Q Consensus 560 ~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~ 638 (777)
+..+| |++.+++|+.+....+. +..++.+.+. ..+|+.|.+..|. +.. ...++..+.+|++|++.
T Consensus 253 -l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~------~~~L~~l~~~~ne-l~y-----ip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 253 -LSNLPEWIGACANLEALNANHNR-LVALPLRISR------ITSLVSLSAAYNE-LEY-----IPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred -hhcchHHHHhcccceEecccchh-HHhhHHHHhh------hhhHHHHHhhhhh-hhh-----CCCcccccceeeeeeeh
Confidence 33444 66667777777776653 2333333322 4555655555442 111 12334557889999988
Q ss_pred cCC--Ccccc------------------c--------CCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCcccc
Q 048758 639 SCD--QLLVT------------------I--------QCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWR 685 (777)
Q Consensus 639 ~c~--~l~~~------------------~--------~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~ 685 (777)
.+. .+|.. + ...+.|+.|++.+|.--. +.+...|+.|++++| ++..
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~ 397 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNS 397 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-cccc
Confidence 774 22210 0 123456666666654111 345577888888775 4566
Q ss_pred ccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCcc
Q 048758 686 SETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVS 765 (777)
Q Consensus 686 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~ 765 (777)
+|.+.+.++..|+.|+++| +.|+.+|+..- .+ ..|++|..++ +.+.++| .+..+++|+.+|++ |+.|..
T Consensus 398 fpas~~~kle~LeeL~LSG-NkL~~Lp~tva------~~-~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS-~N~L~~ 466 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSG-NKLTTLPDTVA------NL-GRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLS-CNNLSE 466 (1081)
T ss_pred CCHHHHhchHHhHHHhccc-chhhhhhHHHH------hh-hhhHHHhhcC-Cceeech-hhhhcCcceEEecc-cchhhh
Confidence 7777788889999999999 58888887662 22 7899999888 6888888 67889999999997 777765
Q ss_pred ccC-CCCC-CCCC
Q 048758 766 FPE-VALP-SQLR 776 (777)
Q Consensus 766 lp~-~~~p-~~l~ 776 (777)
+-- ..+| +.||
T Consensus 467 ~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 467 VTLPEALPSPNLK 479 (1081)
T ss_pred hhhhhhCCCcccc
Confidence 522 1255 4554
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.59 E-value=1.8e-14 Score=160.52 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=61.6
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
..-.+|+++.+ .+..+|..+. .+|+.|++.+|.++.+|.. +++|++|++++| .++.+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeecc
Confidence 34678899988 7888998775 4899999999999988853 578899999988 77778753 4678888888
Q ss_pred CcccccccCc
Q 048758 424 NVHSLEEMPK 433 (777)
Q Consensus 424 ~~~~~~~~p~ 433 (777)
+|. +..+|.
T Consensus 271 ~N~-L~~Lp~ 279 (788)
T PRK15387 271 SNP-LTHLPA 279 (788)
T ss_pred CCc-hhhhhh
Confidence 877 666654
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.5e-13 Score=154.46 Aligned_cols=83 Identities=17% Similarity=0.320 Sum_probs=65.0
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
.+...|+++++ .+..+|..+. .+|+.|++++|.++.+|..+. .+|++|++++| .++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 45788999887 7888887664 579999999999999988765 58999999988 7788887553 478888888
Q ss_pred CcccccccCccc
Q 048758 424 NVHSLEEMPKGF 435 (777)
Q Consensus 424 ~~~~~~~~p~~~ 435 (777)
+|. +..+|..+
T Consensus 250 ~N~-L~~LP~~l 260 (754)
T PRK15370 250 INR-ITELPERL 260 (754)
T ss_pred CCc-cCcCChhH
Confidence 887 66666543
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=6.3e-13 Score=148.33 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=63.3
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
++|+.|++.+| .++.+|.. +++|++|++++|.++.+|.. ..+|+.|++++| .+..+|.. .++|+.|+++
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls 290 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN-PLTHLPAL---PSGLCKLWIF 290 (788)
T ss_pred cCCCEEEccCC-cCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC-chhhhhhc---hhhcCEEECc
Confidence 37899999988 78888863 68899999999999999864 468899999999 67888763 3578889999
Q ss_pred CcccccccCc
Q 048758 424 NVHSLEEMPK 433 (777)
Q Consensus 424 ~~~~~~~~p~ 433 (777)
+|. +..+|.
T Consensus 291 ~N~-Lt~LP~ 299 (788)
T PRK15387 291 GNQ-LTSLPV 299 (788)
T ss_pred CCc-cccccc
Confidence 887 666664
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.44 E-value=5.4e-14 Score=160.36 Aligned_cols=108 Identities=31% Similarity=0.390 Sum_probs=90.4
Q ss_pred cCCceeEEeecCccC-ccccCcc-ccCcCccCeeeccCCc-ccccchhhhccccCcEEeeCCCcCccccchhccccCccc
Q 048758 342 HLPRLRVFSLRGYCN-IFNLPNE-IGNLKHLRCLNLSRTR-IQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 418 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~-l~~lp~~-i~~l~~L~~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~ 418 (777)
..+.|++|-+.+|.. +..++.. |..++.|++|||++|. +.++|..|+.|.+||+|+++++ .+..+|.++++|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 345799999998853 5556554 6789999999999774 6799999999999999999999 8999999999999999
Q ss_pred EEecCCcccccccCcccccccCCcccCcEEec
Q 048758 419 HLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVG 450 (777)
Q Consensus 419 ~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~ 450 (777)
+|++..+..+..+|.....|++|++|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 99999988777776666779999999776554
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=2.5e-14 Score=139.80 Aligned_cols=382 Identities=18% Similarity=0.218 Sum_probs=204.9
Q ss_pred ceeEEeecCccCccccC-ccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccchh-ccccCcccEEe
Q 048758 345 RLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLK 421 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~ 421 (777)
.-..++|..| .++.+| .+|+.+++||.|||++|.|+.| |..|..|..|..|-+.++.+++++|.+ |++|..|+.|.
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3466777777 777776 4567888888888888888855 667888888888877775588888865 77888888888
Q ss_pred cCCcccccccCc-ccccccCCcccCcEEecCCC--CCCccccccccccCCcEE--Ecc--ccccCCcccchhhccCcccc
Q 048758 422 NSNVHSLEEMPK-GFGKLTSLLTLGRFVVGKDS--GSGLRQLKSLAHLQGRLK--ISK--LENVKDVGDASEAQLNNKVN 494 (777)
Q Consensus 422 l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L~~~l~--i~~--l~~~~~~~~~~~~~l~~~~~ 494 (777)
+.-|+ +..++. .+..++++..|.++.+.... ...+..+..++.+..... +.. +....+.....+...+....
T Consensus 147 lNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 87777 555543 37777777777766654333 223334444433320000 000 00000000000000111111
Q ss_pred cccceEeeccCCCccchHHHhcccCCCCCCCCeE----EEeecCCCCCCcc-cCCCCCCCeeEEEEeCCCCCCCCC-CCC
Q 048758 495 LEALILEWSARSERCEFETQVLSMLKPHRDVQEL----TITGYSGTKFPIW-LGDSSFSKLVQLKLEGCGKCTSLP-SVG 568 (777)
Q Consensus 495 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L----~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~~~ 568 (777)
.....+.+.. ........+ ..+++.+ ....+.....|.. +. .+++|++|+|++|.....-+ ++.
T Consensus 226 ~~p~rl~~~R------i~q~~a~kf--~c~~esl~s~~~~~d~~d~~cP~~cf~--~L~~L~~lnlsnN~i~~i~~~aFe 295 (498)
T KOG4237|consen 226 VSPYRLYYKR------INQEDARKF--LCSLESLPSRLSSEDFPDSICPAKCFK--KLPNLRKLNLSNNKITRIEDGAFE 295 (498)
T ss_pred cchHHHHHHH------hcccchhhh--hhhHHhHHHhhccccCcCCcChHHHHh--hcccceEeccCCCccchhhhhhhc
Confidence 1111111100 000000000 0011111 1111122223322 33 58999999999997543333 788
Q ss_pred CCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC-----c
Q 048758 569 QLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ-----L 643 (777)
Q Consensus 569 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~-----l 643 (777)
.+..+++|.|..|. ++.+....+ ..+..|+.|++++++- +......+..+.+|..|.+-.++. +
T Consensus 296 ~~a~l~eL~L~~N~-l~~v~~~~f-----~~ls~L~tL~L~~N~i-----t~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 296 GAAELQELYLTRNK-LEFVSSGMF-----QGLSGLKTLSLYDNQI-----TTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred chhhhhhhhcCcch-HHHHHHHhh-----hccccceeeeecCCee-----EEEecccccccceeeeeehccCcccCccch
Confidence 89999999999875 333322222 2388999999998752 122223335567788888775441 1
Q ss_pred ---ccc-----------cCCCCCccEEEEcCCCCcccC--CCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCC
Q 048758 644 ---LVT-----------IQCLPALSELQIDGCKRVVFS--SPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQ 707 (777)
Q Consensus 644 ---~~~-----------~~~l~~L~~L~l~~~~~l~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 707 (777)
-+| .+....++.+.+++...-++. +...+..+ .....+..++-+.++.=.....
T Consensus 365 ~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~----------~s~~cP~~c~c~~tVvRcSnk~ 434 (498)
T KOG4237|consen 365 AWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCL----------TSSPCPPPCTCLDTVVRCSNKL 434 (498)
T ss_pred HHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCC----------CCCCCCCCcchhhhhHhhcccc
Confidence 111 122346777777776533321 11111100 1112233445555553223345
Q ss_pred CccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCccccCCCCCC
Q 048758 708 LLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVSFPEVALPS 773 (777)
Q Consensus 708 l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~~~p~ 773 (777)
++.+|.. .|..-.+|++.+ +.++++|.. .+.+| .+++++ +.+..+....+|.
T Consensus 435 lk~lp~~---------iP~d~telyl~g-n~~~~vp~~--~~~~l-~~dls~-n~i~~Lsn~tf~n 486 (498)
T KOG4237|consen 435 LKLLPRG---------IPVDVTELYLDG-NAITSVPDE--LLRSL-LLDLSN-NRISSLSNYTFSN 486 (498)
T ss_pred hhhcCCC---------CCchhHHHhccc-chhcccCHH--HHhhh-hccccc-Cceehhhcccccc
Confidence 6666643 346778889988 688888876 56777 778875 4555666554443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=5.4e-12 Score=141.95 Aligned_cols=92 Identities=13% Similarity=0.278 Sum_probs=69.6
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
++|+.|+|++| .+..+|..+. .+|++|++++|.++.+|..+. .+|+.|++++| .+..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECc
Confidence 46888899888 7888887664 589999999998888887654 47889999988 6778887664 578899998
Q ss_pred CcccccccCcccccccCCcccCc
Q 048758 424 NVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 424 ~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
+|. +..+|..+. .+|+.|.+
T Consensus 271 ~N~-L~~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 271 HNK-ISCLPENLP--EELRYLSV 290 (754)
T ss_pred CCc-cCccccccC--CCCcEEEC
Confidence 877 777776543 35555543
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=7.4e-14 Score=120.47 Aligned_cols=101 Identities=28% Similarity=0.397 Sum_probs=78.5
Q ss_pred cCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEe
Q 048758 342 HLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLK 421 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~ 421 (777)
.+.+.+.|-|++| .+..+|..|..+.+|+.|++.+|+|+++|.+++.+++|++|+++-| .+..+|.+++.++.|+.||
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 3566777888888 7888888888888999999988888888888888889999888888 7788888888888888888
Q ss_pred cCCcccc-cccCcccccccCCccc
Q 048758 422 NSNVHSL-EEMPKGFGKLTSLLTL 444 (777)
Q Consensus 422 l~~~~~~-~~~p~~~~~l~~L~~L 444 (777)
+.+|+.- ..+|..|..++-|+-|
T Consensus 109 ltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred ccccccccccCCcchhHHHHHHHH
Confidence 8887622 2355545444444443
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=1.1e-12 Score=128.55 Aligned_cols=388 Identities=18% Similarity=0.129 Sum_probs=214.3
Q ss_pred HHHHHHHHccCCceeEEeecCccCccc-cCccccCcCccCeeeccC-Ccccccchh-hhccccCcEEeeCCCcCccccch
Q 048758 333 WSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEIGNLKHLRCLNLSR-TRIQILPES-INSLYNLHTILLEDCWKLKKLCK 409 (777)
Q Consensus 333 ~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~L~~-~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 409 (777)
..+++..|+.+++||.|||+.| .+.. -|.+|..+..|-.|-+.+ |+|+++|.. +++|..|+.|.+.-|+.......
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~ 158 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQD 158 (498)
T ss_pred ccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHH
Confidence 3467788999999999999988 6666 578899998877765555 899999865 78899999999988833334445
Q ss_pred hccccCcccEEecCCcccccccCc-ccccccCCcccCcEEecCCCCCCccccccccccCC--cEEEcccccc--------
Q 048758 410 DMGNLTKLRHLKNSNVHSLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQG--RLKISKLENV-------- 478 (777)
Q Consensus 410 ~~~~L~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~--~l~i~~l~~~-------- 478 (777)
.+..|++|..|.+..|. +..+++ .+..+..++++.+-.+..... ..++.+..... ..........
T Consensus 159 al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icd---CnL~wla~~~a~~~ietsgarc~~p~rl~~~ 234 (498)
T KOG4237|consen 159 ALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICD---CNLPWLADDLAMNPIETSGARCVSPYRLYYK 234 (498)
T ss_pred HHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccc---cccchhhhHHhhchhhcccceecchHHHHHH
Confidence 68889999999988887 777877 477888888875543331111 11111111000 0000000000
Q ss_pred CCcccchhhccCcccccccceEeeccCCCcc-chHHHhcccCCCCCCCCeEEEeecCCCCCCc-ccCCCCCCCeeEEEEe
Q 048758 479 KDVGDASEAQLNNKVNLEALILEWSARSERC-EFETQVLSMLKPHRDVQELTITGYSGTKFPI-WLGDSSFSKLVQLKLE 556 (777)
Q Consensus 479 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~ 556 (777)
............ +++.+--.... .+ .........+..+++|++|++++|++..+.+ |+. ....++.|.|.
T Consensus 235 Ri~q~~a~kf~c---~~esl~s~~~~---~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe--~~a~l~eL~L~ 306 (498)
T KOG4237|consen 235 RINQEDARKFLC---SLESLPSRLSS---EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFE--GAAELQELYLT 306 (498)
T ss_pred Hhcccchhhhhh---hHHhHHHhhcc---ccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhc--chhhhhhhhcC
Confidence 000000000111 12222111000 00 0001112336778999999999999987754 444 58889999999
Q ss_pred CCCCCCCCC--CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccc--------hhhhhccc--cCC
Q 048758 557 GCGKCTSLP--SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTE--------WEEWIPCG--AGT 624 (777)
Q Consensus 557 ~~~~~~~l~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------l~~~~~~~--~~~ 624 (777)
.|+. ..+. .+..+..|+.|+|.+|..-...+..|.. ..+|.+|.+-.++- +.+|.... .+.
T Consensus 307 ~N~l-~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~------~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~ 379 (498)
T KOG4237|consen 307 RNKL-EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT------LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGN 379 (498)
T ss_pred cchH-HHHHHHhhhccccceeeeecCCeeEEEecccccc------cceeeeeehccCcccCccchHHHHHHHhhCCCCCC
Confidence 9863 3343 5778899999999998655555554433 67788888876541 23332211 111
Q ss_pred CC-CCCCCccEEEEecCCCcccccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEcc
Q 048758 625 LP-RRLLLLETLDITSCDQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQIS 703 (777)
Q Consensus 625 ~~-~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 703 (777)
.+ .....++.+.+++...-......-..+--+.-+.|+.-. +-+.+..=-.+..+..++..++ ..-..|++.
T Consensus 380 ~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c----~c~~tVvRcSnk~lk~lp~~iP---~d~telyl~ 452 (498)
T KOG4237|consen 380 PRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPC----TCLDTVVRCSNKLLKLLPRGIP---VDVTELYLD 452 (498)
T ss_pred CCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCc----chhhhhHhhcccchhhcCCCCC---chhHHHhcc
Confidence 11 233467777776643111011111112122222232111 1111111111112233343333 234456666
Q ss_pred CCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCch-hhcCCCCCccEEEecC
Q 048758 704 RCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLP-QALLTLSSLTEMRIYG 759 (777)
Q Consensus 704 ~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~ 759 (777)
+ +.++++|.+. ..+| .+++++ +.+..+. ..+.++++|.+|-|++
T Consensus 453 g-n~~~~vp~~~---------~~~l-~~dls~-n~i~~Lsn~tf~n~tql~tlilsy 497 (498)
T KOG4237|consen 453 G-NAITSVPDEL---------LRSL-LLDLSN-NRISSLSNYTFSNMTQLSTLILSY 497 (498)
T ss_pred c-chhcccCHHH---------Hhhh-hccccc-CceehhhcccccchhhhheeEEec
Confidence 6 4677776542 1567 788888 4555443 3455677777776654
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.18 E-value=5.4e-13 Score=115.21 Aligned_cols=90 Identities=28% Similarity=0.467 Sum_probs=80.1
Q ss_pred ccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcccc
Q 048758 357 IFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFG 436 (777)
Q Consensus 357 l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~ 436 (777)
+.++|. +.++.+...|-|++|+++..|+.|..|.+|+.|++++| .+.++|..++.|++|++|+++-|+ +..+|.+||
T Consensus 23 f~~~~g-Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfg 99 (264)
T KOG0617|consen 23 FEELPG-LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFG 99 (264)
T ss_pred Hhhccc-ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccC
Confidence 344543 55788889999999999999999999999999999999 899999999999999999999988 888999999
Q ss_pred cccCCcccCcEEe
Q 048758 437 KLTSLLTLGRFVV 449 (777)
Q Consensus 437 ~l~~L~~L~~~~~ 449 (777)
.++.|+.|++..+
T Consensus 100 s~p~levldltyn 112 (264)
T KOG0617|consen 100 SFPALEVLDLTYN 112 (264)
T ss_pred CCchhhhhhcccc
Confidence 9999999876544
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.03 E-value=3.5e-11 Score=125.84 Aligned_cols=70 Identities=24% Similarity=0.230 Sum_probs=36.6
Q ss_pred hhHHHHHHHHccCCceeEEeecCccCc-----cccCccccCcCccCeeeccCCcccc-------cchhhhccccCcEEee
Q 048758 331 LAWSALQMLLNHLPRLRVFSLRGYCNI-----FNLPNEIGNLKHLRCLNLSRTRIQI-------LPESINSLYNLHTILL 398 (777)
Q Consensus 331 ~~~~~~~~~~~~l~~L~~L~L~~~~~l-----~~lp~~i~~l~~L~~L~L~~~~i~~-------lp~~i~~L~~L~~L~l 398 (777)
+........+..+..|++|+++++ .+ ..++..+...++|++|+++++.+.. ++..+.++++|+.|++
T Consensus 10 l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 88 (319)
T cd00116 10 LKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDL 88 (319)
T ss_pred ccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEc
Confidence 333344455566666777777766 33 2244445555566666666655442 1233444455555555
Q ss_pred CCC
Q 048758 399 EDC 401 (777)
Q Consensus 399 ~~~ 401 (777)
++|
T Consensus 89 ~~~ 91 (319)
T cd00116 89 SDN 91 (319)
T ss_pred cCC
Confidence 555
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=4.6e-11 Score=124.94 Aligned_cols=136 Identities=21% Similarity=0.154 Sum_probs=90.9
Q ss_pred CcchhhhccCCCccEEeeCcccCCCCchh---hHHHHHHHHccCCceeEEeecCccCcc-------ccCccccCcCccCe
Q 048758 303 DTRLEFICDVQHLRTFLPMKLSDFGDNYL---AWSALQMLLNHLPRLRVFSLRGYCNIF-------NLPNEIGNLKHLRC 372 (777)
Q Consensus 303 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~~L~L~~~~~l~-------~lp~~i~~l~~L~~ 372 (777)
......+..+..++.+.+.+ +.+ ....+...+...++|+.|+++++ .+. .++..+..+++|+.
T Consensus 13 ~~~~~~~~~l~~L~~l~l~~------~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~ 85 (319)
T cd00116 13 ERATELLPKLLCLQVLRLEG------NTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQE 85 (319)
T ss_pred cchHHHHHHHhhccEEeecC------CCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeE
Confidence 33345556666677774433 333 23445666788889999999987 343 24456778999999
Q ss_pred eeccCCccc-ccchhhhcccc---CcEEeeCCCcCcc-----ccchhcccc-CcccEEecCCccccc----ccCcccccc
Q 048758 373 LNLSRTRIQ-ILPESINSLYN---LHTILLEDCWKLK-----KLCKDMGNL-TKLRHLKNSNVHSLE----EMPKGFGKL 438 (777)
Q Consensus 373 L~L~~~~i~-~lp~~i~~L~~---L~~L~l~~~~~l~-----~lp~~~~~L-~~L~~L~l~~~~~~~----~~p~~~~~l 438 (777)
|++++|.+. ..+..+..+.+ |++|++++|. +. .+...+..+ ++|+.|++++|.... .++..+..+
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRAN 164 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhC
Confidence 999999987 45556666666 9999999994 43 233445667 899999999998321 223334455
Q ss_pred cCCcccCc
Q 048758 439 TSLLTLGR 446 (777)
Q Consensus 439 ~~L~~L~~ 446 (777)
.+|++|++
T Consensus 165 ~~L~~L~l 172 (319)
T cd00116 165 RDLKELNL 172 (319)
T ss_pred CCcCEEEC
Confidence 56666644
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.71 E-value=2.6e-10 Score=113.05 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=48.2
Q ss_pred ceeEEeecCccCcccc--CccccCcCccCeeeccCCc-cc--ccchhhhccccCcEEeeCCCcCccccch--hccccCcc
Q 048758 345 RLRVFSLRGYCNIFNL--PNEIGNLKHLRCLNLSRTR-IQ--ILPESINSLYNLHTILLEDCWKLKKLCK--DMGNLTKL 417 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~~~~L~~L 417 (777)
.|+.|.+.|+.....- -..-.++++++.|.+.+|. ++ .+-..-..+.+|++|++..|..++...- -....++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5788888887655442 2223567777777777764 22 1112223567777777777656554321 13356667
Q ss_pred cEEecCCccc
Q 048758 418 RHLKNSNVHS 427 (777)
Q Consensus 418 ~~L~l~~~~~ 427 (777)
++|++++|..
T Consensus 219 ~~lNlSwc~q 228 (483)
T KOG4341|consen 219 KYLNLSWCPQ 228 (483)
T ss_pred HHhhhccCch
Confidence 7777776653
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.66 E-value=1.4e-09 Score=111.93 Aligned_cols=103 Identities=30% Similarity=0.434 Sum_probs=75.1
Q ss_pred HHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcc
Q 048758 338 MLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKL 417 (777)
Q Consensus 338 ~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L 417 (777)
..+..|-.|..|.|..| .+..+|..++++..|.+|+|+.|+++.+|..++.|+ |+.|-+++| +++.+|..++.+..|
T Consensus 92 ~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTL 168 (722)
T ss_pred hHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhH
Confidence 33455556667777766 567777777777777888887777777777777665 777777777 777777777777777
Q ss_pred cEEecCCcccccccCcccccccCCccc
Q 048758 418 RHLKNSNVHSLEEMPKGFGKLTSLLTL 444 (777)
Q Consensus 418 ~~L~l~~~~~~~~~p~~~~~l~~L~~L 444 (777)
.+|+.+.|. +..+|..++.+.+|+.|
T Consensus 169 ~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 169 AHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred HHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 777777777 77777777777766666
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.1e-09 Score=105.37 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=73.5
Q ss_pred CCCccEEEEecCCC----cccccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCccccccccCCCCCCCCCe
Q 048758 629 LLLLETLDITSCDQ----LLVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNR 699 (777)
Q Consensus 629 l~~L~~L~l~~c~~----l~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 699 (777)
++.|+.|.++.|.- +-..+..+|+|+.|++.+|.... ...+..|+.|+|++|+.++.-.......|+.|+.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 45566666666641 12234456777777777774222 2334677777777777666555555667788888
Q ss_pred EEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCch--hhcCCCCCccEEEec
Q 048758 700 LQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLP--QALLTLSSLTEMRIY 758 (777)
Q Consensus 700 L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~ 758 (777)
|+++.| .+.++..-..-..+....+++|+.|++..+ ++..++ ..+..+++|+.|.+.
