Query 048758
Match_columns 777
No_of_seqs 333 out of 3288
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 22:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.1E-32 1E-36 303.0 17.0 250 2-271 201-472 (549)
2 3vq2_A TLR4, TOLL-like recepto 100.0 3.5E-30 1.2E-34 293.4 27.5 434 286-769 30-539 (606)
3 3rgz_A Protein brassinosteroid 100.0 2.3E-30 8E-35 301.5 19.5 443 286-774 198-728 (768)
4 3rgz_A Protein brassinosteroid 100.0 3.9E-30 1.3E-34 299.6 15.6 394 341-768 197-698 (768)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-28 4E-33 280.9 25.5 415 313-767 32-514 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-27 4.9E-32 280.9 30.0 451 286-775 22-528 (844)
7 2z63_A TOLL-like receptor 4, v 100.0 9.3E-28 3.2E-32 271.6 26.2 437 286-768 26-536 (570)
8 3t6q_A CD180 antigen; protein- 100.0 1.1E-27 3.6E-32 273.0 26.7 434 286-760 31-533 (606)
9 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-27 3.8E-32 267.4 24.1 406 313-762 21-480 (520)
10 1ziw_A TOLL-like receptor 3; i 100.0 6.3E-27 2.2E-31 270.3 29.2 456 286-771 23-580 (680)
11 4eco_A Uncharacterized protein 100.0 8E-28 2.7E-32 273.5 20.3 349 379-761 194-598 (636)
12 4eco_A Uncharacterized protein 100.0 6.3E-28 2.1E-32 274.3 18.9 372 336-764 198-633 (636)
13 4ecn_A Leucine-rich repeat pro 100.0 3.9E-27 1.3E-31 271.7 24.8 341 379-769 436-824 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 1.8E-27 6E-32 269.3 21.6 399 337-770 45-513 (570)
15 3t6q_A CD180 antigen; protein- 100.0 2E-26 6.7E-31 262.5 29.1 415 314-763 34-513 (606)
16 4ecn_A Leucine-rich repeat pro 99.9 1.7E-27 5.8E-32 274.7 19.5 344 337-738 441-839 (876)
17 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-26 4.1E-31 261.1 22.5 445 287-767 25-514 (549)
18 1ziw_A TOLL-like receptor 3; i 99.9 1.2E-25 4.2E-30 259.5 27.4 246 313-581 25-306 (680)
19 2z81_A CD282 antigen, TOLL-lik 99.9 3.2E-26 1.1E-30 257.5 20.6 154 600-768 309-490 (549)
20 2z7x_B TOLL-like receptor 1, v 99.9 6E-26 2E-30 253.4 22.4 413 286-742 19-484 (520)
21 3j0a_A TOLL-like receptor 5; m 99.9 2E-25 6.7E-30 262.8 26.2 432 286-764 46-561 (844)
22 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-24 4.8E-29 244.2 26.2 405 313-764 52-511 (562)
23 1o6v_A Internalin A; bacterial 99.9 1.1E-24 3.8E-29 238.9 23.7 322 340-761 64-386 (466)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.4E-25 2.9E-29 246.1 23.2 415 286-743 50-514 (562)
25 1jl5_A Outer protein YOPM; leu 99.9 8E-25 2.7E-29 237.5 18.9 365 336-776 26-419 (454)
26 4g8a_A TOLL-like receptor 4; l 99.9 2.8E-23 9.6E-28 238.3 30.8 146 286-442 50-200 (635)
27 1vt4_I APAF-1 related killer D 99.9 2.7E-25 9.3E-30 249.0 13.3 199 23-263 227-436 (1221)
28 3sfz_A APAF-1, apoptotic pepti 99.9 1.3E-24 4.4E-29 269.3 17.9 239 4-270 198-452 (1249)
29 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-23 1.1E-27 225.1 22.2 205 342-582 40-244 (457)
30 4fmz_A Internalin; leucine ric 99.9 3.6E-23 1.2E-27 218.0 21.5 302 341-761 41-344 (347)
31 3bz5_A Internalin-J, INLJ; leu 99.9 8.7E-24 3E-28 229.6 15.5 290 340-705 60-349 (457)
32 1jl5_A Outer protein YOPM; leu 99.9 6.3E-23 2.2E-27 222.6 21.7 349 343-767 10-373 (454)
33 3v47_A TOLL-like receptor 5B a 99.9 9.6E-23 3.3E-27 223.4 22.3 350 344-767 30-412 (455)
34 1o6v_A Internalin A; bacterial 99.9 1.9E-22 6.7E-27 221.0 23.2 337 287-705 45-385 (466)
35 3v47_A TOLL-like receptor 5B a 99.9 5.9E-22 2E-26 217.1 21.8 128 313-449 30-164 (455)
36 4g8a_A TOLL-like receptor 4; l 99.9 3.5E-22 1.2E-26 229.1 20.9 427 314-776 53-570 (635)
37 2id5_A Lingo-1, leucine rich r 99.9 1.2E-21 4.2E-26 215.8 24.0 292 344-737 32-331 (477)
38 3o6n_A APL1; leucine-rich repe 99.9 2.4E-21 8.1E-26 207.4 25.0 300 343-761 44-350 (390)
39 3o6n_A APL1; leucine-rich repe 99.9 4E-22 1.4E-26 213.4 16.0 301 311-705 43-349 (390)
40 3oja_B Anopheles plasmodium-re 99.9 8.9E-21 3E-25 214.3 24.6 300 343-761 50-356 (597)
41 4fmz_A Internalin; leucine ric 99.9 2.6E-21 8.8E-26 203.8 17.9 102 340-447 62-163 (347)
42 1z6t_A APAF-1, apoptotic prote 99.9 6E-22 2E-26 224.1 13.6 221 19-268 216-450 (591)
43 3oja_B Anopheles plasmodium-re 99.9 1.2E-21 4.1E-26 221.5 15.6 283 335-681 66-356 (597)
44 4fcg_A Uncharacterized protein 99.9 4.5E-21 1.6E-25 199.1 16.2 229 342-661 79-311 (328)
45 2id5_A Lingo-1, leucine rich r 99.8 9.9E-21 3.4E-25 208.5 17.7 274 337-662 49-331 (477)
46 1xku_A Decorin; proteoglycan, 99.8 1.4E-19 4.8E-24 188.8 21.4 93 345-444 32-126 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 1.2E-19 4.1E-24 189.4 18.9 93 345-444 34-128 (332)
48 4fcg_A Uncharacterized protein 99.8 1.4E-19 4.6E-24 187.9 17.3 82 366-449 79-160 (328)
49 3g06_A SSPH2 (leucine-rich rep 99.8 8.6E-19 2.9E-23 195.8 24.2 87 344-444 40-126 (622)
50 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.5E-26 222.2 -0.3 88 338-426 106-203 (592)
51 3ogk_B Coronatine-insensitive 99.8 1.9E-20 6.5E-25 212.6 2.8 327 311-662 110-474 (592)
52 1ogq_A PGIP-2, polygalacturona 99.8 2.1E-19 7.3E-24 185.4 8.8 108 338-445 70-180 (313)
53 1ogq_A PGIP-2, polygalacturona 99.8 1.5E-19 5.1E-24 186.5 7.3 149 288-444 50-202 (313)
54 2p1m_B Transport inhibitor res 99.8 4.7E-21 1.6E-25 217.7 -5.5 424 307-759 60-540 (594)
55 1z7x_W Ribonuclease inhibitor; 99.8 1.9E-20 6.6E-25 205.5 -1.1 290 329-662 13-352 (461)
56 1xku_A Decorin; proteoglycan, 99.8 7.6E-18 2.6E-22 175.6 17.1 267 344-662 52-330 (330)
57 2ft3_A Biglycan; proteoglycan, 99.8 6.9E-18 2.4E-22 176.1 15.4 99 344-447 54-155 (332)
58 2z80_A TOLL-like receptor 2, v 99.7 1.8E-17 6.3E-22 174.4 17.8 97 343-444 30-129 (353)
59 1z7x_W Ribonuclease inhibitor; 99.7 9.9E-20 3.4E-24 199.8 -4.7 155 288-448 3-179 (461)
60 2p1m_B Transport inhibitor res 99.7 3.4E-20 1.2E-24 210.6 -9.1 373 310-707 102-518 (594)
61 3o53_A Protein LRIM1, AGAP0063 99.7 6.6E-18 2.3E-22 174.7 7.8 59 366-426 32-91 (317)
62 2z80_A TOLL-like receptor 2, v 99.7 3E-17 1E-21 172.8 12.8 249 344-662 52-312 (353)
63 3zyi_A Leucine-rich repeat-con 99.7 1.3E-16 4.3E-21 174.0 18.0 100 344-446 75-178 (452)
64 3g06_A SSPH2 (leucine-rich rep 99.7 4.4E-16 1.5E-20 174.0 22.5 79 344-434 61-139 (622)
65 2z66_A Variable lymphocyte rec 99.7 3.8E-17 1.3E-21 168.4 12.4 99 344-445 28-132 (306)
66 3zyj_A Leucine-rich repeat-con 99.7 3E-16 1E-20 170.4 19.2 100 344-446 64-167 (440)
67 3zyi_A Leucine-rich repeat-con 99.7 3.7E-16 1.3E-20 170.3 18.7 96 346-446 56-154 (452)
68 3zyj_A Leucine-rich repeat-con 99.7 4.4E-16 1.5E-20 169.1 18.9 194 346-582 45-242 (440)
69 2z66_A Variable lymphocyte rec 99.7 1.5E-16 5.1E-21 163.9 10.8 106 337-444 45-155 (306)
70 1wwl_A Monocyte differentiatio 99.7 2.1E-16 7.2E-21 163.0 10.9 83 648-761 225-307 (312)
71 1ozn_A Reticulon 4 receptor; N 99.6 6.3E-16 2.2E-20 157.4 12.8 82 344-426 32-116 (285)
72 3oja_A Leucine-rich immune mol 99.6 4.8E-16 1.6E-20 170.2 12.6 55 345-401 35-90 (487)
73 3o53_A Protein LRIM1, AGAP0063 99.6 2E-16 6.9E-21 163.5 7.8 103 333-445 23-126 (317)
74 1wwl_A Monocyte differentiatio 99.6 1.8E-16 6.1E-21 163.5 5.9 102 342-444 93-206 (312)
75 1h6u_A Internalin H; cell adhe 99.6 1.3E-15 4.4E-20 156.5 12.1 99 341-446 38-136 (308)
76 1ozn_A Reticulon 4 receptor; N 99.6 1.4E-15 4.9E-20 154.7 11.2 218 347-612 14-236 (285)
77 3oja_A Leucine-rich immune mol 99.6 7.6E-16 2.6E-20 168.7 9.4 97 338-444 52-149 (487)
78 1p9a_G Platelet glycoprotein I 99.6 7E-15 2.4E-19 149.3 13.2 101 340-446 6-107 (290)
79 4ay9_X Follicle-stimulating ho 99.6 3.9E-14 1.3E-18 148.5 19.1 69 371-442 12-82 (350)
80 2o6q_A Variable lymphocyte rec 99.6 1.4E-14 4.8E-19 145.9 14.1 95 345-444 17-114 (270)
81 2xwt_C Thyrotropin receptor; s 99.6 5.4E-15 1.8E-19 146.1 10.6 197 345-611 32-236 (239)
82 2z62_A TOLL-like receptor 4, v 99.5 1.9E-14 6.6E-19 145.6 12.0 201 344-582 28-235 (276)
83 3rfs_A Internalin B, repeat mo 99.5 6.6E-14 2.3E-18 141.1 15.1 176 341-582 38-216 (272)
84 1h6u_A Internalin H; cell adhe 99.5 3.2E-14 1.1E-18 146.1 12.7 170 340-582 59-228 (308)
85 2xwt_C Thyrotropin receptor; s 99.5 1.3E-13 4.3E-18 136.2 15.8 198 523-763 31-239 (239)
86 1p9a_G Platelet glycoprotein I 99.5 3.1E-13 1.1E-17 137.2 18.8 195 364-662 6-206 (290)
87 2z62_A TOLL-like receptor 4, v 99.5 8.8E-14 3E-18 140.7 14.5 91 349-444 12-105 (276)
88 4ay9_X Follicle-stimulating ho 99.5 1.3E-13 4.5E-18 144.4 16.3 238 347-639 12-255 (350)
89 2ast_B S-phase kinase-associat 99.5 2.3E-15 7.8E-20 157.4 1.7 58 629-705 221-282 (336)
90 1h6t_A Internalin B; cell adhe 99.5 5.8E-14 2E-18 142.7 10.9 169 341-582 43-211 (291)
91 4glp_A Monocyte differentiatio 99.5 4.6E-14 1.6E-18 145.3 10.0 104 342-446 89-204 (310)
92 2o6q_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 137.1 13.8 75 368-446 16-92 (270)
93 2ast_B S-phase kinase-associat 99.5 6.9E-15 2.4E-19 153.7 2.7 104 340-444 64-173 (336)
94 1m9s_A Internalin B; cell inva 99.4 2.7E-13 9.3E-18 151.3 10.9 98 341-445 40-137 (605)
95 2ca6_A RAN GTPase-activating p 99.4 5.5E-15 1.9E-19 157.6 -3.0 88 518-612 211-314 (386)
96 3m19_A Variable lymphocyte rec 99.4 3.1E-12 1E-16 127.1 16.7 96 344-444 14-112 (251)
97 3rfs_A Internalin B, repeat mo 99.4 8.6E-13 2.9E-17 132.9 12.1 108 629-751 132-247 (272)
98 4ezg_A Putative uncharacterize 99.4 1E-12 3.5E-17 125.2 10.1 81 343-426 43-123 (197)
99 2ca6_A RAN GTPase-activating p 99.4 8.9E-15 3.1E-19 155.9 -4.9 256 334-641 22-314 (386)
100 3cvr_A Invasion plasmid antige 99.4 3.8E-12 1.3E-16 140.3 13.9 89 344-446 59-147 (571)
101 4glp_A Monocyte differentiatio 99.3 4.3E-12 1.5E-16 130.5 13.3 201 522-761 90-305 (310)
102 1xeu_A Internalin C; cellular 99.3 5.9E-13 2E-17 133.0 5.8 166 343-582 18-183 (263)
103 3m19_A Variable lymphocyte rec 99.3 1.4E-11 4.8E-16 122.3 15.5 98 344-444 35-136 (251)
104 1m9s_A Internalin B; cell inva 99.3 1.3E-12 4.4E-17 145.8 7.1 186 346-582 23-208 (605)
105 3goz_A Leucine-rich repeat-con 99.3 8.8E-14 3E-18 146.6 -2.5 94 335-431 13-124 (362)
106 1h6t_A Internalin B; cell adhe 99.3 4.4E-12 1.5E-16 128.8 10.0 160 350-582 30-189 (291)
107 2ell_A Acidic leucine-rich nuc 99.3 6E-12 2E-16 116.5 7.6 111 337-451 42-159 (168)
108 3goz_A Leucine-rich repeat-con 99.3 1E-12 3.5E-17 138.4 2.0 87 338-426 44-149 (362)
109 3e6j_A Variable lymphocyte rec 99.3 5.6E-11 1.9E-15 115.9 14.2 81 347-432 22-104 (229)
110 3cvr_A Invasion plasmid antige 99.2 8.5E-11 2.9E-15 129.6 17.1 184 524-765 60-245 (571)
111 2v9t_B SLIT homolog 2 protein 99.2 7.1E-11 2.4E-15 114.4 14.5 93 347-444 14-109 (220)
112 2o6s_A Variable lymphocyte rec 99.2 6.1E-11 2.1E-15 114.0 13.6 93 347-444 10-105 (208)
113 1xeu_A Internalin C; cellular 99.2 1.6E-11 5.3E-16 122.6 9.3 99 340-446 37-135 (263)
114 2je0_A Acidic leucine-rich nuc 99.2 5.4E-12 1.9E-16 114.1 5.2 105 338-446 36-147 (149)
115 2v70_A SLIT-2, SLIT homolog 2 99.2 7.7E-11 2.6E-15 114.1 13.6 93 347-444 14-110 (220)
116 4ezg_A Putative uncharacterize 99.2 4.4E-11 1.5E-15 113.8 10.0 146 287-448 43-190 (197)
117 1dce_A Protein (RAB geranylger 99.2 1.2E-12 4.1E-17 145.2 -1.9 174 341-582 346-544 (567)
118 2xot_A Amphoterin-induced prot 99.2 3.2E-11 1.1E-15 126.8 8.3 170 347-582 21-200 (361)
119 1a9n_A U2A', U2A'; complex (nu 99.2 3E-11 1E-15 112.5 7.2 104 343-450 41-151 (176)
120 2o6s_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 108.6 12.8 158 548-751 28-190 (208)
121 3e6j_A Variable lymphocyte rec 99.1 7.7E-11 2.6E-15 115.0 7.8 106 338-446 58-166 (229)
122 4b8c_D Glucose-repressible alc 99.1 6.6E-11 2.3E-15 135.6 8.1 113 335-450 215-327 (727)
123 2je0_A Acidic leucine-rich nuc 99.1 4.4E-11 1.5E-15 108.0 5.0 105 341-449 14-123 (149)
124 2ell_A Acidic leucine-rich nuc 99.1 5.8E-11 2E-15 109.8 5.8 137 286-434 22-165 (168)
125 2v70_A SLIT-2, SLIT homolog 2 99.1 7.5E-11 2.6E-15 114.2 6.7 106 339-447 52-161 (220)
126 2v9t_B SLIT homolog 2 protein 99.1 1.3E-10 4.3E-15 112.6 6.7 107 338-447 50-160 (220)
127 1a9n_A U2A', U2A'; complex (nu 99.0 2E-10 6.8E-15 107.0 6.2 104 340-448 15-122 (176)
128 1dce_A Protein (RAB geranylger 99.0 3.5E-10 1.2E-14 125.4 7.8 102 345-451 442-545 (567)
129 2wfh_A SLIT homolog 2 protein 99.0 8.1E-10 2.8E-14 104.3 8.4 101 344-447 31-134 (193)
130 2wfh_A SLIT homolog 2 protein 99.0 3.2E-09 1.1E-13 100.2 12.3 81 347-432 13-94 (193)
131 2xot_A Amphoterin-induced prot 99.0 7.4E-10 2.5E-14 116.3 7.6 100 344-446 39-143 (361)
132 1w8a_A SLIT protein; signaling 98.9 1.7E-09 5.9E-14 102.0 8.2 100 345-446 30-133 (192)
133 4b8c_D Glucose-repressible alc 98.9 3.9E-10 1.3E-14 129.2 4.3 119 308-436 219-337 (727)
134 3sb4_A Hypothetical leucine ri 98.9 2.9E-09 9.8E-14 110.3 9.8 96 343-444 48-153 (329)
135 1w8a_A SLIT protein; signaling 98.9 4E-09 1.4E-13 99.5 9.2 95 347-446 11-109 (192)
136 2r9u_A Variable lymphocyte rec 98.9 2.6E-09 9E-14 98.8 7.7 81 344-426 33-116 (174)
137 1ds9_A Outer arm dynein; leuci 98.9 7.7E-11 2.6E-15 112.2 -3.0 104 338-446 42-147 (198)
138 1ds9_A Outer arm dynein; leuci 98.9 8.8E-11 3E-15 111.8 -2.8 126 308-445 43-180 (198)
139 3g39_A Variable lymphocyte rec 98.8 3.7E-09 1.3E-13 97.5 7.5 95 347-446 12-109 (170)
140 2r9u_A Variable lymphocyte rec 98.8 5E-09 1.7E-13 96.9 7.8 99 347-450 15-116 (174)
141 2o6r_A Variable lymphocyte rec 98.8 1.1E-08 3.8E-13 95.1 8.4 101 344-447 28-132 (177)
142 3sb4_A Hypothetical leucine ri 98.8 3.4E-08 1.2E-12 102.1 12.8 89 670-770 226-316 (329)
143 3g39_A Variable lymphocyte rec 98.7 1.5E-08 5.2E-13 93.3 7.8 86 344-432 30-118 (170)
144 2o6r_A Variable lymphocyte rec 98.7 1.1E-08 3.7E-13 95.2 6.8 88 337-426 45-135 (177)
145 2ifg_A High affinity nerve gro 98.4 2.4E-07 8.3E-12 96.6 7.3 85 340-426 27-114 (347)
146 2ifg_A High affinity nerve gro 98.4 3E-07 1E-11 95.9 6.9 99 348-449 12-113 (347)
147 4fs7_A Uncharacterized protein 98.4 1.1E-05 3.7E-10 85.5 18.8 59 339-400 66-126 (394)
148 4fdw_A Leucine rich hypothetic 98.3 1.6E-05 5.6E-10 83.8 18.3 93 345-444 136-231 (401)
149 4fdw_A Leucine rich hypothetic 98.3 4.1E-05 1.4E-09 80.7 20.9 237 341-640 110-355 (401)
150 1w5s_A Origin recognition comp 98.3 3.5E-06 1.2E-10 90.1 12.7 225 3-247 102-372 (412)
151 3e4g_A ATP synthase subunit S, 98.3 4E-07 1.4E-11 82.4 4.0 73 691-765 81-154 (176)
152 4fs7_A Uncharacterized protein 98.2 6.4E-05 2.2E-09 79.5 20.2 55 363-420 66-122 (394)
153 2qen_A Walker-type ATPase; unk 98.1 2.3E-05 7.9E-10 81.5 13.3 213 21-263 111-348 (350)
154 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 8.9E-11 77.0 4.3 87 630-742 61-155 (176)
155 2fna_A Conserved hypothetical 98.0 3E-05 1E-09 80.9 13.0 212 22-262 123-355 (357)
156 3un9_A NLR family member X1; l 98.0 2E-06 7E-11 89.8 2.5 97 328-426 110-222 (372)
157 3un9_A NLR family member X1; l 97.9 4.7E-06 1.6E-10 87.1 4.0 131 288-426 101-250 (372)
158 2ra8_A Uncharacterized protein 97.8 1.5E-05 5.3E-10 82.4 5.9 85 567-660 135-228 (362)
159 1io0_A Tropomodulin; LRR prote 97.7 1.9E-05 6.4E-10 73.5 4.1 90 336-426 28-134 (185)
160 2ra8_A Uncharacterized protein 97.7 6.3E-06 2.2E-10 85.3 0.3 35 521-559 170-204 (362)
161 3rw6_A Nuclear RNA export fact 97.6 6.2E-05 2.1E-09 73.6 6.7 83 337-421 163-257 (267)
162 1io0_A Tropomodulin; LRR prote 97.6 7.9E-05 2.7E-09 69.2 6.4 112 307-426 30-162 (185)
163 2qby_B CDC6 homolog 3, cell di 97.5 0.0064 2.2E-07 63.8 19.9 217 3-246 98-339 (384)
164 2v1u_A Cell division control p 97.4 0.0049 1.7E-07 64.7 17.6 224 3-246 94-351 (387)
165 3rw6_A Nuclear RNA export fact 97.3 0.00017 5.9E-09 70.4 5.3 80 365-446 167-258 (267)
166 4gt6_A Cell surface protein; l 97.2 0.004 1.4E-07 65.5 15.3 83 339-424 82-169 (394)
167 4h09_A Hypothetical leucine ri 97.2 0.02 6.8E-07 59.8 20.5 77 342-424 44-122 (379)
168 4gt6_A Cell surface protein; l 97.1 0.0087 3E-07 62.9 16.6 100 339-444 58-165 (394)
169 1njg_A DNA polymerase III subu 96.8 0.0016 5.4E-08 63.4 6.6 104 36-143 125-230 (250)
170 1fnn_A CDC6P, cell division co 96.7 0.031 1.1E-06 58.5 16.5 226 3-247 89-352 (389)
171 2qby_A CDC6 homolog 1, cell di 96.7 0.023 8E-07 59.4 15.4 223 5-246 94-348 (386)
172 1hqc_A RUVB; extended AAA-ATPa 96.1 0.008 2.8E-07 61.3 7.1 190 37-245 90-324 (324)
173 2chg_A Replication factor C sm 95.9 0.024 8.4E-07 53.8 9.3 117 21-141 80-204 (226)
174 4h09_A Hypothetical leucine ri 95.8 0.17 5.7E-06 52.7 15.6 104 306-423 39-143 (379)
175 1sxj_B Activator 1 37 kDa subu 95.1 0.061 2.1E-06 54.6 9.0 117 22-142 85-211 (323)
176 3rfe_A Platelet glycoprotein I 93.9 0.077 2.6E-06 45.3 5.6 51 348-401 12-65 (130)
177 3rfe_A Platelet glycoprotein I 93.7 0.071 2.4E-06 45.5 5.0 53 371-426 11-66 (130)
178 1pgv_A TMD-1, tropomodulin TMD 93.1 0.14 4.6E-06 47.1 6.0 91 334-425 31-136 (197)
179 1iqp_A RFCS; clamp loader, ext 90.7 0.43 1.5E-05 48.2 7.4 99 36-141 109-212 (327)
180 1pgv_A TMD-1, tropomodulin TMD 88.9 0.59 2E-05 42.8 5.9 114 310-426 38-168 (197)
181 2chq_A Replication factor C sm 87.6 2.3 8E-05 42.4 10.2 100 36-139 101-202 (319)
182 1jr3_A DNA polymerase III subu 86.8 1.2 4.1E-05 45.9 7.6 102 36-141 118-221 (373)
183 3bos_A Putative DNA replicatio 83.7 0.84 2.9E-05 43.5 4.3 99 38-140 105-216 (242)
184 2z4s_A Chromosomal replication 83.3 2.6 8.8E-05 44.5 8.2 101 33-137 190-302 (440)
185 1a5t_A Delta prime, HOLB; zinc 81.8 4.9 0.00017 40.5 9.4 96 36-140 107-204 (334)
186 1sxj_E Activator 1 40 kDa subu 78.4 3.4 0.00012 42.0 7.0 101 37-140 134-236 (354)
187 1d2n_A N-ethylmaleimide-sensit 74.6 20 0.00068 34.6 11.1 116 33-158 120-259 (272)
188 3pfi_A Holliday junction ATP-d 67.7 44 0.0015 33.3 12.2 98 36-139 105-225 (338)
189 1sxj_D Activator 1 41 kDa subu 66.0 17 0.00057 36.6 8.7 100 37-140 133-234 (353)
190 3te6_A Regulatory protein SIR3 60.9 30 0.001 34.2 9.0 138 3-144 96-283 (318)
191 3h4m_A Proteasome-activating n 57.9 43 0.0015 32.3 9.7 98 35-137 108-227 (285)
192 1g5t_A COB(I)alamin adenosyltr 55.2 6.9 0.00024 35.5 2.9 54 25-78 107-164 (196)
193 1jr3_D DNA polymerase III, del 52.9 46 0.0016 33.2 9.2 115 21-139 59-183 (343)
194 2qz4_A Paraplegin; AAA+, SPG7, 52.4 49 0.0017 31.3 8.9 98 35-135 96-215 (262)
195 1sxj_A Activator 1 95 kDa subu 51.8 15 0.0005 39.6 5.4 100 36-141 147-253 (516)
196 1l8q_A Chromosomal replication 51.3 7.1 0.00024 39.0 2.7 91 38-134 99-201 (324)
197 2qp9_X Vacuolar protein sortin 45.4 1.4E+02 0.0048 29.9 11.3 108 27-140 132-260 (355)
198 2gno_A DNA polymerase III, gam 43.1 20 0.00068 35.4 4.4 85 21-107 62-152 (305)
199 3eie_A Vacuolar protein sortin 41.1 1.2E+02 0.0041 29.8 10.0 110 26-141 98-228 (322)
200 3u61_B DNA polymerase accessor 40.2 64 0.0022 31.8 7.8 107 23-135 86-210 (324)
201 3uk6_A RUVB-like 2; hexameric 37.3 66 0.0023 32.3 7.5 91 39-137 191-299 (368)
202 3syl_A Protein CBBX; photosynt 35.3 28 0.00097 34.1 4.2 70 37-108 130-218 (309)
203 1jbk_A CLPB protein; beta barr 30.3 36 0.0012 30.0 3.7 67 35-103 113-194 (195)
204 1xwi_A SKD1 protein; VPS4B, AA 28.6 4.2E+02 0.014 25.8 11.9 112 24-141 91-223 (322)
205 1sxj_C Activator 1 40 kDa subu 28.4 1.2E+02 0.0041 30.1 7.5 97 37-137 110-208 (340)
206 2gkw_B Tumor necrosis factor r 26.8 42 0.0014 18.3 1.8 18 60-77 3-20 (26)
207 3d8b_A Fidgetin-like protein 1 25.7 2.2E+02 0.0074 28.4 8.9 69 67-141 221-295 (357)
208 3pvs_A Replication-associated 25.2 2.2E+02 0.0075 29.6 9.0 98 35-137 104-211 (447)
209 2zan_A Vacuolar protein sortin 20.0 3.5E+02 0.012 27.9 9.4 103 35-141 225-345 (444)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.98 E-value=3.1e-32 Score=303.01 Aligned_cols=250 Identities=16% Similarity=0.222 Sum_probs=194.3
Q ss_pred hhHHHHHHHhhcCCCC------CCCCCHHHHHHHHHHHhCCC-eEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEe
Q 048758 2 FRISKSILNSVAKDQS------NNDDDLNSLQVKLKERLSGK-KFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTH 74 (777)
Q Consensus 2 ~~l~~~il~~l~~~~~------~~~~~~~~~~~~l~~~L~~~-~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTT 74 (777)
.+++++|+..+..... .+..+.+..+..+++.|+++ ||||||||||+.....|.. .+||+|||||
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTT 272 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTT 272 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEE
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEc
Confidence 4688899999876521 12234567789999999996 9999999999964333332 2799999999
Q ss_pred ecHHHHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHH
Q 048758 75 RNQDVAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDW 153 (777)
Q Consensus 75 R~~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w 153 (777)
|++.++..++ ....|+|++|+.+|||+||..+||... ..+.+.+++.+|+++|+|+||||+++|+.++.+ .. .|
T Consensus 273 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~ 347 (549)
T 2a5y_B 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EK 347 (549)
T ss_dssp SBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HH
T ss_pred CCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HH
Confidence 9999998876 346799999999999999999998643 246788899999999999999999999999876 32 23
Q ss_pred HHHHhccccccccCccCchhhHhhcccCCChhhHHHHh-----------HhcCCCCCceeCHHHHHHHHHHC--CCccCc
Q 048758 154 EFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFA-----------YCSLFPKDYEFEEEEIILLWTAE--GFLDQE 220 (777)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl-----------~~~~f~~~~~i~~~~l~~~w~~~--g~i~~~ 220 (777)
...+....+.. ....+..++.+||+.||+..|.||+ |||+||+++.|+ ++.|+++ |++...