T Consensus 276 Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 276 LNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred hhcccc-CcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcc
Confidence 888876 454442111000001122378899988884 554443 234456677777654
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.61 E-value=8.8e-10 Score=109.43 Aligned_cols=265 Identities=17% Similarity=0.165 Sum_probs=155.5
Q ss_pred cCcccccccceEeeccCCCccchHHHhcccC-CCCCCCCeEEEeecCCCCCCccc-CCCCCCCeeEEEEeCCCCCCC--C
Q 048758 489 LNNKVNLEALILEWSARSERCEFETQVLSML-KPHRDVQELTITGYSGTKFPIWL-GDSSFSKLVQLKLEGCGKCTS--L 564 (777)
Q Consensus 489 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~-~~~~l~~L~~L~L~~~~~~~~--l 564 (777)
..++++++.|.+.++..+ ....+..+ ..++.|++|++..|...+--... -...+++|++|+++.|+.+.. +
T Consensus 160 ~~~CpnIehL~l~gc~~i-----Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv 234 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKI-----TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGV 234 (483)
T ss_pred hhhCCchhhhhhhcceec-----cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcc
Confidence 445666666666554311 11122222 23456666666554321111000 011466666666666665443 2
Q ss_pred C-CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCc
Q 048758 565 P-SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQL 643 (777)
Q Consensus 565 ~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l 643 (777)
. .......++.+.+.||..++.-....... -.+-+.++++..|..+.+. ....+...+..|+.|+.++|..+
T Consensus 235 ~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~----~~~~i~~lnl~~c~~lTD~---~~~~i~~~c~~lq~l~~s~~t~~ 307 (483)
T KOG4341|consen 235 QALQRGCKELEKLSLKGCLELELEALLKAAA----YCLEILKLNLQHCNQLTDE---DLWLIACGCHALQVLCYSSCTDI 307 (483)
T ss_pred hHHhccchhhhhhhhcccccccHHHHHHHhc----cChHhhccchhhhccccch---HHHHHhhhhhHhhhhcccCCCCC
Confidence 1 22334445666666665443221111110 1344555555555444332 11122345778999999999876
Q ss_pred cc-----ccCCCCCccEEEEcCCCCcc-------cCCCCCccEEEEeecCccccc-cccCCCCCCCCCeEEccCCCCCcc
Q 048758 644 LV-----TIQCLPALSELQIDGCKRVV-------FSSPHLVHAVNVREQAYFWRS-ETRLPQDIRSLNRLQISRCPQLLS 710 (777)
Q Consensus 644 ~~-----~~~~l~~L~~L~l~~~~~l~-------~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~c~~l~~ 710 (777)
+. ...+.++|+.|.++.|..+. ......|+.+++.+|..+.+. ..+...+++.|+.|.+++|..++.
T Consensus 308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence 42 24567999999999998665 234578888999998887765 455667899999999999976654
Q ss_pred ccccccccCCCCCcCCcccEEeeecCCCCCC-chhhcCCCCCccEEEecCCCCCcccc
Q 048758 711 LVTEEEHDQQQPELPCRLQFLELRNCEGLTR-LPQALLTLSSLTEMRIYGCTSLVSFP 767 (777)
Q Consensus 711 l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~lp 767 (777)
- ++.+...-.+-...|+.|.+++|+.++. .-+.+..+++|+.+++.+|..+.+=|
T Consensus 388 ~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~ 443 (483)
T KOG4341|consen 388 E--GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEA 443 (483)
T ss_pred h--hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhh
Confidence 3 1222211112226899999999999874 33556788999999999998776543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=3.8e-08 Score=105.99 Aligned_cols=107 Identities=32% Similarity=0.411 Sum_probs=91.6
Q ss_pred HccCCceeEEeecCccCccccCccccCcC-ccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCccc
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLK-HLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 418 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~ 418 (777)
...++.++.|++.++ .+.++|...+.+. +|+.|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 445578999999988 8999998888885 999999999999999989999999999999999 8999988777999999
Q ss_pred EEecCCcccccccCcccccccCCcccCcEEe
Q 048758 419 HLKNSNVHSLEEMPKGFGKLTSLLTLGRFVV 449 (777)
Q Consensus 419 ~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~ 449 (777)
.|++++|. +..+|..++.+..|++|.+..+
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 99999999 8888887666666777755433
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=8.8e-08 Score=87.62 Aligned_cols=107 Identities=30% Similarity=0.380 Sum_probs=52.2
Q ss_pred cCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhh-hccccCcEEeeCCCcCccccc--hhccccCccc
Q 048758 342 HLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLEDCWKLKKLC--KDMGNLTKLR 418 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp--~~~~~L~~L~ 418 (777)
.+.+|++|+|++| .+..++ .+..+++|++|++++|+|+.++..+ ..+++|++|++++| .+..+. ..+..+++|+
T Consensus 40 ~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcc
Confidence 5678899999988 788876 4778899999999999999887655 46889999999988 555442 3367888999
Q ss_pred EEecCCcccccccCc----ccccccCCcccCcEEecCC
Q 048758 419 HLKNSNVHSLEEMPK----GFGKLTSLLTLGRFVVGKD 452 (777)
Q Consensus 419 ~L~l~~~~~~~~~p~----~~~~l~~L~~L~~~~~~~~ 452 (777)
.|++.+|+ +...+. -+..+++|+.|+...+...
T Consensus 117 ~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ 153 (175)
T PF14580_consen 117 VLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTEE 153 (175)
T ss_dssp EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS-
T ss_pred eeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccHH
Confidence 99999988 444442 2567888888877665443
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=8.8e-08 Score=96.03 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=90.1
Q ss_pred CccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCch-hhHHHHHHHHccCCceeEEeecCccCccccCccc-
Q 048758 287 SQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNY-LAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEI- 364 (777)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i- 364 (777)
.++++.+++....-...........|++++.| +++.|- ..+..+-.+...+++|+.|+|+.| .+....++.
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~L------dLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~ 192 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDL------DLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNT 192 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceee------cchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccc
Confidence 34555555544322111111355677888877 444332 245666777888888888888887 443322221
Q ss_pred -cCcCccCeeeccCCccc--ccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCc--cccccc
Q 048758 365 -GNLKHLRCLNLSRTRIQ--ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPK--GFGKLT 439 (777)
Q Consensus 365 -~~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~--~~~~l~ 439 (777)
..+.+|+.|.++.|.++ ++-.-...+++|+.|++.+|..+..-.....-+..|+.|++++|. +..++. ..+.++
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLP 271 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-cccccccccccccc
Confidence 36778888888888877 333344567888888888874332222234456778888888887 444542 245555
Q ss_pred CCcccC
Q 048758 440 SLLTLG 445 (777)
Q Consensus 440 ~L~~L~ 445 (777)
.|..|.
T Consensus 272 ~L~~Ln 277 (505)
T KOG3207|consen 272 GLNQLN 277 (505)
T ss_pred chhhhh
Confidence 555553
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=8.3e-09 Score=106.48 Aligned_cols=193 Identities=23% Similarity=0.237 Sum_probs=146.8
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEec
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKN 422 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l 422 (777)
+..-...+|+.| .+.++|..++-+..|+.|.|..|.+..+|..+++|..|.+||++.| .+..+|..+..|+ |+.|-+
T Consensus 74 ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred ccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 344567888888 8899999999999999999999999999999999999999999999 8999999998886 888888
Q ss_pred CCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEee
Q 048758 423 SNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEW 502 (777)
Q Consensus 423 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 502 (777)
++|+ ++.+|.+++.+..|..|+...+...+ .+..+..+.+|+.|.+.-
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~s-------------------------------lpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQS-------------------------------LPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhhhh-------------------------------chHHhhhHHHHHHHHHhh
Confidence 8888 99999999977777777554443221 122233444555555542
Q ss_pred ccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC----CCCCCCCcceeee
Q 048758 503 SARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP----SVGQLPFLKELLI 578 (777)
Q Consensus 503 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~----~~~~l~~L~~L~L 578 (777)
+. -...+..+..+ .|..|++++|++..+|..+. .++.|+.|-|.+|+ +++.| .-|...--++|+.
T Consensus 199 n~-------l~~lp~El~~L-pLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 199 NH-------LEDLPEELCSL-PLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred hh-------hhhCCHHHhCC-ceeeeecccCceeecchhhh--hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecc
Confidence 21 11223334433 38999999999999999888 69999999999998 45555 2344555688888
Q ss_pred cCC
Q 048758 579 SGM 581 (777)
Q Consensus 579 ~~~ 581 (777)
.-|
T Consensus 268 qA~ 270 (722)
T KOG0532|consen 268 QAC 270 (722)
T ss_pred hhc
Confidence 877
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.39 E-value=1.3e-07 Score=86.58 Aligned_cols=101 Identities=28% Similarity=0.444 Sum_probs=35.0
Q ss_pred ccCCceeEEeecCccCccccCcccc-CcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhc-cccCccc
Q 048758 341 NHLPRLRVFSLRGYCNIFNLPNEIG-NLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDM-GNLTKLR 418 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~-~~L~~L~ 418 (777)
.+...++.|+|++| .+..+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++| .++.++..+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 34557899999999 777764 465 6889999999999999885 6888999999999999 788886555 4689999
Q ss_pred EEecCCcccccccCc--ccccccCCcccCc
Q 048758 419 HLKNSNVHSLEEMPK--GFGKLTSLLTLGR 446 (777)
Q Consensus 419 ~L~l~~~~~~~~~p~--~~~~l~~L~~L~~ 446 (777)
+|++++|+ +..+.. .+..+++|+.|++
T Consensus 92 ~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L 120 (175)
T PF14580_consen 92 ELYLSNNK-ISDLNELEPLSSLPKLRVLSL 120 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-
T ss_pred EEECcCCc-CCChHHhHHHHcCCCcceeec
Confidence 99999988 555432 2344455555433
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=2e-06 Score=88.43 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=33.4
Q ss_pred CCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCC--CCCCchhhcCCCCCccEEEecCCCC
Q 048758 695 RSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCE--GLTRLPQALLTLSSLTEMRIYGCTS 762 (777)
Q Consensus 695 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~--~l~~lp~~~~~l~~L~~L~l~~c~~ 762 (777)
++|++|++++|..+. +| ..+|.+|+.|+++.+. .+......+- +++ .|++.+|-.
T Consensus 156 sSLk~L~Is~c~~i~-LP---------~~LP~SLk~L~ls~n~~~sLeI~~~sLP--~nl-~L~f~n~lk 212 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LP---------EKLPESLQSITLHIEQKTTWNISFEGFP--DGL-DIDLQNSVL 212 (426)
T ss_pred CcccEEEecCCCccc-Cc---------ccccccCcEEEecccccccccCcccccc--ccc-Eechhhhcc
Confidence 689999999987552 32 2366899999998753 1111111111 344 677777744
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=8.9e-07 Score=66.17 Aligned_cols=56 Identities=25% Similarity=0.459 Sum_probs=27.6
Q ss_pred ceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCC
Q 048758 345 RLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDC 401 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~ 401 (777)
+|++|++++| .+..+| ..|..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555554 444444 234455555555555555554432 3445555555555544
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=8.5e-07 Score=66.26 Aligned_cols=58 Identities=33% Similarity=0.452 Sum_probs=52.2
Q ss_pred CccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccEEecCCcc
Q 048758 368 KHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 368 ~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~l~~~~ 426 (777)
++|++|++++|+++.+|+ .+.++++|++|++++| .+..+|. .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 579999999999999985 6789999999999999 7888875 58999999999999986
No 38
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=1.6e-06 Score=89.24 Aligned_cols=135 Identities=18% Similarity=0.227 Sum_probs=86.0
Q ss_pred CCCccEEEEecCCCcccccCCC-CCccEEEEcCCCCcccCC---CCCccEEEEeecCccccccccCCCCCCCCCeEEccC
Q 048758 629 LLLLETLDITSCDQLLVTIQCL-PALSELQIDGCKRVVFSS---PHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISR 704 (777)
Q Consensus 629 l~~L~~L~l~~c~~l~~~~~~l-~~L~~L~l~~~~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 704 (777)
++.+++|++++| .+.. ++.+ ++|++|.+++|..+...+ ...|+.|.+.+|..+..+| ++|++|++.+
T Consensus 51 ~~~l~~L~Is~c-~L~s-LP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP-------~sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDC-DIES-LPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP-------ESVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCC-CCcc-cCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc-------cccceEEeCC
Confidence 578999999999 3422 2344 479999999998876322 3689999999987665433 4577777764
Q ss_pred --CCCCccccccccccCC----------C-CCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCCC-CccccCCC
Q 048758 705 --CPQLLSLVTEEEHDQQ----------Q-PELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTS-LVSFPEVA 770 (777)
Q Consensus 705 --c~~l~~l~~~~~~~~~----------~-~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~-l~~lp~~~ 770 (777)
|..+..+|.+...+.- . ..+|++|++|++++|..+. +|..+- .+|+.|.++.+.. --.++...
T Consensus 122 n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n~~~sLeI~~~s 198 (426)
T PRK15386 122 SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIEQKTTWNISFEG 198 (426)
T ss_pred CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEecccccccccCcccc
Confidence 3345566655433321 0 1367788888888887553 443332 5888888875421 11355555
Q ss_pred CCCCC
Q 048758 771 LPSQL 775 (777)
Q Consensus 771 ~p~~l 775 (777)
+|+++
T Consensus 199 LP~nl 203 (426)
T PRK15386 199 FPDGL 203 (426)
T ss_pred ccccc
Confidence 66554
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=1.4e-07 Score=89.63 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=50.6
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccch------------------------hhhccccCcE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE------------------------SINSLYNLHT 395 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~------------------------~i~~L~~L~~ 395 (777)
+.-+++|..+.++.| .-..+-.....-+.|+++..+++.++..|. .+.-.+.|+.
T Consensus 210 l~~f~~l~~~~~s~~-~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSAL-STENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hHHhhhhheeeeecc-chhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 445666777777766 333333322334566677666655442210 1112344555
Q ss_pred EeeCCCcCccccchhccccCcccEEecCCcccccccCcccccccCCcccCc
Q 048758 396 ILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 396 L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
||+++| .++.+-+++.-++.++.|+++.|. +..+. .+..+.+|+.|++
T Consensus 289 lDLS~N-~I~~iDESvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDL 336 (490)
T KOG1259|consen 289 LDLSGN-LITQIDESVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDL 336 (490)
T ss_pred cccccc-chhhhhhhhhhccceeEEeccccc-eeeeh-hhhhcccceEeec
Confidence 555555 455555555555555555555555 33332 2444444444433
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.19 E-value=2.2e-06 Score=96.80 Aligned_cols=94 Identities=26% Similarity=0.310 Sum_probs=81.1
Q ss_pred ceeEEeecCccCccccCccccCcCccCeeeccCCccc-ccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 345 RLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
.++.|+|++|..-..+|..++++++|+.|+|++|.+. .+|..++.+++|+.|++++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999988444568999999999999999999998 889899999999999999995556889999999999999999
Q ss_pred CcccccccCcccccc
Q 048758 424 NVHSLEEMPKGFGKL 438 (777)
Q Consensus 424 ~~~~~~~~p~~~~~l 438 (777)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998667888776653
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=2.6e-07 Score=87.88 Aligned_cols=100 Identities=25% Similarity=0.290 Sum_probs=60.4
Q ss_pred cCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEe
Q 048758 342 HLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLK 421 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~ 421 (777)
..+.|+.|||++| .++.+.++..-++.+|.|++++|+|..+.. +..|.+|+.||+++| .+..+-..=.+|-+.+.|.
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeee
Confidence 3456677777776 666666666667777777777777766533 666777777777776 4444433233555666666
Q ss_pred cCCcccccccCcccccccCCcccCc
Q 048758 422 NSNVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 422 l~~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
+++|. ++.+ .+++++-+|..|+.
T Consensus 359 La~N~-iE~L-SGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 359 LAQNK-IETL-SGLRKLYSLVNLDL 381 (490)
T ss_pred hhhhh-Hhhh-hhhHhhhhheeccc
Confidence 66665 4443 34445555555543
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.14 E-value=1.4e-06 Score=93.85 Aligned_cols=102 Identities=28% Similarity=0.398 Sum_probs=87.1
Q ss_pred HccCC-ceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCccc
Q 048758 340 LNHLP-RLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 418 (777)
Q Consensus 340 ~~~l~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~ 418 (777)
...+. +|+.|++++| .+..+|..++.+++|+.|++++|.+.++|...+.+.+|+.|++++| .+..+|..+..+..|+
T Consensus 135 ~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~ 212 (394)
T COG4886 135 IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALE 212 (394)
T ss_pred cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhh
Confidence 44453 8999999998 8999988899999999999999999999998889999999999999 8999998777788899
Q ss_pred EEecCCcccccccCcccccccCCccc
Q 048758 419 HLKNSNVHSLEEMPKGFGKLTSLLTL 444 (777)
Q Consensus 419 ~L~l~~~~~~~~~p~~~~~l~~L~~L 444 (777)
+|.+++|. ....+..+.++.++..+
T Consensus 213 ~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 213 ELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhcCCc-ceecchhhhhccccccc
Confidence 99999997 45555556666665555
No 43
>PLN03150 hypothetical protein; Provisional
Probab=98.05 E-value=6.2e-06 Score=93.14 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=83.8
Q ss_pred CCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCccc-ccchhhhccccCcEEeeCCCcCc
Q 048758 326 FGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKL 404 (777)
Q Consensus 326 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l 404 (777)
++.+.+.. .++..+.++++|+.|+|++|.....+|..++.+++|++|+|++|.+. .+|..++++++|++|++++|...
T Consensus 425 L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 425 LDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 33444432 34455889999999999999544579999999999999999999998 88999999999999999999666
Q ss_pred cccchhcccc-CcccEEecCCcccccc
Q 048758 405 KKLCKDMGNL-TKLRHLKNSNVHSLEE 430 (777)
Q Consensus 405 ~~lp~~~~~L-~~L~~L~l~~~~~~~~ 430 (777)
..+|..++.+ .++..+++.+|..+..
T Consensus 504 g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 504 GRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred ccCChHHhhccccCceEEecCCccccC
Confidence 7889887664 5677888888874443
No 44
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.04 E-value=0.00017 Score=87.08 Aligned_cols=213 Identities=16% Similarity=0.175 Sum_probs=127.3
Q ss_pred HHHHHHHHHhC--CCeEEEEEeCCCccchhchh-hhccccCCCCCCcEEEEEeecHHHH--hhcc-cCCccccC----CC
Q 048758 25 SLQVKLKERLS--GKKFLLVLDDLWNENYNSWC-TLSCPFGAGASGSKIVVTHRNQDVA--ATMR-AVSGKTLK----EL 94 (777)
Q Consensus 25 ~~~~~l~~~L~--~~~~LlvLDdv~~~~~~~~~-~~~~~~~~~~~gs~iiiTTR~~~v~--~~~~-~~~~~~l~----~L 94 (777)
.....+...+. ..+++|||||+..-...... .+..-+....++.++|||||...-. .... ......+. ++
T Consensus 107 ~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f 186 (903)
T PRK04841 107 SLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAF 186 (903)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCC
Confidence 34444444443 67899999999553322222 2322233334567888999984211 1111 12234455 89
Q ss_pred ChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHHHhcccccccc-CccCchh
Q 048758 95 SDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFVLNTNIWDLRE-DKCDILP 173 (777)
Q Consensus 95 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~ 173 (777)
+.+|+.++|....... .+ .+.+.++.+.|+|+|+++..++..+........ ..... +.. +...+..
T Consensus 187 ~~~e~~~ll~~~~~~~----~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~ 253 (903)
T PRK04841 187 DHQEAQQFFDQRLSSP----IE---AAESSRLCDDVEGWATALQLIALSARQNNSSLH--DSARR----LAGINASHLSD 253 (903)
T ss_pred CHHHHHHHHHhccCCC----CC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh--hhhHh----hcCCCchhHHH
Confidence 9999999997654221 11 256788999999999999999988755421000 01111 111 1123444
Q ss_pred hHh-hcccCCChhhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHHHHHHHHHHHhhCcccccc-cCCCC
Q 048758 174 TLR-VSYHFLPPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLS-SKDTS 251 (777)
Q Consensus 174 ~l~-~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~-~~~~~ 251 (777)
-+. -.|+.||+..++.+...|+++ .++. .+..... +. +.+...++.|.+.+++... ..+..
T Consensus 254 ~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~-~l~~~l~------~~-------~~~~~~L~~l~~~~l~~~~~~~~~~ 316 (903)
T PRK04841 254 YLVEEVLDNVDLETRHFLLRCSVLR---SMND-ALIVRVT------GE-------ENGQMRLEELERQGLFIQRMDDSGE 316 (903)
T ss_pred HHHHHHHhcCCHHHHHHHHHhcccc---cCCH-HHHHHHc------CC-------CcHHHHHHHHHHCCCeeEeecCCCC
Confidence 333 347899999999999999985 2332 2222111 11 1245679999999996543 32334
Q ss_pred cEEecHHHHHHHHHhh
Q 048758 252 RFVMHDLINDLARWAA 267 (777)
Q Consensus 252 ~~~mhd~i~~~~~~~~ 267 (777)
.|.+|++++++.+...
T Consensus 317 ~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 317 WFRYHPLFASFLRHRC 332 (903)
T ss_pred EEehhHHHHHHHHHHH
Confidence 6889999999988665
No 45
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.00 E-value=4.4e-07 Score=88.68 Aligned_cols=91 Identities=23% Similarity=0.187 Sum_probs=56.3
Q ss_pred HHHHHccCCceeEEeecCccCccc----cCccccCcCccCeeeccCCc----ccccchh-------hhccccCcEEeeCC
Q 048758 336 LQMLLNHLPRLRVFSLRGYCNIFN----LPNEIGNLKHLRCLNLSRTR----IQILPES-------INSLYNLHTILLED 400 (777)
Q Consensus 336 ~~~~~~~l~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~L~~~~----i~~lp~~-------i~~L~~L~~L~l~~ 400 (777)
.......+..++.++|+||+.-.. +-+.+.+.++|+.-++++-- ..++|+. +-..++|++||||.
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 344467788899999999854332 44556777888888887642 1244543 33455777777777
Q ss_pred CcCccc----cchhccccCcccEEecCCcc
Q 048758 401 CWKLKK----LCKDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 401 ~~~l~~----lp~~~~~L~~L~~L~l~~~~ 426 (777)
|-.-.. +..-+.+.+.|++|.+.+|.
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 722222 12224556677777777666
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=7.9e-06 Score=55.63 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=20.5
Q ss_pred ccCeeeccCCcccccchhhhccccCcEEeeCCCcCcccc
Q 048758 369 HLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKL 407 (777)
Q Consensus 369 ~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l 407 (777)
+|++|++++|.|+.+|+.+++|++|++|++++| .+..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 455566666666655555556666666666665 44443
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=7.8e-08 Score=91.42 Aligned_cols=109 Identities=21% Similarity=0.123 Sum_probs=62.6
Q ss_pred ccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC---CCCCC
Q 048758 494 NLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP---SVGQL 570 (777)
Q Consensus 494 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~---~~~~l 570 (777)
.|+.|+++... .........+..+..|+.|.+.|+.... |....-..-.+|+.|+|+.|..++... .+.++
T Consensus 186 Rlq~lDLS~s~-----it~stl~~iLs~C~kLk~lSlEg~~LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSV-----ITVSTLHGILSQCSKLKNLSLEGLRLDD-PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhh-----eeHHHHHHHHHHHHhhhhccccccccCc-HHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 47777776431 1122333445667788888888877643 222111145678888888888776544 35667
Q ss_pred CCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCcc
Q 048758 571 PFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMT 612 (777)
Q Consensus 571 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 612 (777)
..|.+|+|+.|........... ...-++|+.|+++|+.
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V----~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAV----AHISETLTQLNLSGYR 297 (419)
T ss_pred hhHhhcCchHhhccchhhhHHH----hhhchhhhhhhhhhhH
Confidence 7788888887754332211110 1113556666666654
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=7.6e-06 Score=55.71 Aligned_cols=40 Identities=35% Similarity=0.497 Sum_probs=35.1
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccc
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP 384 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp 384 (777)
++|++|++++| .+.++|..+++|++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 47999999999 89999988999999999999999998775
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6.3e-07 Score=85.38 Aligned_cols=82 Identities=21% Similarity=0.241 Sum_probs=62.3
Q ss_pred CceeEEeecCccCccc--cCccccCcCccCeeeccCCccc-ccchhhhccccCcEEeeCCCcCccccchh--ccccCccc
Q 048758 344 PRLRVFSLRGYCNIFN--LPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKD--MGNLTKLR 418 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~--~~~L~~L~ 418 (777)
..|++|||+.. .++. +-..+..+.+|+.|.+.+.++. .+...|.+=.+|+.|++++|+.+++.... +.+++.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35889999865 4433 4444578889999999998887 55567778888999999999777665432 67888888
Q ss_pred EEecCCcc
Q 048758 419 HLKNSNVH 426 (777)
Q Consensus 419 ~L~l~~~~ 426 (777)
.|++++|.