T Consensus 348 ~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~ 421 (549)
T 2a5y_B 348 MAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSN 421 (549)
T ss_dssp HHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-----
T ss_pred HHHhHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccC
Confidence 23333222111 3456889999999999999999999 999999999999 7899999 999876
Q ss_pred CCCCcHHHHHHHHHHHHhhCcccccccC-CCCcEEecHHHHHHHHHhhccce
Q 048758 221 YSGRKMEDLGREFVQELHSRSLFQLSSK-DTSRFVMHDLINDLARWAAGEQY 271 (777)
Q Consensus 221 ~~~~~~~d~~~~~l~~L~~~sLl~~~~~-~~~~~~mhd~i~~~~~~~~~~~~ 271 (777)
......++.+. ++++|+++||++.... ...+|.|||++|++|+.++..+.
T Consensus 422 ~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 422 EEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp --CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred CCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 54566777777 9999999999997653 34679999999999998876643
No 2
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=3.5e-30 Score=293.44 Aligned_cols=434 Identities=18% Similarity=0.118 Sum_probs=252.5
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCcccc-Cccc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNL-PNEI 364 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i 364 (777)
.+..++.+.+..+...... ...+.++++|+.|.+ +.+.+. ...+..|.++++|++|+|++| .+..+ |..|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L------s~n~l~-~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDL------SRCEIE-TIEDKAWHGLHHLSNLILTGN-PIQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEEC------TTCCCC-EECTTTTTTCTTCCEEECTTC-CCCCCCTTSS
T ss_pred CCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeC------CCCccc-ccCHHHhhchhhcCEeECCCC-cccccChhhc
Confidence 4567888877776543322 235678888888844 333332 233455788999999999988 56665 7888
Q ss_pred cCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCcc--ccchhccccCcccEEecCCccccccc-CcccccccC
Q 048758 365 GNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLK--KLCKDMGNLTKLRHLKNSNVHSLEEM-PKGFGKLTS 440 (777)
Q Consensus 365 ~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~-p~~~~~l~~ 440 (777)
+++++|++|++++|.+..+| ..++++++|++|++++| .+. .+|..++++++|++|++++|. +..+ |..++.+.+
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRE 178 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHH
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhc
Confidence 99999999999999998776 67889999999999998 554 578889999999999999988 4444 445666666
Q ss_pred Ccc----cCcEEecCCC--CCCccccccccccCCcEEEccc---------------------------c-----------
Q 048758 441 LLT----LGRFVVGKDS--GSGLRQLKSLAHLQGRLKISKL---------------------------E----------- 476 (777)
Q Consensus 441 L~~----L~~~~~~~~~--~~~~~~l~~L~~L~~~l~i~~l---------------------------~----------- 476 (777)
|+. |++..+.... ...+... +++ .+.+... .
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~----~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~ 253 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGI-KLH----ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEE----EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGG
T ss_pred cccccceeeccCCCcceeCcccccCc-eee----eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChH
Confidence 552 3221111110 0000000 111 1111110 0
Q ss_pred ----------------ccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCc
Q 048758 477 ----------------NVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPI 540 (777)
Q Consensus 477 ----------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 540 (777)
.........+. +..+++|+.+++..+... ....+..+++|+.|++.+|.+..+|.
T Consensus 254 ~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~--------~l~~l~~~~~L~~L~l~~n~l~~lp~ 324 (606)
T 3vq2_A 254 IMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK--------YLEDVPKHFKWQSLSIIRCQLKQFPT 324 (606)
T ss_dssp GGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC--------CCCCCCTTCCCSEEEEESCCCSSCCC
T ss_pred HhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch--------hhhhccccccCCEEEcccccCccccc
Confidence 00111111111 344455555555533211 11244455566666666666655553
Q ss_pred ccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCCCceEe--CcccccCCCCCCCCCCceeeccCccchhhhh
Q 048758 541 WLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMDGVKIV--GLEFYGNICSVPFPSLEALSFSDMTEWEEWI 618 (777)
Q Consensus 541 ~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 618 (777)
+ .+++|+.|++++|.....+ .++.+++|++|++++|...... +..+.. +++|+.|+++++.- ..+
T Consensus 325 ~----~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~------~~~L~~L~L~~n~l-~~~- 391 (606)
T 3vq2_A 325 L----DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLG------TNSLRHLDLSFNGA-IIM- 391 (606)
T ss_dssp C----CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHC------CSCCCEEECCSCSE-EEE-
T ss_pred C----CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhcc------CCcccEeECCCCcc-ccc-
Confidence 3 3566666666666443333 4445666666666665322111 222212 56666666666541 111
Q ss_pred ccccCCCCCCCCCccEEEEecCCCc---c-cccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCcccccccc
Q 048758 619 PCGAGTLPRRLLLLETLDITSCDQL---L-VTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSETR 689 (777)
Q Consensus 619 ~~~~~~~~~~l~~L~~L~l~~c~~l---~-~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~~ 689 (777)
......+++|+.|++++|... + ..+..+++|++|++++|.... +..++.|+.|++.+|.........
T Consensus 392 ----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 392 ----SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp ----CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ----hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 112234667777777777421 2 356677777777777776433 344577777777777554434455
Q ss_pred CCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCccccCC
Q 048758 690 LPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVSFPEV 769 (777)
Q Consensus 690 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~ 769 (777)
.+..+++|++|++++| .+..++... +..+ ++|++|++++|+.....|..+..+++|++|++++|. ++.+|..
T Consensus 468 ~~~~l~~L~~L~Ls~n-~l~~~~~~~-----~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~ 539 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKC-QLEQISWGV-----FDTL-HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGI 539 (606)
T ss_dssp CCTTCTTCCEEECTTS-CCCEECTTT-----TTTC-TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESC
T ss_pred hhccCCCCCEEECCCC-cCCccChhh-----hccc-ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHh
Confidence 6667777888888776 444442211 1223 677778887764333446677777777788777764 6677764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2.3e-30 Score=301.46 Aligned_cols=443 Identities=19% Similarity=0.168 Sum_probs=284.2
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCcccc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIG 365 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~ 365 (777)
....++.+.+..+..... .+.+..+++|+.|. ++.+.+. ...+..+.++++|++|++++|.....+|..
T Consensus 198 ~l~~L~~L~Ls~n~l~~~--~~~l~~l~~L~~L~------Ls~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-- 266 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTG--IPFLGDCSALQHLD------ISGNKLS-GDFSRAISTCTELKLLNISSNQFVGPIPPL-- 266 (768)
T ss_dssp TCTTCCEEECCSSCCCSC--CCBCTTCCSCCEEE------CCSSCCC-SCHHHHTTTCSSCCEEECCSSCCEESCCCC--
T ss_pred cCCcCCEEECcCCcCCCC--CcccccCCCCCEEE------CcCCcCC-CcccHHHhcCCCCCEEECCCCcccCccCcc--
Confidence 456677777776655442 22366788888884 3334432 234556888888999999888433345543
Q ss_pred CcCccCeeeccCCccc-ccchhhhcc-ccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcc-cccccCCc
Q 048758 366 NLKHLRCLNLSRTRIQ-ILPESINSL-YNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKG-FGKLTSLL 442 (777)
Q Consensus 366 ~l~~L~~L~L~~~~i~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~-~~~l~~L~ 442 (777)
.+++|++|++++|.++ .+|..+..+ ++|++|++++|.....+|..++++++|++|++++|.....+|.. ++.+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 7888888888888887 777777664 88888888888444567777888888888888888744477765 77888888
Q ss_pred ccCcEEecCC--CCCCccccc-cccccCCcEEEccccccCCcccchhhccCc--ccccccceEeeccCCCccchHHHhcc
Q 048758 443 TLGRFVVGKD--SGSGLRQLK-SLAHLQGRLKISKLENVKDVGDASEAQLNN--KVNLEALILEWSARSERCEFETQVLS 517 (777)
Q Consensus 443 ~L~~~~~~~~--~~~~~~~l~-~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~ 517 (777)
+|++..+... .+..+..+. +++ .+.+... ......+..+.. +++|+.|.++.+. .....+.
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~----~L~Ls~N----~l~~~~~~~~~~~~~~~L~~L~L~~n~------l~~~~p~ 412 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLL----TLDLSSN----NFSGPILPNLCQNPKNTLQELYLQNNG------FTGKIPP 412 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCS----EEECCSS----EEEEECCTTTTCSTTCCCCEEECCSSE------EEEECCG
T ss_pred EEeCcCCccCccccHHHHhhhcCCc----EEEccCC----CcCCCcChhhhhcccCCccEEECCCCc------cccccCH
Confidence 7766444321 122222222 222 2222211 111112222222 5567777776442 2222344
Q ss_pred cCCCCCCCCeEEEeecCCC-CCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeecCCCCceEeCcccccCC
Q 048758 518 MLKPHRDVQELTITGYSGT-KFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLISGMDGVKIVGLEFYGNI 595 (777)
Q Consensus 518 ~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 595 (777)
.+..+++|+.|++++|.+. .+|..+. .+++|+.|++++|.....+| .++.+++|++|++++|.....++..+..
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-- 488 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLG--SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-- 488 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG--
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHh--cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc--
Confidence 5566677777777777664 4555555 46777777777776655555 5667777777777776544444444333
Q ss_pred CCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC---CcccccCCCCCccEEEEcCCCCcc-------
Q 048758 596 CSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD---QLLVTIQCLPALSELQIDGCKRVV------- 665 (777)
Q Consensus 596 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~l~~~~~l~------- 665 (777)
+++|+.|+++++.-... .+. ....+++|++|++++|. .+|..+..+++|++|++++|+...
T Consensus 489 ----l~~L~~L~L~~N~l~~~-~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 489 ----CTNLNWISLSNNRLTGE-IPK----WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp ----CTTCCEEECCSSCCCSC-CCG----GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred ----CCCCCEEEccCCccCCc-CCh----HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 67777777777642111 110 01235677777777775 335666777777777777764210
Q ss_pred --------------------------------------------------------------------cCCCCCccEEEE
Q 048758 666 --------------------------------------------------------------------FSSPHLVHAVNV 677 (777)
Q Consensus 666 --------------------------------------------------------------------~~~~~~L~~L~l 677 (777)
+..++.|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 122356888899
Q ss_pred eecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEe
Q 048758 678 REQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRI 757 (777)
Q Consensus 678 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 757 (777)
++|......| ..+.++++|++|+++++.--..+|.... .+ ++|++|++++|...+.+|..+..+++|++|++
T Consensus 640 s~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~------~L-~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~l 711 (768)
T 3rgz_A 640 SYNMLSGYIP-KEIGSMPYLFILNLGHNDISGSIPDEVG------DL-RGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711 (768)
T ss_dssp CSSCCBSCCC-GGGGGCTTCCEEECCSSCCCSCCCGGGG------GC-TTCCEEECCSSCCEECCCGGGGGCCCCSEEEC
T ss_pred cCCcccccCC-HHHhccccCCEEeCcCCccCCCCChHHh------CC-CCCCEEECCCCcccCcCChHHhCCCCCCEEEC
Confidence 8876544443 4567889999999999754447776653 33 78999999997655689999999999999999
Q ss_pred cCCCCCccccCCCCCCC
Q 048758 758 YGCTSLVSFPEVALPSQ 774 (777)
Q Consensus 758 ~~c~~l~~lp~~~~p~~ 774 (777)
++|+.-+.||..+.+.+
T Consensus 712 s~N~l~g~iP~~~~~~~ 728 (768)
T 3rgz_A 712 SNNNLSGPIPEMGQFET 728 (768)
T ss_dssp CSSEEEEECCSSSSGGG
T ss_pred cCCcccccCCCchhhcc
Confidence 99988888998764443
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=3.9e-30 Score=299.64 Aligned_cols=394 Identities=17% Similarity=0.103 Sum_probs=235.3
Q ss_pred ccCCceeEEeecCccCccccCccccCcCccCeeeccCCccc-ccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 341 NHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
..+++|++|++++|.....+|. ++++++|++|++++|.++ .+|..++++++|++|++++|.....+|.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 4556666666666532222333 666666666666666655 44555666666666666666332333321 5555555
Q ss_pred EecCCcccccccCcccccc-cCCcccCcEEecCC--CCCCcccccccc----------------------ccCCcEEEcc
Q 048758 420 LKNSNVHSLEEMPKGFGKL-TSLLTLGRFVVGKD--SGSGLRQLKSLA----------------------HLQGRLKISK 474 (777)
Q Consensus 420 L~l~~~~~~~~~p~~~~~l-~~L~~L~~~~~~~~--~~~~~~~l~~L~----------------------~L~~~l~i~~ 474 (777)
|++++|.....+|..+..+ ++|++|++..+... .+..+..+.+|+ .|+ .+.+..
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~-~L~Ls~ 352 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK-VLDLSF 352 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC-EEECCS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC-EEeCcC
Confidence 5555555333455444443 55555543322211 111222222222 111 111111
Q ss_pred ccccCCcccchhhccCccc-ccccceEeeccCCCccchHHHhcccCCC--CCCCCeEEEeecCCC-CCCcccCCCCCCCe
Q 048758 475 LENVKDVGDASEAQLNNKV-NLEALILEWSARSERCEFETQVLSMLKP--HRDVQELTITGYSGT-KFPIWLGDSSFSKL 550 (777)
Q Consensus 475 l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L 550 (777)
. ......+..+..++ +|+.|+++.+. .....+..+.. +++|+.|++.+|.+. .+|.++. .+++|
T Consensus 353 n----~l~~~~p~~l~~l~~~L~~L~Ls~N~------l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~--~l~~L 420 (768)
T 3rgz_A 353 N----EFSGELPESLTNLSASLLTLDLSSNN------FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS--NCSEL 420 (768)
T ss_dssp S----EEEECCCTTHHHHTTTCSEEECCSSE------EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG--GCTTC
T ss_pred C----ccCccccHHHHhhhcCCcEEEccCCC------cCCCcChhhhhcccCCccEEECCCCccccccCHHHh--cCCCC
Confidence 0 01111222223333 45555544321 11112223333 567888888887764 5666665 57888
Q ss_pred eEEEEeCCCCCCCCC-CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCC
Q 048758 551 VQLKLEGCGKCTSLP-SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRL 629 (777)
Q Consensus 551 ~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l 629 (777)
+.|++++|.....+| .++.+++|++|++++|.....++..+.. +++|+.|+++++.-... .+ .....+
T Consensus 421 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~N~l~~~-~p----~~l~~l 489 (768)
T 3rgz_A 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY------VKTLETLILDFNDLTGE-IP----SGLSNC 489 (768)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG------CTTCCEEECCSSCCCSC-CC----GGGGGC
T ss_pred CEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC------CCCceEEEecCCcccCc-CC----HHHhcC
Confidence 888888887655566 6778888888888887655455544433 78899999988752211 11 111357
Q ss_pred CCccEEEEecCC---CcccccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCccccccc-------------
Q 048758 630 LLLETLDITSCD---QLLVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSET------------- 688 (777)
Q Consensus 630 ~~L~~L~l~~c~---~l~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~------------- 688 (777)
++|++|++++|. .+|.++..+++|++|++++|.... +..++.|+.|++++|......|.
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~ 569 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANF 569 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCST
T ss_pred CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhc
Confidence 889999999996 457788899999999999997542 45578899999998865422221
Q ss_pred --------------------------------------------------------cCCCCCCCCCeEEccCCCCCcccc
Q 048758 689 --------------------------------------------------------RLPQDIRSLNRLQISRCPQLLSLV 712 (777)
Q Consensus 689 --------------------------------------------------------~~~~~l~~L~~L~l~~c~~l~~l~ 712 (777)
..+..+++|++|+++++.--..+|
T Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip 649 (768)
T 3rgz_A 570 IAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649 (768)
T ss_dssp TCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC
T ss_pred cccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC
Confidence 123456789999999974444666
Q ss_pred ccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCccccC
Q 048758 713 TEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVSFPE 768 (777)
Q Consensus 713 ~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 768 (777)
.... .+ +.|++|++++|..-+.+|..++.+++|+.|++++|..-+.+|.
T Consensus 650 ~~l~------~l-~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 650 KEIG------SM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp GGGG------GC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred HHHh------cc-ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 6553 33 7899999999766668999999999999999999877767775
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.2e-28 Score=280.88 Aligned_cols=415 Identities=19% Similarity=0.175 Sum_probs=289.1
Q ss_pred CCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCcccc-CccccCcCccCeeeccCCccccc-chhhhcc
Q 048758 313 QHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQIL-PESINSL 390 (777)
Q Consensus 313 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L 390 (777)
+.++.+. ++.+.+. ...+..|.++++|++|++++| .+..+ |..|+++++|++|++++|.++.+ |..++++
T Consensus 32 ~~l~~L~------Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNID------LSFNPLK-ILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TTCCEEE------CTTSCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCcCEEE------CCCCCcC-EeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 5677773 3334332 233445889999999999999 66665 67799999999999999999977 7889999
Q ss_pred ccCcEEeeCCCcCccccc-hhccccCcccEEecCCccccc-ccCcccccccCCcccCcEEecCCC--CCCcccccccccc
Q 048758 391 YNLHTILLEDCWKLKKLC-KDMGNLTKLRHLKNSNVHSLE-EMPKGFGKLTSLLTLGRFVVGKDS--GSGLRQLKSLAHL 466 (777)
Q Consensus 391 ~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L 466 (777)
++|++|++++| .+..+| ..++++++|++|++++|.... .+|..++++++|++|++..+.... ...+..+.+++..
T Consensus 104 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~ 182 (606)
T 3vq2_A 104 TSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182 (606)
T ss_dssp TTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred ccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence 99999999999 666665 669999999999999998332 578899999999999776553322 2233344443321
Q ss_pred CCcEEEccccccCCcccchhhccCcccccccceEeeccCC----------------------------------------
Q 048758 467 QGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARS---------------------------------------- 506 (777)
Q Consensus 467 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---------------------------------------- 506 (777)
...+.+..- .........+.. .+|+.|+++.+...
T Consensus 183 l~~L~l~~n----~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 183 NLSLDMSLN----PIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp CCEEECTTC----CCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred cceeeccCC----CcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence 112222211 111111111111 14444444433210
Q ss_pred ------------CccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcc
Q 048758 507 ------------ERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLK 574 (777)
Q Consensus 507 ------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~ 574 (777)
...... .....+..+++|+.|++.++.+..+| ++. .+++|+.|++.+|.. +.+|.+ .+++|+
T Consensus 258 l~~l~l~~l~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~l-~~lp~~-~l~~L~ 331 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFS-DDIVKFHCLANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQL-KQFPTL-DLPFLK 331 (606)
T ss_dssp GGGSEEEEEEECCCTTCC-GGGGSCGGGTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCCC-SSCCCC-CCSSCC
T ss_pred hhhccHhheecccccccc-ccccccccCCCCCEEEecCccchhhh-hcc--ccccCCEEEcccccC-cccccC-CCCccc
Confidence 000111 11222666789999999999998888 444 589999999999987 888877 899999
Q ss_pred eeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--CcccccCCCCC
Q 048758 575 ELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QLLVTIQCLPA 652 (777)
Q Consensus 575 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~l~~ 652 (777)
+|++++|..+.... +. .+++|+.|+++++.-- .... .......+++|++|++++|. .++..+..+++
T Consensus 332 ~L~l~~n~~~~~~~--~~------~l~~L~~L~ls~n~l~-~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 332 SLTLTMNKGSISFK--KV------ALPSLSYLDLSRNALS-FSGC--CSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEE 400 (606)
T ss_dssp EEEEESCSSCEECC--CC------CCTTCCEEECCSSCEE-EEEE--CCHHHHCCSCCCEEECCSCSEEEECCCCTTCTT
T ss_pred eeeccCCcCccchh--hc------cCCCCCEEECcCCccC-CCcc--hhhhhccCCcccEeECCCCccccchhhccCCCC
Confidence 99999996665442 21 3899999999987421 1000 00011357899999999996 34667889999
Q ss_pred ccEEEEcCCCCcc------cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcc--ccccccccCCCCCc
Q 048758 653 LSELQIDGCKRVV------FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLS--LVTEEEHDQQQPEL 724 (777)
Q Consensus 653 L~~L~l~~~~~l~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~~~~l 724 (777)
|++|++++|.... +..++.|+.|++++|.... .....+..+++|++|++++|. +.. +|... ..+
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~------~~l 472 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVF------ANT 472 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCE-EGGGEECSCC------TTC
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCc-cchhhhcCCCCCCEEECCCCc-CCCcchHHhh------ccC
Confidence 9999999997433 4457899999999987543 444567889999999999974 443 34333 333
Q ss_pred CCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCcccc
Q 048758 725 PCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVSFP 767 (777)
Q Consensus 725 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 767 (777)
++|++|++++|......|..+..+++|++|++++|..-...|
T Consensus 473 -~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 473 -TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp -TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred -CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 799999999974444456778999999999999985443334
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=280.91 Aligned_cols=451 Identities=15% Similarity=0.121 Sum_probs=238.1
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-cCccc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEI 364 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i 364 (777)
.+..++.+.+..+..... ....+..+++|+.|.+.. +.......+..|.++++|++|+|++| .+.. .|..|
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~------n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGS------QYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECT------TCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCC------CCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHc
Confidence 677889998888765432 234567888888884433 32223334566899999999999998 5555 58889
Q ss_pred cCcCccCeeeccCCcccc-cchh--hhccccCcEEeeCCCcCcccc--chhccccCcccEEecCCcccccccCcccccc-
Q 048758 365 GNLKHLRCLNLSRTRIQI-LPES--INSLYNLHTILLEDCWKLKKL--CKDMGNLTKLRHLKNSNVHSLEEMPKGFGKL- 438 (777)
Q Consensus 365 ~~l~~L~~L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l--p~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l- 438 (777)
+++++|++|+|++|.+.. +|.. ++++++|++|++++| .+..+ +..++++++|++|++++|......|..++.+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 999999999999999884 5555 889999999999999 55544 2468999999999999988444456667666
Q ss_pred -cCCcccCcEEecCCC--CCCcccccc-cc--ccCCcEEEccccccCC--------------------------------
Q 048758 439 -TSLLTLGRFVVGKDS--GSGLRQLKS-LA--HLQGRLKISKLENVKD-------------------------------- 480 (777)
Q Consensus 439 -~~L~~L~~~~~~~~~--~~~~~~l~~-L~--~L~~~l~i~~l~~~~~-------------------------------- 480 (777)
++|+.|.+..+.... ...+..+.+ +. .|. .+.+........
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 677777655443222 111111111 00 111 122211100000
Q ss_pred cccchhhccCc--ccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCc-ccCCCCCCCeeEEEEeC
Q 048758 481 VGDASEAQLNN--KVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPI-WLGDSSFSKLVQLKLEG 557 (777)
Q Consensus 481 ~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~ 557 (777)
........+.. .++|+.|+++.+. ........+..+++|+.|++++|.+..++. .+. .+++|+.|+|++
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGF------VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSY 323 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCC------CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCEEEEES
T ss_pred cCCCChhhhhccccCCccEEECCCCc------ccccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCEEECCC
Confidence 00011111111 1456666665432 111123445566777777777777655433 333 467777777777
Q ss_pred CCCCCCCC-CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEE
Q 048758 558 CGKCTSLP-SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLD 636 (777)
Q Consensus 558 ~~~~~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~ 636 (777)
|......+ .++.+++|++|++++|. +..++...+. .+++|+.|+++++.- . .++ .+++|+.|+
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~-----~l~~L~~L~Ls~N~l-~--------~i~-~~~~L~~L~ 387 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFK-----FLEKLQTLDLRDNAL-T--------TIH-FIPSIPDIF 387 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSC-----SCCCCCEEEEETCCS-C--------CCS-SCCSCSEEE
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhc-----CCCCCCEEECCCCCC-C--------ccc-CCCCcchhc
Confidence 76443333 56677777777777764 3333222111 267777777776531 1 111 145566666
Q ss_pred EecCCCcccccCCCCCccEEEEcCCCCcc------cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcc
Q 048758 637 ITSCDQLLVTIQCLPALSELQIDGCKRVV------FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLS 710 (777)
Q Consensus 637 l~~c~~l~~~~~~l~~L~~L~l~~~~~l~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 710 (777)
+++|.-- .......+++.|++++|..-. +..++.|+.|++++|..........+..+++|++|+++++ .+..
T Consensus 388 l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~ 465 (844)
T 3j0a_A 388 LSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN-MLQL 465 (844)
T ss_dssp EESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC-CCSS
T ss_pred cCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC-cccc
Confidence 6655311 111112334444444443211 1134455555555544332222223333455555555553 2322
Q ss_pred ccccccccCCCCCcCCcccEEeeecCCCCCCch-hhcCCCCCccEEEecCCCCCccccCCCCCCCC
Q 048758 711 LVTEEEHDQQQPELPCRLQFLELRNCEGLTRLP-QALLTLSSLTEMRIYGCTSLVSFPEVALPSQL 775 (777)
Q Consensus 711 l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~~p~~l 775 (777)
++........+..+ ++|++|++++| .++.+| ..+..+++|++|++++| .++.+|...++++|
T Consensus 466 ~~~~~~~~~~~~~l-~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L 528 (844)
T 3j0a_A 466 AWETELCWDVFEGL-SHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANL 528 (844)
T ss_dssp SCCSCCCSSCSSCB-CCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCC
T ss_pred ccccccchhhhcCc-ccccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhhccc
Confidence 22111000111122 34455555543 333322 22344455555555443 34444444444433
No 7
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=9.3e-28 Score=271.61 Aligned_cols=437 Identities=19% Similarity=0.175 Sum_probs=281.6
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccC-ccc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLP-NEI 364 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i 364 (777)
.+..++.+.+..+...... ...+..+++|+.|.+.+ +.+. ...+..|.++++|++|+|++| .+..+| ..|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~------n~i~-~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSR------CEIQ-TIEDGAYQSLSHLSTLILTGN-PIQSLALGAF 96 (570)
T ss_dssp SCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTT------CCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred ccccccEEEccCCccCccC-hhHhhCCCCceEEECCC------CcCC-ccCcccccCchhCCEEeCcCC-cCCccCHhhh
Confidence 4567888887776544322 23567888999884433 3322 233456888999999999998 566654 678
Q ss_pred cCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccc--cchhccccCcccEEecCCccccccc-CcccccccC
Q 048758 365 GNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKK--LCKDMGNLTKLRHLKNSNVHSLEEM-PKGFGKLTS 440 (777)
Q Consensus 365 ~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~-p~~~~~l~~ 440 (777)
+++++|++|++++|.++.+|. .++++++|++|++++| .+.. +|..++++++|++|++++|. +..+ |..++.+++
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~ 174 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 174 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHT
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhc
Confidence 999999999999999998876 6889999999999999 5553 68889999999999999998 5444 455777777
Q ss_pred C----cccCcEEecCCC--CCCcccccccccc----------------------CC-cEEEcccc---------------
Q 048758 441 L----LTLGRFVVGKDS--GSGLRQLKSLAHL----------------------QG-RLKISKLE--------------- 476 (777)
Q Consensus 441 L----~~L~~~~~~~~~--~~~~~~l~~L~~L----------------------~~-~l~i~~l~--------------- 476 (777)
| ..|++..+.... ...+... .++.+ .. .+.+....
T Consensus 175 L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 175 MPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred cchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 7 333222111110 0011100 11111 00 00000000
Q ss_pred ------------ccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCC
Q 048758 477 ------------NVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGD 544 (777)
Q Consensus 477 ------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 544 (777)
.........+..+..+++|+.|++..+... .....+..+ +|+.|++.+|.+..+|..
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-------~l~~~~~~~-~L~~L~l~~n~~~~l~~~--- 322 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-------RVKDFSYNF-GWQHLELVNCKFGQFPTL--- 322 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-------SCCBCCSCC-CCSEEEEESCBCSSCCBC---
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-------hhhhhhccC-CccEEeeccCcccccCcc---
Confidence 000111223344555667777777644211 123334445 778888887777766652
Q ss_pred CCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCCCceEe--CcccccCCCCCCCCCCceeeccCccchhhhhcccc
Q 048758 545 SSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMDGVKIV--GLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGA 622 (777)
Q Consensus 545 ~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 622 (777)
.+++|+.|++.+|.....++. ..+++|++|++++|...... +..+.+ +++|+.|+++++.-. .+.+
T Consensus 323 -~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~------~~~L~~L~l~~n~l~-~~~~--- 390 (570)
T 2z63_A 323 -KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFG------TTSLKYLDLSFNGVI-TMSS--- 390 (570)
T ss_dssp -BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHT------CSCCCEEECCSCSEE-EEEE---
T ss_pred -cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccc------cCccCEEECCCCccc-cccc---
Confidence 477788888888765544444 67888888888877533222 222222 788888888887421 1111
Q ss_pred CCCCCCCCCccEEEEecCCC--c-c-cccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCccccccccCCCC
Q 048758 623 GTLPRRLLLLETLDITSCDQ--L-L-VTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSETRLPQD 693 (777)
Q Consensus 623 ~~~~~~l~~L~~L~l~~c~~--l-~-~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 693 (777)
. ...+++|++|++++|.. . + ..+..+++|++|++++|.... +..++.|+.|++.+|.......+..+..
T Consensus 391 -~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 391 -N-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp -E-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred -c-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 1 23578899999998852 2 2 357788999999999987443 4557889999999887553334466788
Q ss_pred CCCCCeEEccCCCCCccc-cccccccCCCCCcCCcccEEeeecCCCCCCch-hhcCCCCCccEEEecCCCCCccccC
Q 048758 694 IRSLNRLQISRCPQLLSL-VTEEEHDQQQPELPCRLQFLELRNCEGLTRLP-QALLTLSSLTEMRIYGCTSLVSFPE 768 (777)
Q Consensus 694 l~~L~~L~l~~c~~l~~l-~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~ 768 (777)
+++|++|++++| .+..+ |... ..+ ++|++|++++| .++.+| ..+..+++|++|++++|+.-...|.
T Consensus 469 l~~L~~L~l~~n-~l~~~~~~~~------~~l-~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 469 LRNLTFLDLSQC-QLEQLSPTAF------NSL-SSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECTTS-CCCEECTTTT------TTC-TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCCEEECCCC-ccccCChhhh------hcc-cCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 899999999997 45554 3322 333 78999999996 566554 5578899999999998876655554
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.1e-27 Score=273.00 Aligned_cols=434 Identities=15% Similarity=0.103 Sum_probs=229.1
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-cCccc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEI 364 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i 364 (777)
.+..++.+.+..+...... ...+..+++|+.|.+ +.+.+. ...+..|.++++|++|+|++| .+.. .|..+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L------s~n~i~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 101 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDL------TRCQIY-WIHEDTFQSQHRLDTLVLTAN-PLIFMAETAL 101 (606)
T ss_dssp SCTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEEC------TTCCCC-EECTTTTTTCTTCCEEECTTC-CCSEECTTTT
T ss_pred CCCcCcEEEccCCccCcCC-hhHhccCccceEEEC------CCCccc-eeChhhccCccccCeeeCCCC-cccccChhhh
Confidence 4567788877776554322 345678888888844 334332 234556888999999999988 4544 57788
Q ss_pred cCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccc-hhccccCcccEEecCCccccccc-CcccccccCC
Q 048758 365 GNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRHLKNSNVHSLEEM-PKGFGKLTSL 441 (777)
Q Consensus 365 ~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~-p~~~~~l~~L 441 (777)
+++++|++|++++|.++.+ |..++++++|++|++++| .+..++ ..+..+++|++|++++|. +..+ |..++.+++|
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 179 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQA 179 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCc-ccccChhhhhhhccc
Confidence 9999999999999999877 567888999999999998 565542 334458999999999988 5554 4557778887
Q ss_pred c--ccCcEEecCCC--CCCccccccccccCC---------------------------------------------cEEE
Q 048758 442 L--TLGRFVVGKDS--GSGLRQLKSLAHLQG---------------------------------------------RLKI 472 (777)
Q Consensus 442 ~--~L~~~~~~~~~--~~~~~~l~~L~~L~~---------------------------------------------~l~i 472 (777)
+ .|++..+.... ...+. ...++.+.. .+..
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred ceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 7 33322211110 00000 001110000 0000
Q ss_pred ccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCc-ccCCCCCCCee
Q 048758 473 SKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPI-WLGDSSFSKLV 551 (777)
Q Consensus 473 ~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~ 551 (777)
..+.. ..........+..+++|+.|+++.+... ..+..+..+++|+.|++++|.+..++. .+. .+++|+
T Consensus 259 L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~ 328 (606)
T 3t6q_A 259 INLQK-HYFFNISSNTFHCFSGLQELDLTATHLS-------ELPSGLVGLSTLKKLVLSANKFENLCQISAS--NFPSLT 328 (606)
T ss_dssp EECTT-CCCSSCCTTTTTTCTTCSEEECTTSCCS-------CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG--GCTTCS
T ss_pred EEeec-CccCccCHHHhccccCCCEEeccCCccC-------CCChhhcccccCCEEECccCCcCcCchhhhh--ccCcCC
Confidence 00000 0111122223444555555555543211 122334445555555555555544322 222 355566
Q ss_pred EEEEeCCCCCCCCC--CCCCCCCcceeeecCCCCceEe--CcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCC
Q 048758 552 QLKLEGCGKCTSLP--SVGQLPFLKELLISGMDGVKIV--GLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPR 627 (777)
Q Consensus 552 ~L~L~~~~~~~~l~--~~~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 627 (777)
.|++++|.....++ .++.+++|++|++++|...... +..+. .+++|+.|+++++.-. .+. .....
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------~l~~L~~L~l~~n~l~-~~~----~~~~~ 397 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR------NLSHLQSLNLSYNEPL-SLK----TEAFK 397 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT------TCTTCCEEECCSCSCE-EEC----TTTTT
T ss_pred EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc------cCCCCCEEECCCCcCC-cCC----HHHhc
Confidence 66665555443343 2555666666666655432222 11111 2566666666655311 110 11122
Q ss_pred CCCCccEEEEecCCCc----ccccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCccccc--cccCCCCCCC
Q 048758 628 RLLLLETLDITSCDQL----LVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRS--ETRLPQDIRS 696 (777)
Q Consensus 628 ~l~~L~~L~l~~c~~l----~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~--~~~~~~~l~~ 696 (777)
.+++|++|++++|..- +..+..+++|++|++++|.... +..++.|+.|++++|...... ....+..+++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 3455666666665421 1225556666666666654322 233456666666665443211 1123445566
Q ss_pred CCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCC
Q 048758 697 LNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGC 760 (777)
Q Consensus 697 L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 760 (777)
|++|++++| .+..++... +..+ ++|++|++++|......|..+..+++| +|++++|
T Consensus 478 L~~L~Ls~n-~l~~~~~~~-----~~~l-~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 478 LEILVLSFC-DLSSIDQHA-----FTSL-KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CCEEECTTS-CCCEECTTT-----TTTC-TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ccEEECCCC-ccCccChhh-----hccc-cCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 666666665 333332111 1222 566666666643333445556666666 6666655
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.1e-27 Score=267.39 Aligned_cols=406 Identities=18% Similarity=0.193 Sum_probs=213.9
Q ss_pred CCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccchhhhccc
Q 048758 313 QHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPESINSLY 391 (777)
Q Consensus 313 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 391 (777)
++++.| +++.+.+. ...+..|.++++|++|+|++| .+..+ |..|+++++|++|++++|.++.+|.. .++
T Consensus 21 ~~L~~L------~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTIL------NISQNYIS-ELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp TTCSEE------ECCSSCCC-CCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred ccccEE------ECCCCccc-ccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 566666 33334332 234456788888999999888 56554 67888888999999998888888877 788
Q ss_pred cCcEEeeCCCcCccc--cchhccccCcccEEecCCcccccccCcccccccCC--cccCcEEecCC-CCCCcccccccccc
Q 048758 392 NLHTILLEDCWKLKK--LCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSL--LTLGRFVVGKD-SGSGLRQLKSLAHL 466 (777)
Q Consensus 392 ~L~~L~l~~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~~~~~~~~-~~~~~~~l~~L~~L 466 (777)
+|++|++++| .+.. +|..++++++|++|++++|. +.. ..++.+++| ++|.+..+... .......+..+..
T Consensus 91 ~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~- 165 (520)
T 2z7x_B 91 NLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT- 165 (520)
T ss_dssp CCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-
T ss_pred CccEEeccCC-ccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccccccc-
Confidence 8999999888 5543 56778888899999888887 443 346667777 77776665431 1111122222221
Q ss_pred CCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCC-----------------------
Q 048758 467 QGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHR----------------------- 523 (777)
Q Consensus 467 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~----------------------- 523 (777)
..+.+ .+.............+..+++|+.++++.+.....+.........+..++
T Consensus 166 -~~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 166 -ESLHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp -EEEEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred -ceEEE-EeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 01111 11111111112222334455555555554321111111122222333334
Q ss_pred ----CCCeEEEeecCCC-CCCcccCC---CCCCCeeEEEEeCCCCCCCCC--CCCCC---CCcceeeecCCCCceEeCcc
Q 048758 524 ----DVQELTITGYSGT-KFPIWLGD---SSFSKLVQLKLEGCGKCTSLP--SVGQL---PFLKELLISGMDGVKIVGLE 590 (777)
Q Consensus 524 ----~L~~L~l~~~~~~-~~p~~~~~---~~l~~L~~L~L~~~~~~~~l~--~~~~l---~~L~~L~L~~~~~l~~~~~~ 590 (777)
+|+.|++++|.+. .+|.++.. ..+++|+.+++.+|.. .+| .+..+ ++|+.|++++|......
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--- 318 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--- 318 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC---
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc---
Confidence 4555555555543 44544410 1455555566555543 233 11111 34666666655321110
Q ss_pred cccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC-----cccccCCCCCccEEEEcCCCCcc
Q 048758 591 FYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ-----LLVTIQCLPALSELQIDGCKRVV 665 (777)
Q Consensus 591 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~-----l~~~~~~l~~L~~L~l~~~~~l~ 665 (777)
+. ..+++|+.|+++++.-... .+ .....+++|++|++++|.- +|..+..+++|++|++++|....
T Consensus 319 ~~-----~~l~~L~~L~Ls~n~l~~~-~~----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 319 CP-----SKISPFLHLDFSNNLLTDT-VF----ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CC-----SSCCCCCEEECCSSCCCTT-TT----TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred ch-----hhCCcccEEEeECCccChh-hh----hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 00 1256666666666532110 00 1113456666666666642 22345566666666666665332
Q ss_pred ------cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCC
Q 048758 666 ------FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGL 739 (777)
Q Consensus 666 ------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l 739 (777)
+..++.|+.|++++|......+.... ++|++|++++| .+..+|.... .+ ++|++|++++| .+
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~---~~L~~L~Ls~N-~l~~ip~~~~------~l-~~L~~L~L~~N-~l 456 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP---PRIKVLDLHSN-KIKSIPKQVV------KL-EALQELNVASN-QL 456 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC---TTCCEEECCSS-CCCCCCGGGG------GC-TTCCEEECCSS-CC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc---ccCCEEECCCC-cccccchhhh------cC-CCCCEEECCCC-cC
Confidence 23345666666666554332222221 46666666664 4555554332 12 56666666663 55
Q ss_pred CCchhh-cCCCCCccEEEecCCCC
Q 048758 740 TRLPQA-LLTLSSLTEMRIYGCTS 762 (777)
Q Consensus 740 ~~lp~~-~~~l~~L~~L~l~~c~~ 762 (777)
+.+|.. +..+++|++|++++|+.
T Consensus 457 ~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 457 KSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCHHHhccCCcccEEECcCCCC
Confidence 566654 55666666666666543
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=6.3e-27 Score=270.29 Aligned_cols=456 Identities=16% Similarity=0.094 Sum_probs=254.1
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCc-cc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPN-EI 364 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i 364 (777)
.+..++++.+..+...... ...+..+++|+.|... .+.+. ...+..|.++++|++|+|++| .+..+|. .|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls------~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVG------FNTIS-KLEPELCQKLPMLKVLNLQHN-ELSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECC------SSCCC-CCCTTHHHHCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECC------CCccC-ccCHHHHhcccCcCEEECCCC-ccCccChhhh
Confidence 4567888888877655432 3457788999998443 33332 233456888999999999998 7888876 58
Q ss_pred cCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcc-c--ccccC
Q 048758 365 GNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKG-F--GKLTS 440 (777)
Q Consensus 365 ~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~-~--~~l~~ 440 (777)
+++++|++|++++|.++.+| ..++++++|++|++++|......|..++++++|++|++++|. +..++.. + ..+++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSS 172 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhcccccc
Confidence 99999999999999999876 568999999999999994434445668899999999999988 5555432 3 24567
Q ss_pred CcccCcEEecCCC--CCCcccccccccc------------------------CCcEEEccccccCCcccchhhccCcccc
Q 048758 441 LLTLGRFVVGKDS--GSGLRQLKSLAHL------------------------QGRLKISKLENVKDVGDASEAQLNNKVN 494 (777)
Q Consensus 441 L~~L~~~~~~~~~--~~~~~~l~~L~~L------------------------~~~l~i~~l~~~~~~~~~~~~~l~~~~~ 494 (777)
|++|++..+.... ...+..+.++..+ . .+.+.. .......+..+..++.
T Consensus 173 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~-~L~L~~----n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIR-NLSLSN----SQLSTTSNTTFLGLKW 247 (680)
T ss_dssp ESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCC-EEECTT----SCCCEECTTTTGGGGG
T ss_pred ccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhcccc-EEEccC----CcccccChhHhhccCc
Confidence 7777654432211 1222222222211 1 111111 0111112222333322
Q ss_pred --cccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCC-cccC----------------------------
Q 048758 495 --LEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFP-IWLG---------------------------- 543 (777)
Q Consensus 495 --L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~---------------------------- 543 (777)
|+.|+++.+.. .......++.+++|+.|++++|.+...+ ..+.
T Consensus 248 ~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 248 TNLTMLDLSYNNL------NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp SCCCEEECTTSCC------CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred CCCCEEECCCCCc------CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence 55555543321 1111122334444555555444432221 1111
Q ss_pred ---CCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeecCCCC-ceEeCcccccC---------------------CCC
Q 048758 544 ---DSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLISGMDG-VKIVGLEFYGN---------------------ICS 597 (777)
Q Consensus 544 ---~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~~~-l~~~~~~~~~~---------------------~~~ 597 (777)
...+++|+.|++++|......+ .+..+++|++|++++|.. +..++...+.. ...
T Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT
T ss_pred hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh
Confidence 1135566666666665433333 456666666666665531 11111110000 000
Q ss_pred CCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCc---ccccCCCCCccEEEEcCCCCc-------ccC
Q 048758 598 VPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQL---LVTIQCLPALSELQIDGCKRV-------VFS 667 (777)
Q Consensus 598 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l---~~~~~~l~~L~~L~l~~~~~l-------~~~ 667 (777)
..+++|+.|+++++.-...+ .......+++|++|++++|... +..+..+++|+.|++++|..- .+.
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~ 477 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQEL----TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477 (680)
T ss_dssp TTCTTCCEEECCSSCCEEEC----CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT
T ss_pred hCCCCCCEEeCCCCcCcccc----CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccc
Confidence 11333444444433211000 0001123445555555555311 233445555666666555421 133
Q ss_pred CCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcccccccc---ccCCCCCcCCcccEEeeecCCCCCCchh
Q 048758 668 SPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEE---HDQQQPELPCRLQFLELRNCEGLTRLPQ 744 (777)
Q Consensus 668 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~~~~~l~~~L~~L~l~~c~~l~~lp~ 744 (777)
.++.|+.|++++|. ++..+...+..+++|++|+++++ .+..++.... ....+..+ ++|++|++++| .++.+|.
T Consensus 478 ~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~N-~l~~i~~ 553 (680)
T 1ziw_A 478 PLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGL-SHLHILNLESN-GFDEIPV 553 (680)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTC-TTCCEEECCSS-CCCCCCT
T ss_pred cCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCC-CCCCEEECCCC-CCCCCCH
Confidence 45777888887765 34556666778888888888885 5665532110 00012333 78999999994 7778875
Q ss_pred -hcCCCCCccEEEecCCCCCccccCCCC
Q 048758 745 -ALLTLSSLTEMRIYGCTSLVSFPEVAL 771 (777)
Q Consensus 745 -~~~~l~~L~~L~l~~c~~l~~lp~~~~ 771 (777)
.+..+++|++|++++ +.++.+|...+
T Consensus 554 ~~~~~l~~L~~L~Ls~-N~l~~l~~~~~ 580 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGL-NNLNTLPASVF 580 (680)
T ss_dssp TTTTTCTTCCEEECCS-SCCCCCCTTTT
T ss_pred HHcccccCcceeECCC-CCCCcCCHhHh
Confidence 478999999999986 47788887643
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=8e-28 Score=273.47 Aligned_cols=349 Identities=12% Similarity=0.117 Sum_probs=155.6
Q ss_pred cccccchhhhccccCcEEeeCCCcCccc------------------cchhcc--ccCcccEEecCCcccccccCcccccc
Q 048758 379 RIQILPESINSLYNLHTILLEDCWKLKK------------------LCKDMG--NLTKLRHLKNSNVHSLEEMPKGFGKL 438 (777)
Q Consensus 379 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~------------------lp~~~~--~L~~L~~L~l~~~~~~~~~p~~~~~l 438 (777)
.++.+|..++++++|++|++++| .+.. +|..++ ++++|++|++++|.....+|..++++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 44455666666666666666666 3444 565555 66666666666665555555556666
Q ss_pred cCCcccCcEEecCCCC-CCccccccc------cccCCcEEEccccccCCcccchhh--ccCcccccccceEeeccCCCcc
Q 048758 439 TSLLTLGRFVVGKDSG-SGLRQLKSL------AHLQGRLKISKLENVKDVGDASEA--QLNNKVNLEALILEWSARSERC 509 (777)
Q Consensus 439 ~~L~~L~~~~~~~~~~-~~~~~l~~L------~~L~~~l~i~~l~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~ 509 (777)
++|++|++..+....+ .....+..+ +.|+ .+.+... ... ..+. .+..+++|+.|+++.+..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n----~l~-~ip~~~~l~~l~~L~~L~L~~N~l---- 342 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYN----NLK-TFPVETSLQKMKKLGMLECLYNQL---- 342 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSS----CCS-SCCCHHHHTTCTTCCEEECCSCCC----
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCC----cCC-ccCchhhhccCCCCCEEeCcCCcC----
Confidence 6665554332220000 000001111 1111 1121111 111 2233 455556666666654321
Q ss_pred chHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCC-eeEEEEeCCCCCCCCC-CCCCC--CCcceeeecCCCCce
Q 048758 510 EFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSK-LVQLKLEGCGKCTSLP-SVGQL--PFLKELLISGMDGVK 585 (777)
Q Consensus 510 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~-L~~L~L~~~~~~~~l~-~~~~l--~~L~~L~L~~~~~l~ 585 (777)
....+ .++.+++|+.|++++|.+..+|.++. .+++ |+.|++++|... .+| .++.+ ++|++|++++|....