T Consensus 264 ~LNlsWc~ 271 (419)
T KOG2120|consen 264 ELNLSWCF 271 (419)
T ss_pred hcCchHhh
Confidence 88888887
No 50
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=3.4e-06 Score=90.96 Aligned_cols=103 Identities=24% Similarity=0.320 Sum_probs=77.1
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
+..+++|.+|++.+| .+..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++++| .+..+. .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 667888999999888 7777766578889999999999988877 35677788889999988 666664 3666888888
Q ss_pred EecCCcccccccCcc-cccccCCcccCcE
Q 048758 420 LKNSNVHSLEEMPKG-FGKLTSLLTLGRF 447 (777)
Q Consensus 420 L~l~~~~~~~~~p~~-~~~l~~L~~L~~~ 447 (777)
+++++|. +..+... ...+.+++.+.+.
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDLG 194 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhcc
Confidence 8888888 5555432 3555666655443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=8.5e-06 Score=68.67 Aligned_cols=96 Identities=20% Similarity=0.228 Sum_probs=82.3
Q ss_pred HHHHHccCCceeEEeecCccCccccCcccc-CcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhcccc
Q 048758 336 LQMLLNHLPRLRVFSLRGYCNIFNLPNEIG-NLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNL 414 (777)
Q Consensus 336 ~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L 414 (777)
....+....+|...+|++| .++.+|..|. ..+.+..|+|.+|.|.++|.++..++.|+.|+++.| .+...|..+..|
T Consensus 45 avy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L 122 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPL 122 (177)
T ss_pred HHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHH
Confidence 3344677788999999998 8999998885 556899999999999999999999999999999999 788888888889
Q ss_pred CcccEEecCCcccccccCcc
Q 048758 415 TKLRHLKNSNVHSLEEMPKG 434 (777)
Q Consensus 415 ~~L~~L~l~~~~~~~~~p~~ 434 (777)
.+|-+|+..++. ...+|-.
T Consensus 123 ~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 123 IKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HhHHHhcCCCCc-cccCcHH
Confidence 999999998887 6666654
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.75 E-value=9.3e-06 Score=79.62 Aligned_cols=100 Identities=23% Similarity=0.270 Sum_probs=54.5
Q ss_pred CCCCchhhHH---HHHHHHccCCceeEEeecCccCccc----cCc-------cccCcCccCeeeccCCccc-----ccch
Q 048758 325 DFGDNYLAWS---ALQMLLNHLPRLRVFSLRGYCNIFN----LPN-------EIGNLKHLRCLNLSRTRIQ-----ILPE 385 (777)
Q Consensus 325 ~~~~~~~~~~---~~~~~~~~l~~L~~L~L~~~~~l~~----lp~-------~i~~l~~L~~L~L~~~~i~-----~lp~ 385 (777)
++++|++... .+...+.+-+.|+.-+++.- .... +|+ .+-.+++|++|+|++|.+. .+-.
T Consensus 36 ~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ 114 (382)
T KOG1909|consen 36 DLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEE 114 (382)
T ss_pred eccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHH
Confidence 3444544332 33344566667777777643 2221 332 2345557777777777655 2223
Q ss_pred hhhccccCcEEeeCCCcCccccc--------------hhccccCcccEEecCCcc
Q 048758 386 SINSLYNLHTILLEDCWKLKKLC--------------KDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~~lp--------------~~~~~L~~L~~L~l~~~~ 426 (777)
-++.+..|++|.+.+| .+.... ..+++-++|+.+....|+
T Consensus 115 ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 115 LLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred HHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4566777888888877 332211 113445667777666666
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.69 E-value=5.8e-06 Score=89.14 Aligned_cols=104 Identities=29% Similarity=0.375 Sum_probs=80.6
Q ss_pred cCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEe
Q 048758 342 HLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLK 421 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~ 421 (777)
.+..++.+++..| .+..+-..++.+.+|..|++.+|.|..+...+..+++|++|++++| .+..+ .++..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhe
Confidence 3455666667777 6766555688899999999999999988766888999999999999 77777 3478888899999
Q ss_pred cCCcccccccCcccccccCCcccCcEEec
Q 048758 422 NSNVHSLEEMPKGFGKLTSLLTLGRFVVG 450 (777)
Q Consensus 422 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~ 450 (777)
+.+|. +..+. ++..+.+|+.+++..+.
T Consensus 147 l~~N~-i~~~~-~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 147 LSGNL-ISDIS-GLESLKSLKLLDLSYNR 173 (414)
T ss_pred eccCc-chhcc-CCccchhhhcccCCcch
Confidence 99998 66653 45557777766554443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=8.3e-05 Score=83.77 Aligned_cols=132 Identities=20% Similarity=0.198 Sum_probs=92.9
Q ss_pred ccceEEEEEeCcCCCC-cchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccC
Q 048758 288 QSLRHFSYIRGQYDGD-TRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGN 366 (777)
Q Consensus 288 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~ 366 (777)
..++++.+.+...-.. .....-..+|.|++|.+-+. .+....+.....++++|+.||++++ +++.+ ..+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~------~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~ 193 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR------QFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISR 193 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc------eecchhHHHHhhccCccceeecCCC-CccCc-HHHhc
Confidence 3445555544332211 22233457899999966553 2334557778999999999999988 88888 67999
Q ss_pred cCccCeeeccCCccccc--chhhhccccCcEEeeCCCcCcccc--c----hhccccCcccEEecCCccc
Q 048758 367 LKHLRCLNLSRTRIQIL--PESINSLYNLHTILLEDCWKLKKL--C----KDMGNLTKLRHLKNSNVHS 427 (777)
Q Consensus 367 l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~l--p----~~~~~L~~L~~L~l~~~~~ 427 (777)
|++|+.|.+++-.++.- -..+.+|++|++||+|.......- . +.-..||+|+.||.+++..
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99999999999877732 356788999999999987443221 1 1123589999999998763
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=6.4e-05 Score=72.08 Aligned_cols=87 Identities=21% Similarity=0.241 Sum_probs=44.9
Q ss_pred HHccCCceeEEeecCccCccc---cCccccCcCccCeeeccCCcccccchhh-hccccCcEEeeCCCcC-ccccchhccc
Q 048758 339 LLNHLPRLRVFSLRGYCNIFN---LPNEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLEDCWK-LKKLCKDMGN 413 (777)
Q Consensus 339 ~~~~l~~L~~L~L~~~~~l~~---lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~-l~~lp~~~~~ 413 (777)
+-...+.++.|||.+| .+.. +-..+.+|++|++|+++.|.+..-.... ..+.+|++|-+.++.. .+..-..+..
T Consensus 66 ~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 66 FGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 3344556666666666 4433 2223346666666666666544211111 2355666666666521 1233333556
Q ss_pred cCcccEEecCCcc
Q 048758 414 LTKLRHLKNSNVH 426 (777)
Q Consensus 414 L~~L~~L~l~~~~ 426 (777)
++.++.|+++.|.
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 6666666666554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.24 E-value=0.00019 Score=80.88 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=44.7
Q ss_pred CceeEEeecCccCccc-cCcccc-CcCccCeeeccCCccc--ccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 344 PRLRVFSLRGYCNIFN-LPNEIG-NLKHLRCLNLSRTRIQ--ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~-lp~~i~-~l~~L~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
.+|+.|+++|...+.. -|..++ .++.|+.|.+.+-.+. +.-....++++|..||++++ +++.+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 4677777776544332 223333 5666777776665443 22233345666666666666 55555 55666666666
Q ss_pred EecCCc
Q 048758 420 LKNSNV 425 (777)
Q Consensus 420 L~l~~~ 425 (777)
|.+.+-
T Consensus 200 L~mrnL 205 (699)
T KOG3665|consen 200 LSMRNL 205 (699)
T ss_pred HhccCC
Confidence 655543
No 57
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=2.8e-05 Score=65.66 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=80.3
Q ss_pred CceeEEeecCccCccccCc---cccCcCccCeeeccCCcccccchhhhcc-ccCcEEeeCCCcCccccchhccccCcccE
Q 048758 344 PRLRVFSLRGYCNIFNLPN---EIGNLKHLRCLNLSRTRIQILPESINSL-YNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~---~i~~l~~L~~L~L~~~~i~~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
..+..++|+.| .+..++. .+....+|...+|++|.+...|+.+... +.+++|++.+| .+.++|.++..++.|+.
T Consensus 27 kE~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhh
Confidence 34677888888 5555544 4556778888899999999999887754 58999999999 89999999999999999
Q ss_pred EecCCcccccccCcccccccCCcccC
Q 048758 420 LKNSNVHSLEEMPKGFGKLTSLLTLG 445 (777)
Q Consensus 420 L~l~~~~~~~~~p~~~~~l~~L~~L~ 445 (777)
|+++.|. +...|..+..|.+|..|+
T Consensus 105 lNl~~N~-l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 105 LNLRFNP-LNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccccCc-cccchHHHHHHHhHHHhc
Confidence 9999999 777787777677666663
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.05 E-value=5.2e-05 Score=84.39 Aligned_cols=228 Identities=24% Similarity=0.279 Sum_probs=134.6
Q ss_pred CCCCCeEEEeecCCCCC---CcccCCCCCCCeeEEEEeCC-CCCCCCC-----CCCCCCCcceeeecCCCCceEeCcccc
Q 048758 522 HRDVQELTITGYSGTKF---PIWLGDSSFSKLVQLKLEGC-GKCTSLP-----SVGQLPFLKELLISGMDGVKIVGLEFY 592 (777)
Q Consensus 522 ~~~L~~L~l~~~~~~~~---p~~~~~~~l~~L~~L~L~~~-~~~~~l~-----~~~~l~~L~~L~L~~~~~l~~~~~~~~ 592 (777)
.+.|+.+.+.++..... -.... .+++|+.|++++| ......+ ....+++|+.|+++.|..++.......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALAL--KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHh--hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 68899998888754331 12222 5889999999984 3332222 344568899999999887666655443
Q ss_pred cCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCc-----ccccCCCCCccEEEEcCCC---Cc
Q 048758 593 GNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQL-----LVTIQCLPALSELQIDGCK---RV 664 (777)
Q Consensus 593 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-----~~~~~~l~~L~~L~l~~~~---~l 664 (777)
... +|+|+.|.+.+|..+.+ .....+...+++|++|++++|..+ ......+++|+.|.+..+. .+
T Consensus 265 ~~~----c~~L~~L~l~~c~~lt~---~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l 337 (482)
T KOG1947|consen 265 ASR----CPNLETLSLSNCSNLTD---EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSL 337 (482)
T ss_pred Hhh----CCCcceEccCCCCccch---hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccH
Confidence 322 78999999888876332 222334456888999999999875 2233446666665544443 33
Q ss_pred ccCC-------C-CCccEEEEeecCccccccccCCCCCCCCC-eEEccCCCCC-ccccccccccCCCCCcCCcccEEeee
Q 048758 665 VFSS-------P-HLVHAVNVREQAYFWRSETRLPQDIRSLN-RLQISRCPQL-LSLVTEEEHDQQQPELPCRLQFLELR 734 (777)
Q Consensus 665 ~~~~-------~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l-~~l~~~~~~~~~~~~l~~~L~~L~l~ 734 (777)
+... . ..+..+.+.+|..++........ ..... .+.+.+|+.+ .++.... .....++.|+++
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~-------~~~~~l~~L~l~ 409 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRL-------CRSDSLRVLNLS 409 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHh-------ccCCccceEecc
Confidence 3111 1 24555555555555544433333 22222 4566677666 2222111 111238999999
Q ss_pred cCCCCCCc--hhhcCCCCCccEEEecCCCCCccc
Q 048758 735 NCEGLTRL--PQALLTLSSLTEMRIYGCTSLVSF 766 (777)
Q Consensus 735 ~c~~l~~l--p~~~~~l~~L~~L~l~~c~~l~~l 766 (777)
.|...+.- -.....+.+++.+++.+|+.+..-
T Consensus 410 ~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 410 DCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cCccccccchHHHhhhhhccccCCccCcccccch
Confidence 98776532 111112677888888888777644
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00031 Score=67.54 Aligned_cols=98 Identities=20% Similarity=0.152 Sum_probs=59.9
Q ss_pred ceeEEeecCccCccccC--ccc-cCcCccCeeeccCCccc---ccchhhhccccCcEEeeCCCcC---ccccchhccccC
Q 048758 345 RLRVFSLRGYCNIFNLP--NEI-GNLKHLRCLNLSRTRIQ---ILPESINSLYNLHTILLEDCWK---LKKLCKDMGNLT 415 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp--~~i-~~l~~L~~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~~~---l~~lp~~~~~L~ 415 (777)
.+..|.+.++ .+...- ..| ..+++++.|||.+|.|+ ++-.-+.+++.|++|+++.|.. +..+| ..+.
T Consensus 46 a~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 46 ALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred chhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 3446666665 443321 223 36788999999999987 5555567899999999998832 22333 3566
Q ss_pred cccEEecCCcccc-cccCcccccccCCcccCc
Q 048758 416 KLRHLKNSNVHSL-EEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 416 ~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~~ 446 (777)
+|+.|-+++...- +.....+..++.+++|.+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 8888888876511 111222445555555543
No 60
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.99 E-value=0.013 Score=59.36 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=81.2
Q ss_pred hHHHHHHHhhcCCCCCCCCCHHHHHHHHHHH----h-CCCeEEEEEeCCCccchhchhhhccccC---CCCCCcEEEEEe
Q 048758 3 RISKSILNSVAKDQSNNDDDLNSLQVKLKER----L-SGKKFLLVLDDLWNENYNSWCTLSCPFG---AGASGSKIVVTH 74 (777)
Q Consensus 3 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~----L-~~~~~LlvLDdv~~~~~~~~~~~~~~~~---~~~~gs~iiiTT 74 (777)
++++.|...++.... ..+.......+.+. . .++++++|+||++.-....++.+..... ..+....|++|.
T Consensus 86 ~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g 163 (269)
T TIGR03015 86 DLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG 163 (269)
T ss_pred HHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC
Confidence 456667766654432 23333333344333 2 6788999999998765444554432211 122333456665
Q ss_pred ecHHHHhhcc----------cCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhc
Q 048758 75 RNQDVAATMR----------AVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLL 144 (777)
Q Consensus 75 R~~~v~~~~~----------~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 144 (777)
.. ....... ....+.+++++.+|..+++...+..........--.+..+.|++.++|.|..|..++..+
T Consensus 164 ~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 164 QP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 43 2221111 123578999999999998887753221100111123789999999999999998888665
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.92 E-value=2.9e-05 Score=83.24 Aligned_cols=108 Identities=24% Similarity=0.270 Sum_probs=73.1
Q ss_pred HHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchhcccc
Q 048758 336 LQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKDMGNL 414 (777)
Q Consensus 336 ~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~L 414 (777)
+...+.-++.|+.|||++| .+...- .+..|++|+.|||++|.+..+|.- ...+. |+.|.+++| .++.+ .++.+|
T Consensus 179 mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhh
Confidence 3344566778888888888 666654 577888888888888888777642 22333 888888888 66666 567888
Q ss_pred CcccEEecCCcccccccC--cccccccCCcccCcEEe
Q 048758 415 TKLRHLKNSNVHSLEEMP--KGFGKLTSLLTLGRFVV 449 (777)
Q Consensus 415 ~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~~~~~ 449 (777)
.+|+.||+++|- +.... ..++.|..|+.|.+.++
T Consensus 254 ksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 254 KSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCC
Confidence 888888888876 33221 12455666666665444
No 62
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.86 E-value=7.2e-05 Score=80.34 Aligned_cols=96 Identities=21% Similarity=0.178 Sum_probs=73.1
Q ss_pred CCCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCc
Q 048758 325 DFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKL 404 (777)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l 404 (777)
+++.|.+.... ++..++.|+.|||++| .+..+|.-=..-.+|+.|.+++|.++.+ ..+.+|++|+.||+++| .+
T Consensus 193 nLshNk~~~v~---~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll 266 (1096)
T KOG1859|consen 193 NLSHNKFTKVD---NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LL 266 (1096)
T ss_pred ccchhhhhhhH---HHHhcccccccccccc-hhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHh-hh
Confidence 55566554332 5788999999999999 7888885222223499999999999988 58899999999999998 44
Q ss_pred cccc--hhccccCcccEEecCCcc
Q 048758 405 KKLC--KDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 405 ~~lp--~~~~~L~~L~~L~l~~~~ 426 (777)
.... .-++.|..|+.|++.||.
T Consensus 267 ~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 267 SEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hcchhhhHHHHHHHHHHHhhcCCc
Confidence 3221 226778899999999998
No 63
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.83 E-value=0.00012 Score=81.40 Aligned_cols=231 Identities=23% Similarity=0.257 Sum_probs=129.8
Q ss_pred cCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeec-CC-CCCC--cccCCCCCCCeeEEEEeCCCCCCCC
Q 048758 489 LNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGY-SG-TKFP--IWLGDSSFSKLVQLKLEGCGKCTSL 564 (777)
Q Consensus 489 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~-~~~p--~~~~~~~l~~L~~L~L~~~~~~~~l 564 (777)
...+++|+.+.+..+...... .........+.|++|++.++ .. ...+ .......+++|+.|++.+|..+++.
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~ 259 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDD----SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI 259 (482)
T ss_pred HhhCchhhHhhhcccccCChh----hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch
Confidence 344788999988755432211 13344556789999999873 22 1111 1111225789999999999866543
Q ss_pred C--CC-CCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhh-hccccCCCCCCCCCccEEEEecC
Q 048758 565 P--SV-GQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEW-IPCGAGTLPRRLLLLETLDITSC 640 (777)
Q Consensus 565 ~--~~-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~l~~L~~L~l~~c 640 (777)
. .+ ..+++|++|.+.+|..++..+..... ..+++|+.|++++|..+.+- +. .+...+++|+.|.+..+
T Consensus 260 ~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~----~~~~~L~~L~l~~c~~~~d~~l~----~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 260 GLSALASRCPNLETLSLSNCSNLTDEGLVSIA----ERCPSLRELDLSGCHGLTDSGLE----ALLKNCPNLRELKLLSL 331 (482)
T ss_pred hHHHHHhhCCCcceEccCCCCccchhHHHHHH----HhcCcccEEeeecCccchHHHHH----HHHHhCcchhhhhhhhc
Confidence 3 22 33789999999999875544433222 23899999999998875331 11 11123555444443333
Q ss_pred ---CCcc-----------------cccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccC-CCCCCCCCe
Q 048758 641 ---DQLL-----------------VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRL-PQDIRSLNR 699 (777)
Q Consensus 641 ---~~l~-----------------~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~ 699 (777)
..+. .....++.|+.+.+..|. .. .....+.+.+|..++ ..... .....+++.
T Consensus 332 ~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~----~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~ 405 (482)
T KOG1947|consen 332 NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-IS----DLGLELSLRGCPNLT-ESLELRLCRSDSLRV 405 (482)
T ss_pred CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-cc----CcchHHHhcCCcccc-hHHHHHhccCCccce
Confidence 3231 112234445554444443 11 111145666776664 22222 122233999
Q ss_pred EEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCc
Q 048758 700 LQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRL 742 (777)
Q Consensus 700 L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~l 742 (777)
|+++.|...+.-...... .....++.+++.+|+.+..-
T Consensus 406 L~l~~~~~~t~~~l~~~~-----~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 406 LNLSDCRLVTDKGLRCLA-----DSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred EecccCccccccchHHHh-----hhhhccccCCccCcccccch
Confidence 999999766543222110 00257888999998877643
No 64
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.66 E-value=0.055 Score=58.22 Aligned_cols=227 Identities=13% Similarity=0.080 Sum_probs=125.2
Q ss_pred hHHHHHHHhhcCC-CCCCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCccc----hhchhhhccccCCCCCCcE--EEEE
Q 048758 3 RISKSILNSVAKD-QSNNDDDLNSLQVKLKERLS--GKKFLLVLDDLWNEN----YNSWCTLSCPFGAGASGSK--IVVT 73 (777)
Q Consensus 3 ~l~~~il~~l~~~-~~~~~~~~~~~~~~l~~~L~--~~~~LlvLDdv~~~~----~~~~~~~~~~~~~~~~gs~--iiiT 73 (777)
.+..+|++++.+. ......+.++..+.+.+.++ ++.++||||+++.-. ...+..+...+... .+++ ||.+
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i 179 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGI 179 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEE
Confidence 4567777877652 22122356777788888875 456899999996521 12333443322222 2333 6777
Q ss_pred eecHHHHhhcc-------cCCccccCCCChHhHHHHHHHhhcCC--CCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhc
Q 048758 74 HRNQDVAATMR-------AVSGKTLKELSDDDCLRVLIQHSLGA--RYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLL 144 (777)
Q Consensus 74 TR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 144 (777)
+.+..+..... ....+.+++++.++..+++..++... .....++.++.+++......|..+.|+.++-.+.
T Consensus 180 ~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 180 SSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAG 259 (394)
T ss_pred ECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 76655433321 12457899999999999998876321 1112223334444444444677888887765432
Q ss_pred C----C-C--CChhHHHHHHhccccccccCccCchhhHhhcccCCChhhHHHHhHhcCCCC--CceeCHHHHHHH--HH-
Q 048758 145 S----G-K--DDLNDWEFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFAYCSLFPK--DYEFEEEEIILL--WT- 212 (777)
Q Consensus 145 ~----~-~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~--~~~i~~~~l~~~--w~- 212 (777)
. + . -+.+....+..... .....-.+..||.+.|..+..++...+ ...+...++... .+
T Consensus 260 ~~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~ 329 (394)
T PRK00411 260 LIAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELC 329 (394)
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 1 1 1 13444544444321 122344678999988887776654321 123444444322 11
Q ss_pred -HCCCccCcCCCCcHHHHHHHHHHHHhhCcccccc
Q 048758 213 -AEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLS 246 (777)
Q Consensus 213 -~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~ 246 (777)
..|. .+ .-+....+++..|.+.++|+..
T Consensus 330 ~~~~~-~~-----~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 330 EELGY-EP-----RTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHcCC-Cc-----CcHHHHHHHHHHHHhcCCeEEE
Confidence 1222 11 1234567789999999999754
No 65
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.61 E-value=7.9e-05 Score=70.50 Aligned_cols=91 Identities=25% Similarity=0.225 Sum_probs=61.6
Q ss_pred HccCCceeEEeecCccCccc----cCccccCcCccCeeeccCCccc----ccc-------hhhhccccCcEEeeCCCcCc
Q 048758 340 LNHLPRLRVFSLRGYCNIFN----LPNEIGNLKHLRCLNLSRTRIQ----ILP-------ESINSLYNLHTILLEDCWKL 404 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~----lp~~i~~l~~L~~L~L~~~~i~----~lp-------~~i~~L~~L~~L~l~~~~~l 404 (777)
+.-+..+..++||||+.-++ +...|.+-.+|+.-+++.-... ++| +.+-++++|+..+++.|-.-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34488999999999965443 4556777888999888864221 333 34556788888888888444
Q ss_pred cccchh----ccccCcccEEecCCccccccc
Q 048758 405 KKLCKD----MGNLTKLRHLKNSNVHSLEEM 431 (777)
Q Consensus 405 ~~lp~~----~~~L~~L~~L~l~~~~~~~~~ 431 (777)
.+.|.. +++-+.|++|.+++|. +..+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 444433 5677788888888877 4443
No 66
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.39 E-value=0.003 Score=64.40 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=145.2
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHHhhcccCCccccCCCChH-hHHHHH
Q 048758 25 SLQVKLKERLSGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLKELSDD-DCLRVL 103 (777)
Q Consensus 25 ~~~~~l~~~L~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf 103 (777)
.....+..+..++|.++|+||..+- ...-..+...+...++.-+|+.|+|+.. ...++..+.+++|+.. ++.++|
T Consensus 76 ~~~~~~~~~~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~---l~~ge~~~~~~~L~~~d~a~~lf 151 (414)
T COG3903 76 SAVDTLVRRIGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAI---LVAGEVHRRVPSLSLFDEAIELF 151 (414)
T ss_pred HHHHHHHHHHhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhh---cccccccccCCccccCCchhHHH
Confidence 3455778888999999999998332 1233344455666667778999998863 3345677889998854 899999
Q ss_pred HHhhcCCCCC-CCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHHHhccccc-------cccCccCchhhH
Q 048758 104 IQHSLGARYF-NIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFVLNTNIWD-------LREDKCDILPTL 175 (777)
Q Consensus 104 ~~~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~~~~~~~~-------~~~~~~~~~~~l 175 (777)
...+...... -....-......|++..+|.|++|...++..+.-. ...-..-+...... -...++.....+
T Consensus 152 ~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~-~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl 230 (414)
T COG3903 152 VCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLS-PDEIAAGLRDRFRLLTGGARLAVLRQQTLRASL 230 (414)
T ss_pred HHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcC-HHHHHHHHhhHHHHHhcccccchhHHHhccchh
Confidence 9887544332 22233447788999999999999999998877653 12222222111111 111235678889
Q ss_pred hhcccCCChhhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHHHHHHHHHHHhhCcccccccC-CCCcEE
Q 048758 176 RVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSSK-DTSRFV 254 (777)
Q Consensus 176 ~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~~~-~~~~~~ 254 (777)
.+||.-|..-++--|-.++.|...+.... ..|.+-|--.. .....+-..+-.+++++++..... ....+.
T Consensus 231 ~ws~~lLtgwe~~~~~rLa~~~g~f~~~l----~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~R 301 (414)
T COG3903 231 DWSYALLTGWERALFGRLAVFVGGFDLGL----ALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYR 301 (414)
T ss_pred hhhhHhhhhHHHHHhcchhhhhhhhcccH----HHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHH
Confidence 99999999999999999999987765542 33444333211 111223333566788888754332 122344
Q ss_pred ecHHHHHHHHHhhc
Q 048758 255 MHDLINDLARWAAG 268 (777)
Q Consensus 255 mhd~i~~~~~~~~~ 268 (777)
.-+-.+.++..+..
T Consensus 302 l~eT~r~YalaeL~ 315 (414)
T COG3903 302 LLETGRRYALAELH 315 (414)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554443
No 67
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.38 E-value=0.023 Score=63.35 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=132.2
Q ss_pred CCHHHHHHHHHHHhC--CCeEEEEEeCCCccchhchhhhccc-cCCCCCCcEEEEEeecHHHHhhcc---cCCcccc---
Q 048758 21 DDLNSLQVKLKERLS--GKKFLLVLDDLWNENYNSWCTLSCP-FGAGASGSKIVVTHRNQDVAATMR---AVSGKTL--- 91 (777)
Q Consensus 21 ~~~~~~~~~l~~~L~--~~~~LlvLDdv~~~~~~~~~~~~~~-~~~~~~gs~iiiTTR~~~v~~~~~---~~~~~~l--- 91 (777)
.+.......+..-+. .++..+||||..-........-... +....++-.+|||||...-+.-.. .+...++
T Consensus 111 ~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~ 190 (894)
T COG2909 111 VSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSE 190 (894)
T ss_pred ccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChH
Confidence 344555666666554 4589999999743322222222222 223345788999999975332211 1122232
Q ss_pred -CCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHHHhccccccccCccC
Q 048758 92 -KELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFVLNTNIWDLREDKCD 170 (777)
Q Consensus 92 -~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~ 170 (777)
=.++.+|+-++|.....- +--..-++.+.+..+|++-|+..++=++++..+.+.--..+. +...-
T Consensus 191 ~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls-------G~~~~ 256 (894)
T COG2909 191 ELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS-------GAASH 256 (894)
T ss_pred hhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc-------chHHH
Confidence 347889999999876511 111256888999999999999999988884433222211111 00001
Q ss_pred ch-hhHhhcccCCChhhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHHHHHHHHHHHhhCcccccc-cC
Q 048758 171 IL-PTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLS-SK 248 (777)
Q Consensus 171 ~~-~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~-~~ 248 (777)
+. -...=-++.||++.|..++-+|+++.= -..++....+ ++.+..++++|.++++.-.. ++
T Consensus 257 l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd 319 (894)
T COG2909 257 LSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNALTG-------------EENGQAMLEELERRGLFLQRLDD 319 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecC
Confidence 11 112234689999999999999998531 1223322211 23467789999999988654 33
Q ss_pred CCCcEEecHHHHHHHHHhhcc
Q 048758 249 DTSRFVMHDLINDLARWAAGE 269 (777)
Q Consensus 249 ~~~~~~mhd~i~~~~~~~~~~ 269 (777)
...-|..|.++.++.+.....
T Consensus 320 ~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 320 EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCceeehhHHHHHHHHhhhcc
Confidence 456789999999998765443
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.26 E-value=0.0056 Score=55.90 Aligned_cols=99 Identities=25% Similarity=0.303 Sum_probs=53.4
Q ss_pred ceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhh-ccccCcEEeeCCCcCccccch--hccccCcccEEe
Q 048758 345 RLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESIN-SLYNLHTILLEDCWKLKKLCK--DMGNLTKLRHLK 421 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~-~L~~L~~L~l~~~~~l~~lp~--~~~~L~~L~~L~ 421 (777)
....+||+.| .+..++. +..+..|.+|.+.+|+|+.+.+.+. .+++|+.|.+.+| ++.++.. .+..+++|++|.
T Consensus 43 ~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 3455666665 4444432 5556666666776666666654444 3455666666666 5544422 244566666666
Q ss_pred cCCcccccccCc----ccccccCCcccCcE
Q 048758 422 NSNVHSLEEMPK----GFGKLTSLLTLGRF 447 (777)
Q Consensus 422 l~~~~~~~~~p~----~~~~l~~L~~L~~~ 447 (777)
+-+|. .+.-+. -+..+++|++|+..
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehh
Confidence 66655 222221 13445555555443
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.22 E-value=0.0016 Score=61.97 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=49.4
Q ss_pred CCCCchhhHHHH---HHHHccCCceeEEeecCccCccc----cC-------ccccCcCccCeeeccCCccc-ccc----h
Q 048758 325 DFGDNYLAWSAL---QMLLNHLPRLRVFSLRGYCNIFN----LP-------NEIGNLKHLRCLNLSRTRIQ-ILP----E 385 (777)
Q Consensus 325 ~~~~~~~~~~~~---~~~~~~l~~L~~L~L~~~~~l~~----lp-------~~i~~l~~L~~L~L~~~~i~-~lp----~ 385 (777)
++++|++..... ...+.+-++|++.+++.- .... +| ..+-+|++|+..+|+.|.+. ..| .
T Consensus 36 dLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d 114 (388)
T COG5238 36 DLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGD 114 (388)
T ss_pred eccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHH
Confidence 566666644333 334556677888887753 2221 22 33567888888888888765 333 3
Q ss_pred hhhccccCcEEeeCCCcCcc
Q 048758 386 SINSLYNLHTILLEDCWKLK 405 (777)
Q Consensus 386 ~i~~L~~L~~L~l~~~~~l~ 405 (777)
-|+.-+.|.+|.+++| .+.
T Consensus 115 ~is~~t~l~HL~l~Nn-GlG 133 (388)
T COG5238 115 LISSSTDLVHLKLNNN-GLG 133 (388)
T ss_pred HHhcCCCceeEEeecC-CCC
Confidence 4666778888888888 443
No 70
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.02 E-value=0.84 Score=48.46 Aligned_cols=229 Identities=12% Similarity=0.082 Sum_probs=121.7
Q ss_pred hHHHHHHHhhc---CCCCCCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCccc---hhchhhhccc--cCCC-CCCcEEE
Q 048758 3 RISKSILNSVA---KDQSNNDDDLNSLQVKLKERLS--GKKFLLVLDDLWNEN---YNSWCTLSCP--FGAG-ASGSKIV 71 (777)
Q Consensus 3 ~l~~~il~~l~---~~~~~~~~~~~~~~~~l~~~L~--~~~~LlvLDdv~~~~---~~~~~~~~~~--~~~~-~~gs~ii 71 (777)
.+..+|+..+. ...+....+.++..+.+.+.+. +++++||||+++.-. ...+..+... .... +....+|
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI 169 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVI 169 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEE
Confidence 45666777773 1111112244556666777764 567899999996531 1112222221 1111 1334566
Q ss_pred EEeecHHHHhhcc-------cCCccccCCCChHhHHHHHHHhhc-CCCCCCCChhHHHHHHHHHHHcCCch-hHHHHHHh
Q 048758 72 VTHRNQDVAATMR-------AVSGKTLKELSDDDCLRVLIQHSL-GARYFNIPQSLKEVAEKIAKKCKGLP-LAAKTLGG 142 (777)
Q Consensus 72 iTTR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~-~~~~~~~~~~~~~~~~~i~~~c~glP-lal~~~~~ 142 (777)
.+|.+........ ....+.+++.+.+|..+++..++- ........++..+.+.+++....|.| .|+.++-.
T Consensus 170 ~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~ 249 (365)
T TIGR02928 170 GISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRV 249 (365)
T ss_pred EEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 6665554332221 124588999999999999998863 11222233444456666777777887 44443322
Q ss_pred hc----CC---CCChhHHHHHHhccccccccCccCchhhHhhcccCCChhhHHHHhHhcCCC--CCceeCHHHHHHHH--
Q 048758 143 LL----SG---KDDLNDWEFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFAYCSLFP--KDYEFEEEEIILLW-- 211 (777)
Q Consensus 143 ~l----~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~--~~~~i~~~~l~~~w-- 211 (777)
+. .+ .-+.+..+.+..... .....-....||.+.|..+..++... ++..+...++...+
T Consensus 250 a~~~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 250 AGEIAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 21 11 122333333333221 12233456788888887666655322 33345555555422
Q ss_pred -HH-CCCccCcCCCCcHHHHHHHHHHHHhhCccccccc
Q 048758 212 -TA-EGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSS 247 (777)
Q Consensus 212 -~~-~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~~ 247 (777)
.. .| +. ...+....+++..|...++++...
T Consensus 320 ~~~~~~-~~-----~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 320 VCEDIG-VD-----PLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred HHHhcC-CC-----CCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11 12 12 233567788899999999998753
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.01 E-value=0.004 Score=59.41 Aligned_cols=104 Identities=26% Similarity=0.282 Sum_probs=58.2
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCC--ccc-ccchhhhccccCcEEeeCCCcCccccc--hhccccCcc
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRT--RIQ-ILPESINSLYNLHTILLEDCWKLKKLC--KDMGNLTKL 417 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~~L~~L 417 (777)
+..|..|++.+. .++.+- .+-.|++|++|.++.| ++. .++....++++|++|++++| .++.+. ..+.++.+|
T Consensus 42 ~~~le~ls~~n~-gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhcc-ceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 334444444433 333321 2445677888888777 444 55555556688888888887 444321 125566777
Q ss_pred cEEecCCcccccccC----cccccccCCcccCcEEec
Q 048758 418 RHLKNSNVHSLEEMP----KGFGKLTSLLTLGRFVVG 450 (777)
Q Consensus 418 ~~L~l~~~~~~~~~p----~~~~~l~~L~~L~~~~~~ 450 (777)
..|++..|... .+- ..+.-+++|+.|+.....
T Consensus 119 ~~Ldl~n~~~~-~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVT-NLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCcc-ccccHHHHHHHHhhhhccccccccC
Confidence 77777777622 221 124456677777655443
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00049 Score=65.57 Aligned_cols=101 Identities=20% Similarity=0.243 Sum_probs=51.2
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccch--hccccCcccEE
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCK--DMGNLTKLRHL 420 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~~~~L~~L~~L 420 (777)
+.+.+.|++.|| .+.++. .+.+++.|++|.|+-|+|+.+ ..+..+++|+.|.|+.| .+..+-+ -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 334455555555 444442 234555666666666655555 34455566666666655 3333321 14556666666
Q ss_pred ecCCcccccccCcc-----cccccCCcccCcE
Q 048758 421 KNSNVHSLEEMPKG-----FGKLTSLLTLGRF 447 (777)
Q Consensus 421 ~l~~~~~~~~~p~~-----~~~l~~L~~L~~~ 447 (777)
.+..|.-...-+.. +.-|++|++|+..
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 66655433333322 3445666666443
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.01 E-value=0.0031 Score=35.50 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=7.5
Q ss_pred cCeeeccCCcccccchh
Q 048758 370 LRCLNLSRTRIQILPES 386 (777)
Q Consensus 370 L~~L~L~~~~i~~lp~~ 386 (777)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44444444444444443
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.36 E-value=0.0068 Score=57.89 Aligned_cols=86 Identities=27% Similarity=0.296 Sum_probs=61.0
Q ss_pred HccCCceeEEeecCc--cCccccCccccCcCccCeeeccCCccccc--chhhhccccCcEEeeCCCcCccccc----hhc
Q 048758 340 LNHLPRLRVFSLRGY--CNIFNLPNEIGNLKHLRCLNLSRTRIQIL--PESINSLYNLHTILLEDCWKLKKLC----KDM 411 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~lp----~~~ 411 (777)
|..+++|+.|.++.| .....++....++++|++|++++|+|..+ -.....+.+|..||+..|.... +- ..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 566788999999988 33444555456779999999999987743 2346678889999999984332 31 225
Q ss_pred cccCcccEEecCCcc
Q 048758 412 GNLTKLRHLKNSNVH 426 (777)
Q Consensus 412 ~~L~~L~~L~l~~~~ 426 (777)
.-+++|++|+-....
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 668889988766554
No 75
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.09 E-value=0.024 Score=51.89 Aligned_cols=85 Identities=27% Similarity=0.323 Sum_probs=67.2
Q ss_pred HccCCceeEEeecCccCccccCcccc-CcCccCeeeccCCcccccc--hhhhccccCcEEeeCCCcCccccc----hhcc
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIG-NLKHLRCLNLSRTRIQILP--ESINSLYNLHTILLEDCWKLKKLC----KDMG 412 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~-~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp----~~~~ 412 (777)
|..++.|.+|.|..| .+..+-..+. -+++|..|.|.+|+|.++. ..+..+++|++|.+-+| .+..-. -.+.
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N-pv~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN-PVEHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC-chhcccCceeEEEE
Confidence 788999999999988 7777766664 5678999999999988663 34667899999999988 444332 2377
Q ss_pred ccCcccEEecCCcc
Q 048758 413 NLTKLRHLKNSNVH 426 (777)
Q Consensus 413 ~L~~L~~L~l~~~~ 426 (777)
++++|+.||..+..
T Consensus 138 klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 138 KLPSLRTLDFQKVT 151 (233)
T ss_pred ecCcceEeehhhhh
Confidence 89999999998765
No 76
>PF05729 NACHT: NACHT domain
Probab=94.99 E-value=0.041 Score=50.75 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=49.6
Q ss_pred CCCeEEEEEeCCCccchhc-------hhh-hccccCC-CCCCcEEEEEeecHHH---HhhcccCCccccCCCChHhHHHH
Q 048758 35 SGKKFLLVLDDLWNENYNS-------WCT-LSCPFGA-GASGSKIVVTHRNQDV---AATMRAVSGKTLKELSDDDCLRV 102 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~~~~~-------~~~-~~~~~~~-~~~gs~iiiTTR~~~v---~~~~~~~~~~~l~~L~~~ea~~L 102 (777)
+.++++||+|++++-.... +.. +...+.. ..++++++||+|.... .........++++++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 5789999999996543211 111 2222222 3568999999999876 23333445799999999999998
Q ss_pred HHHhh
Q 048758 103 LIQHS 107 (777)
Q Consensus 103 f~~~~ 107 (777)
+.++.
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 86653
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.005 Score=58.92 Aligned_cols=82 Identities=26% Similarity=0.323 Sum_probs=62.8
Q ss_pred HHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccc--hhhhccccCcEEeeCCCcCccccch-----hc
Q 048758 339 LLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP--ESINSLYNLHTILLEDCWKLKKLCK-----DM 411 (777)
Q Consensus 339 ~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~-----~~ 411 (777)
+..+|+.|+||.|+-| .++.+-. +..|++|+.|.|+.|.|..+- .-+.+|++|++|.|..|.-...-+. .+
T Consensus 36 ic~kMp~lEVLsLSvN-kIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVN-KISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHhcccceeEEeecc-ccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 3678999999999998 7777643 889999999999999998664 3577899999999987633322221 25
Q ss_pred cccCcccEEec
Q 048758 412 GNLTKLRHLKN 422 (777)
Q Consensus 412 ~~L~~L~~L~l 422 (777)
.-|++|+.||-
T Consensus 114 R~LPnLkKLDn 124 (388)
T KOG2123|consen 114 RVLPNLKKLDN 124 (388)
T ss_pred HHcccchhccC
Confidence 56788888764
No 78
>PRK06893 DNA replication initiation factor; Validated
Probab=94.79 E-value=0.054 Score=52.99 Aligned_cols=97 Identities=20% Similarity=0.201 Sum_probs=61.3
Q ss_pred EEEEEeCCCccc-hhchh-hhccccCCC-CCCcEEEEE-eec---------HHHHhhcccCCccccCCCChHhHHHHHHH
Q 048758 39 FLLVLDDLWNEN-YNSWC-TLSCPFGAG-ASGSKIVVT-HRN---------QDVAATMRAVSGKTLKELSDDDCLRVLIQ 105 (777)
Q Consensus 39 ~LlvLDdv~~~~-~~~~~-~~~~~~~~~-~~gs~iiiT-TR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 105 (777)
-+|||||+|... ..+|+ .+...+... ..|..+||| ++. +++..++....+++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998632 22343 222222221 235566554 443 46666666667899999999999999999
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 048758 106 HSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKT 139 (777)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 139 (777)
.++...- ..+ ++...-|++.+.|-.-++..
T Consensus 173 ~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~ 202 (229)
T PRK06893 173 NAYQRGI-ELS---DEVANFLLKRLDRDMHTLFD 202 (229)
T ss_pred HHHHcCC-CCC---HHHHHHHHHhccCCHHHHHH
Confidence 9865432 222 26677788888776654433
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.71 E-value=0.02 Score=32.19 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=13.7
Q ss_pred cCcEEeeCCCcCccccchhccc
Q 048758 392 NLHTILLEDCWKLKKLCKDMGN 413 (777)
Q Consensus 392 ~L~~L~l~~~~~l~~lp~~~~~ 413 (777)
+|++||+++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777777 66677665543
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.51 E-value=0.35 Score=49.90 Aligned_cols=156 Identities=14% Similarity=0.060 Sum_probs=86.1
Q ss_pred CcEEEEEeecHHHHhhcc--cCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhc
Q 048758 67 GSKIVVTHRNQDVAATMR--AVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLL 144 (777)
Q Consensus 67 gs~iiiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 144 (777)
.+-|..||+...+..... ....+.+++++.+|..+++...+..... ..+ .+.+..|++.|+|.|-.+..++..+
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~---~~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIE---PEAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcC---HHHHHHHHHHhCCCcchHHHHHHHH
Confidence 445556777644333211 1345789999999999999988753322 222 2567889999999996655554322
Q ss_pred CCCCChhHHHHHHhcccccccc-CccCchhhHhhcccCCChhhHHHHh-HhcCCCCCceeCHHHHHHHHHHCCCccCcCC
Q 048758 145 SGKDDLNDWEFVLNTNIWDLRE-DKCDILPTLRVSYHFLPPQLKRCFA-YCSLFPKDYEFEEEEIILLWTAEGFLDQEYS 222 (777)
Q Consensus 145 ~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~~sy~~L~~~~k~~fl-~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~ 222 (777)
|..+.......... ........+...|..++.+.+..+. .++.+..+ .+....+...+ |.
T Consensus 206 --------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~------ 267 (305)
T TIGR00635 206 --------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE------ 267 (305)
T ss_pred --------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC------
Confidence 11110000000000 0011222256678889888887776 44666433 34443333322 11
Q ss_pred CCcHHHHHHHHHH-HHhhCccccccc
Q 048758 223 GRKMEDLGREFVQ-ELHSRSLFQLSS 247 (777)
Q Consensus 223 ~~~~~d~~~~~l~-~L~~~sLl~~~~ 247 (777)
....+..+++ .|+++++++...
T Consensus 268 ---~~~~~~~~~e~~Li~~~li~~~~ 290 (305)
T TIGR00635 268 ---DADTIEDVYEPYLLQIGFLQRTP 290 (305)
T ss_pred ---CcchHHHhhhHHHHHcCCcccCC
Confidence 1224555577 699999997543
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.39 E-value=0.0069 Score=55.39 Aligned_cols=68 Identities=26% Similarity=0.426 Sum_probs=46.3
Q ss_pred CCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCch-hhcCCCCCccEEEecCCCCCc
Q 048758 692 QDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLP-QALLTLSSLTEMRIYGCTSLV 764 (777)
Q Consensus 692 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~ 764 (777)
.++++++.|.+.+|..+..-..+. .+.+.++|+.|+|++|+.+++-- ..+..+++|+.|.+++-+.+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~-----l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLER-----LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred hccchhhhheeccccchhhHHHHH-----hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 356778888888887776543222 23344888888888888888531 445677888888888766554
No 82
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.20 E-value=0.14 Score=53.34 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=87.2
Q ss_pred cEEEEEeecHHHHhhcc--cCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcC
Q 048758 68 SKIVVTHRNQDVAATMR--AVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLS 145 (777)
Q Consensus 68 s~iiiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~ 145 (777)
+-|..|||...+..... ....+.+++++.++..+++...+..... ..+ .+.+..|++.|+|.|-.+..+...+
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~---~~~~~~ia~~~~G~pR~a~~~l~~~- 226 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EID---EEGALEIARRSRGTPRIANRLLRRV- 226 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcC---HHHHHHHHHHcCCCchHHHHHHHHH-
Confidence 44556766443332221 1246899999999999999988754322 222 2678899999999995444443322
Q ss_pred CCCChhHHHHHHhcccccccc-CccCchhhHhhcccCCChhhHHHHh-HhcCCCCCceeCHHHHHHHHHHCCCccCcCCC
Q 048758 146 GKDDLNDWEFVLNTNIWDLRE-DKCDILPTLRVSYHFLPPQLKRCFA-YCSLFPKDYEFEEEEIILLWTAEGFLDQEYSG 223 (777)
Q Consensus 146 ~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~l~~sy~~L~~~~k~~fl-~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~ 223 (777)
..|....... .... .-......+...+..|++..+..+. ....|..+ .+..+.+...+ |
T Consensus 227 -----~~~a~~~~~~--~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-------- 287 (328)
T PRK00080 227 -----RDFAQVKGDG--VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G-------- 287 (328)
T ss_pred -----HHHHHHcCCC--CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--------
Confidence 1222111100 0000 0122334456778888888877775 55666554 45544443322 0
Q ss_pred CcHHHHHHHHHH-HHhhCccccccc
Q 048758 224 RKMEDLGREFVQ-ELHSRSLFQLSS 247 (777)
Q Consensus 224 ~~~~d~~~~~l~-~L~~~sLl~~~~ 247 (777)
...+.+.+.++ .|++.++++...
T Consensus 288 -~~~~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 288 -EERDTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred -CCcchHHHHhhHHHHHcCCcccCC
Confidence 11223444566 899999997544
No 83
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.87 E-value=0.044 Score=28.49 Aligned_cols=15 Identities=47% Similarity=0.596 Sum_probs=5.8
Q ss_pred cccEEeeecCCCCCCc
Q 048758 727 RLQFLELRNCEGLTRL 742 (777)
Q Consensus 727 ~L~~L~l~~c~~l~~l 742 (777)
+|++|++++|. ++++
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 34555555543 4444
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.85 E-value=0.036 Score=28.82 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=5.1
Q ss_pred ccCeeeccCCccccc
Q 048758 369 HLRCLNLSRTRIQIL 383 (777)
Q Consensus 369 ~L~~L~L~~~~i~~l 383 (777)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444433
No 85
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.77 E-value=0.26 Score=48.34 Aligned_cols=113 Identities=21% Similarity=0.210 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhC--CCeEEEEEeCCCccc------hhchhhhccccCC--CCCCcEEEEEeecHHHHhh--------ccc
Q 048758 24 NSLQVKLKERLS--GKKFLLVLDDLWNEN------YNSWCTLSCPFGA--GASGSKIVVTHRNQDVAAT--------MRA 85 (777)
Q Consensus 24 ~~~~~~l~~~L~--~~~~LlvLDdv~~~~------~~~~~~~~~~~~~--~~~gs~iiiTTR~~~v~~~--------~~~ 85 (777)
......+.+.++ +++++||+||+..-. ......+...+.. ....-.+|+++....+... .+.