T Consensus 343 --~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~--~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 343 --EGKLP-AFGSEIKLASLNLAYNQITEIPANFC--GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp --EEECC-CCEEEEEESEEECCSSEEEECCTTSE--EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred --ccchh-hhCCCCCCCEEECCCCccccccHhhh--hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCC
Confidence 11111 44445566666666666555555544 3555 666666666533 444 33332 356666666554332
Q ss_pred EeCccccc-CCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC--ccccc--------CCCCCcc
Q 048758 586 IVGLEFYG-NICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ--LLVTI--------QCLPALS 654 (777)
Q Consensus 586 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~--l~~~~--------~~l~~L~ 654 (777)
..+..+.. ......+++|+.|+++++.-- .+ ...+...+++|++|++++|.- +|... ..+++|+
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l----p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~ 491 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS-KF----PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT 491 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SC----CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC
T ss_pred cchhhhcccccccccCCCCCEEECcCCccC-cC----CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc
Confidence 22222210 000012445666666654310 00 000011345566666665531 12111 1122566
Q ss_pred EEEEcCCCCcc----cC--CCCCccEEEEeecCccccccccCCCCCCCCCeEEccCC------CCCccccccccccCCCC
Q 048758 655 ELQIDGCKRVV----FS--SPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRC------PQLLSLVTEEEHDQQQP 722 (777)
Q Consensus 655 ~L~l~~~~~l~----~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c------~~l~~l~~~~~~~~~~~ 722 (777)
+|++++|.... +. .++.|+.|++++|.... .+. .+..+++|++|++++| .-...+|... .
T Consensus 492 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~-~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l------~ 563 (636)
T 4eco_A 492 SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPT-QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI------T 563 (636)
T ss_dssp EEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCC-GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG------G
T ss_pred EEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cCh-hhhcCCCCCEEECCCCcccccCcccccChHHH------h
Confidence 66666654322 11 44555666665554332 222 2234556666665432 1122333222 1
Q ss_pred CcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCC
Q 048758 723 ELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCT 761 (777)
Q Consensus 723 ~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 761 (777)
.+ ++|++|++++| .++.+|..+. ++|++|++++|+
T Consensus 564 ~l-~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 564 LC-PSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp GC-SSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCT
T ss_pred cC-CCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCC
Confidence 12 45666666653 3355555433 566666666553
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=6.3e-28 Score=274.34 Aligned_cols=372 Identities=15% Similarity=0.134 Sum_probs=247.7
Q ss_pred HHHHHccCCceeEEeecCccCccc------------------cCcccc--CcCccCeeeccCCccc-ccchhhhccccCc
Q 048758 336 LQMLLNHLPRLRVFSLRGYCNIFN------------------LPNEIG--NLKHLRCLNLSRTRIQ-ILPESINSLYNLH 394 (777)
Q Consensus 336 ~~~~~~~l~~L~~L~L~~~~~l~~------------------lp~~i~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~ 394 (777)
+|..+.++++|++|+|++| .+.. +|..++ ++++|++|++++|.+. .+|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4455777888888888877 4555 777777 8888888888887755 6777788888888
Q ss_pred EEeeCCCcCcc--ccchhcccc------CcccEEecCCcccccccCc--ccccccCCcccCcEEecCCCCCCcccccccc
Q 048758 395 TILLEDCWKLK--KLCKDMGNL------TKLRHLKNSNVHSLEEMPK--GFGKLTSLLTLGRFVVGKDSGSGLRQLKSLA 464 (777)
Q Consensus 395 ~L~l~~~~~l~--~lp~~~~~L------~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 464 (777)
+|++++|..+. .+|..++++ ++|++|++++|. +..+|. .++++++|++|++..+..
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l------------- 342 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQL------------- 342 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCC-------------
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcC-------------
Confidence 88888874244 477777766 788888888877 557777 677777777775432211
Q ss_pred ccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCC-CCeEEEeecCCCCCCcccC
Q 048758 465 HLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRD-VQELTITGYSGTKFPIWLG 543 (777)
Q Consensus 465 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~ 543 (777)
....+ .+..+++|+.|+++.+. .. ..+..+..+++ |+.|++++|.+..+|.++.
T Consensus 343 -----------------~g~ip-~~~~l~~L~~L~L~~N~------l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 343 -----------------EGKLP-AFGSEIKLASLNLAYNQ------IT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp -----------------EEECC-CCEEEEEESEEECCSSE------EE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred -----------------ccchh-hhCCCCCCCEEECCCCc------cc-cccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 10111 34455677777776542 11 33445666777 9999999988888888776
Q ss_pred CCCCCCeeEEEEeCCCCCCCCC-CCC-------CCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchh
Q 048758 544 DSSFSKLVQLKLEGCGKCTSLP-SVG-------QLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWE 615 (777)
Q Consensus 544 ~~~l~~L~~L~L~~~~~~~~l~-~~~-------~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 615 (777)
...+++|+.|++++|.....+| .++ .+++|++|++++|.. ..++...+.. +++|+.|+++++.-.
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~~~~~-----l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKELFST-----GSPLSSINLMGNMLT- 470 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTHHHHT-----TCCCSEEECCSSCCS-
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHHHHcc-----CCCCCEEECCCCCCC-
Confidence 4445689999999888766555 455 677899999988753 3444433322 788999999887521
Q ss_pred hhhccccCCC---CCCCCCccEEEEecCC--CcccccC--CCCCccEEEEcCCCCcc----cCCCCCccEEEEeecC---
Q 048758 616 EWIPCGAGTL---PRRLLLLETLDITSCD--QLLVTIQ--CLPALSELQIDGCKRVV----FSSPHLVHAVNVREQA--- 681 (777)
Q Consensus 616 ~~~~~~~~~~---~~~l~~L~~L~l~~c~--~l~~~~~--~l~~L~~L~l~~~~~l~----~~~~~~L~~L~l~~~~--- 681 (777)
.+........ ...+++|+.|++++|. .+|..+. .+++|++|++++|.... +..++.|+.|++++|.
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls 550 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTT
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccc
Confidence 2111000000 0122389999999885 4566665 88999999999987443 3346889999987643
Q ss_pred --ccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCC-----CchhhcCC---CCC
Q 048758 682 --YFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLT-----RLPQALLT---LSS 751 (777)
Q Consensus 682 --~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~-----~lp~~~~~---l~~ 751 (777)
.+....+..+..+++|++|++++| .+..+|... +++|++|++++|+... ..|..... +..
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~~---------~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 620 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKI---------TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC---------CTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEEC
T ss_pred cCcccccChHHHhcCCCCCEEECCCC-cCCccCHhH---------hCcCCEEECcCCCCccccHHhcchhhhcccceeec
Confidence 223333445667899999999997 568887543 2799999999975332 12322222 233
Q ss_pred ccEEEecCCCCCc
Q 048758 752 LTEMRIYGCTSLV 764 (777)
Q Consensus 752 L~~L~l~~c~~l~ 764 (777)
.+..++.+|+.+.
T Consensus 621 ~~~~~i~~C~~L~ 633 (636)
T 4eco_A 621 DKTQDIRGCDALD 633 (636)
T ss_dssp CTTSEEESCGGGC
T ss_pred CCccccCCCcccc
Confidence 4556888998764
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=3.9e-27 Score=271.74 Aligned_cols=341 Identities=15% Similarity=0.148 Sum_probs=168.7
Q ss_pred cccccchhhhccccCcEEeeCCCcCccc------------------cchhcc--ccCcccEEecCCcccccccCcccccc
Q 048758 379 RIQILPESINSLYNLHTILLEDCWKLKK------------------LCKDMG--NLTKLRHLKNSNVHSLEEMPKGFGKL 438 (777)
Q Consensus 379 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~------------------lp~~~~--~L~~L~~L~l~~~~~~~~~p~~~~~l 438 (777)
.++.+|..++++++|++|++++| .+.. +|..++ ++++|++|++++|.....+|..++++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred cccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 34446777777777777777777 4554 677666 77777777777776666677777777
Q ss_pred cCCcccCcEEecCCCC-CCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcc
Q 048758 439 TSLLTLGRFVVGKDSG-SGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLS 517 (777)
Q Consensus 439 ~~L~~L~~~~~~~~~~-~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 517 (777)
++|+.|++..+....+ .....+..+. ..+..+++|+.|+++.+.. . ..+.
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~----------------------~~~~~l~~L~~L~Ls~N~L------~-~ip~ 565 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLA----------------------DDEDTGPKIQIFYMGYNNL------E-EFPA 565 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHH----------------------HCTTTTTTCCEEECCSSCC------C-BCCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhh----------------------hcccccCCccEEEeeCCcC------C-ccCC
Confidence 7777664433220000 0000000000 0122333555555554321 1 1222
Q ss_pred --cCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCC-cceeeecCCCCceEeCccccc
Q 048758 518 --MLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPF-LKELLISGMDGVKIVGLEFYG 593 (777)
Q Consensus 518 --~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~-L~~L~L~~~~~l~~~~~~~~~ 593 (777)
.++.+++|+.|++++|.+..+| .+. .+++|+.|+|++|... .+| .+..+++ |++|+|++|. +..++..+..
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~lp-~~~--~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~ 640 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRHLE-AFG--TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA 640 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCBCC-CCC--TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCT
T ss_pred hhhhhcCCCCCEEECCCCCcccch-hhc--CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCchhhhc
Confidence 3455556666666666655555 332 4566666666666533 444 4555665 6666666554 2233322111
Q ss_pred CCCCCCCCCCceeeccCccchhhhhccccCCCC-CCCCCccEEEEecCC--Cccccc-CCCCCccEEEEcCCCCcccCC-
Q 048758 594 NICSVPFPSLEALSFSDMTEWEEWIPCGAGTLP-RRLLLLETLDITSCD--QLLVTI-QCLPALSELQIDGCKRVVFSS- 668 (777)
Q Consensus 594 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~l~~L~~L~l~~c~--~l~~~~-~~l~~L~~L~l~~~~~l~~~~- 668 (777)
...++|+.|+++++.-... .+.....+. ..+++|+.|++++|. .+|..+ ..+++|+.|++++|..-.+..
T Consensus 641 ----~~~~~L~~L~Ls~N~l~g~-ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 641 ----KSVYVMGSVDFSYNKIGSE-GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp ----TCSSCEEEEECCSSCTTTT-SSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred ----cccCCCCEEECcCCcCCCc-cccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 1123466666665532110 000000000 122356666666653 223222 245666666666654222111
Q ss_pred ----C-------CCccEEEEeecCccccccccCC-CCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeec-
Q 048758 669 ----P-------HLVHAVNVREQAYFWRSETRLP-QDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRN- 735 (777)
Q Consensus 669 ----~-------~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~- 735 (777)
. +.|+.|++++|... ..+...+ ..+++|+.|++++| .+..+|.... .+ ++|++|++++
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~------~L-~~L~~L~Ls~N 786 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPL------NS-SQLKAFGIRHQ 786 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGG------GC-TTCCEEECCCC
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCC-CCCccchhhh------cC-CCCCEEECCCC
Confidence 0 15666666665333 3333332 35566666666664 4444544332 12 5566666654
Q ss_pred -----CCCCCCchhhcCCCCCccEEEecCCCCCccccCC
Q 048758 736 -----CEGLTRLPQALLTLSSLTEMRIYGCTSLVSFPEV 769 (777)
Q Consensus 736 -----c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~ 769 (777)
|.....+|..+..+++|++|++++|.. +.||..
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 333445565566666666666665543 666654
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=269.34 Aligned_cols=399 Identities=22% Similarity=0.241 Sum_probs=277.8
Q ss_pred HHHHccCCceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccch-hccc
Q 048758 337 QMLLNHLPRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCK-DMGN 413 (777)
Q Consensus 337 ~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~~~~ 413 (777)
+..|.++++|++|+|++| .+..+ |..|+++++|++|++++|.++.+| ..++++++|++|++++| .+..+|. .+++
T Consensus 45 ~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~ 122 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGH 122 (570)
T ss_dssp TTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTT
T ss_pred hhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccc
Confidence 335789999999999999 67776 467899999999999999999776 67999999999999999 7777765 5899
Q ss_pred cCcccEEecCCccccc--ccCcccccccCCcccCcEEecCCC--CCCccccccccccCCcEEEccccccCCcccchhhcc
Q 048758 414 LTKLRHLKNSNVHSLE--EMPKGFGKLTSLLTLGRFVVGKDS--GSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQL 489 (777)
Q Consensus 414 L~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 489 (777)
+++|++|++++|. +. .+|..++++++|++|++..+.... ...+..+.+++.+...+.+..- ......+..+
T Consensus 123 l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n----~l~~~~~~~~ 197 (570)
T 2z63_A 123 LKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN----PMNFIQPGAF 197 (570)
T ss_dssp CTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC----CCCEECTTTT
T ss_pred cccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC----CceecCHHHh
Confidence 9999999999998 54 478889999999999765443222 1223333333211112222111 0111111111
Q ss_pred CcccccccceEeeccCCC---------------------------------------------------cc-chHHHhcc
Q 048758 490 NNKVNLEALILEWSARSE---------------------------------------------------RC-EFETQVLS 517 (777)
Q Consensus 490 ~~~~~L~~L~l~~~~~~~---------------------------------------------------~~-~~~~~~~~ 517 (777)
... +|+.|.+..+.... .. ........
T Consensus 198 ~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~ 276 (570)
T 2z63_A 198 KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276 (570)
T ss_dssp TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTT
T ss_pred ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchh
Confidence 111 33444333221000 00 01111223
Q ss_pred cCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCCCceEeCcccccCCCC
Q 048758 518 MLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMDGVKIVGLEFYGNICS 597 (777)
Q Consensus 518 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 597 (777)
.+..+++|+.|++.++.+..+|.++. .+ +|+.|++.+|... .+|. ..+++|++|++++|......+.
T Consensus 277 ~~~~l~~L~~L~l~~~~l~~l~~~~~--~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~-------- 343 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSVTIERVKDFSY--NF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSE-------- 343 (570)
T ss_dssp TTGGGTTCSEEEEESCEECSCCBCCS--CC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCC--------
T ss_pred hhcCcCcccEEEecCccchhhhhhhc--cC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCcccccccc--------
Confidence 45567899999999999999998887 46 9999999999754 6665 5789999999999865433322
Q ss_pred CCCCCCceeeccCccchhhh-hccccCCCCCCCCCccEEEEecCC--CcccccCCCCCccEEEEcCCCCcc------cCC
Q 048758 598 VPFPSLEALSFSDMTEWEEW-IPCGAGTLPRRLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVV------FSS 668 (777)
Q Consensus 598 ~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~~~~l~------~~~ 668 (777)
..+++|+.|+++++.--... .+ .....+++|++|++++|. .++..+..+++|++|++++|.... +..
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCS----QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEE----HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccCCCCCEEeCcCCccCcccccc----ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 23899999999987521100 00 011347899999999996 334558899999999999986332 456
Q ss_pred CCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCC-ccccccccccCCCCCcCCcccEEeeecCCCCCCc-hhhc
Q 048758 669 PHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQL-LSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRL-PQAL 746 (777)
Q Consensus 669 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~l-p~~~ 746 (777)
++.|+.|++.+|... ......+..+++|++|++++|.-. ..+|... ..+ ++|++|++++| .++.+ |..+
T Consensus 420 l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~------~~l-~~L~~L~l~~n-~l~~~~~~~~ 490 (570)
T 2z63_A 420 LRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------TEL-RNLTFLDLSQC-QLEQLSPTAF 490 (570)
T ss_dssp CTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCC------TTC-TTCCEEECTTS-CCCEECTTTT
T ss_pred CCCCCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhh------hcc-cCCCEEECCCC-ccccCChhhh
Confidence 789999999998654 344566788999999999998432 2355333 333 79999999997 55555 7888
Q ss_pred CCCCCccEEEecCCCCCccccCCC
Q 048758 747 LTLSSLTEMRIYGCTSLVSFPEVA 770 (777)
Q Consensus 747 ~~l~~L~~L~l~~c~~l~~lp~~~ 770 (777)
..+++|++|++++| .++.+|...
T Consensus 491 ~~l~~L~~L~l~~n-~l~~~~~~~ 513 (570)
T 2z63_A 491 NSLSSLQVLNMASN-QLKSVPDGI 513 (570)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTT
T ss_pred hcccCCCEEeCCCC-cCCCCCHHH
Confidence 99999999999987 567776543
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2e-26 Score=262.52 Aligned_cols=415 Identities=16% Similarity=0.179 Sum_probs=268.7
Q ss_pred CccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-cCccccCcCccCeeeccCCccccc-chhhhccc
Q 048758 314 HLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEIGNLKHLRCLNLSRTRIQIL-PESINSLY 391 (777)
Q Consensus 314 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~ 391 (777)
.++.| +++.+.+. ...+..|.++++|++|+|++| .+.. .|..|+++++|++|++++|.+..+ |..+++++
T Consensus 34 ~l~~L------~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 34 STECL------EFSFNVLP-TIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp TCCEE------ECTTCCCS-EECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred cCcEE------EccCCccC-cCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 46666 44445443 234556889999999999999 5555 578899999999999999999865 67899999
Q ss_pred cCcEEeeCCCcCcccc-chhccccCcccEEecCCcccccccC-cccccccCCcccCcEEecCCC--CCCccccccccccC
Q 048758 392 NLHTILLEDCWKLKKL-CKDMGNLTKLRHLKNSNVHSLEEMP-KGFGKLTSLLTLGRFVVGKDS--GSGLRQLKSLAHLQ 467 (777)
Q Consensus 392 ~L~~L~l~~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L~ 467 (777)
+|++|++++| .+..+ |..++++++|++|++++|. +..++ ..+..+++|++|++..+.... ...+..+.+++.+
T Consensus 106 ~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l- 182 (606)
T 3t6q_A 106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL- 182 (606)
T ss_dssp TCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE-
T ss_pred cccEeecccc-CcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee-
Confidence 9999999999 66666 5668999999999999998 55542 334458889888765543322 1223334333322
Q ss_pred CcEEEccccccCCcccchhhccCcccccccceEeeccC-----------------------C------------------
Q 048758 468 GRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSAR-----------------------S------------------ 506 (777)
Q Consensus 468 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-----------------------~------------------ 506 (777)
.+.+.... .....+..+. ..+|+.+++..+.. .
T Consensus 183 -~L~l~~n~----l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 183 -SLNLNGND----IAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp -EEECTTCC----CCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred -EEecCCCc----cCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 12222111 1111111111 12233332221110 0
Q ss_pred -----CccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeecC
Q 048758 507 -----ERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLISG 580 (777)
Q Consensus 507 -----~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~ 580 (777)
..+.........+..+++|+.|++++|.+..+|..+. .+++|+.|++++|......| .++.+++|++|++++
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV--GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCC--SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhc--ccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 0001111112235667788888888888888887765 57888888888886544334 677788888888888
Q ss_pred CCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC---cccccCCCCCccEEE
Q 048758 581 MDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ---LLVTIQCLPALSELQ 657 (777)
Q Consensus 581 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~L~ 657 (777)
|.....++..... .+++|+.|+++++.-... .. .......+++|++|++++|.. .+..+..+++|++|+
T Consensus 335 n~~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~-~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 335 NTKRLELGTGCLE-----NLENLRELDLSHDDIETS-DC--CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSSCCBCCSSTTT-----TCTTCCEEECCSSCCCEE-EE--STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCcccccchhhhh-----ccCcCCEEECCCCccccc-cC--cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 7654344333222 278888888887642111 00 011224578899999998863 255677889999999
Q ss_pred EcCCCCcc------cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcc--ccccccccCCCCCcCCccc
Q 048758 658 IDGCKRVV------FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLS--LVTEEEHDQQQPELPCRLQ 729 (777)
Q Consensus 658 l~~~~~l~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~~~~l~~~L~ 729 (777)
+++|.... +..++.|+.|++++|.. .......+..+++|++|++++|. +.. ++... .+..+ ++|+
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~----~~~~l-~~L~ 479 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTN----SLQTL-GRLE 479 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCC-BTTCTTTTTTCTTCCEEECTTCB-CGGGEECSSC----GGGGC-TTCC
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCcc-CCcCHHHHhCCCCCCEEECCCCC-CCccccccch----hhccC-CCcc
Confidence 99987432 34568899999988764 44445567788999999999974 433 11100 01223 7999
Q ss_pred EEeeecCCCCCCc-hhhcCCCCCccEEEecCCCCC
Q 048758 730 FLELRNCEGLTRL-PQALLTLSSLTEMRIYGCTSL 763 (777)
Q Consensus 730 ~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~l 763 (777)
+|++++| .++.+ |..+..+++|++|++++|..-
T Consensus 480 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 480 ILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp EEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEECCCC-ccCccChhhhccccCCCEEECCCCccC
Confidence 9999997 45544 678889999999999988543
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.7e-27 Score=274.69 Aligned_cols=344 Identities=17% Similarity=0.146 Sum_probs=213.1
Q ss_pred HHHHccCCceeEEeecCccCccc------------------cCcccc--CcCccCeeeccCCccc-ccchhhhccccCcE
Q 048758 337 QMLLNHLPRLRVFSLRGYCNIFN------------------LPNEIG--NLKHLRCLNLSRTRIQ-ILPESINSLYNLHT 395 (777)
Q Consensus 337 ~~~~~~l~~L~~L~L~~~~~l~~------------------lp~~i~--~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~ 395 (777)
|..+.++++|++|+|++| .+.. +|..++ ++++|++|+|++|.+. .+|..++++++|++
T Consensus 441 P~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 441 SKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp CGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 344666666666666666 3444 666665 6666666666666544 56666666666666
Q ss_pred EeeCCCcCcc--ccchhccccC-------cccEEecCCcccccccCc--ccccccCCcccCcEEecCCCCCCcccccccc
Q 048758 396 ILLEDCWKLK--KLCKDMGNLT-------KLRHLKNSNVHSLEEMPK--GFGKLTSLLTLGRFVVGKDSGSGLRQLKSLA 464 (777)
Q Consensus 396 L~l~~~~~l~--~lp~~~~~L~-------~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 464 (777)
|++++|..+. .+|..+++++ +|++|++++|. +..+|. .++++++|+.|++..+.
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-------------- 584 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-------------- 584 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC--------------
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC--------------
Confidence 6666663243 3565555554 66666666666 446666 56666666665332211
Q ss_pred ccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCC-CCeEEEeecCCCCCCcccC
Q 048758 465 HLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRD-VQELTITGYSGTKFPIWLG 543 (777)
Q Consensus 465 ~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~p~~~~ 543 (777)
.. ..+ .+..+++|+.|+++.+.. . ..+..+..+++ |+.|++++|.+..+|.++.
T Consensus 585 ----------------l~-~lp-~~~~L~~L~~L~Ls~N~l------~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 585 ----------------VR-HLE-AFGTNVKLTDLKLDYNQI------E-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp ----------------CC-BCC-CCCTTSEESEEECCSSCC------S-CCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred ----------------cc-cch-hhcCCCcceEEECcCCcc------c-cchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence 11 112 456667788888875532 1 23445667777 9999999998888887776
Q ss_pred CCCCCCeeEEEEeCCCCCCCCCCCC------CCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhh
Q 048758 544 DSSFSKLVQLKLEGCGKCTSLPSVG------QLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEW 617 (777)
Q Consensus 544 ~~~l~~L~~L~L~~~~~~~~l~~~~------~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 617 (777)
....++|+.|+|++|.....+|.+. .+++|++|++++|.. ..++...... +++|+.|+++++. +..+
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L-~~lp~~~~~~-----l~~L~~L~Ls~N~-L~~i 712 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI-QKFPTELFAT-----GSPISTIILSNNL-MTSI 712 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC-CSCCHHHHHT-----TCCCSEEECCSCC-CSCC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC-CccCHHHHcc-----CCCCCEEECCCCc-CCcc
Confidence 4344569999999987665555332 345899999988753 3454443322 7889999998874 2221
Q ss_pred hccccCCC---CCCCCCccEEEEecCC--CcccccC--CCCCccEEEEcCCCCcc----cCCCCCccEEEEeecC-----
Q 048758 618 IPCGAGTL---PRRLLLLETLDITSCD--QLLVTIQ--CLPALSELQIDGCKRVV----FSSPHLVHAVNVREQA----- 681 (777)
Q Consensus 618 ~~~~~~~~---~~~l~~L~~L~l~~c~--~l~~~~~--~l~~L~~L~l~~~~~l~----~~~~~~L~~L~l~~~~----- 681 (777)
........ ...+++|+.|++++|. .+|..+. .+++|+.|++++|.... +..++.|+.|++++|.
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred ChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccc
Confidence 11111100 1123488999998885 4566666 88899999999886433 2345777777776643
Q ss_pred ccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCC
Q 048758 682 YFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEG 738 (777)
Q Consensus 682 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~ 738 (777)
.+....+..+.++++|++|++++| .+..+|... +++|+.|+|++|+.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l---------~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL---------TPQLYILDIADNPN 839 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCC---------CSSSCEEECCSCTT
T ss_pred cccccChHHHhcCCCCCEEECCCC-CCCccCHhh---------cCCCCEEECCCCCC
Confidence 222233344556778888888886 456666432 25788888888653
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.2e-26 Score=261.08 Aligned_cols=445 Identities=17% Similarity=0.153 Sum_probs=275.4
Q ss_pred CccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCcc-cc
Q 048758 287 SQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNE-IG 365 (777)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~ 365 (777)
...++.+.+..+...... ...+..+++|+.|... .+.+. ...+..|.++++|++|+|++| .+..+|.. ++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls------~n~i~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 95 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIG-HGDLRACANLQVLILK------SSRIN-TIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFG 95 (549)
T ss_dssp CTTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECT------TSCCC-EECTTTTTTCTTCCEEECTTS-CCCSCCHHHHT
T ss_pred CCCccEEECcCCccCccC-hhhhhcCCcccEEECC------CCCcC-ccChhhccccccCCEEECCCC-ccCccCHHHhc
Confidence 356777777776543321 2346678888888443 33332 233455788888999999888 66666554 88
Q ss_pred CcCccCeeeccCCcccc--cchhhhccccCcEEeeCCCcCccccc-hhccccCcccEEecCCcccccccCcccccccCCc
Q 048758 366 NLKHLRCLNLSRTRIQI--LPESINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLL 442 (777)
Q Consensus 366 ~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 442 (777)
++++|++|++++|.++. .|..++++++|++|++++|..+..+| ..++++++|++|++++|......|..++.+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 88889999998888884 46678888889999988885567776 4688888888888888884455677788888777
Q ss_pred ccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcc-----
Q 048758 443 TLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLS----- 517 (777)
Q Consensus 443 ~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----- 517 (777)
+|++..+....... .....++.|+ .+.+..... .............+++|+.|.+..+.... ........