T Consensus 103 ~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~ 182 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGR 182 (234)
T ss_dssp G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT-
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccc
Confidence 344445555553 345999999994432 0111122212221 1234455566555554433 112
Q ss_pred CCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 048758 86 VSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKT 139 (777)
Q Consensus 86 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 139 (777)
...+.+++++.+++++++...+-.. . .. +.-.+..++|...+||.|..|..
T Consensus 183 ~~~~~l~~l~~~e~~~~~~~~~~~~-~-~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 183 FSHIELKPLSKEEAREFLKELFKEL-I-KL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp --EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHHH
T ss_pred cceEEEeeCCHHHHHHHHHHHHHHh-h-cc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 2348999999999999998875332 1 11 11236679999999999988764
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.41 E-value=0.0037 Score=58.11 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=73.5
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
+..+...++||++.| .+-.+-..++.++.|..|+++.+.+.-+|..++++..+..++++.| .....|.+.++++.+++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 455778899999988 6666777788888899999999999999999999999999998888 78888999999999999
Q ss_pred EecCCccc
Q 048758 420 LKNSNVHS 427 (777)
Q Consensus 420 L~l~~~~~ 427 (777)
++..++..
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99888773
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.18 E-value=1.2 Score=46.79 Aligned_cols=110 Identities=16% Similarity=0.161 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhC-----CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHH-hhcc-cCCccccCCCC
Q 048758 23 LNSLQVKLKERLS-----GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA-ATMR-AVSGKTLKELS 95 (777)
Q Consensus 23 ~~~~~~~l~~~L~-----~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~-~~~~-~~~~~~l~~L~ 95 (777)
+++ ++.+.+.+. +++-++|+||+........+.+...+..-..++.+|++|.+.+.. .... .-..+.+.+++
T Consensus 123 Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~ 201 (365)
T PRK07471 123 VDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLA 201 (365)
T ss_pred HHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCC
Confidence 344 444445543 456689999997766666666665555544566777777766432 2222 23578999999
Q ss_pred hHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 96 DDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 96 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
.++..+.+...... ... .....++..++|.|.....+.
T Consensus 202 ~~~i~~~L~~~~~~-----~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 202 PEDVIDALAAAGPD-----LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred HHHHHHHHHHhccc-----CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 99999999876421 111 222678899999997554443
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.035 Score=50.91 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=9.9
Q ss_pred CCCCCccEEEEcCCCCcc
Q 048758 648 QCLPALSELQIDGCKRVV 665 (777)
Q Consensus 648 ~~l~~L~~L~l~~~~~l~ 665 (777)
..+++++.|.+.+|..+.
T Consensus 122 ~~l~~i~~l~l~~ck~~d 139 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFD 139 (221)
T ss_pred hccchhhhheeccccchh
Confidence 345556666666665443
No 89
>COG3899 Predicted ATPase [General function prediction only]
Probab=89.49 E-value=2.8 Score=49.52 Aligned_cols=168 Identities=16% Similarity=0.160 Sum_probs=99.4
Q ss_pred CCCeEEEEEeCCCccchhchhhhccccCCCC----CCcEEEEEeecHHHHh----hcccCCccccCCCChHhHHHHHHHh
Q 048758 35 SGKKFLLVLDDLWNENYNSWCTLSCPFGAGA----SGSKIVVTHRNQDVAA----TMRAVSGKTLKELSDDDCLRVLIQH 106 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~----~gs~iiiTTR~~~v~~----~~~~~~~~~l~~L~~~ea~~Lf~~~ 106 (777)
+.|+..+|+||+...+...+.-+........ ....|..+........ ....-..+.+.||+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 4569999999994433233222222111111 1123333333322211 2123367999999999999999877
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCC------CChhHHHHHHhccccccccCccCchhhHhhccc
Q 048758 107 SLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGK------DDLNDWEFVLNTNIWDLREDKCDILPTLRVSYH 180 (777)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~ 180 (777)
...... ...+..+.|+++.+|.|+.+.-+-+++... .+...|+.=..... . ..--+.+...+..-.+
T Consensus 232 l~~~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~-~-~~~~~~vv~~l~~rl~ 304 (849)
T COG3899 232 LGCTKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG-I-LATTDAVVEFLAARLQ 304 (849)
T ss_pred hCCccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC-C-chhhHHHHHHHHHHHh
Confidence 533222 223788999999999999999888888774 22334432211110 0 0011224455778889
Q ss_pred CCChhhHHHHhHhcCCCCCceeCHHHHHHHH
Q 048758 181 FLPPQLKRCFAYCSLFPKDYEFEEEEIILLW 211 (777)
Q Consensus 181 ~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w 211 (777)
.||+..|..+-..||+-.. ++...+...+
T Consensus 305 kL~~~t~~Vl~~AA~iG~~--F~l~~La~l~ 333 (849)
T COG3899 305 KLPGTTREVLKAAACIGNR--FDLDTLAALA 333 (849)
T ss_pred cCCHHHHHHHHHHHHhCcc--CCHHHHHHHH
Confidence 9999999999999999544 4444444433
No 90
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.21 E-value=0.3 Score=28.69 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=11.5
Q ss_pred CccCeeeccCCcccccchh
Q 048758 368 KHLRCLNLSRTRIQILPES 386 (777)
Q Consensus 368 ~~L~~L~L~~~~i~~lp~~ 386 (777)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 91
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.21 E-value=0.3 Score=28.69 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=11.5
Q ss_pred CccCeeeccCCcccccchh
Q 048758 368 KHLRCLNLSRTRIQILPES 386 (777)
Q Consensus 368 ~~L~~L~L~~~~i~~lp~~ 386 (777)
++|++|+|++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666554
No 92
>PF13173 AAA_14: AAA domain
Probab=89.21 E-value=0.5 Score=41.29 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=49.0
Q ss_pred HHHHHHhCCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHHhhc-c-----cCCccccCCCChHh
Q 048758 28 VKLKERLSGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATM-R-----AVSGKTLKELSDDD 98 (777)
Q Consensus 28 ~~l~~~L~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~-~-----~~~~~~l~~L~~~e 98 (777)
+.+.+....++.+|+||+| ....+|......+-+.++..+|++|+........- . -...++|.||+..|
T Consensus 52 ~~~~~~~~~~~~~i~iDEi--q~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEI--QYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHhhccCCcEEEEehh--hhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 4455554557899999999 44467777777777666778999999988776431 1 12357899998776
No 93
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.68 E-value=2.9 Score=39.41 Aligned_cols=90 Identities=18% Similarity=0.229 Sum_probs=61.0
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+.+-++|+||+..-.....+.+...+.+..+.+.+|++|++.. +..... ....+++.+++.++..+.+....
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~g------ 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQG------ 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHcC------
Confidence 4566899999966544455666666655555677777776542 222222 22579999999999888887761
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
.. .+.+..+++.++|.|.
T Consensus 169 -i~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPG 186 (188)
T ss_pred -CC---HHHHHHHHHHcCCCcc
Confidence 11 2668899999999874
No 94
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=88.38 E-value=2.7 Score=43.37 Aligned_cols=97 Identities=13% Similarity=0.136 Sum_probs=65.7
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHHh-hc-ccCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA-TM-RAVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++=++|+||++......++.+...+.+-..++.+|++|.+.+..- .. +-...+.+.+++.++..+.+.....+
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~---- 167 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYND---- 167 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhcC----
Confidence 4455777888866656677888877777777899998887765321 11 12357899999999988777554311
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
.. .+.+..++..++|.|..+...
T Consensus 168 -~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 168 -IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred -CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 144778889999998655433
No 95
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=88.18 E-value=18 Score=42.07 Aligned_cols=228 Identities=12% Similarity=0.088 Sum_probs=112.1
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhC---CCeEEEEEeCCCccc---hhchhhhccccCCCCCCcEEEE--Eee
Q 048758 4 ISKSILNSVAKDQSNNDDDLNSLQVKLKERLS---GKKFLLVLDDLWNEN---YNSWCTLSCPFGAGASGSKIVV--THR 75 (777)
Q Consensus 4 l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~---~~~~LlvLDdv~~~~---~~~~~~~~~~~~~~~~gs~iii--TTR 75 (777)
+.+.|..+|.+..+....+..+..+.+.+.+. +...+||||+|+.-. ...+..+... + ...+++|+| +|.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-~-~~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-P-TKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-h-hccCCeEEEEEecC
Confidence 44555666643333223344555666666652 224599999995421 1122222221 1 124556555 333
Q ss_pred cHHH--------HhhcccCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCC
Q 048758 76 NQDV--------AATMRAVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGK 147 (777)
Q Consensus 76 ~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~ 147 (777)
+.+. ..++. ...+..+|.+.++-.+++..++-.......+..++-+|+.++...|..-.||.++-.+...+
T Consensus 911 dlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEik 989 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENK 989 (1164)
T ss_pred chhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhc
Confidence 3222 22222 23467799999999999999985432222334454555555555666778887776665432
Q ss_pred C----ChhHHHHHHhccccccccCccCchhhHhhcccCCChhhHHHHhHhcCCCC---CceeCHHHHHHHH----HHCCC
Q 048758 148 D----DLNDWEFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFAYCSLFPK---DYEFEEEEIILLW----TAEGF 216 (777)
Q Consensus 148 ~----~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~---~~~i~~~~l~~~w----~~~g~ 216 (777)
. ..+.-+.+.+... ...+.-....||.+.|-.++.+....+ ...+....+.... ...|-
T Consensus 990 egskVT~eHVrkAleeiE----------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk 1059 (1164)
T PTZ00112 990 RGQKIVPRDITEATNQLF----------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK 1059 (1164)
T ss_pred CCCccCHHHHHHHHHHHH----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh
Confidence 1 1122222222111 111223346788877766654443222 1124333332211 11111
Q ss_pred ccCcCCCCcHHHHHHHHHHHHhhCccccccc
Q 048758 217 LDQEYSGRKMEDLGREFVQELHSRSLFQLSS 247 (777)
Q Consensus 217 i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~~ 247 (777)
..+ ....-+ ...+++.+|...++|....
T Consensus 1060 ~iG--v~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1060 YIG--MCSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred hcC--CCCcHH-HHHHHHHHHHhcCeEEecC
Confidence 001 111223 7788888888888886643
No 96
>PRK09087 hypothetical protein; Validated
Probab=87.47 E-value=2.1 Score=41.65 Aligned_cols=94 Identities=14% Similarity=0.171 Sum_probs=59.3
Q ss_pred EEEEEeCCCcc--chhchhhhccccCCCCCCcEEEEEeec---------HHHHhhcccCCccccCCCChHhHHHHHHHhh
Q 048758 39 FLLVLDDLWNE--NYNSWCTLSCPFGAGASGSKIVVTHRN---------QDVAATMRAVSGKTLKELSDDDCLRVLIQHS 107 (777)
Q Consensus 39 ~LlvLDdv~~~--~~~~~~~~~~~~~~~~~gs~iiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 107 (777)
-+|++||+... ....+..+..... ..|..||+|++. +++..++....+++++++++++-.+++.+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 37888999432 1223333332222 236679998873 4455555666789999999999999999887
Q ss_pred cCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 048758 108 LGARYFNIPQSLKEVAEKIAKKCKGLPLAAK 138 (777)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~c~glPlal~ 138 (777)
-... ...+ +++..-|++.+.|..-++.
T Consensus 167 ~~~~-~~l~---~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 167 ADRQ-LYVD---PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHcC-CCCC---HHHHHHHHHHhhhhHHHHH
Confidence 4322 1222 2566667777776665554
No 97
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.36 E-value=1.4 Score=43.06 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=58.4
Q ss_pred EEEEEeCCCccchh-c-hhhhccccCC-CCCCcEEEEEeecHH---------HHhhcccCCccccCCCChHhHHHHHHHh
Q 048758 39 FLLVLDDLWNENYN-S-WCTLSCPFGA-GASGSKIVVTHRNQD---------VAATMRAVSGKTLKELSDDDCLRVLIQH 106 (777)
Q Consensus 39 ~LlvLDdv~~~~~~-~-~~~~~~~~~~-~~~gs~iiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 106 (777)
-+|||||+..-... + .+.+...+.. ...+.++|+||+... +...+.....+.+++++.++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 38999999653211 1 2233332221 123347899887532 2223333457899999999989988775
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 107 SLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
+-... .... .+..+.+++.++|.|..+..+.
T Consensus 172 ~~~~~-~~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 172 AARRG-LQLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 43211 1122 2566777778899987775554
No 98
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=83.82 E-value=6.3 Score=44.88 Aligned_cols=102 Identities=10% Similarity=0.086 Sum_probs=65.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHH-hhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA-ATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~-~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
.+.-++|||+|..-....++.+...+-......++|+||++.+-. .... --..+.+.+++.++..+.+........ .
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I 196 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-I 196 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-C
Confidence 344588899997765555666666555555577888877776532 2211 124689999999999998877653221 1
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAKTLG 141 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~~~~ 141 (777)
..+ .+....|++.++|-. -||..+-
T Consensus 197 ~id---~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 197 AFE---PQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 111 266778888888754 5555533
No 99
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=83.63 E-value=5.8 Score=41.47 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhC-----CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCC
Q 048758 23 LNSLQVKLKERLS-----GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELS 95 (777)
Q Consensus 23 ~~~~~~~l~~~L~-----~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~ 95 (777)
+++. +.+.+++. +++-++|+|++........+.+...+.....+..+|++|.... +..... --..+++.+++
T Consensus 123 vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~ 201 (351)
T PRK09112 123 VDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLD 201 (351)
T ss_pred HHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCC
Confidence 3443 34555553 3566899999977655555555555544434555555554443 332222 12579999999
Q ss_pred hHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 96 DDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 96 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
.++..+.+...+.. . ... .+.+..+++.++|.|.....+
T Consensus 202 ~~~~~~~L~~~~~~--~-~~~---~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 202 DDELKKALSHLGSS--Q-GSD---GEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred HHHHHHHHHHhhcc--c-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 99999999874321 1 111 245678899999999654433
No 100
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=83.47 E-value=2.5 Score=36.68 Aligned_cols=57 Identities=14% Similarity=0.307 Sum_probs=19.3
Q ss_pred HccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccch-hhhccccCcEEeeC
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLE 399 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~ 399 (777)
|.++..|+.+.+..+ +..++ ..+.++..|+.+.+.+ .+..++. .+..+.+|+.+++.
T Consensus 31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 344444444444432 33322 2233444444444433 2222222 23334444444443
No 101
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.98 E-value=0.93 Score=26.51 Aligned_cols=19 Identities=26% Similarity=0.259 Sum_probs=10.4
Q ss_pred ccCcEEeeCCCcCccccchh
Q 048758 391 YNLHTILLEDCWKLKKLCKD 410 (777)
Q Consensus 391 ~~L~~L~l~~~~~l~~lp~~ 410 (777)
++|++|++++| .+..+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45556666655 55555543
No 102
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.98 E-value=0.93 Score=26.51 Aligned_cols=19 Identities=26% Similarity=0.259 Sum_probs=10.4
Q ss_pred ccCcEEeeCCCcCccccchh
Q 048758 391 YNLHTILLEDCWKLKKLCKD 410 (777)
Q Consensus 391 ~~L~~L~l~~~~~l~~lp~~ 410 (777)
++|++|++++| .+..+|.+
T Consensus 2 ~~L~~L~L~~N-~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNN-QLSSLPPG 20 (26)
T ss_pred CCCCEEECCCC-cCCcCCHH
Confidence 45556666655 55555543
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.19 E-value=0.9 Score=26.65 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=11.5
Q ss_pred CCCccEEEecCCCCCcc
Q 048758 749 LSSLTEMRIYGCTSLVS 765 (777)
Q Consensus 749 l~~L~~L~l~~c~~l~~ 765 (777)
+++|++|++++|+.++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46677777777776653
No 104
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=81.84 E-value=4.6 Score=44.36 Aligned_cols=95 Identities=18% Similarity=0.212 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEE-EeecHHHHhhccc-CCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVV-THRNQDVAATMRA-VSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iii-TTR~~~v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|+++.-....++.+...+....+.+++|+ ||+...+...... -..+++.+++.++..+.+...+.....
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi- 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL- 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 4567899999987655667777766665555666664 5555455443322 246899999999999999887743221
Q ss_pred CCChhHHHHHHHHHHHcCCch
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP 134 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP 134 (777)
... .+....|++.++|.+
T Consensus 206 ~ie---~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 206 KTD---IEALRIIAYKSEGSA 223 (507)
T ss_pred CCC---HHHHHHHHHHcCCCH
Confidence 111 245677888888876
No 105
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.52 E-value=0.1 Score=48.93 Aligned_cols=82 Identities=22% Similarity=0.210 Sum_probs=72.5
Q ss_pred cccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcccccccCCc
Q 048758 363 EIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLL 442 (777)
Q Consensus 363 ~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 442 (777)
+|.....-..||++.+++..+-..++.++.|..||++.+ .+..+|.+++++..+.++++..|. ....|..+++++.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcc
Confidence 466778889999999999999889999999999999988 889999999999999999988877 888999999988888
Q ss_pred ccCc
Q 048758 443 TLGR 446 (777)
Q Consensus 443 ~L~~ 446 (777)
.++.
T Consensus 115 ~~e~ 118 (326)
T KOG0473|consen 115 KNEQ 118 (326)
T ss_pred hhhh
Confidence 7743
No 106
>PRK08727 hypothetical protein; Validated
Probab=81.46 E-value=4.8 Score=39.43 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=55.8
Q ss_pred EEEEEeCCCccch-hchh-hhccccCC-CCCCcEEEEEeecH---------HHHhhcccCCccccCCCChHhHHHHHHHh
Q 048758 39 FLLVLDDLWNENY-NSWC-TLSCPFGA-GASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLRVLIQH 106 (777)
Q Consensus 39 ~LlvLDdv~~~~~-~~~~-~~~~~~~~-~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 106 (777)
-+|||||+..... ..|. .+...+.. ...|..||+||+.. ++..++.....++++++++++-.+++..+
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 4899999953210 1122 22221111 12456799999743 23334444567899999999999999987
Q ss_pred hcCCCCCCCChhHHHHHHHHHHHcCCchhH
Q 048758 107 SLGARYFNIPQSLKEVAEKIAKKCKGLPLA 136 (777)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~i~~~c~glPla 136 (777)
+.... ...+ ++....+++.++|-.-+
T Consensus 175 a~~~~-l~l~---~e~~~~La~~~~rd~r~ 200 (233)
T PRK08727 175 AQRRG-LALD---EAAIDWLLTHGERELAG 200 (233)
T ss_pred HHHcC-CCCC---HHHHHHHHHhCCCCHHH
Confidence 75422 1222 25667777777765433
No 107
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.65 E-value=0.96 Score=26.41 Aligned_cols=19 Identities=42% Similarity=0.627 Sum_probs=13.4
Q ss_pred CCcccEEeeecCCCCCCchh
Q 048758 725 PCRLQFLELRNCEGLTRLPQ 744 (777)
Q Consensus 725 ~~~L~~L~l~~c~~l~~lp~ 744 (777)
|++|++|++++ ++|+++|+
T Consensus 1 P~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 1 PPSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred CcccceeecCC-CccccCcc
Confidence 46777777777 56777775
No 108
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=79.75 E-value=6.1 Score=44.89 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=73.5
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEE--EeecHHHHh-hcc-cCCccccCCCChHhHH
Q 048758 25 SLQVKLKERLSGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVV--THRNQDVAA-TMR-AVSGKTLKELSDDDCL 100 (777)
Q Consensus 25 ~~~~~l~~~L~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iii--TTR~~~v~~-~~~-~~~~~~l~~L~~~ea~ 100 (777)
..+..+.+.++++++.++-|+.|..+...|..+...+....+...|+| ||++..... ... --..+.+.+++.+|.+
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 457788899999999999888877766677777766665555555555 666543211 111 1135678999999999
Q ss_pred HHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhh
Q 048758 101 RVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGL 143 (777)
Q Consensus 101 ~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~ 143 (777)
+++...+-.... ... .+....|.+++..-+-|+..++.+
T Consensus 360 ~Il~~~a~~~~v-~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 360 LIVLNAAEKINV-HLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHcCC-CCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 999987643211 111 245555555555446666666544
No 109
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=78.89 E-value=3.9 Score=35.63 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=48.0
Q ss_pred hhHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhCCCe-EEEEEeCCCcc-chhchhhhccccCCCCCCcEEEEEeec
Q 048758 2 FRISKSILNSVAKDQSNNDDDLNSLQVKLKERLSGKK-FLLVLDDLWNE-NYNSWCTLSCPFGAGASGSKIVVTHRN 76 (777)
Q Consensus 2 ~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~~~~-~LlvLDdv~~~-~~~~~~~~~~~~~~~~~gs~iiiTTR~ 76 (777)
..+.++|+..+..... ...+.++..+.+.+.+.+.+ .+||+||+..- ....++.+..... ..+.+||+..+.
T Consensus 52 ~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 52 RDFAQEILEALGLPLK-SRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHHHT-SSS-STS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHHHHhCcccc-ccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 3567788888887765 34577888899999997655 59999999554 3344444433333 567788887755
No 110
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=78.78 E-value=16 Score=37.77 Aligned_cols=95 Identities=14% Similarity=0.138 Sum_probs=61.7
Q ss_pred eEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHH-Hhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCCC
Q 048758 38 KFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV-AATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFNI 115 (777)
Q Consensus 38 ~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v-~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 115 (777)
+=++|+|+++.......+.+...+-.-..++.+|+||.+.+. ..... --..+.+.+++.+++.+.+........
T Consensus 107 ~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~~---- 182 (328)
T PRK05707 107 RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPESD---- 182 (328)
T ss_pred CeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccCC----
Confidence 334467999776666666666655554456778888877643 32222 224689999999999988876531111
Q ss_pred ChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 116 PQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 116 ~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
.+.+..++..++|.|.....+
T Consensus 183 ----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHH
Confidence 144567788999999644433
No 111
>PRK06620 hypothetical protein; Validated
Probab=77.12 E-value=7.2 Score=37.55 Aligned_cols=90 Identities=9% Similarity=0.101 Sum_probs=52.8
Q ss_pred EEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-------HHhhcccCCccccCCCChHhHHHHHHHhhcCCC
Q 048758 39 FLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-------VAATMRAVSGKTLKELSDDDCLRVLIQHSLGAR 111 (777)
Q Consensus 39 ~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~ 111 (777)
-++++|||..-+...+..+...+. ..|..||+|++... +..++...-+++++++++++-.+++.+.+...
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~- 163 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS- 163 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-
Confidence 478889995322122222222222 24568999987433 33344445579999999999888887776422
Q ss_pred CCCCChhHHHHHHHHHHHcCCch
Q 048758 112 YFNIPQSLKEVAEKIAKKCKGLP 134 (777)
Q Consensus 112 ~~~~~~~~~~~~~~i~~~c~glP 134 (777)
....+ +++..-|++.+.|--
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPREY 183 (214)
T ss_pred CCCCC---HHHHHHHHHHccCCH
Confidence 11122 256666777666554
No 112
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=77.03 E-value=5.3 Score=34.60 Aligned_cols=98 Identities=16% Similarity=0.339 Sum_probs=53.8
Q ss_pred HHccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccchh-ccccC
Q 048758 339 LLNHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKD-MGNLT 415 (777)
Q Consensus 339 ~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~ 415 (777)
.|.++.+|+.+.+.. .+..++ .+|.++.+|+.+.+.++ +..++. .+..+.+|+.+.+.. .+..++.. +..++
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence 367778889888874 455654 44678889999999875 766654 467787899999965 44555543 55688
Q ss_pred cccEEecCCcccccccCcc-cccccCCccc
Q 048758 416 KLRHLKNSNVHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 416 ~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L 444 (777)
+|+.+.+..+ +..++.. +.+. +|+.+
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEE
Confidence 9998888653 3344332 4444 55444
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=77.00 E-value=12 Score=39.78 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=59.5
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
++-++|+|++........+.+...+.....+..+|++|.+.. +..... --..+.+.+++.++..+.+.....
T Consensus 117 ~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------ 190 (394)
T PRK07940 117 RWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------ 190 (394)
T ss_pred CcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------
Confidence 445788899977655555555555544445666777666643 332222 235789999999999988874421
Q ss_pred CChhHHHHHHHHHHHcCCchhHH
Q 048758 115 IPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glPlal 137 (777)
.+ .+.+..++..++|-|..-
T Consensus 191 ~~---~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 191 VD---PETARRAARASQGHIGRA 210 (394)
T ss_pred CC---HHHHHHHHHHcCCCHHHH
Confidence 11 255778899999998543
No 114
>PRK13342 recombination factor protein RarA; Reviewed
Probab=76.92 E-value=9.4 Score=41.17 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=59.9
Q ss_pred CCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEE--EeecHHHH--hhc-ccCCccccCCCChHhHHHHHHHhhcC
Q 048758 35 SGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVV--THRNQDVA--ATM-RAVSGKTLKELSDDDCLRVLIQHSLG 109 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iii--TTR~~~v~--~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 109 (777)
.+++.+|++|+++.-.....+.+...+. .|..++| ||.+.... ... .--..+.+.+++.++..+++...+..
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 3477899999998754445555544333 2444444 34443211 111 11257899999999999999886532
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 110 ARYFNIPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
..... ..--.+....+++.|+|.+..+..+
T Consensus 167 ~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 167 KERGL-VELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hhcCC-CCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 11000 0111356778889999998655333
No 115
>PLN03025 replication factor C subunit; Provisional
Probab=76.55 E-value=15 Score=37.96 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=58.0
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecH-HHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
+.-++|||+++.-.....+.+...+......+++|+++... .+..... --..+++.++++++..+.+...+-...- .
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi-~ 177 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV-P 177 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC-C
Confidence 45699999997654444444444443444567787777443 2211111 1246899999999998888877633211 1
Q ss_pred CChhHHHHHHHHHHHcCCch
Q 048758 115 IPQSLKEVAEKIAKKCKGLP 134 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glP 134 (777)
.+ .+....+++.++|-.
T Consensus 178 i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 178 YV---PEGLEAIIFTADGDM 194 (319)
T ss_pred CC---HHHHHHHHHHcCCCH
Confidence 22 256788888888876
No 116
>PRK08084 DNA replication initiation factor; Provisional
Probab=75.92 E-value=8.5 Score=37.73 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=56.3
Q ss_pred EEEEEeCCCccc-hhchh----hhccccCCCCCCcEEEEEeecH---------HHHhhcccCCccccCCCChHhHHHHHH
Q 048758 39 FLLVLDDLWNEN-YNSWC----TLSCPFGAGASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLRVLI 104 (777)
Q Consensus 39 ~LlvLDdv~~~~-~~~~~----~~~~~~~~~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 104 (777)
-++++||+.... ..+|+ .+.......+ +.++|+||+.. ++..++....+++++++++++-.+++.
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g-~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESG-RTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcC-CCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 378999994421 11222 2222222221 23799999754 344555566789999999999999988
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 048758 105 QHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal 137 (777)
+++.... ...+ +++..-+++.+.|-.-++
T Consensus 178 ~~a~~~~-~~l~---~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 178 LRARLRG-FELP---EDVGRFLLKRLDREMRTL 206 (235)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhhcCCHHHH
Confidence 7664321 1222 266777777777665444
No 117
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.70 E-value=9.9 Score=41.95 Aligned_cols=98 Identities=11% Similarity=0.134 Sum_probs=64.1
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecH-HHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|+++......++.+...+........+|++|... .+..... ....+++.+++.++..+.+...+-...-
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi- 193 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR- 193 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 455689999997665556677776666555556666666443 3322222 2347899999999999999887633221
Q ss_pred CCChhHHHHHHHHHHHcCCchhHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal 137 (777)
... .+.+..|++.++|.+--+
T Consensus 194 ~i~---~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 194 EAE---PEALQLVARLADGAMRDA 214 (504)
T ss_pred CCC---HHHHHHHHHHcCCCHHHH
Confidence 111 256788999999988433
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=73.57 E-value=9 Score=37.33 Aligned_cols=102 Identities=20% Similarity=0.114 Sum_probs=57.2
Q ss_pred EEEEEeCCCccchhchhhhccccCCC-CCCc-EEEEEeecHHHHh--------hcccCCccccCCCChHhHHHHHHHhhc
Q 048758 39 FLLVLDDLWNENYNSWCTLSCPFGAG-ASGS-KIVVTHRNQDVAA--------TMRAVSGKTLKELSDDDCLRVLIQHSL 108 (777)
Q Consensus 39 ~LlvLDdv~~~~~~~~~~~~~~~~~~-~~gs-~iiiTTR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~~~~ 108 (777)
-+||+||+..-....-..+...+... ..|. .||+|++...... .+.....++++++++++-.+++...+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 47889999543222222333333221 1333 4666666433221 222235789999999876666665432
Q ss_pred CCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhc
Q 048758 109 GARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLL 144 (777)
Q Consensus 109 ~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 144 (777)
.. ....+ ++....+++.+.|.+..+..+-..+
T Consensus 172 ~~-~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ER-GLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred Hc-CCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 21 11222 2677778888999998877666554
No 119
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.99 E-value=32 Score=38.84 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhccc-CCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMRA-VSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
++.-++|+|+|........+.+...+-....+.++|++|.+ ..+...... -..+.+..++.++..+.+...+.... .
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i 201 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-I 201 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-C
Confidence 45568999999776656667766666554455666655544 444433221 25789999999999888876653211 1
Q ss_pred CCChhHHHHHHHHHHHcCCchhH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLA 136 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPla 136 (777)
... .+....|++.++|.|..
T Consensus 202 ~~d---~eAL~~IA~~A~Gs~Rd 221 (700)
T PRK12323 202 AHE---VNALRLLAQAAQGSMRD 221 (700)
T ss_pred CCC---HHHHHHHHHHcCCCHHH
Confidence 111 24567889999998853
No 120
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=72.43 E-value=22 Score=36.60 Aligned_cols=96 Identities=16% Similarity=0.179 Sum_probs=61.8
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhccc-CCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMRA-VSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++=++|+|+++......-+++...+-.-..++.+|++|.+.+ +...... -..+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 3456899999977655555555555544445677777776544 3333222 2468899999999988886541
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
.+ ...+..++..++|.|+....+.
T Consensus 186 -~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 -VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1336678899999997554433
No 121
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=70.05 E-value=16 Score=38.17 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=57.6
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
.+-+||+||+..-.......+...+......+++|+||.... +..... ....+.+.+++.++..+.+...+..... .
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~ 203 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-D 203 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-C
Confidence 345899999954332233344444433444577888875432 222222 1246788999999988888876532221 1
Q ss_pred CChhHHHHHHHHHHHcCCchhHH
Q 048758 115 IPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glPlal 137 (777)
.+ .+.+..+++.++|.+-.+
T Consensus 204 ~~---~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 204 YD---DDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CC---HHHHHHHHHHcCCCHHHH
Confidence 22 267778888888876444
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=69.94 E-value=31 Score=37.63 Aligned_cols=108 Identities=8% Similarity=0.069 Sum_probs=62.1
Q ss_pred HHHHhCCCeEEEEEeCCCccc--hhchhhhccccCC-CCCCcEEEEEeecH---------HHHhhcccCCccccCCCChH
Q 048758 30 LKERLSGKKFLLVLDDLWNEN--YNSWCTLSCPFGA-GASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDD 97 (777)
Q Consensus 30 l~~~L~~~~~LlvLDdv~~~~--~~~~~~~~~~~~~-~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ 97 (777)
+++.+++ .-+|||||+..-. ....+.+...+.. ...|..||+|+... .+..++...-+..+++++.+
T Consensus 200 ~~~~~~~-~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e 278 (450)
T PRK14087 200 FKNEICQ-NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNK 278 (450)
T ss_pred HHHHhcc-CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHH
Confidence 3444443 3478899994321 1111222222221 12344688886533 23334444566789999999
Q ss_pred hHHHHHHHhhcCCCC-CCCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 98 DCLRVLIQHSLGARY-FNIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 98 ea~~Lf~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
+-.+++..++-.... ...+ ++...-|++.++|.|-.+.-+.
T Consensus 279 ~r~~iL~~~~~~~gl~~~l~---~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 279 TATAIIKKEIKNQNIKQEVT---EEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHHHHhcCCCCCCC---HHHHHHHHHccCCCHHHHHHHH
Confidence 999999988743211 0111 3678888889999986654433
No 123
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.93 E-value=20 Score=37.92 Aligned_cols=96 Identities=13% Similarity=0.125 Sum_probs=61.5
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-....++.+...+.......++|++|.+.+ +..... --..+++.+++.++..+.+...+.....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~- 196 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI- 196 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 3456999999966544455566655555555667777775543 332222 1257899999999998888776532211
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
..+ ++.+..|++.++|.|-
T Consensus 197 ~i~---~~al~~ia~~s~G~~R 215 (363)
T PRK14961 197 DTD---EYALKLIAYHAHGSMR 215 (363)
T ss_pred CCC---HHHHHHHHHHcCCCHH
Confidence 111 2567778889999774
No 124
>PRK05642 DNA replication initiation factor; Validated
Probab=69.60 E-value=11 Score=36.88 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=59.7
Q ss_pred HHHHhCCCeEEEEEeCCCccc-hhchh-hhccccCC-CCCCcEEEEEeecHH---------HHhhcccCCccccCCCChH
Q 048758 30 LKERLSGKKFLLVLDDLWNEN-YNSWC-TLSCPFGA-GASGSKIVVTHRNQD---------VAATMRAVSGKTLKELSDD 97 (777)
Q Consensus 30 l~~~L~~~~~LlvLDdv~~~~-~~~~~-~~~~~~~~-~~~gs~iiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ 97 (777)
+.+.+.+-. ++|+||+.... ...|. .+...+.. ...|.+||+||+... +..++....++++++++++
T Consensus 91 ~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e 169 (234)
T PRK05642 91 LLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDE 169 (234)
T ss_pred HHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHH
Confidence 344444333 57889994321 12222 23322321 124667888887533 1223333467889999999
Q ss_pred hHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 048758 98 DCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKT 139 (777)
Q Consensus 98 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 139 (777)
+-.+.+..++.... ...+ +++..-+++.+.|-.-++..
T Consensus 170 ~~~~il~~ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 170 DKLRALQLRASRRG-LHLT---DEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHHHHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 99999987764432 1222 36777788877777544433
No 125
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=69.43 E-value=20 Score=37.74 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=62.3
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+......+.+|++|.+.+ +..... ....+++.+++.++..+.+...+-....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~- 194 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI- 194 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 3455889999855433445555555544445667777775554 222221 2246788899999988888876632211
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
..+ .+.+..+++.++|.|-.+...
T Consensus 195 ~i~---~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 195 KIE---DEALELIARAADGSLRDALSL 218 (355)
T ss_pred CCC---HHHHHHHHHHcCCChHHHHHH
Confidence 122 267788888999988655433
No 126
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=67.84 E-value=2.1 Score=24.42 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=5.5
Q ss_pred CccCeeeccCCccc
Q 048758 368 KHLRCLNLSRTRIQ 381 (777)
Q Consensus 368 ~~L~~L~L~~~~i~ 381 (777)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444555544443
No 127
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.60 E-value=20 Score=40.41 Aligned_cols=105 Identities=14% Similarity=0.153 Sum_probs=66.2
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+........+|++|.+ ..+..... --..+++.+++.++..+.+...+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi- 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV- 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-
Confidence 45668999999665545556666555443345566665655 44443322 1247899999999998888776533211
Q ss_pred CCChhHHHHHHHHHHHcCCc-hhHHHHHHhhc
Q 048758 114 NIPQSLKEVAEKIAKKCKGL-PLAAKTLGGLL 144 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~gl-Plal~~~~~~l 144 (777)
... .+.+..|++.++|- -.|+..+...+
T Consensus 197 ~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 DYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 122 25677888888885 47777776544
No 128
>PF14516 AAA_35: AAA-like domain
Probab=66.37 E-value=29 Score=36.08 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=42.9
Q ss_pred CCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCC
Q 048758 86 VSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGK 147 (777)
Q Consensus 86 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~ 147 (777)
...+.+++++.+|...|...+..... . ...+++.+.+||+|--+..++..+...
T Consensus 193 g~~i~L~~Ft~~ev~~L~~~~~~~~~-----~---~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 193 GQPIELPDFTPEEVQELAQRYGLEFS-----Q---EQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred ccceeCCCCCHHHHHHHHHhhhccCC-----H---HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 35689999999999999988753211 1 338899999999999999999888664
No 129
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.83 E-value=4.8 Score=23.64 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=7.5
Q ss_pred CccCeeeccCCccc
Q 048758 368 KHLRCLNLSRTRIQ 381 (777)
Q Consensus 368 ~~L~~L~L~~~~i~ 381 (777)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555555555554
No 130
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=64.26 E-value=9 Score=37.07 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=53.8
Q ss_pred HHHHhCCCeEEEEEeCCCccch-----hchhhhccccCCCCCCcEEEEEeecHH---------HHhhcccCCccccCCCC
Q 048758 30 LKERLSGKKFLLVLDDLWNENY-----NSWCTLSCPFGAGASGSKIVVTHRNQD---------VAATMRAVSGKTLKELS 95 (777)
Q Consensus 30 l~~~L~~~~~LlvLDdv~~~~~-----~~~~~~~~~~~~~~~gs~iiiTTR~~~---------v~~~~~~~~~~~l~~L~ 95 (777)
+++.+.+- =+|++|||..-.. +.+..+...+. ..|.+||+|++... +..++...-++++++++
T Consensus 91 ~~~~~~~~-DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd 167 (219)
T PF00308_consen 91 FKDRLRSA-DLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPD 167 (219)
T ss_dssp HHHHHCTS-SEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----
T ss_pred hhhhhhcC-CEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCC
Confidence 34444433 3778999954221 12222222222 24668999995442 33344455679999999
Q ss_pred hHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 048758 96 DDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 96 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal 137 (777)
+++-.+++..+|....- ..+ ++++.-+++.+.+..-.|
T Consensus 168 ~~~r~~il~~~a~~~~~-~l~---~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 168 DEDRRRILQKKAKERGI-ELP---EEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHHHHHHHTT---S----HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCc---HHHHHHHHHhhcCCHHHH
Confidence 99999999998854322 122 256666666666544333
No 131
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=64.25 E-value=47 Score=37.94 Aligned_cols=96 Identities=9% Similarity=0.129 Sum_probs=58.2
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|+|..-.....+.+...+......+++|++|.+.. +..... --..+.+.+++.++..+.+...+-... .
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-I 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-C
Confidence 4566899999966443344445545544334567777775543 222211 114578889999998888876653221 1
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
... ...+..|++.++|.+-
T Consensus 197 ~id---~eAL~~Ia~~A~GslR 215 (709)
T PRK08691 197 AYE---PPALQLLGRAAAGSMR 215 (709)
T ss_pred CcC---HHHHHHHHHHhCCCHH
Confidence 111 2567888888888873
No 132
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=64.23 E-value=19 Score=38.10 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=57.9
Q ss_pred EEEEEeCCCccc-----hhchhhhccccCCCCCCcEEEEEeecH---------HHHhhcccCCccccCCCChHhHHHHHH
Q 048758 39 FLLVLDDLWNEN-----YNSWCTLSCPFGAGASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLRVLI 104 (777)
Q Consensus 39 ~LlvLDdv~~~~-----~~~~~~~~~~~~~~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 104 (777)
=++++||++--. +++...+...+... |-.||+|++.. ++..+++..-++++++++++....++.
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 388999994411 22333333333333 33799998443 344556666789999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHH
Q 048758 105 QHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAK 138 (777)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~ 138 (777)
.++....-.-++....-++.++.+-..-+.-|+.
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 8764433322333344455555444444444553
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.02 E-value=43 Score=35.85 Aligned_cols=96 Identities=9% Similarity=0.154 Sum_probs=60.3
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEe-ecHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+.+-++|+|++..-....++.+...+.+..+.+.+|++| +-..+..... ....+++.+++.++..+.+...+-... .
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-I 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-C
Confidence 445688999996654445666666665555566766655 4344433322 124688999999988877776552211 1
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
... .+.+..+++.++|.+-
T Consensus 205 ~i~---~~al~~l~~~s~g~lr 223 (397)
T PRK14955 205 SVD---ADALQLIGRKAQGSMR 223 (397)
T ss_pred CCC---HHHHHHHHHHcCCCHH
Confidence 122 2678889999999774
No 134
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=62.39 E-value=41 Score=34.57 Aligned_cols=104 Identities=17% Similarity=0.131 Sum_probs=63.3
Q ss_pred HHHHHHhC-----CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecH-HHHhhcc-cCCccccCCCChHhHH
Q 048758 28 VKLKERLS-----GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMR-AVSGKTLKELSDDDCL 100 (777)
Q Consensus 28 ~~l~~~L~-----~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~ 100 (777)
+.+.+.+. +++-++|+|++........+++...+-.-. .+.+|++|.+. .+..... --..+.+.++++++..
T Consensus 110 r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~ 188 (314)
T PRK07399 110 REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLE 188 (314)
T ss_pred HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHH
Confidence 44555553 456689999996655555555554444333 34555555444 3433332 2357899999999999
Q ss_pred HHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 048758 101 RVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKT 139 (777)
Q Consensus 101 ~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 139 (777)
+.+....... ........++..++|-|.....
T Consensus 189 ~~L~~~~~~~-------~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 189 QVLKRLGDEE-------ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred HHHHHhhccc-------cchhHHHHHHHHcCCCHHHHHH
Confidence 9998764211 1011235788899999955433
No 135
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=61.97 E-value=54 Score=33.84 Aligned_cols=91 Identities=10% Similarity=0.024 Sum_probs=61.2
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhccc-CCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMRA-VSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++=.+|+|+++.......+++...+-+-.++..+|++|.+.+ +...... -..+.+.+++.+++.+.+.....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~----- 180 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS----- 180 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-----
Confidence 4455788999977666666666665555556677777777654 3333222 35789999999999988877641
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
... ..+...+..++|.|.
T Consensus 181 -~~~---~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 181 -AEI---SEILTALRINYGRPL 198 (325)
T ss_pred -cCh---HHHHHHHHHcCCCHH
Confidence 111 235667788999995
No 136
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=61.00 E-value=36 Score=38.23 Aligned_cols=88 Identities=15% Similarity=0.163 Sum_probs=51.7
Q ss_pred EEEEeCCCccch-----hchhhhccccCCCCCCcEEEEEeecH---------HHHhhcccCCccccCCCChHhHHHHHHH
Q 048758 40 LLVLDDLWNENY-----NSWCTLSCPFGAGASGSKIVVTHRNQ---------DVAATMRAVSGKTLKELSDDDCLRVLIQ 105 (777)
Q Consensus 40 LlvLDdv~~~~~-----~~~~~~~~~~~~~~~gs~iiiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 105 (777)
+|||||+..... .++..+...+. ..|..|||||+.. .+..++...-++.+++.+++.-.+++..
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 788999944211 12222222222 2355688888752 2344555667789999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHcCCc
Q 048758 106 HSLGARYFNIPQSLKEVAEKIAKKCKGL 133 (777)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~c~gl 133 (777)
++....- ..+ ++++.-|++.+.+.
T Consensus 458 ka~~r~l-~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 458 KAVQEQL-NAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHhcCC-CCC---HHHHHHHHHhccCC
Confidence 8744322 222 24455555554433
No 137
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=60.56 E-value=16 Score=36.50 Aligned_cols=98 Identities=16% Similarity=0.159 Sum_probs=65.3
Q ss_pred EEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHH-Hhhccc-CCccccCCCChHhHHHHHHHhhcCCCCCCCC
Q 048758 39 FLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV-AATMRA-VSGKTLKELSDDDCLRVLIQHSLGARYFNIP 116 (777)
Q Consensus 39 ~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v-~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~ 116 (777)
-.+|||+++......|.++..-.......+|.|+.+-.... ...... -..+..++|.+++..+-+...+-...- ..+
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v-~~d 209 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGV-DID 209 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCC-CCC
Confidence 47899999888888999998888877677777665544432 222111 235889999999998888887743222 112
Q ss_pred hhHHHHHHHHHHHcCCc-hhHHHHH
Q 048758 117 QSLKEVAEKIAKKCKGL-PLAAKTL 140 (777)
Q Consensus 117 ~~~~~~~~~i~~~c~gl-Plal~~~ 140 (777)
.+..+.|++.++|- --|+.++
T Consensus 210 ---~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 210 ---DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred ---HHHHHHHHHHcCCcHHHHHHHH
Confidence 25677788888875 3444333
No 138
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.97 E-value=44 Score=37.87 Aligned_cols=96 Identities=13% Similarity=0.139 Sum_probs=61.0
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
+.-++|||+|..-....++.+...+.......++|++|.+ ..+..... --..+++++++.++..+.+...+.... ..
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i~ 202 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-VP 202 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-CC
Confidence 3458899999776666666666655554455666655544 34433322 235789999999998888877653221 11
Q ss_pred CChhHHHHHHHHHHHcCCchhH
Q 048758 115 IPQSLKEVAEKIAKKCKGLPLA 136 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glPla 136 (777)
.+ .+.+..|++.++|-+-.
T Consensus 203 ie---~~AL~~La~~s~GslR~ 221 (618)
T PRK14951 203 AE---PQALRLLARAARGSMRD 221 (618)
T ss_pred CC---HHHHHHHHHHcCCCHHH
Confidence 11 25677888888887633
No 139
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.22 E-value=70 Score=36.35 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=60.8
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhc-ccCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATM-RAVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|+|..-.....+.+...+.....+.++|++|.+.. +.... ..-..+++.+++.++..+.+...+....-
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI- 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI- 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-
Confidence 4556899999976544555566655555445667887776643 22111 22357899999999988888776532211
Q ss_pred CCChhHHHHHHHHHHHcCCch
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP 134 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP 134 (777)
... .+....|++.++|-+
T Consensus 196 ~id---~eAL~~IA~~S~GdL 213 (702)
T PRK14960 196 AAD---QDAIWQIAESAQGSL 213 (702)
T ss_pred CCC---HHHHHHHHHHcCCCH
Confidence 111 256777888888876
No 140
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.98 E-value=67 Score=34.40 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCC--eEEEEEeCCCccchhchhhhccccCCC-CCCcEEEEEeecH--HH----Hhhc----c-cCCcc
Q 048758 24 NSLQVKLKERLSGK--KFLLVLDDLWNENYNSWCTLSCPFGAG-ASGSKIVVTHRNQ--DV----AATM----R-AVSGK 89 (777)
Q Consensus 24 ~~~~~~l~~~L~~~--~~LlvLDdv~~~~~~~~~~~~~~~~~~-~~gs~iiiTTR~~--~v----~~~~----~-~~~~~ 89 (777)
....+.+.++.+.. -+++|||..+.-.-..-..+...|-|. -+++|+|+.---. +. +... + ....+
T Consensus 241 ~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l 320 (529)
T KOG2227|consen 241 MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLL 320 (529)
T ss_pred HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCcee
Confidence 45566666666544 589999998542111112222222222 2667777643111 11 1111 1 34678
Q ss_pred ccCCCChHhHHHHHHHhhcCCCCC-CCChhHHHHHHHHHHHcCCchhHHHHHHhhc
Q 048758 90 TLKELSDDDCLRVLIQHSLGARYF-NIPQSLKEVAEKIAKKCKGLPLAAKTLGGLL 144 (777)
Q Consensus 90 ~l~~L~~~ea~~Lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 144 (777)
..+|-+.++-.++|.++.-..... ..+...+-.|++++...|.+-.|+.+.-+++
T Consensus 321 ~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 321 VFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred eecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 889999999999999997443332 2234566677777777777888877766555
No 141
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.51 E-value=28 Score=37.85 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=60.3
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhccc-CCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMRA-VSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~~-~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
++.-++|+|+|..-....++++...+-.......+|++|.+ ..+...... -..|.+.+++.++..+.+...+-... .
T Consensus 120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i 198 (484)
T PRK14956 120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-V 198 (484)
T ss_pred CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-C
Confidence 45569999999776656677776555443345555544444 444333222 24689999999988888877653221 1
Q ss_pred CCChhHHHHHHHHHHHcCCch
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP 134 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP 134 (777)
... .+....|++.++|.+
T Consensus 199 ~~e---~eAL~~Ia~~S~Gd~ 216 (484)
T PRK14956 199 QYD---QEGLFWIAKKGDGSV 216 (484)
T ss_pred CCC---HHHHHHHHHHcCChH
Confidence 112 256788999999987
No 142
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=57.29 E-value=14 Score=33.44 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCeE-EEEEeCCCcc---chhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 27 QVKLKERLSGKKF-LLVLDDLWNE---NYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 27 ~~~l~~~L~~~~~-LlvLDdv~~~---~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
-+..++.+....| |+|||++-.. ...+.+.+...+.....+.-||+|.|+..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3344556666666 9999998221 12333444444545556678999999965
No 143
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=56.88 E-value=65 Score=33.48 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=61.5
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++=.+|+|+++......-+.+...+-+-..++-+|++|.+.+ +..... --..+.+.+++.+++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C----
Confidence 4556899999977665566666655555556677777776654 443322 23468999999999988876542 1
Q ss_pred CCChhHHHHHHHHHHHcCCchhH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLA 136 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPla 136 (777)
.++ +.+..++..++|.|..