T Consensus 176 ~L~l~~n~~~~~~~-~~~~~l~~L~-~L~L~~n~l-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~~~ 250 (549)
T 2z81_A 176 HLTLHLSESAFLLE-IFADILSSVR-YLELRDTNL-ARFQFSPLPVDEVSSPMKKLAFRGSVLTD--ESFNELLKLLRYI 250 (549)
T ss_dssp EEEEECSBSTTHHH-HHHHSTTTBS-EEEEESCBC-TTCCCCCCSSCCCCCCCCEEEEESCEEEH--HHHHHHHGGGGGC
T ss_pred eEecccCcccccch-hhHhhccccc-EEEccCCcc-ccccccccchhhhhhcccceeccccccch--hHHHHHHHHhhhh
Confidence 77655443221100 0011122332 333332111 00000000112234455555554331100 00011111
Q ss_pred -------------------------cCCCCCCCCeEEEeecCCCCCCcccCC----CCCCCeeEEEEeCCCCCCCCC-CC
Q 048758 518 -------------------------MLKPHRDVQELTITGYSGTKFPIWLGD----SSFSKLVQLKLEGCGKCTSLP-SV 567 (777)
Q Consensus 518 -------------------------~l~~~~~L~~L~l~~~~~~~~p~~~~~----~~l~~L~~L~L~~~~~~~~l~-~~ 567 (777)
.+..+++|+.|.+.++.+.....+... ..+++|+.|++++|. ++.+| .+
T Consensus 251 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~ 329 (549)
T 2z81_A 251 LELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF 329 (549)
T ss_dssp TTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH
T ss_pred ccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHH
Confidence 223344555555555543322111100 014578888888876 45666 33
Q ss_pred -CCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--Ccc
Q 048758 568 -GQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QLL 644 (777)
Q Consensus 568 -~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~ 644 (777)
+.+++|++|++++|.....++... .....+++|+.|+++++.- ..+.. .+.....+++|++|++++|. .+|
T Consensus 330 ~~~l~~L~~L~Ls~N~l~~~~~~~~---~~~~~l~~L~~L~Ls~N~l-~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~lp 403 (549)
T 2z81_A 330 SQHLKSLEFLDLSENLMVEEYLKNS---ACKGAWPSLQTLVLSQNHL-RSMQK--TGEILLTLKNLTSLDISRNTFHPMP 403 (549)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHH---TCTTSSTTCCEEECTTSCC-CCHHH--HHHHGGGCTTCCEEECTTCCCCCCC
T ss_pred HhcCccccEEEccCCccccccccch---hhhhccccCcEEEccCCcc-ccccc--chhhhhcCCCCCEEECCCCCCccCC
Confidence 468899999999886443222110 0112389999999998742 11100 00112457899999999994 457
Q ss_pred cccCCCCCccEEEEcCCCCcccC--CCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCC
Q 048758 645 VTIQCLPALSELQIDGCKRVVFS--SPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQP 722 (777)
Q Consensus 645 ~~~~~l~~L~~L~l~~~~~l~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 722 (777)
..+..+++|++|++++|..-.+. ..+.|+.|++++|.... .+..+++|++|++++| .++.+|...
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~-----~~~~l~~L~~L~Ls~N-~l~~ip~~~------- 470 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRN-KLKTLPDAS------- 470 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC-----CCCCCTTCCEEECCSS-CCSSCCCGG-------
T ss_pred hhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhh-----hcccCChhcEEECCCC-ccCcCCCcc-------
Confidence 77788899999999999844332 23789999999986432 2357899999999996 788887532
Q ss_pred CcCCcccEEeeecCCCCCCch-hhcCCCCCccEEEecCCCCCcccc
Q 048758 723 ELPCRLQFLELRNCEGLTRLP-QALLTLSSLTEMRIYGCTSLVSFP 767 (777)
Q Consensus 723 ~l~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp 767 (777)
..++|++|++++| .++.+| ..+..+++|+.|++++|+.....|
T Consensus 471 -~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 471 -LFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -GCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -cCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 1279999999996 566554 568899999999999998766554
No 18
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=1.2e-25 Score=259.54 Aligned_cols=246 Identities=15% Similarity=0.058 Sum_probs=155.8
Q ss_pred CCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-cCccccCcCccCeeeccCCcccccch-hhhcc
Q 048758 313 QHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEIGNLKHLRCLNLSRTRIQILPE-SINSL 390 (777)
Q Consensus 313 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L 390 (777)
++++.|. ++.+.+. ...+..|.++++|++|+|++| .+.. .|..++++++|++|++++|.++.+|. .++++
T Consensus 25 ~~l~~L~------Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 25 TNITVLN------LTHNQLR-RLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp TTCSEEE------CCSSCCC-CCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEE------CCCCCCC-CcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 5677773 3334332 233445889999999999998 5555 57778999999999999999999987 59999
Q ss_pred ccCcEEeeCCCcCccccc-hhccccCcccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCcccc--ccccccC
Q 048758 391 YNLHTILLEDCWKLKKLC-KDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQL--KSLAHLQ 467 (777)
Q Consensus 391 ~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l--~~L~~L~ 467 (777)
++|++|++++| .+..+| ..++++++|++|++++|......|..++++++|++|++..+...... ...+ ..+..|+
T Consensus 97 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 97 TNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK-SEELDIFANSSLK 174 (680)
T ss_dssp TTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC-HHHHGGGTTCEES
T ss_pred CCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC-HHHhhcccccccc
Confidence 99999999999 666666 56899999999999999844445566889999999876554322211 0111 1112232
Q ss_pred CcEEEccccccCCcccchhhccCccccccc---------------------------ceEeeccCCCccchHHHhcccCC
Q 048758 468 GRLKISKLENVKDVGDASEAQLNNKVNLEA---------------------------LILEWSARSERCEFETQVLSMLK 520 (777)
Q Consensus 468 ~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~---------------------------L~l~~~~~~~~~~~~~~~~~~l~ 520 (777)
.+.+... ......+..+..+.+|+. |.++.+.. .......+.
T Consensus 175 -~L~L~~n----~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l------~~~~~~~~~ 243 (680)
T 1ziw_A 175 -KLELSSN----QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL------STTSNTTFL 243 (680)
T ss_dssp -EEECTTC----CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC------CEECTTTTG
T ss_pred -EEECCCC----cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc------cccChhHhh
Confidence 3333221 112222333344444444 44432211 001112222
Q ss_pred CC--CCCCeEEEeecCCCCCC-cccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeecCC
Q 048758 521 PH--RDVQELTITGYSGTKFP-IWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLISGM 581 (777)
Q Consensus 521 ~~--~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~ 581 (777)
.+ ++|+.|++++|.+..++ .++. .+++|+.|++++|......| .++.+++|++|++++|
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCEEECCCCCcCccCccccc--CcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 23 34888888888776554 3343 57888888888876544444 5666777777777654
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=3.2e-26 Score=257.54 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=97.7
Q ss_pred CCCCceeeccCccchhhhhccccCCCC----CCCCCccEEEEecCCCc------ccccCCCCCccEEEEcCCCCcc----
Q 048758 600 FPSLEALSFSDMTEWEEWIPCGAGTLP----RRLLLLETLDITSCDQL------LVTIQCLPALSELQIDGCKRVV---- 665 (777)
Q Consensus 600 ~~~L~~L~l~~~~~l~~~~~~~~~~~~----~~l~~L~~L~l~~c~~l------~~~~~~l~~L~~L~l~~~~~l~---- 665 (777)
+++|++|+++++. + ..+| ..+++|++|++++|..- +..+..+++|++|++++|..-.
T Consensus 309 ~~~L~~L~l~~n~-l--------~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 379 (549)
T 2z81_A 309 LEKVKRITVENSK-V--------FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379 (549)
T ss_dssp STTCCEEEEESSC-C--------CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH
T ss_pred cccceEEEeccCc-c--------ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc
Confidence 4567777777653 1 1233 24789999999999743 2236788999999999997532
Q ss_pred ---cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccc-----------cccCCCCCcCCcccEE
Q 048758 666 ---FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEE-----------EHDQQQPELPCRLQFL 731 (777)
Q Consensus 666 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-----------~~~~~~~~l~~~L~~L 731 (777)
+..++.|+.|++++|... ..+ ..+..+++|++|++++| .+..++... ..+++...-.++|++|
T Consensus 380 ~~~~~~l~~L~~L~Ls~N~l~-~lp-~~~~~~~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L 456 (549)
T 2z81_A 380 GEILLTLKNLTSLDISRNTFH-PMP-DSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456 (549)
T ss_dssp HHHGGGCTTCCEEECTTCCCC-CCC-SCCCCCTTCCEEECTTS-CCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEE
T ss_pred hhhhhcCCCCCEEECCCCCCc-cCC-hhhcccccccEEECCCC-CcccccchhcCCceEEECCCCChhhhcccCChhcEE
Confidence 456789999999998543 443 34567899999999997 465554321 0111111112566666
Q ss_pred eeecCCCCCCchhhcCCCCCccEEEecCCCCCccccC
Q 048758 732 ELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVSFPE 768 (777)
Q Consensus 732 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp~ 768 (777)
++++| +++.+|. ...+++|++|++++| .++.+|.
T Consensus 457 ~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~ 490 (549)
T 2z81_A 457 YISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPD 490 (549)
T ss_dssp ECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCT
T ss_pred ECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCH
Confidence 66663 5566665 345667777777665 4444443
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=6e-26 Score=253.35 Aligned_cols=413 Identities=14% Similarity=0.074 Sum_probs=272.0
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCcccc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIG 365 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~ 365 (777)
....++.+.+..+...... ...+..+++|+.|.. +.+.+. ...+..|.++++|++|+|++| .+..+|..
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L------s~n~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 87 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELW-TSDILSLSKLRILII------SHNRIQ-YLDISVFKFNQELEYLDLSHN-KLVKISCH-- 87 (520)
T ss_dssp CCTTCSEEECCSSCCCCCC-HHHHTTCTTCCEEEC------CSSCCC-EEEGGGGTTCTTCCEEECCSS-CCCEEECC--
T ss_pred ccccccEEECCCCcccccC-hhhccccccccEEec------CCCccC-CcChHHhhcccCCCEEecCCC-ceeecCcc--
Confidence 3478888988887655432 345778999999944 444442 234556899999999999999 78889876
Q ss_pred CcCccCeeeccCCcccc--cchhhhccccCcEEeeCCCcCccccchhccccCcc--cEEecCCccc--ccccCcccccc-
Q 048758 366 NLKHLRCLNLSRTRIQI--LPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKL--RHLKNSNVHS--LEEMPKGFGKL- 438 (777)
Q Consensus 366 ~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L--~~L~l~~~~~--~~~~p~~~~~l- 438 (777)
.+++|++|++++|.++. +|..++++++|++|++++| .+.. ..+..+++| +.|++++|.. ....|..+..+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999985 5789999999999999999 5554 347778888 9999999884 34455555543
Q ss_pred -------------------------cCCcccCcEEecCCC-----CCCccccccccccCCcEEEccccccCCcccchhhc
Q 048758 439 -------------------------TSLLTLGRFVVGKDS-----GSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQ 488 (777)
Q Consensus 439 -------------------------~~L~~L~~~~~~~~~-----~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 488 (777)
++|+.|++..+.... ...+..+..+..|+ .+.+................
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS-NLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC-EEEEEEEEEEHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh-hccccccccCHHHHHHHHHH
Confidence 344444433321000 00011222222222 22222211000000000000
Q ss_pred cCcccccccceEeeccCCCccchHHHhcccC-----CCCCCCCeEEEeecCCCCCC-cccCCC-CCCCeeEEEEeCCCCC
Q 048758 489 LNNKVNLEALILEWSARSERCEFETQVLSML-----KPHRDVQELTITGYSGTKFP-IWLGDS-SFSKLVQLKLEGCGKC 561 (777)
Q Consensus 489 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~p-~~~~~~-~l~~L~~L~L~~~~~~ 561 (777)
...++|+.|+++.+. .....+..+ ..++.|+.+++.++.+ .+| .++... .-.+|+.|++++|..
T Consensus 244 -~~~~~L~~L~l~~n~------l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l- 314 (520)
T 2z7x_B 244 -VWHTTVWYFSISNVK------LQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRM- 314 (520)
T ss_dssp -HHTSSCSEEEEEEEE------EESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCC-
T ss_pred -hhhCcccEEEeeccc------ccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcc-
Confidence 012467777776542 111233344 6788899999999988 777 333210 125799999999974
Q ss_pred CCCCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchh--hhhccccCCCCCCCCCccEEEEec
Q 048758 562 TSLPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWE--EWIPCGAGTLPRRLLLLETLDITS 639 (777)
Q Consensus 562 ~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~l~~L~~L~l~~ 639 (777)
..++..+.+++|++|++++|......+..+. .+++|+.|+++++.-.. .+.. ....+++|++|++++
T Consensus 315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~L~~N~l~~l~~~~~-----~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCG------HLTELETLILQMNQLKELSKIAE-----MTTQMKSLQQLDISQ 383 (520)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCC------CCSSCCEEECCSSCCCBHHHHHH-----HHTTCTTCCEEECCS
T ss_pred ccccchhhCCcccEEEeECCccChhhhhhhc------cCCCCCEEEccCCccCccccchH-----HHhhCCCCCEEECCC
Confidence 3344447899999999999864433333332 38999999999875221 1100 114588999999999
Q ss_pred CCC---ccc-ccCCCCCccEEEEcCCCCcc--cCCC-CCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcccc
Q 048758 640 CDQ---LLV-TIQCLPALSELQIDGCKRVV--FSSP-HLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLV 712 (777)
Q Consensus 640 c~~---l~~-~~~~l~~L~~L~l~~~~~l~--~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~ 712 (777)
|.- +|. .+..+++|++|++++|.... ...+ +.|+.|++++|... ..+...+ .+++|++|++++| .++.+|
T Consensus 384 N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N-~l~~l~ 460 (520)
T 2z7x_B 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASN-QLKSVP 460 (520)
T ss_dssp SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSS-CCCCCC
T ss_pred CcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCC-cCCccC
Confidence 963 454 37788999999999997432 2222 79999999998654 5555555 8899999999996 788887
Q ss_pred ccccccCCCCCcCCcccEEeeecCCCCCCc
Q 048758 713 TEEEHDQQQPELPCRLQFLELRNCEGLTRL 742 (777)
Q Consensus 713 ~~~~~~~~~~~l~~~L~~L~l~~c~~l~~l 742 (777)
... +..+ ++|++|++++|+-....
T Consensus 461 ~~~-----~~~l-~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 461 DGI-----FDRL-TSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTT-----TTTC-TTCCEEECCSSCBCCCH
T ss_pred HHH-----hccC-CcccEEECcCCCCcccC
Confidence 651 2334 79999999997655443
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=262.75 Aligned_cols=432 Identities=16% Similarity=0.125 Sum_probs=275.0
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-cCcc-
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNE- 363 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~- 363 (777)
....++.+.+..+..........+.++++|+.|.+ +.+.+. ...+..|.++++|++|+|++| .+.. +|..
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L------s~N~l~-~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 117 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL------GSSKIY-FLHPDAFQGLFHLFELRLYFC-GLSDAVLKDG 117 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC------TTCCCC-EECTTSSCSCSSCCCEECTTC-CCSSCCSTTC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC------CCCcCc-ccCHhHccCCcccCEeeCcCC-CCCcccccCc
Confidence 45677888887764333322456788999999944 334432 234566899999999999999 5554 5655
Q ss_pred -ccCcCccCeeeccCCccccc--chhhhccccCcEEeeCCCcCccccchhcccc--CcccEEecCCcccccccCcccccc
Q 048758 364 -IGNLKHLRCLNLSRTRIQIL--PESINSLYNLHTILLEDCWKLKKLCKDMGNL--TKLRHLKNSNVHSLEEMPKGFGKL 438 (777)
Q Consensus 364 -i~~l~~L~~L~L~~~~i~~l--p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L--~~L~~L~l~~~~~~~~~p~~~~~l 438 (777)
++++++|++|++++|.+..+ +..++++++|++|++++|......|..+..+ ++|+.|++++|......|..++.+
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~ 197 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSS
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhc
Confidence 89999999999999999865 3578999999999999994444456667776 889999999888555566666555
Q ss_pred cC------CcccCcEEecCCC--CCCccc---------------------------------cccc--cccCCcEEEccc
Q 048758 439 TS------LLTLGRFVVGKDS--GSGLRQ---------------------------------LKSL--AHLQGRLKISKL 475 (777)
Q Consensus 439 ~~------L~~L~~~~~~~~~--~~~~~~---------------------------------l~~L--~~L~~~l~i~~l 475 (777)
.+ |+.|++..+.... ...+.. +..+ ..+. .+.+..
T Consensus 198 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~-~L~Ls~- 275 (844)
T 3j0a_A 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR-HLDLSH- 275 (844)
T ss_dssp SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC-EEECTT-
T ss_pred CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc-EEECCC-
Confidence 54 6666654432111 000000 0000 1111 222211
Q ss_pred cccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCC-CcccCCCCCCCeeEEE
Q 048758 476 ENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKF-PIWLGDSSFSKLVQLK 554 (777)
Q Consensus 476 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~ 554 (777)
+......+..+..+++|+.|+++.+.. .......+..+++|+.|++++|.+..+ |..+. .+++|+.|+
T Consensus 276 ---n~l~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~ 344 (844)
T 3j0a_A 276 ---GFVFSLNSRVFETLKDLKVLNLAYNKI------NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY--GLPKVAYID 344 (844)
T ss_dssp ---CCCCEECSCCSSSCCCCCEEEEESCCC------CEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS--SCTTCCEEE
T ss_pred ---CcccccChhhhhcCCCCCEEECCCCcC------CCCChHHhcCCCCCCEEECCCCCCCccCHHHhc--CCCCCCEEE
Confidence 122334455678889999999986632 222334677889999999999998766 44455 689999999
Q ss_pred EeCCCCCCCCC--CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhcc------------
Q 048758 555 LEGCGKCTSLP--SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPC------------ 620 (777)
Q Consensus 555 L~~~~~~~~l~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~------------ 620 (777)
+++|.. ..++ .++.+++|++|++++|.. +.++ .+++|+.|.++++.-. .+...
T Consensus 345 L~~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~----------~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 345 LQKNHI-AIIQDQTFKFLEKLQTLDLRDNAL-TTIH----------FIPSIPDIFLSGNKLV-TLPKINLTANLIHLSEN 411 (844)
T ss_dssp CCSCCC-CCCCSSCSCSCCCCCEEEEETCCS-CCCS----------SCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSC
T ss_pred CCCCCC-CccChhhhcCCCCCCEEECCCCCC-Cccc----------CCCCcchhccCCCCcc-cccccccccceeecccC
Confidence 999964 4444 588899999999998753 2221 1667777777665311 10000
Q ss_pred ccCCC-----CCCCCCccEEEEecCCCc----ccccCCCCCccEEEEcCCCCc----------ccCCCCCccEEEEeecC
Q 048758 621 GAGTL-----PRRLLLLETLDITSCDQL----LVTIQCLPALSELQIDGCKRV----------VFSSPHLVHAVNVREQA 681 (777)
Q Consensus 621 ~~~~~-----~~~l~~L~~L~l~~c~~l----~~~~~~l~~L~~L~l~~~~~l----------~~~~~~~L~~L~l~~~~ 681 (777)
....+ ...+++|+.|++++|.-- ...+..+++|++|++++|..- .+..++.|+.|++++|
T Consensus 412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N- 490 (844)
T 3j0a_A 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN- 490 (844)
T ss_dssp CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH-
T ss_pred ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC-
Confidence 00000 014667777777776421 112344677777777776532 1334567777777776
Q ss_pred ccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCC
Q 048758 682 YFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCT 761 (777)
Q Consensus 682 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 761 (777)
.++..+...+..+++|++|+++++ .++.++... ++++|++|++++| .++.++.. .+++|+.|+++++|
T Consensus 491 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~--------~~~~L~~L~Ls~N-~l~~~~~~--~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 491 YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHND--------LPANLEILDISRN-QLLAPNPD--VFVSLSVLDITHNK 558 (844)
T ss_dssp HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCC--------CCSCCCEEEEEEE-CCCCCCSC--CCSSCCEEEEEEEC
T ss_pred cccccChhHccchhhhheeECCCC-CCCccChhh--------hhccccEEECCCC-cCCCCChh--HhCCcCEEEecCCC
Confidence 345566666777788888888875 666665432 3367888888884 44444321 34578888888766
Q ss_pred CCc
Q 048758 762 SLV 764 (777)
Q Consensus 762 ~l~ 764 (777)
...
T Consensus 559 ~~C 561 (844)
T 3j0a_A 559 FIC 561 (844)
T ss_dssp CCC
T ss_pred ccc
Confidence 554
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.4e-24 Score=244.20 Aligned_cols=405 Identities=16% Similarity=0.114 Sum_probs=222.9
Q ss_pred CCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccchhhhccc
Q 048758 313 QHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPESINSLY 391 (777)
Q Consensus 313 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 391 (777)
++++.|. ++.+.+. ...+..|.++++|++|+|++| .+..+ |..|+++++|++|++++|.++.+|.. .++
T Consensus 52 ~~L~~L~------Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 52 PRTKALS------LSQNSIS-ELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp TTCCEEE------CCSSCCC-CCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCcCEEE------CCCCCcc-ccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 6677773 3334332 233345788888999999888 56665 67788888999999999988888877 788
Q ss_pred cCcEEeeCCCcCccccc--hhccccCcccEEecCCcccccccCcccccccCC--cccCcEEecCC-CCCCcccccccccc
Q 048758 392 NLHTILLEDCWKLKKLC--KDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSL--LTLGRFVVGKD-SGSGLRQLKSLAHL 466 (777)
Q Consensus 392 ~L~~L~l~~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~L~~~~~~~~-~~~~~~~l~~L~~L 466 (777)
+|++|++++| .+..+| ..++++++|++|++++|. +.. ..+..+++| ++|++..+... .......+..+..
T Consensus 122 ~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~- 196 (562)
T 3a79_B 122 SLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT- 196 (562)
T ss_dssp TCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-
T ss_pred cCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccccccCc-
Confidence 8999999888 566543 678888899999988887 443 235555555 77766655331 1111122222210
Q ss_pred CCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCC-----------------------
Q 048758 467 QGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHR----------------------- 523 (777)
Q Consensus 467 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~----------------------- 523 (777)
. .+.+ .+.............+..+++|+.++++.+.. .+.........+...+
T Consensus 197 ~-~l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~--~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 197 T-VLHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE--NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp E-EEEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCST--THHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred c-eEEE-EecCccchhhhhhhcccccceEEEeccccccc--ccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 0 1111 11110111111222344556666666664320 0111111112222223
Q ss_pred ----CCCeEEEeecCCC-CCCcccCC---CCCCCeeEEEEeCCCCCCCCC--CCCC---CCCcceeeecCCCCceEeCcc
Q 048758 524 ----DVQELTITGYSGT-KFPIWLGD---SSFSKLVQLKLEGCGKCTSLP--SVGQ---LPFLKELLISGMDGVKIVGLE 590 (777)
Q Consensus 524 ----~L~~L~l~~~~~~-~~p~~~~~---~~l~~L~~L~L~~~~~~~~l~--~~~~---l~~L~~L~L~~~~~l~~~~~~ 590 (777)
+|++|++++|.+. .+|..+.. ..+++|+.+++..+.. .+| .+.. -++|++|++++|..... .
T Consensus 273 ~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~---~ 347 (562)
T 3a79_B 273 FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHM---V 347 (562)
T ss_dssp HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCC---C
T ss_pred hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcccc---c
Confidence 5666666666553 45544321 1233344444443332 222 0111 13466677766542211 1
Q ss_pred cccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC-----cccccCCCCCccEEEEcCCCCcc
Q 048758 591 FYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ-----LLVTIQCLPALSELQIDGCKRVV 665 (777)
Q Consensus 591 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~-----l~~~~~~l~~L~~L~l~~~~~l~ 665 (777)
+. ..+++|+.|+++++.--.. . ......+++|++|++++|.- ++..+..+++|++|++++|....
T Consensus 348 ~~-----~~l~~L~~L~l~~n~l~~~-~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 348 CP-----PSPSSFTFLNFTQNVFTDS-V----FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp CC-----SSCCCCCEEECCSSCCCTT-T----TTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred Cc-----cCCCCceEEECCCCccccc-h----hhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 10 1267777777777642111 0 11113466777777777741 13446677777777777776433
Q ss_pred ------cCCCCCccEEEEeecCccccccccCCCCC-CCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCC
Q 048758 666 ------FSSPHLVHAVNVREQAYFWRSETRLPQDI-RSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEG 738 (777)
Q Consensus 666 ------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~ 738 (777)
+..++.|+.|++++|......+ ..+ ++|++|++++| .++.+|.... .+ ++|++|++++ +.
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N-~l~~ip~~~~------~l-~~L~~L~L~~-N~ 484 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNN-RIMSIPKDVT------HL-QALQELNVAS-NQ 484 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSS-CCCCCCTTTT------SS-CCCSEEECCS-SC
T ss_pred ccChhhhcCcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCC-cCcccChhhc------CC-CCCCEEECCC-CC
Confidence 3345677777777765433222 223 57777777775 5666665441 22 5777777777 45
Q ss_pred CCCchhh-cCCCCCccEEEecCCCCCc
Q 048758 739 LTRLPQA-LLTLSSLTEMRIYGCTSLV 764 (777)
Q Consensus 739 l~~lp~~-~~~l~~L~~L~l~~c~~l~ 764 (777)
++.+|.. +..+++|+.|++++++.-.
T Consensus 485 l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 485 LKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 6677765 6677777777777765443
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.1e-24 Score=238.89 Aligned_cols=322 Identities=19% Similarity=0.237 Sum_probs=165.4
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
+..+++|++|++++| .+..+|. ++++++|++|++++|.+..+++ ++++++|++|++++| .+..+|. +.++++|++
T Consensus 64 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~ 138 (466)
T 1o6v_A 64 VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNR 138 (466)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSE
T ss_pred hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCE
Confidence 344555555555555 4444444 5555555555555555555544 555555555555555 4444443 555555555
Q ss_pred EecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccce
Q 048758 420 LKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALI 499 (777)
Q Consensus 420 L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 499 (777)
|++++|. +..++ .++.+++|+.|.+.. .. .. ...+..+++|+.|+
T Consensus 139 L~l~~n~-l~~~~-~~~~l~~L~~L~l~~----------------------------~~---~~--~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 139 LELSSNT-ISDIS-ALSGLTSLQQLSFGN----------------------------QV---TD--LKPLANLTTLERLD 183 (466)
T ss_dssp EEEEEEE-ECCCG-GGTTCTTCSEEEEEE----------------------------SC---CC--CGGGTTCTTCCEEE
T ss_pred EECCCCc-cCCCh-hhccCCcccEeecCC----------------------------cc---cC--chhhccCCCCCEEE
Confidence 5555554 33333 244444444442210 00 00 01144455666666
Q ss_pred EeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeec
Q 048758 500 LEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLIS 579 (777)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~ 579 (777)
++.+.... ...+..+++|+.|++++|.+...+. +. .+++|+.|++++|. ++.++.+..+++|++|+++
T Consensus 184 l~~n~l~~--------~~~l~~l~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 184 ISSNKVSD--------ISVLAKLTNLESLIATNNQISDITP-LG--ILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLA 251 (466)
T ss_dssp CCSSCCCC--------CGGGGGCTTCSEEECCSSCCCCCGG-GG--GCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECC
T ss_pred CcCCcCCC--------ChhhccCCCCCEEEecCCccccccc-cc--ccCCCCEEECCCCC-cccchhhhcCCCCCEEECC
Confidence 65443111 1234455667777777766655544 22 36667777777665 3345556666667777776
Q ss_pred CCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCc-ccccCCCCCccEEEE
Q 048758 580 GMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQL-LVTIQCLPALSELQI 658 (777)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~l~~L~~L~l 658 (777)
+|......+ + ..+++|+.|+++++.- ..+.+ ...+++|+.|++++|.-- ...+..+++|++|++
T Consensus 252 ~n~l~~~~~--~------~~l~~L~~L~l~~n~l-~~~~~------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L 316 (466)
T 1o6v_A 252 NNQISNLAP--L------SGLTKLTELKLGANQI-SNISP------LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 316 (466)
T ss_dssp SSCCCCCGG--G------TTCTTCSEEECCSSCC-CCCGG------GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEEC
T ss_pred CCccccchh--h------hcCCCCCEEECCCCcc-Ccccc------ccCCCccCeEEcCCCcccCchhhcCCCCCCEEEC
Confidence 654222111 1 1256666666665531 11000 123555666666555311 111445555555555
Q ss_pred cCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCC
Q 048758 659 DGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEG 738 (777)
Q Consensus 659 ~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~ 738 (777)
++|. .....+ +..+++|++|++++| .+..++. +..+ ++|++|++++| .
T Consensus 317 ~~n~-------------------l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~-------l~~l-~~L~~L~l~~n-~ 364 (466)
T 1o6v_A 317 YFNN-------------------ISDISP---VSSLTKLQRLFFYNN-KVSDVSS-------LANL-TNINWLSAGHN-Q 364 (466)
T ss_dssp CSSC-------------------CSCCGG---GGGCTTCCEEECCSS-CCCCCGG-------GTTC-TTCCEEECCSS-C
T ss_pred cCCc-------------------CCCchh---hccCccCCEeECCCC-ccCCchh-------hccC-CCCCEEeCCCC-c
Confidence 5553 222111 345677777777776 4554421 1223 67777777775 3
Q ss_pred CCCchhhcCCCCCccEEEecCCC
Q 048758 739 LTRLPQALLTLSSLTEMRIYGCT 761 (777)
Q Consensus 739 l~~lp~~~~~l~~L~~L~l~~c~ 761 (777)
+..++. +..+++|++|++++|+
T Consensus 365 l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 365 ISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp CCBCGG-GTTCTTCCEEECCCEE
T ss_pred cCccch-hhcCCCCCEEeccCCc
Confidence 444433 6677777777777663
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=8.4e-25 Score=246.06 Aligned_cols=415 Identities=13% Similarity=0.072 Sum_probs=255.7
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCcccc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIG 365 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~ 365 (777)
....++.+.+..+...... ...+..+++|+.|.+ +.|.+. ...+..|.++++|++|+|++| .+..+|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~L------s~N~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELR-MPDISFLSELRVLRL------SHNRIR-SLDFHVFLFNQDLEYLDVSHN-RLQNISCC-- 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCCC-GGGTTTCTTCCEEEC------CSCCCC-EECTTTTTTCTTCCEEECTTS-CCCEECSC--
T ss_pred CCCCcCEEECCCCCccccC-hhhhccCCCccEEEC------CCCCCC-cCCHHHhCCCCCCCEEECCCC-cCCccCcc--
Confidence 3478888988887655433 346778999999944 444432 234556889999999999999 78899987
Q ss_pred CcCccCeeeccCCcccccc--hhhhccccCcEEeeCCCcCccccchhccccCcc--cEEecCCccc--ccccCccccccc
Q 048758 366 NLKHLRCLNLSRTRIQILP--ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKL--RHLKNSNVHS--LEEMPKGFGKLT 439 (777)
Q Consensus 366 ~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L--~~L~l~~~~~--~~~~p~~~~~l~ 439 (777)
.+++|++|++++|.++.+| ..++++++|++|++++| .+.. ..+..+++| ++|++++|.. ....|..+..+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-cccc--CchhhhhhceeeEEEeecccccccccCcccccccC
Confidence 8999999999999999764 78999999999999998 5544 235566666 9999999884 344455555443
Q ss_pred CCcccCcEEecCCCC-----CCccccccc-------------------------cccCCcEEEccccccCCcccchhhcc
Q 048758 440 SLLTLGRFVVGKDSG-----SGLRQLKSL-------------------------AHLQGRLKISKLENVKDVGDASEAQL 489 (777)
Q Consensus 440 ~L~~L~~~~~~~~~~-----~~~~~l~~L-------------------------~~L~~~l~i~~l~~~~~~~~~~~~~l 489 (777)
. +.+.+........ ..+..+.++ ..+. .+.+.............+..+
T Consensus 196 ~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~-~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 196 T-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL-NVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp E-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE-EEEEEEEEECHHHHHHHHHHH
T ss_pred c-ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce-EEEecCCcCcHHHHHHHHHhh
Confidence 1 1221111100000 000111111 1111 111111110000000001111
Q ss_pred CcccccccceEeeccCCCccchHHHhcccC-----CCCCCCCeEEEeecCCCCCCc-ccCC-CCCCCeeEEEEeCCCCCC
Q 048758 490 NNKVNLEALILEWSARSERCEFETQVLSML-----KPHRDVQELTITGYSGTKFPI-WLGD-SSFSKLVQLKLEGCGKCT 562 (777)
Q Consensus 490 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~p~-~~~~-~~l~~L~~L~L~~~~~~~ 562 (777)
...+|+.|+++.+.. ....+..+ ..++.|+.+++..+.+ .+|. ++.. ....+|+.|++++|.. .
T Consensus 274 -~~~~L~~L~l~~n~l------~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~-~ 344 (562)
T 3a79_B 274 -WPRPVEYLNIYNLTI------TERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPF-I 344 (562)
T ss_dssp -TTSSEEEEEEEEEEE------CSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCC-C
T ss_pred -hcccccEEEEeccEe------eccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCc-c
Confidence 123777777775531 11122222 3333444444444444 4442 2110 0125799999999974 3
Q ss_pred CCCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC
Q 048758 563 SLPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ 642 (777)
Q Consensus 563 ~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 642 (777)
.++..+.+++|++|++++|......+..+. .+++|+.|+++++. +..+.. .......+++|++|++++|.-
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~L~~N~-l~~~~~--~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCS------TLKRLQTLILQRNG-LKNFFK--VALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCCTTTTTTCC------SCSSCCEEECCSSC-CCBTTH--HHHTTTTCTTCCEEECTTSCC
T ss_pred cccCccCCCCceEEECCCCccccchhhhhc------ccCCCCEEECCCCC-cCCccc--chhhhcCCCCCCEEECCCCcC
Confidence 333347889999999999864433333332 38999999999874 221100 001124678999999999963
Q ss_pred ---ccc-ccCCCCCccEEEEcCCCCcc--cCCC-CCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccc
Q 048758 643 ---LLV-TIQCLPALSELQIDGCKRVV--FSSP-HLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEE 715 (777)
Q Consensus 643 ---l~~-~~~~l~~L~~L~l~~~~~l~--~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 715 (777)
++. .+..+++|++|++++|.... ...+ +.|+.|++++|. ++..+...+ .+++|++|+++++ .++.+|...
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~-~l~~L~~L~L~~N-~l~~l~~~~ 492 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVT-HLQALQELNVASN-QLKSVPDGV 492 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTT-SSCCCSEEECCSS-CCCCCCTTS
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhc-CCCCCCEEECCCC-CCCCCCHHH
Confidence 443 46788999999999997432 2333 699999999984 456666665 8899999999995 788887651
Q ss_pred cccCCCCCcCCcccEEeeecCCCCCCch
Q 048758 716 EHDQQQPELPCRLQFLELRNCEGLTRLP 743 (777)
Q Consensus 716 ~~~~~~~~l~~~L~~L~l~~c~~l~~lp 743 (777)
+..+ ++|++|++++|+--...|
T Consensus 493 -----~~~l-~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 493 -----FDRL-TSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp -----TTTC-TTCCCEECCSCCBCCCHH
T ss_pred -----HhcC-CCCCEEEecCCCcCCCcc
Confidence 2333 789999999976554443
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=8e-25 Score=237.50 Aligned_cols=365 Identities=19% Similarity=0.161 Sum_probs=201.0
Q ss_pred HHHHHccCCceeEEeecCccCccccCccccCcCcc-------------CeeeccCCcccccchhhhccccCcEEeeCCCc
Q 048758 336 LQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHL-------------RCLNLSRTRIQILPESINSLYNLHTILLEDCW 402 (777)
Q Consensus 336 ~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L-------------~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~ 402 (777)
+|..++++++|++|++++|.....+|..++++.+| ++|++++|.++.+|.. .++|++|++++|
T Consensus 26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n- 101 (454)
T 1jl5_A 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL---PPHLESLVASCN- 101 (454)
T ss_dssp --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC---CTTCSEEECCSS-
T ss_pred CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC---cCCCCEEEccCC-
Confidence 44445666666666666553333456656555543 5666666666555542 245666666665
Q ss_pred CccccchhccccCcccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcc
Q 048758 403 KLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVG 482 (777)
Q Consensus 403 ~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~ 482 (777)
.+..+|.. +++|++|++++|. +..+|... ++|++|++..+.... +..+..++.|+ .+.+..-. ...
T Consensus 102 ~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~L~~n~l~~---lp~~~~l~~L~-~L~l~~N~-l~~-- 167 (454)
T 1jl5_A 102 SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLGVSNNQLEK---LPELQNSSFLK-IIDVDNNS-LKK-- 167 (454)
T ss_dssp CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEECCSSCCSS---CCCCTTCTTCC-EEECCSSC-CSC--
T ss_pred cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEECcCCCCCC---CcccCCCCCCC-EEECCCCc-Ccc--
Confidence 44445532 2556666666554 44443211 344444443332221 11233333332 22222210 000
Q ss_pred cchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCC
Q 048758 483 DASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCT 562 (777)
Q Consensus 483 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 562 (777)
.+. ...+|+.|+++.+.... .+.++.+++|+.|++++|.+..+|.. .++|+.|++++|.. +
T Consensus 168 --lp~---~~~~L~~L~L~~n~l~~--------l~~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l-~ 228 (454)
T 1jl5_A 168 --LPD---LPPSLEFIAAGNNQLEE--------LPELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNIL-E 228 (454)
T ss_dssp --CCC---CCTTCCEEECCSSCCSS--------CCCCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCC-S
T ss_pred --cCC---CcccccEEECcCCcCCc--------CccccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcC-C
Confidence 111 12377888887653211 23577788899999999888777653 35789999998864 4
Q ss_pred CCCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC
Q 048758 563 SLPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ 642 (777)
Q Consensus 563 ~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 642 (777)
.+|.++.+++|++|++++|. ++.++. .+++|+.|+++++.- ..+|..+++|++|++++|.-
T Consensus 229 ~lp~~~~l~~L~~L~l~~N~-l~~l~~---------~~~~L~~L~l~~N~l---------~~l~~~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 229 ELPELQNLPFLTTIYADNNL-LKTLPD---------LPPSLEALNVRDNYL---------TDLPELPQSLTFLDVSENIF 289 (454)
T ss_dssp SCCCCTTCTTCCEEECCSSC-CSSCCS---------CCTTCCEEECCSSCC---------SCCCCCCTTCCEEECCSSCC
T ss_pred cccccCCCCCCCEEECCCCc-CCcccc---------cccccCEEECCCCcc---------cccCcccCcCCEEECcCCcc
Confidence 77888889999999998874 222221 157899999988741 22445568899999998852
Q ss_pred cccccCCCCCccEEEEcCCCCcccCCC-CCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCC
Q 048758 643 LLVTIQCLPALSELQIDGCKRVVFSSP-HLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQ 721 (777)
Q Consensus 643 l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~ 721 (777)
...-...++|++|++++|....+... +.|+.|++++|... ..+ ..+++|++|++++| .++.+|.
T Consensus 290 -~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~-~lp----~~~~~L~~L~L~~N-~l~~lp~-------- 354 (454)
T 1jl5_A 290 -SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP----ALPPRLERLIASFN-HLAEVPE-------- 354 (454)
T ss_dssp -SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSS-CCSCCCC--------
T ss_pred -CcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccc-ccc----ccCCcCCEEECCCC-ccccccc--------
Confidence 11112236899999999875555444 58999999887543 333 33689999999986 6777754
Q ss_pred CCcCCcccEEeeecCCCCC--CchhhcCCC-------------CCccEEEecCCCCCccccCCCCCCCCC
Q 048758 722 PELPCRLQFLELRNCEGLT--RLPQALLTL-------------SSLTEMRIYGCTSLVSFPEVALPSQLR 776 (777)
Q Consensus 722 ~~l~~~L~~L~l~~c~~l~--~lp~~~~~l-------------~~L~~L~l~~c~~l~~lp~~~~p~~l~ 776 (777)
.+++|++|++++|+... .+|.++..+ ++|+.|++++|+ +..+|. +|++++
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~--iP~sl~ 419 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP-LREFPD--IPESVE 419 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc-CCcccc--chhhHh
Confidence 23789999999965444 577777766 889999999865 444443 455543
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=2.8e-23 Score=238.27 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=91.8
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCc-cc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPN-EI 364 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i 364 (777)
.+..++.+.+..+...... ...+.++++|+.|. ++.|.+. .+.+..|.++++|++|+|++| .+..+|. .|
T Consensus 50 lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L~------Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f 120 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLD------LSRCEIQ-TIEDGAYQSLSHLSTLILTGN-PIQSLALGAF 120 (635)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEE------CTTCCCC-EECTTTTTTCTTCCEEECTTC-CCCEECGGGG
T ss_pred CCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEEE------CCCCcCC-CcChhHhcCCCCCCEEEccCC-cCCCCCHHHh
Confidence 4556677776665543322 23456777777773 3333331 233445777777888888777 5666663 46
Q ss_pred cCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCcc--ccchhccccCcccEEecCCccccccc-CcccccccC
Q 048758 365 GNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLK--KLCKDMGNLTKLRHLKNSNVHSLEEM-PKGFGKLTS 440 (777)
Q Consensus 365 ~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~-p~~~~~l~~ 440 (777)
+++++|++|++++|.++.+|+ .++++++|++|++++| .+. .+|..++++++|++|++++|. +..+ |..+..+.+
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQ 198 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHT
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc-ccccccccccchhh
Confidence 777788888888877777765 3677778888888777 443 345667777788888887776 4443 334555444
Q ss_pred Cc
Q 048758 441 LL 442 (777)
Q Consensus 441 L~ 442 (777)
++
T Consensus 199 l~ 200 (635)
T 4g8a_A 199 MP 200 (635)
T ss_dssp CT
T ss_pred hh
Confidence 44
No 27
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.92 E-value=2.7e-25 Score=248.99 Aligned_cols=199 Identities=20% Similarity=0.320 Sum_probs=161.4
Q ss_pred HHHHHHHHHHHh---CCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHHhhcccCCccccC------C
Q 048758 23 LNSLQVKLKERL---SGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTLK------E 93 (777)
Q Consensus 23 ~~~~~~~l~~~L---~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~~~~~~~~l~------~ 93 (777)
.+.+.+.+++.| .++|+||||||||+. ..|+.+ ++||+||||||++.++..+.....|.++ +
T Consensus 227 leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~ 297 (1221)
T 1vt4_I 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297 (1221)
T ss_dssp HHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSC
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCC
Confidence 355677777766 789999999999985 456554 2789999999999998765555567777 9
Q ss_pred CChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCC-ChhHHHHHHhccccccccCccCch
Q 048758 94 LSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKD-DLNDWEFVLNTNIWDLREDKCDIL 172 (777)
Q Consensus 94 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~-~~~~w~~~~~~~~~~~~~~~~~~~ 172 (777)
|+.+|||+||+... +.. ..+++.++ |+|+||||+++|+.|+.+. ....|+.. ....+.
T Consensus 298 LS~eEA~eLF~~~~-g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~ 356 (1221)
T 1vt4_I 298 LTPDEVKSLLLKYL-DCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLT 356 (1221)
T ss_dssp CCHHHHHHHHHHHH-CCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHH
T ss_pred cCHHHHHHHHHHHc-CCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHH
Confidence 99999999999984 221 11334444 9999999999999999874 56788753 235699
Q ss_pred hhHhhcccCCChhh-HHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHHHHHHHHHHHhhCcccccccCCCC
Q 048758 173 PTLRVSYHFLPPQL-KRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSSKDTS 251 (777)
Q Consensus 173 ~~l~~sy~~L~~~~-k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~~~~~~ 251 (777)
.+|++||+.||++. |.||++||+||+++.|+...++..|+++| ++.+..++++|+++||++... ...
T Consensus 357 aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d~-~~~ 424 (1221)
T 1vt4_I 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQP-KES 424 (1221)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBCS-SSS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEeC-CCC
Confidence 99999999999999 99999999999999999999999998776 134778899999999999853 357
Q ss_pred cEEecHHHHHHH
Q 048758 252 RFVMHDLINDLA 263 (777)
Q Consensus 252 ~~~mhd~i~~~~ 263 (777)
.|.|||++++++
T Consensus 425 rYrMHDLllELr 436 (1221)
T 1vt4_I 425 TISIPSIYLELK 436 (1221)
T ss_dssp EEBCCCHHHHHH
T ss_pred EEEehHHHHHHh
Confidence 899999998855
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=1.3e-24 Score=269.26 Aligned_cols=239 Identities=21% Similarity=0.329 Sum_probs=189.0
Q ss_pred HHHHHHHhhcCCCC---CCCCCHHHHHHHHHHHhCCC--eEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 4 ISKSILNSVAKDQS---NNDDDLNSLQVKLKERLSGK--KFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 4 l~~~il~~l~~~~~---~~~~~~~~~~~~l~~~L~~~--~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
.+++++..+..... ....+.+...+.+++.+.++ |+||||||||+. .+|.. .++||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCCHH
Confidence 35566676664432 13456788999999999877 999999999975 34443 368999999999999
Q ss_pred HHhh-cccCCccccCC-CChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHH
Q 048758 79 VAAT-MRAVSGKTLKE-LSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFV 156 (777)
Q Consensus 79 v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~ 156 (777)
++.. +.....+.+++ |+++||++||...++... +.+.+.+++|+++|+|+||||+++|++|+.++ ..|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9855 45567899996 999999999999985432 23446799999999999999999999998875 467776
Q ss_pred Hhccccccc----c----CccCchhhHhhcccCCChhhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHH
Q 048758 157 LNTNIWDLR----E----DKCDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMED 228 (777)
Q Consensus 157 ~~~~~~~~~----~----~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d 228 (777)
++.+..... . ....+..++.+||+.|+++.|.||++||+||+++.|++..+++.|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 654422111 1 114588999999999999999999999999999999999999999432 35
Q ss_pred HHHHHHHHHhhCcccccccCC-CCcEEecHHHHHHHHHhhccc
Q 048758 229 LGREFVQELHSRSLFQLSSKD-TSRFVMHDLINDLARWAAGEQ 270 (777)
Q Consensus 229 ~~~~~l~~L~~~sLl~~~~~~-~~~~~mhd~i~~~~~~~~~~~ 270 (777)
.+.+++++|+++||++....+ ..+|.||+++|++++....++
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 678899999999999876532 235999999999999886654
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=3.2e-23 Score=225.14 Aligned_cols=205 Identities=19% Similarity=0.145 Sum_probs=95.1
Q ss_pred cCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEe
Q 048758 342 HLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLK 421 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~ 421 (777)
++++|++|++++| .+..+| .++.+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++++++|++|+
T Consensus 40 ~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEE
T ss_pred HcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEE
Confidence 3445555555544 444444 3455555555555555555443 445555555555555 344443 44555555555
Q ss_pred cCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEe
Q 048758 422 NSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILE 501 (777)
Q Consensus 422 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 501 (777)
+++|. +..+| ++.+++|++|++..+..... . +..++.|+ .+.+...... ... .+..+++|+.|+++
T Consensus 113 L~~N~-l~~l~--~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~-~L~l~~n~~~---~~~---~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 113 CDTNK-LTKLD--VSQNPLLTYLNCARNTLTEI-D---VSHNTQLT-ELDCHLNKKI---TKL---DVTPQTQLTTLDCS 178 (457)
T ss_dssp CCSSC-CSCCC--CTTCTTCCEEECTTSCCSCC-C---CTTCTTCC-EEECTTCSCC---CCC---CCTTCTTCCEEECC
T ss_pred CCCCc-CCeec--CCCCCcCCEEECCCCcccee-c---cccCCcCC-EEECCCCCcc---ccc---ccccCCcCCEEECC
Confidence 55554 33333 44444444443322211110 0 11111111 1111111000 000 13445566666665
Q ss_pred eccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCC
Q 048758 502 WSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGM 581 (777)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~ 581 (777)
.+.... . .+..+++|+.|++++|.+..++ +. .+++|+.|++++|.. +.+| ++.+++|++|++++|
T Consensus 179 ~n~l~~--------l-~l~~l~~L~~L~l~~N~l~~~~--l~--~l~~L~~L~Ls~N~l-~~ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 179 FNKITE--------L-DVSQNKLLNRLNCDTNNITKLD--LN--QNIQLTFLDCSSNKL-TEID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp SSCCCC--------C-CCTTCTTCCEEECCSSCCSCCC--CT--TCTTCSEEECCSSCC-SCCC-CTTCTTCSEEECCSS
T ss_pred CCccce--------e-ccccCCCCCEEECcCCcCCeec--cc--cCCCCCEEECcCCcc-cccC-ccccCCCCEEEeeCC
Confidence 442111 1 1455566777777666665543 22 466677777766653 3355 566666777777665
Q ss_pred C
Q 048758 582 D 582 (777)
Q Consensus 582 ~ 582 (777)
.
T Consensus 244 ~ 244 (457)
T 3bz5_A 244 P 244 (457)
T ss_dssp C
T ss_pred c
Confidence 3
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.6e-23 Score=217.96 Aligned_cols=302 Identities=18% Similarity=0.195 Sum_probs=175.5
Q ss_pred ccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEE
Q 048758 341 NHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 420 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L 420 (777)
..+++|++|+++++ .+..+|. ++.+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+.++++|++|
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred hhcccccEEEEeCC-ccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 45677888888877 6777764 7788888888888888887776 778888888888888 666665 47788888888
Q ss_pred ecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceE
Q 048758 421 KNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALIL 500 (777)
Q Consensus 421 ~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 500 (777)
++++|. +..++. +..+++|+.|++..+... .