T Consensus 182 -~~~---~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 182 -MSQ---DALLAALRLSAGAPGA 200 (334)
T ss_pred -CCH---HHHHHHHHHcCCCHHH
Confidence 111 3467888999999953
No 144
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=56.83 E-value=41 Score=34.64 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=57.3
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhc-ccCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATM-RAVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
.+-++|+|++..-.......+...+......+++|+++.... +.... .....+++.+++.++..+.+...+..... .
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~ 180 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-E 180 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-C
Confidence 356899999854333333444444444445577887774322 11111 11235889999999988888877643221 1
Q ss_pred CChhHHHHHHHHHHHcCCchhH
Q 048758 115 IPQSLKEVAEKIAKKCKGLPLA 136 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glPla 136 (777)
.. .+.+..+++.++|.+-.
T Consensus 181 i~---~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 181 IT---DDALEAIYYVSEGDMRK 199 (319)
T ss_pred CC---HHHHHHHHHHcCCCHHH
Confidence 22 25677888889988744
No 145
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=56.66 E-value=36 Score=35.54 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=81.2
Q ss_pred CCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEE--EeecHHHHh---hcccCCccccCCCChHhHHHHHHHhhcC
Q 048758 35 SGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVV--THRNQDVAA---TMRAVSGKTLKELSDDDCLRVLIQHSLG 109 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iii--TTR~~~v~~---~~~~~~~~~l~~L~~~ea~~Lf~~~~~~ 109 (777)
.++|.+|++|.|..-.-.+-+.+ +|--..|.-|+| ||-++.-.. -..-..++.+++|+.+|-.+++.+.+-.
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhh
Confidence 47899999999965332332333 333345666665 666654211 1123468999999999999999883311
Q ss_pred -CCCCC-CCh-hHHHHHHHHHHHcCCchh----HHHHHHhhcCCCC--ChhHHHHHHhccccccccC---ccCchhhHhh
Q 048758 110 -ARYFN-IPQ-SLKEVAEKIAKKCKGLPL----AAKTLGGLLSGKD--DLNDWEFVLNTNIWDLRED---KCDILPTLRV 177 (777)
Q Consensus 110 -~~~~~-~~~-~~~~~~~~i~~~c~glPl----al~~~~~~l~~~~--~~~~w~~~~~~~~~~~~~~---~~~~~~~l~~ 177 (777)
.+... ... --++....++..++|--- ++.+++.+-+... ..+.-++.+.+.......+ .-++...+..
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hK 258 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHK 258 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHH
Confidence 11100 000 112466677788888742 2233333333321 2344444544332222222 1245555555
Q ss_pred cccCCChhhHHHHhHhcCCCCC
Q 048758 178 SYHFLPPQLKRCFAYCSLFPKD 199 (777)
Q Consensus 178 sy~~L~~~~k~~fl~~~~f~~~ 199 (777)
|-..=+.+ ...+++.-++-.|
T Consensus 259 SvRGSD~d-AALyylARmi~~G 279 (436)
T COG2256 259 SVRGSDPD-AALYYLARMIEAG 279 (436)
T ss_pred hhccCCcC-HHHHHHHHHHhcC
Confidence 55543332 2333444444433
No 146
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=56.47 E-value=62 Score=33.68 Aligned_cols=90 Identities=16% Similarity=0.135 Sum_probs=60.0
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
++=++|+|+++.......+.+...+-+-.+++.+|++|.+.+ +..... --..+.+.+++.++..+.+.....
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~------ 205 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV------ 205 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC------
Confidence 345888999988776777777766666666777776666644 433322 225789999999999988876521
Q ss_pred CChhHHHHHHHHHHHcCCchhHHH
Q 048758 115 IPQSLKEVAEKIAKKCKGLPLAAK 138 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glPlal~ 138 (777)
.+ ...++..++|.|....
T Consensus 206 -~~-----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 206 -AD-----ADALLAEAGGAPLAAL 223 (342)
T ss_pred -Ch-----HHHHHHHcCCCHHHHH
Confidence 11 1235677899996443
No 147
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=56.42 E-value=50 Score=38.87 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=64.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|||++........+.+...+-......++|++|.+.. +..... --..|++.+++.++..+.+...+-... .
T Consensus 118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg-I 196 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ-L 196 (944)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 5667999999977665566666555554445566666555543 432221 125799999999999988877553211 1
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAKTL 140 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~~~ 140 (777)
.. -.+.+..|++.++|.| .|+..+
T Consensus 197 ~~---edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 197 PF---EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 1256788999999987 444443
No 148
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=55.87 E-value=66 Score=35.09 Aligned_cols=101 Identities=12% Similarity=0.162 Sum_probs=60.3
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+.....+..+|++|.+ ..+..... ....+++.++++++..+.+...+-... .
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-I 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 55668899999554433445555555554446667766643 33322222 224689999999998887776653211 1
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAKTL 140 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~~~ 140 (777)
..+ .+.+..+++.++|.+ .|+..+
T Consensus 199 ~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 199 ETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 111 256788889999865 444443
No 149
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=55.83 E-value=41 Score=35.96 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCC---CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHHhhc-----c-cCCccccCCC
Q 048758 24 NSLQVKLKERLSG---KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATM-----R-AVSGKTLKEL 94 (777)
Q Consensus 24 ~~~~~~l~~~L~~---~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~-----~-~~~~~~l~~L 94 (777)
.+..+.++...+. ++..|+||.| ....+|......+.+.++. +|+||+-+..+...- . -...+.+-||
T Consensus 78 ~~l~d~~~~~~~~~~~~~~yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~Pl 154 (398)
T COG1373 78 IELLDLLRAYIELKEREKSYIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPL 154 (398)
T ss_pred hhHHHHHHHHHHhhccCCceEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCC
Confidence 3334444444332 5679999999 4457899888888888777 899999887764332 1 2346899999
Q ss_pred ChHhHHHHH
Q 048758 95 SDDDCLRVL 103 (777)
Q Consensus 95 ~~~ea~~Lf 103 (777)
+..|-..+-
T Consensus 155 SF~Efl~~~ 163 (398)
T COG1373 155 SFREFLKLK 163 (398)
T ss_pred CHHHHHhhc
Confidence 988877654
No 150
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=55.62 E-value=2.7e+02 Score=29.34 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=77.2
Q ss_pred hHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCccchhchhhhccccCCCCC-CcEEE--EEeecH
Q 048758 3 RISKSILNSVAKDQSNNDDDLNSLQVKLKERLS--GKKFLLVLDDLWNENYNSWCTLSCPFGAGAS-GSKIV--VTHRNQ 77 (777)
Q Consensus 3 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~--~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~-gs~ii--iTTR~~ 77 (777)
.+..+|++++..... -.....+.-+.+.+.+. ++.+++|||+++.-....-+.+-..+..... +++|+ .++-+.
T Consensus 88 ~i~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 88 QVLSKILNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccH
Confidence 466777777763332 33455777888888885 5789999999954221110111111222111 34444 445444
Q ss_pred HHHhhcc-------cCCccccCCCChHhHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHHcC-CchhHHHHHHh
Q 048758 78 DVAATMR-------AVSGKTLKELSDDDCLRVLIQHSLG-ARYFNIPQSLKEVAEKIAKKCK-GLPLAAKTLGG 142 (777)
Q Consensus 78 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~-glPlal~~~~~ 142 (777)
+....+. ....+..+|-+.+|-.+.+..++-. ..+....+..-+++..++..-+ -.-.||..+-+
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 4333322 1234788889999999999888732 2222344455555555555555 44556554433
No 151
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=55.44 E-value=25 Score=37.17 Aligned_cols=94 Identities=14% Similarity=0.108 Sum_probs=53.7
Q ss_pred CCeEEEEEeCCCccc-----------h---hchhhhccccCC--CCCCcEEEEEeecHHHHhh-----cccCCccccCCC
Q 048758 36 GKKFLLVLDDLWNEN-----------Y---NSWCTLSCPFGA--GASGSKIVVTHRNQDVAAT-----MRAVSGKTLKEL 94 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~-----------~---~~~~~~~~~~~~--~~~gs~iiiTTR~~~v~~~-----~~~~~~~~l~~L 94 (777)
....+|++||++.-. . ..+..+...+.. ...+.+||.||...+.... ...+..+.++.+
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 356899999995421 0 012222222221 1246788888876543221 122457899999
Q ss_pred ChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCch
Q 048758 95 SDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLP 134 (777)
Q Consensus 95 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 134 (777)
+.++..++|..++.+... ...-. ...+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 999999999988754332 11112 345666666653
No 152
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=54.80 E-value=1e+02 Score=31.69 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHhC-----CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhccc-CCccccCCC
Q 048758 22 DLNSLQVKLKERLS-----GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMRA-VSGKTLKEL 94 (777)
Q Consensus 22 ~~~~~~~~l~~~L~-----~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~~-~~~~~l~~L 94 (777)
.+++.+ .+.+.+. +++=.+|+|++........+++...+-+-.+++.+|++|.+.+ +...... -..+.+.++
T Consensus 89 ~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~ 167 (319)
T PRK06090 89 TVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP 167 (319)
T ss_pred CHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCC
Confidence 445543 3444442 3345888999977665666666665555556677777766654 4444332 357899999
Q ss_pred ChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 95 SDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 95 ~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
+.+++.+.+.... .. .+..++..++|.|+....+
T Consensus 168 ~~~~~~~~L~~~~-------~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 168 STAQAMQWLKGQG-------IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CHHHHHHHHHHcC-------Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 9999999886542 11 1346788999999865444
No 153
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=54.22 E-value=51 Score=38.25 Aligned_cols=93 Identities=20% Similarity=0.233 Sum_probs=53.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEE--eecHH--HHhhc-ccCCccccCCCChHhHHHHHHHhhcC-
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVT--HRNQD--VAATM-RAVSGKTLKELSDDDCLRVLIQHSLG- 109 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiT--TR~~~--v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~- 109 (777)
+++.++|||||+.-.....+.+...+ ..|+.++|+ |.+.. +.... .-...+.+++++.++..+++...+-.
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 45679999999664434444444322 235555553 44432 21111 12357899999999999998876531
Q ss_pred -----CCCCCCChhHHHHHHHHHHHcCCch
Q 048758 110 -----ARYFNIPQSLKEVAEKIAKKCKGLP 134 (777)
Q Consensus 110 -----~~~~~~~~~~~~~~~~i~~~c~glP 134 (777)
......+ ++....|++.+.|.-
T Consensus 185 ~~~~g~~~v~I~---deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKVDLE---PEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCcccCCC---HHHHHHHHHhCCCCH
Confidence 1111122 255677777887753
No 154
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=54.16 E-value=55 Score=36.49 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+-.....+++|++|.+ ..+..... --..+++.+++.++..+.+...+-... .
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i 196 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-I 196 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-C
Confidence 45669999999765555566666555554455666654444 33443322 235789999999998877776542211 1
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAKTLG 141 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~~~~ 141 (777)
.. -......|++.++|-+ -|+..+-
T Consensus 197 ~~---e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 197 NS---DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 1255677888889865 4555444
No 155
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=53.61 E-value=1.1e+02 Score=34.18 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=62.0
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+++...+-.....+++|++|.+.. +..... -...+++.+++.++..+.+...+-... .
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-V 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-C
Confidence 4456889999976655555566555555455677777776642 222111 224789999999998888766553221 1
Q ss_pred CCChhHHHHHHHHHHHcCCchhHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal 137 (777)
... .+.+..|++.++|.+--+
T Consensus 195 ~i~---~~Al~~Ia~~s~GdlR~a 215 (535)
T PRK08451 195 SYE---PEALEILARSGNGSLRDT 215 (535)
T ss_pred CCC---HHHHHHHHHHcCCcHHHH
Confidence 111 267788999999988433
No 156
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=52.61 E-value=51 Score=38.91 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=61.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecH-HHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|||++........+.+...+-+....+.+|++|.+. .+..... --..|++..++.++..+.+....-.. ..
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E-Gv 197 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE-GV 197 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc-CC
Confidence 445578899997766666677776666655666777666444 3443332 23578999999998887776654211 11
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
... ......|++.++|-+-
T Consensus 198 ~id---~eal~lLa~~sgGdlR 216 (824)
T PRK07764 198 PVE---PGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCC---HHHHHHHHHHcCCCHH
Confidence 112 2456778889999773
No 157
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=50.82 E-value=1.4e+02 Score=30.53 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=59.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhc-ccCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATM-RAVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+.+=++|+||+........+++...+-+-.+++.+|++|.+ ..+.... +....+++.++++++..+.+.... ..
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~--~~-- 164 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN--KE-- 164 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC--CC--
Confidence 36778889998665544555666566555566777765644 3444332 234578999999999887776541 11
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
+ +.+..++...+|.=-|+..++
T Consensus 165 ---~---~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 165 ---K---EYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred ---h---hHHHHHHHHcCCHHHHHHHHh
Confidence 1 445666666777445555543
No 158
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=50.46 E-value=51 Score=37.51 Aligned_cols=101 Identities=13% Similarity=0.115 Sum_probs=62.7
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|+|..-.....+.+...+-......++|++|.+.+ +..... --..+.+.+++.++..+.+....-... .
T Consensus 118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i 196 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-I 196 (647)
T ss_pred CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 4566999999977655566666555544444556665555543 332222 235799999999999988877542111 1
Q ss_pred CCChhHHHHHHHHHHHcCCchh-HHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL-AAKTL 140 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl-al~~~ 140 (777)
.. -......|++.++|.+- |+..+
T Consensus 197 ~~---e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 197 PF---EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 12556788899999774 44444
No 159
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=50.39 E-value=1e+02 Score=33.90 Aligned_cols=96 Identities=14% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|+|..-.....+.+...+.+..+..++|++|.+ ..+..... --..+++.+++.++..+.+...+.....
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi- 193 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI- 193 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-
Confidence 45558999999665445566666666555556777765543 44444332 2356899999999988888877643221
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
..+ .+.+..|++.++|-+-
T Consensus 194 ~i~---~eAL~lIa~~s~GslR 212 (491)
T PRK14964 194 EHD---EESLKLIAENSSGSMR 212 (491)
T ss_pred CCC---HHHHHHHHHHcCCCHH
Confidence 111 2556788888888764
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.20 E-value=87 Score=35.72 Aligned_cols=96 Identities=13% Similarity=0.114 Sum_probs=60.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEe-ecHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++=++|+|++..-.....+.+...+.....++.+|++| +...+..... -...+++.+++.++..+.+...+-... .
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i 198 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-I 198 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-C
Confidence 345578999996655555666666665554566666555 4444443322 235789999999998888877653221 1
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
... .+.+..|++.++|-.-
T Consensus 199 ~i~---~~al~~La~~s~gdlr 217 (614)
T PRK14971 199 TAE---PEALNVIAQKADGGMR 217 (614)
T ss_pred CCC---HHHHHHHHHHcCCCHH
Confidence 111 2567888888898664
No 161
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.88 E-value=1e+02 Score=35.18 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=59.4
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEe-ecHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+.+-++|+|++..-.....+.+...+..-...+.+|++| +-..+..... ....+++.+++.++....+...+.... .
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i 204 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-I 204 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-C
Confidence 344578999996654445556665555544455655555 4444443322 335789999999988777766542211 1
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAK 138 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~ 138 (777)
... .+.+..+++.++|-. .|+.
T Consensus 205 ~I~---~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 205 QID---ADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred CCC---HHHHHHHHHHhCCCHHHHHH
Confidence 122 256788888999854 4444
No 162
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.80 E-value=83 Score=35.76 Aligned_cols=99 Identities=14% Similarity=0.128 Sum_probs=61.5
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecH-HHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
.++-++|+|++..-.....+.+...+......+.+|++|.+. .+..... -...+.+..++.++..+.+...+.....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl- 197 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI- 197 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-
Confidence 456689999996544445555655554444556677666443 3333222 2246788899999888888776643221
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAK 138 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~ 138 (777)
... .+.+..+++.++|.+-.+.
T Consensus 198 ~i~---~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 198 NLE---PGALEAIARAATGSMRDAE 219 (585)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHH
Confidence 122 2567888999999885443
No 163
>PRK04132 replication factor C small subunit; Provisional
Probab=47.73 E-value=1e+02 Score=36.39 Aligned_cols=114 Identities=14% Similarity=0.131 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHhC------CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhccc-CCccccCC
Q 048758 22 DLNSLQVKLKERLS------GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMRA-VSGKTLKE 93 (777)
Q Consensus 22 ~~~~~~~~l~~~L~------~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~~-~~~~~l~~ 93 (777)
+++...+.+.+... .+.-++|+|+++.........+...+-.....+++|++|.+.. +...... -..+.+.+
T Consensus 609 gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ 688 (846)
T PRK04132 609 GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 688 (846)
T ss_pred cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCC
Confidence 34555555554432 1346999999987665566666665555455677777665543 3323222 35789999
Q ss_pred CChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCch-hHHHH
Q 048758 94 LSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLP-LAAKT 139 (777)
Q Consensus 94 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-lal~~ 139 (777)
++.++-.+.+...+-... ...+ .+....|++.++|.+ -||..
T Consensus 689 ls~~~i~~~L~~I~~~Eg-i~i~---~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 689 LRDEDIAKRLRYIAENEG-LELT---EEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CCHHHHHHHHHHHHHhcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 999988887776553211 1111 357888999999987 34433
No 164
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.60 E-value=57 Score=35.78 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=61.2
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+........+|++|.+ ..+..... .-..+++.+++.++....+...+....-
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi- 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI- 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-
Confidence 45669999999554333445555555444344555544443 33333222 2247889999999988888777633221
Q ss_pred CCChhHHHHHHHHHHHcC-CchhHHHHHHhh
Q 048758 114 NIPQSLKEVAEKIAKKCK-GLPLAAKTLGGL 143 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~-glPlal~~~~~~ 143 (777)
... .+....|++.++ +++.|+..+...
T Consensus 195 ~i~---~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 195 EID---REALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CCC---HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 122 255677777665 557777666553
No 165
>PRK04195 replication factor C large subunit; Provisional
Probab=45.80 E-value=2.4e+02 Score=31.22 Aligned_cols=163 Identities=15% Similarity=0.114 Sum_probs=83.7
Q ss_pred CeEEEEEeCCCccch----hchhhhccccCCCCCCcEEEEEeecHHH-Hh-hc-ccCCccccCCCChHhHHHHHHHhhcC
Q 048758 37 KKFLLVLDDLWNENY----NSWCTLSCPFGAGASGSKIVVTHRNQDV-AA-TM-RAVSGKTLKELSDDDCLRVLIQHSLG 109 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~----~~~~~~~~~~~~~~~gs~iiiTTR~~~v-~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 109 (777)
++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+..- .. .. .....+.+.+++.++....+...+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 677999999965321 223444433332 34457777744321 11 11 12346889999999988888776633
Q ss_pred CCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCC-CC--ChhHHHHHHhccccccccCccCchhhHhhcccC-CChh
Q 048758 110 ARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSG-KD--DLNDWEFVLNTNIWDLREDKCDILPTLRVSYHF-LPPQ 185 (777)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~-~~--~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~-L~~~ 185 (777)
..- ..+ .+....|++.++|-.-.+......+.. +. +.+.-+.+.. .+...+++.++..-+.. =...
T Consensus 176 egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~------~d~~~~if~~l~~i~~~k~~~~ 245 (482)
T PRK04195 176 EGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR------RDREESIFDALDAVFKARNADQ 245 (482)
T ss_pred cCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc------CCCCCCHHHHHHHHHCCCCHHH
Confidence 221 222 267888888988876444333222322 21 1222222221 12234566666655542 1222
Q ss_pred hHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccC
Q 048758 186 LKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQ 219 (777)
Q Consensus 186 ~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~ 219 (777)
....+.. ..++. ..+-.|+.+++...
T Consensus 246 a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 246 ALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred HHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 2222222 12232 35667898888764
No 166
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.90 E-value=1e+02 Score=34.31 Aligned_cols=96 Identities=11% Similarity=0.097 Sum_probs=57.4
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecH-HHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
++.-++|+|+|..-.....+.+...+......+++|++|.+. .+..... --..+++.+++.++..+.+...+-... .
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i 196 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-V 196 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-C
Confidence 445589999997755556666665555544567777665544 3332221 124688999998887766555442211 1
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
... ......|++.++|-+-
T Consensus 197 ~~~---~~al~~ia~~s~GslR 215 (509)
T PRK14958 197 EFE---NAALDLLARAANGSVR 215 (509)
T ss_pred CCC---HHHHHHHHHHcCCcHH
Confidence 111 2456678888888774
No 167
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.51 E-value=17 Score=21.73 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=8.2
Q ss_pred CccCeeeccCCccc
Q 048758 368 KHLRCLNLSRTRIQ 381 (777)
Q Consensus 368 ~~L~~L~L~~~~i~ 381 (777)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666554
No 168
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=41.92 E-value=1.2e+02 Score=34.33 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=60.5
Q ss_pred eEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecH-HHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCCC
Q 048758 38 KFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFNI 115 (777)
Q Consensus 38 ~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~-~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~ 115 (777)
+=++|+|++..-....++.+...+........+|++|... .+..... ....+++.+++.++..+.+...+..... ..
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~I 198 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KI 198 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CC
Confidence 3369999996654455556665554444455666555433 3332222 2357899999999998888776532211 12
Q ss_pred ChhHHHHHHHHHHHcCCch-hHHHHHHh
Q 048758 116 PQSLKEVAEKIAKKCKGLP-LAAKTLGG 142 (777)
Q Consensus 116 ~~~~~~~~~~i~~~c~glP-lal~~~~~ 142 (777)
+ .+.+..+++.++|-+ .|+..+-.
T Consensus 199 s---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 199 E---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred C---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 255778888899865 45544443
No 169
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=41.45 E-value=1.5e+02 Score=33.56 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=61.9
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEe-ecHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
.++-++|+|++..-.....+.+...+-....++++|++| ....+..... --..+++.+++.++..+.+...+-....
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi- 209 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV- 209 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 344578999996654445566665555544566776555 4344443332 2247899999999998888776532211
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAK 138 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~ 138 (777)
... .+....|++.++|-+-.+.
T Consensus 210 ~i~---~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 210 EVE---DEALALIARAAEGSVRDGL 231 (598)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHH
Confidence 122 2567788889999885443
No 170
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.88 E-value=85 Score=35.05 Aligned_cols=101 Identities=11% Similarity=0.109 Sum_probs=60.5
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+-.....+.+|++|.+.+ +..... --..+++.+++.++..+.+...+.... .
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i 196 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-I 196 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-C
Confidence 4566899999976554445555555555445566776665443 222211 124689999999998887766542211 1
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAKTL 140 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~~~ 140 (777)
... ...+..|++.++|.+ -|+..+
T Consensus 197 ~~~---~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 197 PFD---ATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 111 255677888889976 344444
No 171
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=40.61 E-value=1.4e+02 Score=34.43 Aligned_cols=102 Identities=14% Similarity=0.112 Sum_probs=61.4
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEe-ecHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|+|..-....+.++...+-.......+|++| +-..+..... ....+++.+++.++..+.+...+-...-
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI- 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENI- 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-
Confidence 455688999996655455666665554443445555444 4444443322 2247899999999988888765422111
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAKTLG 141 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~~~~ 141 (777)
... .+.+..+++.++|-+ .|+..+.
T Consensus 196 ~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 196 SYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 111 245778888998865 4554443
No 172
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=40.47 E-value=71 Score=34.74 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=40.4
Q ss_pred EEEEEeCCCccc-----hhchhhhccccCCCCCCcEEEEEeecH-H--------HHhhcccCCccccCCCChHhHHHHHH
Q 048758 39 FLLVLDDLWNEN-----YNSWCTLSCPFGAGASGSKIVVTHRNQ-D--------VAATMRAVSGKTLKELSDDDCLRVLI 104 (777)
Q Consensus 39 ~LlvLDdv~~~~-----~~~~~~~~~~~~~~~~gs~iiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 104 (777)
-++++||+..-. ..++..+...+.. .|..||+||... . +..++...-++.+++++.++-.+++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 378889984321 1111222211212 345688888542 2 22333344578899999999999998
Q ss_pred HhhcC
Q 048758 105 QHSLG 109 (777)
Q Consensus 105 ~~~~~ 109 (777)
.++-.