T Consensus 116 ~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~--------------------------~--------------------- 146 (347)
T 4fmz_A 116 YLNEDN-ISDISP-LANLTKMYSLNLGANHNL--------------------------S--------------------- 146 (347)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEECTTCTTC--------------------------C---------------------
T ss_pred ECcCCc-ccCchh-hccCCceeEEECCCCCCc--------------------------c---------------------
Confidence 888877 555554 555555555532111000 0
Q ss_pred eeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecC
Q 048758 501 EWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISG 580 (777)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~ 580 (777)
....+..+++|+.|++.++....++. +. .+++|+.|++++|. +..++.+..+++|++|++++
T Consensus 147 --------------~~~~~~~l~~L~~L~l~~~~~~~~~~-~~--~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~ 208 (347)
T 4fmz_A 147 --------------DLSPLSNMTGLNYLTVTESKVKDVTP-IA--NLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYV 208 (347)
T ss_dssp --------------CCGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCS
T ss_pred --------------cccchhhCCCCcEEEecCCCcCCchh-hc--cCCCCCEEEccCCc-ccccccccCCCccceeeccc
Confidence 00112233344444444444433333 11 24455555555443 22333344445555555554
Q ss_pred CCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCc-ccccCCCCCccEEEEc
Q 048758 581 MDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQL-LVTIQCLPALSELQID 659 (777)
Q Consensus 581 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~l~~L~~L~l~ 659 (777)
|......+ +. .+++|++|+++++.- ..+. . ...+++|++|++++|.-- ...+..+++|++|+++
T Consensus 209 n~l~~~~~--~~------~~~~L~~L~l~~n~l-~~~~-----~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 209 NQITDITP--VA------NMTRLNSLKIGNNKI-TDLS-----P-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVG 273 (347)
T ss_dssp SCCCCCGG--GG------GCTTCCEEECCSSCC-CCCG-----G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred CCCCCCch--hh------cCCcCCEEEccCCcc-CCCc-----c-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEcc
Confidence 42211111 11 144455555544421 0000 0 123556666666666311 1346677778888887
Q ss_pred CCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCcccc-ccccccCCCCCcCCcccEEeeecCCC
Q 048758 660 GCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLV-TEEEHDQQQPELPCRLQFLELRNCEG 738 (777)
Q Consensus 660 ~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~~~~~~~l~~~L~~L~l~~c~~ 738 (777)
+|..- .. ..+..+++|++|++++|. +...+ ... ..+ ++|++|++++|+
T Consensus 274 ~n~l~--------------------~~--~~~~~l~~L~~L~L~~n~-l~~~~~~~l------~~l-~~L~~L~L~~n~- 322 (347)
T 4fmz_A 274 SNQIS--------------------DI--SVLNNLSQLNSLFLNNNQ-LGNEDMEVI------GGL-TNLTTLFLSQNH- 322 (347)
T ss_dssp SSCCC--------------------CC--GGGGGCTTCSEEECCSSC-CCGGGHHHH------HTC-TTCSEEECCSSS-
T ss_pred CCccC--------------------CC--hhhcCCCCCCEEECcCCc-CCCcChhHh------hcc-ccCCEEEccCCc-
Confidence 77422 11 234567999999999984 54433 222 223 789999999975
Q ss_pred CCCchhhcCCCCCccEEEecCCC
Q 048758 739 LTRLPQALLTLSSLTEMRIYGCT 761 (777)
Q Consensus 739 l~~lp~~~~~l~~L~~L~l~~c~ 761 (777)
++.++. +..+++|++|++++|+
T Consensus 323 l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cccccC-hhhhhccceeehhhhc
Confidence 666655 7889999999999885
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=8.7e-24 Score=229.58 Aligned_cols=290 Identities=16% Similarity=0.128 Sum_probs=166.1
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
+..+++|++|++++| .+..+| ++.+++|++|++++|.++.+| ++++++|++|++++| .+..+| ++++++|++
T Consensus 60 l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~ 131 (457)
T 3bz5_A 60 IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTY 131 (457)
T ss_dssp GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC-cCCeec--CCCCCcCCE
Confidence 566777777777766 566664 667777777777777777664 666777777777777 555554 667777777
Q ss_pred EecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccce
Q 048758 420 LKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALI 499 (777)
Q Consensus 420 L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 499 (777)
|++++|. +..++ ++.+++|++|++..+....... +..++.|+ .+.+... .... . .+..+++|+.|.
T Consensus 132 L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~-~L~ls~n----~l~~-l--~l~~l~~L~~L~ 197 (457)
T 3bz5_A 132 LNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLT-TLDCSFN----KITE-L--DVSQNKLLNRLN 197 (457)
T ss_dssp EECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCC-EEECCSS----CCCC-C--CCTTCTTCCEEE
T ss_pred EECCCCc-cceec--cccCCcCCEEECCCCCcccccc---cccCCcCC-EEECCCC----ccce-e--ccccCCCCCEEE
Confidence 7777766 55543 5666666666544332222112 22233332 3333221 1111 1 156678889998
Q ss_pred EeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeec
Q 048758 500 LEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLIS 579 (777)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~ 579 (777)
++.+.... ..++.+++|+.|++++|.+..+| +. .+++|+.|++++|... .+| .+.+++|+.|+++
T Consensus 198 l~~N~l~~---------~~l~~l~~L~~L~Ls~N~l~~ip--~~--~l~~L~~L~l~~N~l~-~~~-~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 198 CDTNNITK---------LDLNQNIQLTFLDCSSNKLTEID--VT--PLTQLTYFDCSVNPLT-ELD-VSTLSKLTTLHCI 262 (457)
T ss_dssp CCSSCCSC---------CCCTTCTTCSEEECCSSCCSCCC--CT--TCTTCSEEECCSSCCS-CCC-CTTCTTCCEEECT
T ss_pred CcCCcCCe---------eccccCCCCCEEECcCCcccccC--cc--ccCCCCEEEeeCCcCC-CcC-HHHCCCCCEEecc
Confidence 88664221 13677899999999999998887 33 5899999999998743 344 4566777766665
Q ss_pred CCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCcccccCCCCCccEEEEc
Q 048758 580 GMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQLLVTIQCLPALSELQID 659 (777)
Q Consensus 580 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~L~~L~l~ 659 (777)
++ +|+.|+++++.....+. ...+++|+.|++++|..+.......++|+.|+++
T Consensus 263 ~n--------------------~L~~L~l~~n~~~~~~~-------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 263 QT--------------------DLLEIDLTHNTQLIYFQ-------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp TC--------------------CCSCCCCTTCTTCCEEE-------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred CC--------------------CCCEEECCCCccCCccc-------ccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 42 23444444443222210 0234555555555554432222333444444444
Q ss_pred CCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCC
Q 048758 660 GCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRC 705 (777)
Q Consensus 660 ~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c 705 (777)
+| +.|+.|++++|.... .+ +..+++|++|+++++
T Consensus 316 ~~--------~~L~~L~L~~N~l~~-l~---l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 316 QN--------PKLVYLYLNNTELTE-LD---VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TC--------TTCCEEECTTCCCSC-CC---CTTCTTCSEEECCSS
T ss_pred hc--------ccCCEEECCCCcccc-cc---cccCCcCcEEECCCC
Confidence 44 234444444443222 21 455677777777663
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=6.3e-23 Score=222.60 Aligned_cols=349 Identities=19% Similarity=0.140 Sum_probs=226.1
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCccc-ccchhhhccccC-------------cEEeeCCCcCccccc
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNL-------------HTILLEDCWKLKKLC 408 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~l~~~~~l~~lp 408 (777)
.++|++|++++| .++.+|.+|+++++|++|++++|.+. .+|..++++.+| ++|++++| .+..+|
T Consensus 10 ~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC
T ss_pred cccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC
Confidence 578999999998 67999999999999999999999988 899999988875 99999999 788887
Q ss_pred hhccccCcccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhc
Q 048758 409 KDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQ 488 (777)
Q Consensus 409 ~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~ 488 (777)
.. .++|++|++++|. +..+|..+ ++|++|++..+.... +..+. ..|+ .+.+... .... .+ .
T Consensus 88 ~~---~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l~~n~l~~---l~~~~--~~L~-~L~L~~n----~l~~-lp-~ 148 (454)
T 1jl5_A 88 EL---PPHLESLVASCNS-LTELPELP---QSLKSLLVDNNNLKA---LSDLP--PLLE-YLGVSNN----QLEK-LP-E 148 (454)
T ss_dssp SC---CTTCSEEECCSSC-CSSCCCCC---TTCCEEECCSSCCSC---CCSCC--TTCC-EEECCSS----CCSS-CC-C
T ss_pred CC---cCCCCEEEccCCc-CCcccccc---CCCcEEECCCCccCc---ccCCC--CCCC-EEECcCC----CCCC-Cc-c
Confidence 62 4799999999998 77788643 667777654432221 11111 2232 3333321 1111 22 4
Q ss_pred cCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCC
Q 048758 489 LNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVG 568 (777)
Q Consensus 489 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~ 568 (777)
+..+++|+.|+++.+.... .+ ..+++|+.|++++|.+..+|. +. .+++|+.|++++|.. +.+|...
T Consensus 149 ~~~l~~L~~L~l~~N~l~~--------lp--~~~~~L~~L~L~~n~l~~l~~-~~--~l~~L~~L~l~~N~l-~~l~~~~ 214 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK--------LP--DLPPSLEFIAAGNNQLEELPE-LQ--NLPFLTAIYADNNSL-KKLPDLP 214 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC--------CC--CCCTTCCEEECCSSCCSSCCC-CT--TCTTCCEEECCSSCC-SSCCCCC
T ss_pred cCCCCCCCEEECCCCcCcc--------cC--CCcccccEEECcCCcCCcCcc-cc--CCCCCCEEECCCCcC-CcCCCCc
Confidence 7788899999998663211 11 123589999999998888874 33 589999999998864 3455432
Q ss_pred CCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCcccccC
Q 048758 569 QLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQLLVTIQ 648 (777)
Q Consensus 569 ~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 648 (777)
++|++|++++|. +..++ .+. .+++|+.|+++++.- ..+|..+++|+.|++++|.- ...-.
T Consensus 215 --~~L~~L~l~~n~-l~~lp-~~~------~l~~L~~L~l~~N~l---------~~l~~~~~~L~~L~l~~N~l-~~l~~ 274 (454)
T 1jl5_A 215 --LSLESIVAGNNI-LEELP-ELQ------NLPFLTTIYADNNLL---------KTLPDLPPSLEALNVRDNYL-TDLPE 274 (454)
T ss_dssp --TTCCEEECCSSC-CSSCC-CCT------TCTTCCEEECCSSCC---------SSCCSCCTTCCEEECCSSCC-SCCCC
T ss_pred --CcccEEECcCCc-CCccc-ccC------CCCCCCEEECCCCcC---------CcccccccccCEEECCCCcc-cccCc
Confidence 589999999874 34444 222 289999999998741 23445568999999999852 11112
Q ss_pred CCCCccEEEEcCCCCcccC-CCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCc
Q 048758 649 CLPALSELQIDGCKRVVFS-SPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCR 727 (777)
Q Consensus 649 ~l~~L~~L~l~~~~~l~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~ 727 (777)
.+++|++|++++|..-... ..+.|+.|++++|.... .+ ...++|++|+++++ .+..+|.. +++
T Consensus 275 ~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N-~l~~lp~~----------~~~ 338 (454)
T 1jl5_A 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNN-KLIELPAL----------PPR 338 (454)
T ss_dssp CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSS-CCSCCCCC----------CTT
T ss_pred ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCC-cccccccc----------CCc
Confidence 3588999999998754432 23789999999876432 21 11258999999995 67666532 389
Q ss_pred ccEEeeecCCCCCCchhhcCCCCCccEEEecCCCCCcccc
Q 048758 728 LQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCTSLVSFP 767 (777)
Q Consensus 728 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~l~~lp 767 (777)
|++|++++| .++.+|. .+++|++|++++|+ +..+|
T Consensus 339 L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~-l~~l~ 373 (454)
T 1jl5_A 339 LERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFP 373 (454)
T ss_dssp CCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCC
T ss_pred CCEEECCCC-ccccccc---hhhhccEEECCCCC-CCcCC
Confidence 999999995 7888987 57999999999874 44444
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=9.6e-23 Score=223.40 Aligned_cols=350 Identities=16% Similarity=0.111 Sum_probs=199.0
Q ss_pred CceeEEeecCccCcccc-CccccCcCccCeeeccCCccc-cc-chhhhccccCcEEeeCCCcCcccc-chhccccCcccE
Q 048758 344 PRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQ-IL-PESINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRH 419 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~-~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~~L~~ 419 (777)
++|++|+|++| .+..+ |..++++++|++|++++|.+. .+ |..+.++++|++|++++| .+..+ |..++++++|++
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCE
Confidence 67888888888 55554 677888888888888888876 44 456788888888888888 44444 667888888888
Q ss_pred EecCCcccccccCcc--cccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhh-ccCcccccc
Q 048758 420 LKNSNVHSLEEMPKG--FGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEA-QLNNKVNLE 496 (777)
Q Consensus 420 L~l~~~~~~~~~p~~--~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~-~l~~~~~L~ 496 (777)
|++++|......|.. ++.+++|++|++..+.. ....+. .+..+++|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l------------------------------~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI------------------------------KKIQPASFFLNMRRFH 157 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBC------------------------------CSCCCCGGGGGCTTCC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCcc------------------------------CccCcccccCCCCccc
Confidence 888888733233433 66666666664322110 000011 133344555
Q ss_pred cceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCC-cccCCCCCCCeeEEEEeCCCCCCCCC-C--------
Q 048758 497 ALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFP-IWLGDSSFSKLVQLKLEGCGKCTSLP-S-------- 566 (777)
Q Consensus 497 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~-------- 566 (777)
.|+++ +|.+...+ ..+......+|+.|++++|......+ .
T Consensus 158 ~L~L~------------------------------~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 158 VLDLT------------------------------FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp EEECT------------------------------TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred EEeCC------------------------------CCcccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 55544 44433221 11111112345555555443221111 1
Q ss_pred CCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccc------cCCCC-CCCCCccEEEEec
Q 048758 567 VGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCG------AGTLP-RRLLLLETLDITS 639 (777)
Q Consensus 567 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~------~~~~~-~~l~~L~~L~l~~ 639 (777)
+..+++|++|++++|......+..+... ...++|+.|+++++......+... ...+. ...++|++|++++
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDA---IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHH---TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred ccccceeeeEecCCCcccccchhhhhcc---ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecC
Confidence 1233455555555543222222111110 012445555554442211100000 00000 0135677777777
Q ss_pred CCC---cccccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccc
Q 048758 640 CDQ---LLVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSL 711 (777)
Q Consensus 640 c~~---l~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l 711 (777)
|.. .+..+..+++|++|++++|.... +..++.|+.|++++|.. +..+...+..+++|++|++++| .+..+
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N-~l~~~ 362 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN-HIRAL 362 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCSS-CCCEE
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEECCCC-ccccc
Confidence 752 24556777788888888776433 33557788888877644 4555566778899999999996 55555
Q ss_pred cccccccCCCCCcCCcccEEeeecCCCCCCchh-hcCCCCCccEEEecCCCCCcccc
Q 048758 712 VTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQ-ALLTLSSLTEMRIYGCTSLVSFP 767 (777)
Q Consensus 712 ~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~lp 767 (777)
+... +..+ ++|++|++++ +.++.+|. .+..+++|++|++++|+.-...|
T Consensus 363 ~~~~-----~~~l-~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 363 GDQS-----FLGL-PNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTT-----TTTC-TTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred Chhh-----cccc-ccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 2211 2333 7899999999 46777765 45788999999999887666555
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.9e-22 Score=221.03 Aligned_cols=337 Identities=18% Similarity=0.192 Sum_probs=210.5
Q ss_pred CccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccC
Q 048758 287 SQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGN 366 (777)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~ 366 (777)
...++.+.+.++.... .+.+..+++++.|... .+.+..- . . +.++++|++|++++| .+..++. +++
T Consensus 45 l~~l~~L~l~~~~i~~---l~~~~~l~~L~~L~Ls------~n~l~~~-~-~-~~~l~~L~~L~l~~n-~l~~~~~-~~~ 110 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS---IDGVEYLNNLTQINFS------NNQLTDI-T-P-LKNLTKLVDILMNNN-QIADITP-LAN 110 (466)
T ss_dssp HHTCCEEECCSSCCCC---CTTGGGCTTCCEEECC------SSCCCCC-G-G-GTTCTTCCEEECCSS-CCCCCGG-GTT
T ss_pred hccccEEecCCCCCcc---CcchhhhcCCCEEECC------CCccCCc-h-h-hhccccCCEEECCCC-ccccChh-hcC
Confidence 3567777776654433 3446788899998443 3433221 1 2 789999999999998 7777776 999
Q ss_pred cCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcccccccCCcccCc
Q 048758 367 LKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 367 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
+++|++|++++|.++.+|. +.++++|++|++++| .+..+|. ++++++|++|++++ . +..++. ++++++|+.|++
T Consensus 111 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l 184 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDI 184 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCC-c-ccCchh-hccCCCCCEEEC
Confidence 9999999999999998876 899999999999999 6777764 89999999999964 3 444433 778888888765
Q ss_pred EEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCC
Q 048758 447 FVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQ 526 (777)
Q Consensus 447 ~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 526 (777)
..+..... . .+..+++|+.|+++.+.... ...++.+++|+
T Consensus 185 ~~n~l~~~---~-----------------------------~l~~l~~L~~L~l~~n~l~~--------~~~~~~l~~L~ 224 (466)
T 1o6v_A 185 SSNKVSDI---S-----------------------------VLAKLTNLESLIATNNQISD--------ITPLGILTNLD 224 (466)
T ss_dssp CSSCCCCC---G-----------------------------GGGGCTTCSEEECCSSCCCC--------CGGGGGCTTCC
T ss_pred cCCcCCCC---h-----------------------------hhccCCCCCEEEecCCcccc--------cccccccCCCC
Confidence 43322111 1 13344555566555432111 11134456677
Q ss_pred eEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCcee
Q 048758 527 ELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEAL 606 (777)
Q Consensus 527 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L 606 (777)
.|++++|.+..++.. . .+++|+.|++++|.. ..++.++.+++|++|++++|.... ++. +. .+++|+.|
T Consensus 225 ~L~l~~n~l~~~~~l-~--~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~------~l~~L~~L 292 (466)
T 1o6v_A 225 ELSLNGNQLKDIGTL-A--SLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISN-ISP-LA------GLTALTNL 292 (466)
T ss_dssp EEECCSSCCCCCGGG-G--GCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCC-CGG-GT------TCTTCSEE
T ss_pred EEECCCCCcccchhh-h--cCCCCCEEECCCCcc-ccchhhhcCCCCCEEECCCCccCc-ccc-cc------CCCccCeE
Confidence 777777766655432 2 366777777777653 333346666777777777664222 221 11 26777777
Q ss_pred eccCccchhhhhccccCCCCCCCCCccEEEEecCCCc-ccccCCCCCccEEEEcCCCCcc---cCCCCCccEEEEeecCc
Q 048758 607 SFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQL-LVTIQCLPALSELQIDGCKRVV---FSSPHLVHAVNVREQAY 682 (777)
Q Consensus 607 ~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~l~~L~~L~l~~~~~l~---~~~~~~L~~L~l~~~~~ 682 (777)
+++++. +..+.+ ...+++|+.|++++|.-- ...+..+++|++|++++|.... +..++.|+.|++++|..
T Consensus 293 ~L~~n~-l~~~~~------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 293 ELNENQ-LEDISP------ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp ECCSSC-CSCCGG------GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred EcCCCc-ccCchh------hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCcc
Confidence 777653 111110 134667777777777421 1125567777777777775322 23345555555555543
Q ss_pred cccccccCCCCCCCCCeEEccCC
Q 048758 683 FWRSETRLPQDIRSLNRLQISRC 705 (777)
Q Consensus 683 ~~~~~~~~~~~l~~L~~L~l~~c 705 (777)
....+ +..+++|++|++++|
T Consensus 366 ~~~~~---~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 366 SDLTP---LANLTRITQLGLNDQ 385 (466)
T ss_dssp CBCGG---GTTCTTCCEEECCCE
T ss_pred Cccch---hhcCCCCCEEeccCC
Confidence 22222 455666777777665
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=5.9e-22 Score=217.11 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=99.8
Q ss_pred CCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCcccc-CccccCcCccCeeeccCCccccc-chhhhcc
Q 048758 313 QHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQIL-PESINSL 390 (777)
Q Consensus 313 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L 390 (777)
++++.| +++.+.+. ...+..|.++++|++|++++|.....+ |..|+++++|++|++++|.++.+ |..++++
T Consensus 30 ~~l~~L------~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 30 AHVNYV------DLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp TTCCEE------ECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CccCEE------EecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 567777 34444442 233556899999999999999443355 56789999999999999999966 7789999
Q ss_pred ccCcEEeeCCCcCcc-ccchh--ccccCcccEEecCCccccccc-Ccc-cccccCCcccCcEEe
Q 048758 391 YNLHTILLEDCWKLK-KLCKD--MGNLTKLRHLKNSNVHSLEEM-PKG-FGKLTSLLTLGRFVV 449 (777)
Q Consensus 391 ~~L~~L~l~~~~~l~-~lp~~--~~~L~~L~~L~l~~~~~~~~~-p~~-~~~l~~L~~L~~~~~ 449 (777)
++|++|++++| .+. .+|.. ++++++|++|++++|. +..+ |.. ++++++|++|++..+
T Consensus 103 ~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 103 ANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp TTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTC
T ss_pred ccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCC
Confidence 99999999999 554 45554 8899999999999999 5555 555 788999998865443
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=3.5e-22 Score=229.12 Aligned_cols=427 Identities=21% Similarity=0.194 Sum_probs=272.1
Q ss_pred CccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccch-hhhccc
Q 048758 314 HLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLY 391 (777)
Q Consensus 314 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~ 391 (777)
.++.| +++.|.+. ...+..|.++++|++|+|++| .+..+| .+|+++++|++|+|++|+++.+|+ .+.+++
T Consensus 53 ~~~~L------dLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~ 124 (635)
T 4g8a_A 53 STKNL------DLSFNPLR-HLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 124 (635)
T ss_dssp TCCEE------ECTTSCCC-EECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT
T ss_pred CCCEE------EeeCCCCC-CCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC
Confidence 56666 45555542 334556899999999999999 788875 468999999999999999999886 479999
Q ss_pred cCcEEeeCCCcCccccch-hccccCcccEEecCCccccc--ccCcccccccCCcccCcEEecCCC--CCCcccccccccc
Q 048758 392 NLHTILLEDCWKLKKLCK-DMGNLTKLRHLKNSNVHSLE--EMPKGFGKLTSLLTLGRFVVGKDS--GSGLRQLKSLAHL 466 (777)
Q Consensus 392 ~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~~~~~~~~~--~~~~~~l~~L~~L 466 (777)
+|++|++++| .+..+|. .++++++|++|++++|. +. ..|..++.+++|++|++..+.... ...+..+.++...
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999 7888876 48999999999999998 54 356778899999998765443221 1122222222111
Q ss_pred CCcEEEc--------------------cccccCCcccchhhccCcccccccce---------------------------
Q 048758 467 QGRLKIS--------------------KLENVKDVGDASEAQLNNKVNLEALI--------------------------- 499 (777)
Q Consensus 467 ~~~l~i~--------------------~l~~~~~~~~~~~~~l~~~~~L~~L~--------------------------- 499 (777)
...+.+. .+.............+..+..++...
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~ 282 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 282 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence 1000000 00000000000111111111221111
Q ss_pred ---EeeccCCCcc-------------------chHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeC
Q 048758 500 ---LEWSARSERC-------------------EFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEG 557 (777)
Q Consensus 500 ---l~~~~~~~~~-------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~ 557 (777)
+......... .........+....+++.|++.++.+..++.. .++.|+.+.+.+
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~ 358 (635)
T 4g8a_A 283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTS 358 (635)
T ss_dssp EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEES
T ss_pred hhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc----cchhhhhccccc
Confidence 1111000000 00000011223345666777766665544432 356777777777
Q ss_pred CCCCCCCCCCCCCCCcceeeecCCCCceEe--CcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEE
Q 048758 558 CGKCTSLPSVGQLPFLKELLISGMDGVKIV--GLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETL 635 (777)
Q Consensus 558 ~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L 635 (777)
+... ..+....+++|+.|+++++...... +..+. ..++|+.+++..+..... ......+++|+.+
T Consensus 359 n~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~------~~~~L~~L~~~~~~~~~~------~~~~~~l~~L~~l 425 (635)
T 4g8a_A 359 NKGG-NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF------GTISLKYLDLSFNGVITM------SSNFLGLEQLEHL 425 (635)
T ss_dssp CCSC-CBCCCCBCTTCCEEECCSSCCBEEEECCHHHH------SCSCCCEEECCSCSEEEE------CSCCTTCTTCCEE
T ss_pred ccCC-CCcccccccccccchhhccccccccccccchh------hhhhhhhhhccccccccc------cccccccccccch
Confidence 6533 3344556888888888876543222 11121 267888888877643211 1122457889999
Q ss_pred EEecCCCc----ccccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCC
Q 048758 636 DITSCDQL----LVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCP 706 (777)
Q Consensus 636 ~l~~c~~l----~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 706 (777)
++..+... ...+..+++++.+++++|.... +...+.++.|++.+|.......+..+..+++|++|++++|
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N- 504 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC- 504 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-
Confidence 99887533 2456788999999999987443 4567899999999998777777788899999999999997
Q ss_pred CCccccccccccCCCCCcCCcccEEeeecCCCCCCch-hhcCCCCCccEEEecCCCCCccccCCC---CCCCCC
Q 048758 707 QLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLP-QALLTLSSLTEMRIYGCTSLVSFPEVA---LPSQLR 776 (777)
Q Consensus 707 ~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~~---~p~~l~ 776 (777)
.+..++... +..+ ++|++|+|++| +++.++ ..+..+++|++|++++| .++.+|... +|++|+
T Consensus 505 ~L~~l~~~~-----f~~l-~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 505 QLEQLSPTA-----FNSL-SSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp CCCEECTTT-----TTTC-TTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCC
T ss_pred ccCCcChHH-----HcCC-CCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCC
Confidence 677764332 2344 79999999995 777765 56789999999999986 556665543 456665
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=215.75 Aligned_cols=292 Identities=22% Similarity=0.178 Sum_probs=165.1
Q ss_pred CceeEEeecCccCcccc-CccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccchh-ccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L 420 (777)
+++++|+|++| .+..+ |..|.++++|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEE
Confidence 46788888877 56554 46678888888888888888755 567788888888888887 66677654 5778888888
Q ss_pred ecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceE
Q 048758 421 KNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALIL 500 (777)
Q Consensus 421 ~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 500 (777)
++++|......|..+..+++|++|.+..+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n--------------------------------------------------- 138 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDN--------------------------------------------------- 138 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCT---------------------------------------------------
T ss_pred ECCCCccccCChhHccccccCCEEECCCC---------------------------------------------------
Confidence 88887733333444556666655532111
Q ss_pred eeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcc-cCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeee
Q 048758 501 EWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIW-LGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLI 578 (777)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L 578 (777)
. ........+..+++|+.|++.+|.+..+|.. +. .+++|+.|++.+|......+ .+..+++|++|++
T Consensus 139 ---~------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 139 ---D------LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS--HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp ---T------CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT--TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred ---c------cceeChhhccCCCCCCEEECCCCcCcccChhHhc--ccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 0 0000112344556677777777777666643 33 47777788887776443333 5667777777777
Q ss_pred cCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCCc---ccccCCCCCccE
Q 048758 579 SGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQL---LVTIQCLPALSE 655 (777)
Q Consensus 579 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~l---~~~~~~l~~L~~ 655 (777)
++|..+..++..... .++|+.|+++++. +..+.. .....+++|+.|++++|.-- +..+..+++|++
T Consensus 208 ~~~~~~~~~~~~~~~------~~~L~~L~l~~n~-l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 208 SHWPYLDTMTPNCLY------GLNLTSLSITHCN-LTAVPY----LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp ECCTTCCEECTTTTT------TCCCSEEEEESSC-CCSCCH----HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred CCCccccccCccccc------CccccEEECcCCc-ccccCH----HHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 777666555443322 2355555555442 110000 00022344444444444311 122334444444
Q ss_pred EEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeec
Q 048758 656 LQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRN 735 (777)
Q Consensus 656 L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~ 735 (777)
|++++|. +.......+..+++|++|++++| .+..++... +..+ ++|++|++++
T Consensus 277 L~L~~n~--------------------l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-----~~~l-~~L~~L~l~~ 329 (477)
T 2id5_A 277 IQLVGGQ--------------------LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESV-----FHSV-GNLETLILDS 329 (477)
T ss_dssp EECCSSC--------------------CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGG-----BSCG-GGCCEEECCS
T ss_pred EECCCCc--------------------cceECHHHhcCcccCCEEECCCC-cCceeCHhH-----cCCC-cccCEEEccC
Confidence 4444432 12233344556677777777774 555554432 1222 5677777777
Q ss_pred CC
Q 048758 736 CE 737 (777)
Q Consensus 736 c~ 737 (777)
|+
T Consensus 330 N~ 331 (477)
T 2id5_A 330 NP 331 (477)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.4e-21 Score=207.39 Aligned_cols=300 Identities=17% Similarity=0.174 Sum_probs=206.2
Q ss_pred CCceeEEeecCccCccccCcc-ccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccc-hhccccCcccE
Q 048758 343 LPRLRVFSLRGYCNIFNLPNE-IGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRH 419 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~ 419 (777)
++++++|+++++ .+..+|.. +..+++|++|++++|.++.+|+ .+..+++|++|++++| .+..+| ..++++++|++
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 578889999887 67888765 5788899999999998887764 7888999999999988 566554 45788899999
Q ss_pred EecCCcccccccCcc-cccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccc
Q 048758 420 LKNSNVHSLEEMPKG-FGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEAL 498 (777)
Q Consensus 420 L~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 498 (777)
|++++|. +..+|.. ++.+++|++|++..+..