T Consensus 282 ~k~~~ 286 (445)
T PRK12422 282 RKAEA 286 (445)
T ss_pred HHHHH
Confidence 88743
No 173
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=40.29 E-value=29 Score=37.37 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=50.9
Q ss_pred EEEEeCCCccchh--chhhhccccCC-CCCCcEEEEEeecH-H--------HHhhcccCCccccCCCChHhHHHHHHHhh
Q 048758 40 LLVLDDLWNENYN--SWCTLSCPFGA-GASGSKIVVTHRNQ-D--------VAATMRAVSGKTLKELSDDDCLRVLIQHS 107 (777)
Q Consensus 40 LlvLDdv~~~~~~--~~~~~~~~~~~-~~~gs~iiiTTR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 107 (777)
+|||||+..-... ..+.+...+.. ...|..+|+||... . +..++.....+.+++.+.++-.+++...+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 7889999542111 11112222211 12345688877542 2 22223333468899999999999999887
Q ss_pred cCCCCCCCChhHHHHHHHHHHHcCCchh
Q 048758 108 LGARYFNIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~i~~~c~glPl 135 (777)
-.... ..+ +++...|++.+.|..-
T Consensus 282 ~~~~~-~l~---~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 282 EEEGL-ELP---DEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHcCC-CCC---HHHHHHHHHhcCCCHH
Confidence 44322 222 2566666677676554
No 174
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.10 E-value=94 Score=32.87 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=55.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-....++.+...+......+.+|++|.. ..+..... ....+++.+++.++....+...+....-
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~- 185 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI- 185 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-
Confidence 44557999999554333455554444333344556655533 22222211 2246889999999988888776643221
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
..+ .+.+..+++.++|.+-
T Consensus 186 ~i~---~~al~~l~~~~~gdlr 204 (367)
T PRK14970 186 KFE---DDALHIIAQKADGALR 204 (367)
T ss_pred CCC---HHHHHHHHHhCCCCHH
Confidence 122 2677778888888654
No 175
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.26 E-value=3.8e+02 Score=29.57 Aligned_cols=91 Identities=19% Similarity=0.239 Sum_probs=58.6
Q ss_pred HhCCCeEEEEEeCCCccchhchhhhccccC---------------CCCCCcEEEEEeecHHHHhhcc----cCCccccCC
Q 048758 33 RLSGKKFLLVLDDLWNENYNSWCTLSCPFG---------------AGASGSKIVVTHRNQDVAATMR----AVSGKTLKE 93 (777)
Q Consensus 33 ~L~~~~~LlvLDdv~~~~~~~~~~~~~~~~---------------~~~~gs~iiiTTR~~~v~~~~~----~~~~~~l~~ 93 (777)
.-++.--.||+||+ +...+|-.++..|. +.|+.--|+-||....+...|+ -...|+|+-
T Consensus 594 AYkS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpn 671 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPN 671 (744)
T ss_pred hhcCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCc
Confidence 33567789999999 55566666554432 2233333555888888888886 246789999
Q ss_pred CCh-HhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHc
Q 048758 94 LSD-DDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKC 130 (777)
Q Consensus 94 L~~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 130 (777)
++. ++..+.++..- ...++.....+++...+|
T Consensus 672 l~~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 672 LTTGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred cCchHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 886 77888777653 122344455666666655
No 176
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=36.09 E-value=56 Score=35.55 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=51.4
Q ss_pred CeEEEEEeCCCccc-----hhchhhhccccCCCCCCcEEEEEee-cHHHHh--------hcccCCccccCCCChHhHHHH
Q 048758 37 KKFLLVLDDLWNEN-----YNSWCTLSCPFGAGASGSKIVVTHR-NQDVAA--------TMRAVSGKTLKELSDDDCLRV 102 (777)
Q Consensus 37 ~~~LlvLDdv~~~~-----~~~~~~~~~~~~~~~~gs~iiiTTR-~~~v~~--------~~~~~~~~~l~~L~~~ea~~L 102 (777)
+.-+||+||+..-. ..++..+...+.. .|..||+||. .+.-.. ++...-++.+++.+.++-.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 34589999995321 1122222222222 2446888874 433222 233345678999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHHcCCc
Q 048758 103 LIQHSLGARYFNIPQSLKEVAEKIAKKCKGL 133 (777)
Q Consensus 103 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 133 (777)
+.+.+.... ...+ +++...|++.+.|.
T Consensus 272 L~~~~~~~~-~~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 272 ARKMLEIEH-GELP---EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHhcC-CCCC---HHHHHHHHhccccC
Confidence 988874322 1222 25666677666654
No 177
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=36.05 E-value=2.4e+02 Score=29.30 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=47.4
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHh
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQH 106 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~ 106 (777)
+.+=++|+|++........+.+...+-+-..++.+|++|.+.. +..... --..+++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3445789999966555555566666655556777887776644 232222 2357899999999998888654
No 178
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=35.92 E-value=43 Score=30.87 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCCeE-EEEEeCCCc---cchhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 26 LQVKLKERLSGKKF-LLVLDDLWN---ENYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 26 ~~~~l~~~L~~~~~-LlvLDdv~~---~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
+-+..++.+....| |+|||.+-. -...+.+.+...+.....+.-||+|-|+..
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p 159 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMP 159 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 34455666766666 999999822 122344455555555556678999999864
No 179
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.76 E-value=2.3e+02 Score=32.41 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=58.9
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+........+|++|.+.+ +..... --..+++..++.++..+.+.+.+.....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi- 198 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI- 198 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-
Confidence 3455889999976554556666655554444555565554443 332222 2245788889888888777765532211
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAK 138 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~ 138 (777)
... .+.+..+++.++|.+....
T Consensus 199 ~is---~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 199 EIE---PEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHH
Confidence 111 2557888889998775443
No 180
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=35.34 E-value=2.2e+02 Score=32.15 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=60.2
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-HHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-QDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-....++.+...+........+|++|.+ ..+..... .-..++..+++.++..+.+...+....-
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi- 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI- 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 55668999999665555566666666554456666666544 33333222 2245889999999888888776533211
Q ss_pred CCChhHHHHHHHHHHHcCCchh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPl 135 (777)
... .+.+..|++.++|.+-
T Consensus 197 ~id---~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 197 KYE---DEALKWIAYKSTGSVR 215 (563)
T ss_pred CCC---HHHHHHHHHHcCCCHH
Confidence 111 2567778888888774
No 181
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=35.22 E-value=35 Score=31.35 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCeE-EEEEeCCCc---cchhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 25 SLQVKLKERLSGKKF-LLVLDDLWN---ENYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 25 ~~~~~l~~~L~~~~~-LlvLDdv~~---~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
++-+..++.+...+| |||||.|-. ....+.+.+...+.......-||+|-|+..
T Consensus 83 ~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 83 EGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 344566677777777 999999822 112334444444445556789999999986
No 182
>PRK04966 hypothetical protein; Provisional
Probab=33.86 E-value=1e+02 Score=23.45 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=25.4
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEEEeCC
Q 048758 19 NDDDLNSLQVKLKERLSGKKFLLVLDDL 46 (777)
Q Consensus 19 ~~~~~~~~~~~l~~~L~~~~~LlvLDdv 46 (777)
...+.+..++.+++.|++.+.+||.|..
T Consensus 31 ~E~sl~~kv~qv~~qL~~G~~viv~se~ 58 (72)
T PRK04966 31 HERSLEQKVADVKRQLQSGEAVLVWSEL 58 (72)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4577899999999999999999999987
No 183
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.79 E-value=2.1e+02 Score=31.56 Aligned_cols=98 Identities=9% Similarity=0.108 Sum_probs=57.4
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEe-ecHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+....+...+|++| +-..+..... ....+.+.+++.++..+.+...+-...-
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi- 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI- 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence 456699999996554444455555554444455555555 3333332221 2246889999999988877776532111
Q ss_pred CCChhHHHHHHHHHHHcCCchhHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal 137 (777)
... .+.+..+++.++|.+-.+
T Consensus 197 ~id---~~al~~La~~s~G~lr~a 217 (486)
T PRK14953 197 EYE---EKALDLLAQASEGGMRDA 217 (486)
T ss_pred CCC---HHHHHHHHHHcCCCHHHH
Confidence 111 255677778888866433
No 184
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=33.62 E-value=43 Score=29.19 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=26.3
Q ss_pred CCCeEEEEEeCCCcc---chhchhhhccccCCC---CCCcEEEEEeecHH
Q 048758 35 SGKKFLLVLDDLWNE---NYNSWCTLSCPFGAG---ASGSKIVVTHRNQD 78 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~---~~~~~~~~~~~~~~~---~~gs~iiiTTR~~~ 78 (777)
..+..++|+||++.. ....+.......... ..+.+||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 456789999999753 122233333333221 36788888887653
No 185
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=33.22 E-value=3e+02 Score=27.99 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=75.3
Q ss_pred hhHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhCCCeE-EEEEeCCCcc------chhchhhhccccCCCCCCcEEEEEe
Q 048758 2 FRISKSILNSVAKDQSNNDDDLNSLQVKLKERLSGKKF-LLVLDDLWNE------NYNSWCTLSCPFGAGASGSKIVVTH 74 (777)
Q Consensus 2 ~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~~~~~-LlvLDdv~~~------~~~~~~~~~~~~~~~~~gs~iiiTT 74 (777)
.++...|+..++.+-. ...+.......+.+.++.-.+ +||+|.+.+- ++.+.-.....+.+.-.=+-|.+-|
T Consensus 110 ~~~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 110 RRFYSAILEALGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHHHHHHhCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 3577889999998875 556677777777788876544 8899999441 1112222222333333445566666
Q ss_pred ecHHHHhhccc-----CCccccCCCChH-hHHHHHHHhh--cCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 048758 75 RNQDVAATMRA-----VSGKTLKELSDD-DCLRVLIQHS--LGARYFNIPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 75 R~~~v~~~~~~-----~~~~~l~~L~~~-ea~~Lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~glPlal 137 (777)
++.--+-.... -..+.++.-..+ |..+|+..-. ..-+..+. -.-.++++.|...++|..=-+
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHHH
Confidence 55443322221 123555555544 4455543332 22222122 223589999999999987443
No 186
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.69 E-value=2.7e+02 Score=31.51 Aligned_cols=103 Identities=10% Similarity=0.081 Sum_probs=63.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEee-cHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHR-NQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR-~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|++..-.....+.+...+........+|++|. ...+..... -...+++.+++.++..+.+...+.... .
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-V 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-C
Confidence 4455889999977665666666666655555666665554 444443322 235789999999998887776553211 1
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHHHHHh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAKTLGG 142 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~~~~~ 142 (777)
... .+.+..|++.++|-+ -|+..+-.
T Consensus 196 ~i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 196 VVD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 122 245677888889876 45544444
No 187
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=32.58 E-value=46 Score=30.59 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=34.0
Q ss_pred HHHHHHHHHhCCCeE-EEEEeCCCc---cchhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 25 SLQVKLKERLSGKKF-LLVLDDLWN---ENYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 25 ~~~~~l~~~L~~~~~-LlvLDdv~~---~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
++-+..++.+...+| |+|||.+-. -...+.+.+...+.....+.-||+|-|+..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 344455666666676 999999821 112233344444545556678999999874
No 188
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=32.43 E-value=54 Score=30.72 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCeE-EEEEeCCCc---cchhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 26 LQVKLKERLSGKKF-LLVLDDLWN---ENYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 26 ~~~~l~~~L~~~~~-LlvLDdv~~---~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
+-+..++.+.+.+| ++|||.+-. -...+.+.+...+.....+.-||+|-|+..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 34455666666666 999999822 112334455555555556678999999874
No 189
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=31.38 E-value=1.3e+02 Score=30.45 Aligned_cols=72 Identities=7% Similarity=0.021 Sum_probs=41.9
Q ss_pred CeEEEEEeCCCcc---------chhchhhhccccCCCCCCcEEEEEeecHHHHhhcc--------cCCccccCCCChHhH
Q 048758 37 KKFLLVLDDLWNE---------NYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMR--------AVSGKTLKELSDDDC 99 (777)
Q Consensus 37 ~~~LlvLDdv~~~---------~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~~--------~~~~~~l~~L~~~ea 99 (777)
..-+|+||++..- .......+...+.....+.+||++|.....-..+. ....+++++++.+|-
T Consensus 121 ~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 3468899999521 01122334444444445566666664332211111 134689999999999
Q ss_pred HHHHHHhhc
Q 048758 100 LRVLIQHSL 108 (777)
Q Consensus 100 ~~Lf~~~~~ 108 (777)
.+++...+-
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 999888763
No 190
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=31.26 E-value=92 Score=34.08 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=53.0
Q ss_pred EEEEEeCCCccch-----hchhhhccccCCCCCCcEEEEEeecHH---------HHhhcccCCccccCCCChHhHHHHHH
Q 048758 39 FLLVLDDLWNENY-----NSWCTLSCPFGAGASGSKIVVTHRNQD---------VAATMRAVSGKTLKELSDDDCLRVLI 104 (777)
Q Consensus 39 ~LlvLDdv~~~~~-----~~~~~~~~~~~~~~~gs~iiiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 104 (777)
-+||||||..-.. .++..+...+-. .|..||+||.... +..++....++++++++.++-.+++.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~ 290 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILK 290 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHH
Confidence 3889999943211 111122212222 3445888776432 22333344578999999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCchh
Q 048758 105 QHSLGARYFNIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 135 (777)
..+-.... ..++ ++...|++.+.|..-
T Consensus 291 ~~~~~~~~-~l~~---e~l~~ia~~~~~~~R 317 (450)
T PRK00149 291 KKAEEEGI-DLPD---EVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHHcCC-CCCH---HHHHHHHcCcCCCHH
Confidence 98753221 2222 567777777777654
No 191
>CHL00181 cbbX CbbX; Provisional
Probab=31.10 E-value=1.8e+02 Score=29.49 Aligned_cols=71 Identities=7% Similarity=0.042 Sum_probs=42.0
Q ss_pred eEEEEEeCCCcc---------chhchhhhccccCCCCCCcEEEEEeecHHHHhhc--------ccCCccccCCCChHhHH
Q 048758 38 KFLLVLDDLWNE---------NYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATM--------RAVSGKTLKELSDDDCL 100 (777)
Q Consensus 38 ~~LlvLDdv~~~---------~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~--------~~~~~~~l~~L~~~ea~ 100 (777)
.-+|+||++..- .......+...+.....+.+||+++....+.... .....+.+++++.+|..
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 458999999531 1112223333343444556777777543332111 12356899999999999
Q ss_pred HHHHHhhc
Q 048758 101 RVLIQHSL 108 (777)
Q Consensus 101 ~Lf~~~~~ 108 (777)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99888764
No 192
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.04 E-value=1.2e+02 Score=34.28 Aligned_cols=101 Identities=13% Similarity=0.134 Sum_probs=59.3
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEe-ecHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTH-RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTT-R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
.++-++|+|+|..-.....+.+...+-+......+|++| .-..+..... --..+++.+++.++..+.+...+-... .
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i 196 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-I 196 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-C
Confidence 344578899996654445555655554444456666555 4444443332 224688899999888877766542211 1
Q ss_pred CCChhHHHHHHHHHHHcCCch-hHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLP-LAAKTL 140 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glP-lal~~~ 140 (777)
... .+.+..+++.++|-. .|+..+
T Consensus 197 ~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 197 SIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 111 256777888888855 555444
No 193
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=30.81 E-value=33 Score=33.15 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=28.5
Q ss_pred CeEEEEEeCCCccc-hhchhhhccccCCCCCCcEEEEEeecHHHHhhcc
Q 048758 37 KKFLLVLDDLWNEN-YNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMR 84 (777)
Q Consensus 37 ~~~LlvLDdv~~~~-~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~~ 84 (777)
..-++|||||...- ......+...+.....++.+||||.++.+...+.
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34489999995531 1233344444555556688999999998887753
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=28.72 E-value=1.7e+02 Score=30.31 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=40.2
Q ss_pred EEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHh
Q 048758 40 LLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQH 106 (777)
Q Consensus 40 LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~ 106 (777)
++|+|++..-....-+.+...+.....+..+|+||.+.. +..... --..+.+.+++.+++.+-+...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 445688755443343444443333334566787887765 333322 2357899999999988877654
No 195
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=28.55 E-value=4.9e+02 Score=25.73 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=67.8
Q ss_pred HHHHHHHhhcCCCCCCCCCHHHHHHHHHHHh-----CCCe-EEEEEeCCCccchhchhhhccccC---CCCCCcEEEEEe
Q 048758 4 ISKSILNSVAKDQSNNDDDLNSLQVKLKERL-----SGKK-FLLVLDDLWNENYNSWCTLSCPFG---AGASGSKIVVTH 74 (777)
Q Consensus 4 l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L-----~~~~-~LlvLDdv~~~~~~~~~~~~~~~~---~~~~gs~iiiTT 74 (777)
+..-+..++... ....+....+.+.+.| +++| +.++.||..+-....++.+.-... +++.--+|+..-
T Consensus 95 ~~~ai~~~l~~~---p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~G 171 (269)
T COG3267 95 LLEAIVADLESQ---PKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIG 171 (269)
T ss_pred HHHHHHHHhccC---ccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecC
Confidence 445555666552 2234443333333333 4677 999999986544444443332111 111111233322
Q ss_pred ecHHHH--------hhcc-cCCc-cccCCCChHhHHHHHHHhhcCCC-CCCCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 75 RNQDVA--------ATMR-AVSG-KTLKELSDDDCLRVLIQHSLGAR-YFNIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 75 R~~~v~--------~~~~-~~~~-~~l~~L~~~ea~~Lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
. +++. .... -..+ |++.|++.++....+..+.-+.. +....+ .+....|.....|.|.+|..++
T Consensus 172 q-p~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~--~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 172 Q-PKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFS--DDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred C-cccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCC--hhHHHHHHHHhccchHHHHHHH
Confidence 1 1111 1111 1123 89999999988777766642221 111111 2556667778899999887665
No 196
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.63 E-value=12 Score=40.38 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=49.1
Q ss_pred CCCCCCCeEEEeecCCCCCCcccC-CCCCCCeeEEEEeCCCCC-CCCCCCCC--CCCcceeeecCCCCceEeCcc--ccc
Q 048758 520 KPHRDVQELTITGYSGTKFPIWLG-DSSFSKLVQLKLEGCGKC-TSLPSVGQ--LPFLKELLISGMDGVKIVGLE--FYG 593 (777)
Q Consensus 520 ~~~~~L~~L~l~~~~~~~~p~~~~-~~~l~~L~~L~L~~~~~~-~~l~~~~~--l~~L~~L~L~~~~~l~~~~~~--~~~ 593 (777)
.+.+.+.++.+++|.+..+...-. ....|+|+.|+|++|... ..-+++.. ...|++|.+.||+..+..... +..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 356778888888887654432110 124778888888887332 22222222 234788888887655433211 100
Q ss_pred CCCCCCCCCCceeeccCc
Q 048758 594 NICSVPFPSLEALSFSDM 611 (777)
Q Consensus 594 ~~~~~~~~~L~~L~l~~~ 611 (777)
.....||+|..|+=...
T Consensus 295 -~i~~~FPKL~~LDG~ev 311 (585)
T KOG3763|consen 295 -AIRELFPKLLRLDGVEV 311 (585)
T ss_pred -HHHHhcchheeecCccc
Confidence 01123777777764443
No 197
>PRK00304 hypothetical protein; Provisional
Probab=26.42 E-value=1.7e+02 Score=22.57 Aligned_cols=28 Identities=11% Similarity=0.348 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEEEeCC
Q 048758 19 NDDDLNSLQVKLKERLSGKKFLLVLDDL 46 (777)
Q Consensus 19 ~~~~~~~~~~~l~~~L~~~~~LlvLDdv 46 (777)
+..+.++.++.+++.|++...+||.|..
T Consensus 30 ~E~sL~~kv~qv~~qL~~G~~vIvfse~ 57 (75)
T PRK00304 30 DETPLETRVLRVRQALTKGQAVILFDPE 57 (75)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEECCC
Confidence 4556788999999999999999999998
No 198
>PRK08116 hypothetical protein; Validated
Probab=25.18 E-value=48 Score=33.24 Aligned_cols=46 Identities=26% Similarity=0.347 Sum_probs=24.4
Q ss_pred HHHHhCCCeEEEEEeCCCccchhchh--hhccccCC-CCCCcEEEEEeec
Q 048758 30 LKERLSGKKFLLVLDDLWNENYNSWC--TLSCPFGA-GASGSKIVVTHRN 76 (777)
Q Consensus 30 l~~~L~~~~~LlvLDdv~~~~~~~~~--~~~~~~~~-~~~gs~iiiTTR~ 76 (777)
+.+.+.+-. ||||||+-.....+|. .+...+.. ...|..+||||..
T Consensus 172 ~~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 172 IIRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred HHHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 344455444 8999999433223332 23222221 2345678999854
No 199
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=24.67 E-value=1e+02 Score=28.60 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCeE-EEEEeCCCc---cchhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 25 SLQVKLKERLSGKKF-LLVLDDLWN---ENYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 25 ~~~~~l~~~L~~~~~-LlvLDdv~~---~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
.+-+.-++.+.+.+| |+|||.+-- -....++.+...+...-...-||||-|...
T Consensus 109 ~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap 166 (198)
T COG2109 109 AGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAP 166 (198)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCC
Confidence 344556677788787 999999821 112345555555555556688999998864
No 200
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=24.07 E-value=1.9e+02 Score=29.66 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCcc-chhchhhhccccCCCCCCcEEEEEeecHHHH-hhcc-cCCccccCCCChHhHHHHHHH
Q 048758 37 KKFLLVLDDLWNE-NYNSWCTLSCPFGAGASGSKIVVTHRNQDVA-ATMR-AVSGKTLKELSDDDCLRVLIQ 105 (777)
Q Consensus 37 ~~~LlvLDdv~~~-~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~-~~~~-~~~~~~l~~L~~~ea~~Lf~~ 105 (777)
.+-++|+||+... .......+...+.....++++|+||....-. .... .-..+.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 4557899999654 1122223333344445677899988654321 1111 113566777777777766544
No 201
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=21.46 E-value=1.5e+02 Score=22.55 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHhCCCeEEEEEeCC
Q 048758 19 NDDDLNSLQVKLKERLSGKKFLLVLDDL 46 (777)
Q Consensus 19 ~~~~~~~~~~~l~~~L~~~~~LlvLDdv 46 (777)
...+.++.+..+++.|++...+|+.|..
T Consensus 31 ~E~sL~~kv~qv~~qL~~G~avI~~se~ 58 (70)
T PF06794_consen 31 QELSLEEKVEQVKQQLKSGEAVIVFSEL 58 (70)
T ss_dssp ----HHHHHHHHHHHHHTTSEEEEE-TT
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEECCc
Confidence 3566789999999999999999999997
No 202
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=21.13 E-value=2.7e+02 Score=29.75 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=30.2
Q ss_pred CcEEEEEeecHHHHhhc-----ccCCccccCCCChHhHHHHHHHhhcC
Q 048758 67 GSKIVVTHRNQDVAATM-----RAVSGKTLKELSDDDCLRVLIQHSLG 109 (777)
Q Consensus 67 gs~iiiTTR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~~~~ 109 (777)
+.+||.||...+..... .-+..+.+++++.++..++|..+..+
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 56788788765433221 12456899999999999999987643
No 203
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.06 E-value=1.6e+02 Score=19.74 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=4.9
Q ss_pred cCCcccEEee
Q 048758 724 LPCRLQFLEL 733 (777)
Q Consensus 724 l~~~L~~L~l 733 (777)
+|+++++|.+
T Consensus 10 iP~~l~~L~~ 19 (44)
T PF05725_consen 10 IPSSLKSLIF 19 (44)
T ss_pred eCCCCeEEEE
Confidence 3445555555
No 204
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=21.03 E-value=68 Score=29.22 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHhC-----CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 22 DLNSLQVKLKERLS-----GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 22 ~~~~~~~~l~~~L~-----~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
.+++.. .+.+.+. +++=.+|+||++.......+++...+-....++++|++|++.+
T Consensus 83 ~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 83 KIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 344444 5665553 3455899999987766777777777666667889999888775
No 205
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=20.05 E-value=1.5e+02 Score=25.23 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=22.6
Q ss_pred eEEEEEeCCCccchhc-----------hhhhccccCCCC---CCcEEEEEeecH
Q 048758 38 KFLLVLDDLWNENYNS-----------WCTLSCPFGAGA---SGSKIVVTHRNQ 77 (777)
Q Consensus 38 ~~LlvLDdv~~~~~~~-----------~~~~~~~~~~~~---~gs~iiiTTR~~ 77 (777)
+.+|++||++.-.... ...+...+.... .+..||.||...
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCCh
Confidence 7999999995533222 333333333322 345677777663
Done!