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l----------------------------------------------- 153 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNL----------------------------------------------- 153 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-----------------------------------------------
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCCcc-----------------------------------------------
Confidence 9999887 6777765 46677776663321100
Q ss_pred eEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeee
Q 048758 499 ILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLI 578 (777)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L 578 (777)
.......+..+++|+.|++++|.+..++. . .+++|+.|++++|.. . .+...++|++|++
T Consensus 154 -------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~--~l~~L~~L~l~~n~l-~---~~~~~~~L~~L~l 212 (390)
T 3o6n_A 154 -------------ERIEDDTFQATTSLQNLQLSSNRLTHVDL--S--LIPSLFHANVSYNLL-S---TLAIPIAVEELDA 212 (390)
T ss_dssp -------------CBCCTTTTSSCTTCCEEECCSSCCSBCCG--G--GCTTCSEEECCSSCC-S---EEECCSSCSEEEC
T ss_pred -------------CccChhhccCCCCCCEEECCCCcCCcccc--c--cccccceeecccccc-c---ccCCCCcceEEEC
Confidence 00011234566788999999988876642 2 488999999998853 2 2233467999999
Q ss_pred cCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC---cccccCCCCCccE
Q 048758 579 SGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ---LLVTIQCLPALSE 655 (777)
Q Consensus 579 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~ 655 (777)
++|.. ..++... +++|+.|+++++.- ... .....+++|++|++++|.. .+..+..+++|++
T Consensus 213 ~~n~l-~~~~~~~--------~~~L~~L~l~~n~l-~~~------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 213 SHNSI-NVVRGPV--------NVELTILKLQHNNL-TDT------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp CSSCC-CEEECCC--------CSSCCEEECCSSCC-CCC------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCCee-eeccccc--------cccccEEECCCCCC-ccc------HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 98753 3333222 67888898888642 110 1113467788888888752 2456677788888
Q ss_pred EEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeec
Q 048758 656 LQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRN 735 (777)
Q Consensus 656 L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~ 735 (777)
|++++|.... .+ ..+..+++|++|++++| .+..++..... + ++|++|++++
T Consensus 277 L~L~~n~l~~--------------------~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~------l-~~L~~L~L~~ 327 (390)
T 3o6n_A 277 LYISNNRLVA--------------------LN-LYGQPIPTLKVLDLSHN-HLLHVERNQPQ------F-DRLENLYLDH 327 (390)
T ss_dssp EECCSSCCCE--------------------EE-CSSSCCTTCCEEECCSS-CCCCCGGGHHH------H-TTCSEEECCS
T ss_pred EECCCCcCcc--------------------cC-cccCCCCCCCEEECCCC-cceecCccccc------c-CcCCEEECCC
Confidence 8888765221 11 12346788888888886 66666654422 2 6888888888
Q ss_pred CCCCCCchhhcCCCCCccEEEecCCC
Q 048758 736 CEGLTRLPQALLTLSSLTEMRIYGCT 761 (777)
Q Consensus 736 c~~l~~lp~~~~~l~~L~~L~l~~c~ 761 (777)
| .++.+| +..+++|++|++++|+
T Consensus 328 N-~i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 328 N-SIVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp S-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred C-ccceeC--chhhccCCEEEcCCCC
Confidence 5 566665 6678888888888764
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4e-22 Score=213.43 Aligned_cols=301 Identities=20% Similarity=0.154 Sum_probs=210.5
Q ss_pred cCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccch-hhh
Q 048758 311 DVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SIN 388 (777)
Q Consensus 311 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~ 388 (777)
.+++++.+...+ +.+ ...++..+.++++|++|++++| .+..++ ..++.+++|++|++++|.++.+|+ .++
T Consensus 43 ~l~~l~~l~l~~------~~l-~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKN------STM-RKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEES------CEE-SEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecC------Cch-hhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 456666664332 221 2234455788999999999998 677765 578999999999999999997764 589
Q ss_pred ccccCcEEeeCCCcCccccchh-ccccCcccEEecCCcccccccC-cccccccCCcccCcEEecCCCCCCcccccccccc
Q 048758 389 SLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKNSNVHSLEEMP-KGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHL 466 (777)
Q Consensus 389 ~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 466 (777)
++++|++|++++| .+..+|.. ++++++|++|++++|. +..++ ..++.+++|++|++..+.....
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------ 180 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV------------ 180 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBC------------
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCcc------------
Confidence 9999999999999 78888876 5899999999999998 55554 4588888888885543321110
Q ss_pred CCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCC
Q 048758 467 QGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSS 546 (777)
Q Consensus 467 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 546 (777)
.+..+++|+.+.++.+. +..+..+++|+.|++++|.+..+|.. .
T Consensus 181 ---------------------~~~~l~~L~~L~l~~n~-----------l~~~~~~~~L~~L~l~~n~l~~~~~~----~ 224 (390)
T 3o6n_A 181 ---------------------DLSLIPSLFHANVSYNL-----------LSTLAIPIAVEELDASHNSINVVRGP----V 224 (390)
T ss_dssp ---------------------CGGGCTTCSEEECCSSC-----------CSEEECCSSCSEEECCSSCCCEEECC----C
T ss_pred ---------------------ccccccccceeeccccc-----------ccccCCCCcceEEECCCCeeeecccc----c
Confidence 12234566666665442 12334456799999999888766543 3
Q ss_pred CCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCC
Q 048758 547 FSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLP 626 (777)
Q Consensus 547 l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 626 (777)
+++|+.|++++|.. +..+.++.+++|++|++++|......+..+.. +++|+.|+++++. +..+ + ...
T Consensus 225 ~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~-~----~~~ 291 (390)
T 3o6n_A 225 NVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVAL-N----LYG 291 (390)
T ss_dssp CSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECCSSC-CCEE-E----CSS
T ss_pred cccccEEECCCCCC-cccHHHcCCCCccEEECCCCcCCCcChhHccc------cccCCEEECCCCc-Cccc-C----ccc
Confidence 67899999999864 45677888999999999988654444444433 7889999998864 2221 1 112
Q ss_pred CCCCCccEEEEecCC--CcccccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccC
Q 048758 627 RRLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISR 704 (777)
Q Consensus 627 ~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 704 (777)
..+++|++|++++|. .++..+..+++|++|++++|+... .+ +..+++|++|++++
T Consensus 292 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~--------------------~~---~~~~~~L~~L~l~~ 348 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT--------------------LK---LSTHHTLKNLTLSH 348 (390)
T ss_dssp SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC--------------------CC---CCTTCCCSEEECCS
T ss_pred CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccce--------------------eC---chhhccCCEEEcCC
Confidence 457788888888884 345556677888888888876321 11 34567777888777
Q ss_pred C
Q 048758 705 C 705 (777)
Q Consensus 705 c 705 (777)
+
T Consensus 349 N 349 (390)
T 3o6n_A 349 N 349 (390)
T ss_dssp S
T ss_pred C
Confidence 5
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=8.9e-21 Score=214.29 Aligned_cols=300 Identities=17% Similarity=0.169 Sum_probs=201.4
Q ss_pred CCceeEEeecCccCccccCcc-ccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccE
Q 048758 343 LPRLRVFSLRGYCNIFNLPNE-IGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRH 419 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~ 419 (777)
+.++++|++++| .+..+|.. ++++++|++|++++|.++.+|+ .++.+++|++|++++| .+..+|. .++++++|++
T Consensus 50 l~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 567888888877 67777765 4778888889998888887664 7888888889988888 5665654 4688888888
Q ss_pred EecCCcccccccCcc-cccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccc
Q 048758 420 LKNSNVHSLEEMPKG-FGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEAL 498 (777)
Q Consensus 420 L~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 498 (777)
|++++|. +..+|.. ++.+++|++|++..+..
T Consensus 128 L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l----------------------------------------------- 159 (597)
T 3oja_B 128 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNNL----------------------------------------------- 159 (597)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-----------------------------------------------
T ss_pred EEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcC-----------------------------------------------
Confidence 8888887 6677665 46677776663321100
Q ss_pred eEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeee
Q 048758 499 ILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLI 578 (777)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L 578 (777)
.......++.+++|+.|++++|.+..++. . .+++|+.|++++|.. . .+...++|++|++
T Consensus 160 -------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~--~l~~L~~L~l~~n~l-~---~l~~~~~L~~L~l 218 (597)
T 3oja_B 160 -------------ERIEDDTFQATTSLQNLQLSSNRLTHVDL--S--LIPSLFHANVSYNLL-S---TLAIPIAVEELDA 218 (597)
T ss_dssp -------------CBCCTTTTTTCTTCCEEECTTSCCSBCCG--G--GCTTCSEEECCSSCC-S---EEECCTTCSEEEC
T ss_pred -------------CCCChhhhhcCCcCcEEECcCCCCCCcCh--h--hhhhhhhhhcccCcc-c---cccCCchhheeec
Confidence 00011235566788999999988877652 2 488999999998853 2 2334567999999
Q ss_pred cCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC---cccccCCCCCccE
Q 048758 579 SGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ---LLVTIQCLPALSE 655 (777)
Q Consensus 579 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~---l~~~~~~l~~L~~ 655 (777)
++|.. ..++... +++|+.|+++++.-- .. .....+++|+.|++++|.. .|..+..+++|++
T Consensus 219 s~n~l-~~~~~~~--------~~~L~~L~L~~n~l~-~~------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 219 SHNSI-NVVRGPV--------NVELTILKLQHNNLT-DT------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp CSSCC-CEEECSC--------CSCCCEEECCSSCCC-CC------GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cCCcc-ccccccc--------CCCCCEEECCCCCCC-CC------hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 98753 3333222 578899998887421 10 1113467888888888852 2566778888888
Q ss_pred EEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeec
Q 048758 656 LQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRN 735 (777)
Q Consensus 656 L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~ 735 (777)
|++++|.... .+ ..+..+++|++|++++| .+..+|.... .+ ++|++|++++
T Consensus 283 L~Ls~N~l~~--------------------l~-~~~~~l~~L~~L~Ls~N-~l~~i~~~~~------~l-~~L~~L~L~~ 333 (597)
T 3oja_B 283 LYISNNRLVA--------------------LN-LYGQPIPTLKVLDLSHN-HLLHVERNQP------QF-DRLENLYLDH 333 (597)
T ss_dssp EECTTSCCCE--------------------EE-CSSSCCTTCCEEECCSS-CCCCCGGGHH------HH-TTCSEEECCS
T ss_pred EECCCCCCCC--------------------CC-cccccCCCCcEEECCCC-CCCccCcccc------cC-CCCCEEECCC
Confidence 8888875221 11 12245677777777775 5556654432 12 6777888877
Q ss_pred CCCCCCchhhcCCCCCccEEEecCCC
Q 048758 736 CEGLTRLPQALLTLSSLTEMRIYGCT 761 (777)
Q Consensus 736 c~~l~~lp~~~~~l~~L~~L~l~~c~ 761 (777)
| .+..+| +..+++|+.|++++|+
T Consensus 334 N-~l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 334 N-SIVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp S-CCCCCC--CCTTCCCSEEECCSSC
T ss_pred C-CCCCcC--hhhcCCCCEEEeeCCC
Confidence 4 455554 5567777788777765
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.6e-21 Score=203.78 Aligned_cols=102 Identities=24% Similarity=0.399 Sum_probs=63.3
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
+..+++|++|++++| .+..+|. +..+++|++|++++|.++.+| .+.++++|++|++++| .+..+|. +.++++|++
T Consensus 62 ~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED-NISDISP-LANLTKMYS 136 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC-cccCchh-hccCCceeE
Confidence 455666777777666 5556555 666667777777776666654 4666667777777666 5555554 666667777
Q ss_pred EecCCcccccccCcccccccCCcccCcE
Q 048758 420 LKNSNVHSLEEMPKGFGKLTSLLTLGRF 447 (777)
Q Consensus 420 L~l~~~~~~~~~p~~~~~l~~L~~L~~~ 447 (777)
|++++|.....++ .+..+++|++|.+.
T Consensus 137 L~l~~n~~~~~~~-~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 137 LNLGANHNLSDLS-PLSNMTGLNYLTVT 163 (347)
T ss_dssp EECTTCTTCCCCG-GGTTCTTCCEEECC
T ss_pred EECCCCCCccccc-chhhCCCCcEEEec
Confidence 7776665344333 35566666655443
No 42
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.86 E-value=6e-22 Score=224.09 Aligned_cols=221 Identities=24% Similarity=0.353 Sum_probs=171.6
Q ss_pred CCCCHHHHHHHHHHHhCC--CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHHhhcccCCcccc---CC
Q 048758 19 NDDDLNSLQVKLKERLSG--KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAATMRAVSGKTL---KE 93 (777)
Q Consensus 19 ~~~~~~~~~~~l~~~L~~--~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~~~~~~~~l---~~ 93 (777)
...+.+.....+++.+.+ +++||||||||+.. .+. +.++|++||||||++.++..+. ...+.+ ++
T Consensus 216 ~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l~-------~l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~ 285 (591)
T 1z6t_A 216 LPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VLK-------AFDSQCQILLTTRDKSVTDSVM-GPKYVVPVESS 285 (591)
T ss_dssp CCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HHH-------TTCSSCEEEEEESCGGGGTTCC-SCEEEEECCSS
T ss_pred CCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HHH-------HhcCCCeEEEECCCcHHHHhcC-CCceEeecCCC
Confidence 345678888899998876 79999999998752 332 2357899999999998877654 233444 58
Q ss_pred CChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHHHhcccccc--------c
Q 048758 94 LSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFVLNTNIWDL--------R 165 (777)
Q Consensus 94 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~~~~~~~~~--------~ 165 (777)
|+.+||++||...++... ....+.+.+|+++|+|+|+||+.+|++++.++ ..|...++...... .
T Consensus 286 L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~ 358 (591)
T 1z6t_A 286 LGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSS 358 (591)
T ss_dssp CCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCS
T ss_pred CCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccc
Confidence 999999999999986421 22236789999999999999999999998864 46876665432211 1
Q ss_pred cCccCchhhHhhcccCCChhhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHHHHHHHHHHHhhCccccc
Q 048758 166 EDKCDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQL 245 (777)
Q Consensus 166 ~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~ 245 (777)
.....+..++..||+.||++.|.||+++|+||+++.++...+...|... .+.+..+++.|++++|++.
T Consensus 359 ~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 359 YDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp SCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEE
T ss_pred cchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEE
Confidence 1224688899999999999999999999999999999999888888431 2356788999999999986
Q ss_pred ccCC-CCcEEecHHHHHHHHHhhc
Q 048758 246 SSKD-TSRFVMHDLINDLARWAAG 268 (777)
Q Consensus 246 ~~~~-~~~~~mhd~i~~~~~~~~~ 268 (777)
...+ ...|.||++++++++....
T Consensus 427 ~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 427 DRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp EEETTEEEEECCHHHHHHHHHHTG
T ss_pred ecCCCccEEEEcHHHHHHHHhhhh
Confidence 5422 3479999999999987743
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.2e-21 Score=221.45 Aligned_cols=283 Identities=21% Similarity=0.177 Sum_probs=198.7
Q ss_pred HHHHHHccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchh-c
Q 048758 335 ALQMLLNHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKD-M 411 (777)
Q Consensus 335 ~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-~ 411 (777)
.++.++.++++|++|+|++| .+..+| ..|+.+++|++|+|++|.++.+|+. ++++++|++|++++| .+..+|.. +
T Consensus 66 lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 143 (597)
T 3oja_B 66 LPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIF 143 (597)
T ss_dssp ECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHh
Confidence 44566888999999999998 676655 5899999999999999999987754 689999999999999 78888876 5
Q ss_pred cccCcccEEecCCcccccccC-cccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccC
Q 048758 412 GNLTKLRHLKNSNVHSLEEMP-KGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLN 490 (777)
Q Consensus 412 ~~L~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~ 490 (777)
+++++|++|++++|. +..++ ..++.+++|++|++..+..... .+.
T Consensus 144 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------------------~~~ 189 (597)
T 3oja_B 144 HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHV---------------------------------DLS 189 (597)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBC---------------------------------CGG
T ss_pred ccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCc---------------------------------Chh
Confidence 899999999999998 55554 4688899998885533221110 022
Q ss_pred cccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCC
Q 048758 491 NKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQL 570 (777)
Q Consensus 491 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l 570 (777)
.+++|+.|+++.+. +..+..+++|+.|++++|.+..++..+ .++|+.|+|++|.. +..++++.+
T Consensus 190 ~l~~L~~L~l~~n~-----------l~~l~~~~~L~~L~ls~n~l~~~~~~~----~~~L~~L~L~~n~l-~~~~~l~~l 253 (597)
T 3oja_B 190 LIPSLFHANVSYNL-----------LSTLAIPIAVEELDASHNSINVVRGPV----NVELTILKLQHNNL-TDTAWLLNY 253 (597)
T ss_dssp GCTTCSEEECCSSC-----------CSEEECCTTCSEEECCSSCCCEEECSC----CSCCCEEECCSSCC-CCCGGGGGC
T ss_pred hhhhhhhhhcccCc-----------cccccCCchhheeeccCCccccccccc----CCCCCEEECCCCCC-CCChhhccC
Confidence 34556666665432 223345567888888888876665433 46788999988864 445678888
Q ss_pred CCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--CcccccC
Q 048758 571 PFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QLLVTIQ 648 (777)
Q Consensus 571 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~ 648 (777)
++|++|+|++|......+..+.. +++|+.|+++++. +..+ + .....+++|+.|++++|. .+|..+.
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~-l~~l-~----~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 321 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVAL-N----LYGQPIPTLKVLDLSHNHLLHVERNQP 321 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTTSC-CCEE-E----CSSSCCTTCCEEECCSSCCCCCGGGHH
T ss_pred CCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCCCC-CCCC-C----cccccCCCCcEEECCCCCCCccCcccc
Confidence 88999999887655554544433 7888888888764 2221 1 112347788888888885 3466667
Q ss_pred CCCCccEEEEcCCCCcc--cCCCCCccEEEEeecC
Q 048758 649 CLPALSELQIDGCKRVV--FSSPHLVHAVNVREQA 681 (777)
Q Consensus 649 ~l~~L~~L~l~~~~~l~--~~~~~~L~~L~l~~~~ 681 (777)
.+++|++|++++|.... ...++.|+.|++++|+
T Consensus 322 ~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp HHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSC
T ss_pred cCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCC
Confidence 78888888888876332 2223444444444443
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=4.5e-21 Score=199.07 Aligned_cols=229 Identities=24% Similarity=0.386 Sum_probs=156.1
Q ss_pred cCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEe
Q 048758 342 HLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLK 421 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~ 421 (777)
...++++|+|++| .+..+|..++++++|++|++++|.++.+|..++++++|++|++++| .+..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 3588999999998 7889999999999999999999999999999999999999999999 7779999999999999999
Q ss_pred cCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEe
Q 048758 422 NSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILE 501 (777)
Q Consensus 422 l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 501 (777)
+++|..+..+|..++.... ...+..+++|+.|+++
T Consensus 157 L~~n~~~~~~p~~~~~~~~---------------------------------------------~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDA---------------------------------------------SGEHQGLVNLQSLRLE 191 (328)
T ss_dssp EEEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEE
T ss_pred CCCCCCccccChhHhhccc---------------------------------------------hhhhccCCCCCEEECc
Confidence 9998877777765543100 0001222344444444
Q ss_pred eccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeecC
Q 048758 502 WSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLISG 580 (777)
Q Consensus 502 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~ 580 (777)
.+... ..+..++.+++|+.|++++|.+..+|..+. .+++|+.|++++|.....+| .++.+++|++|++++
T Consensus 192 ~n~l~-------~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 192 WTGIR-------SLPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp EECCC-------CCCGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCCcC-------cchHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 33211 112234445556666666666655555544 45666666666665555555 455566666666666
Q ss_pred CCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC---CcccccCCCCCccEEE
Q 048758 581 MDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD---QLLVTIQCLPALSELQ 657 (777)
Q Consensus 581 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~---~l~~~~~~l~~L~~L~ 657 (777)
|.....++..+ ..+++|++|++++|. .+|..+..+++|+.++
T Consensus 263 n~~~~~~p~~~-----------------------------------~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 263 CSNLLTLPLDI-----------------------------------HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCCBCCTTG-----------------------------------GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CCchhhcchhh-----------------------------------hcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 55444443322 234556666666664 3477788888888888
Q ss_pred EcCC
Q 048758 658 IDGC 661 (777)
Q Consensus 658 l~~~ 661 (777)
+..+
T Consensus 308 l~~~ 311 (328)
T 4fcg_A 308 VPPH 311 (328)
T ss_dssp CCGG
T ss_pred CCHH
Confidence 8754
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=9.9e-21 Score=208.53 Aligned_cols=274 Identities=19% Similarity=0.173 Sum_probs=176.2
Q ss_pred HHHHccCCceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchhcccc
Q 048758 337 QMLLNHLPRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKDMGNL 414 (777)
Q Consensus 337 ~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~L 414 (777)
+..|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.++.+|.. +.++++|++|++++|......|..+.++
T Consensus 49 ~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 127 (477)
T 2id5_A 49 QDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL 127 (477)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred HhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccc
Confidence 345788999999999999 66664 78899999999999999999998865 6899999999999994434446678999
Q ss_pred CcccEEecCCccccccc-CcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCccc
Q 048758 415 TKLRHLKNSNVHSLEEM-PKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKV 493 (777)
Q Consensus 415 ~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~ 493 (777)
++|++|++++|. +..+ |..++.+++|++|.+..+.. .......+..++
T Consensus 128 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l------------------------------~~~~~~~l~~l~ 176 (477)
T 2id5_A 128 YNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNL------------------------------TSIPTEALSHLH 176 (477)
T ss_dssp TTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCC------------------------------SSCCHHHHTTCT
T ss_pred ccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcC------------------------------cccChhHhcccC
Confidence 999999999998 4444 45678888888775433211 111223345566
Q ss_pred ccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCC-CCCCcccCCCCCCCeeEEEEeCCCCCCCCC--CCCCC
Q 048758 494 NLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSG-TKFPIWLGDSSFSKLVQLKLEGCGKCTSLP--SVGQL 570 (777)
Q Consensus 494 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~~~~l 570 (777)
+|+.|++..+... ......+..+++|+.|+++++.. ..+|.... ...+|+.|++++|. ++.+| .++.+
T Consensus 177 ~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~-l~~~~~~~~~~l 247 (477)
T 2id5_A 177 GLIVLRLRHLNIN------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITHCN-LTAVPYLAVRHL 247 (477)
T ss_dssp TCCEEEEESCCCC------EECTTCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEESSC-CCSCCHHHHTTC
T ss_pred CCcEEeCCCCcCc------EeChhhcccCcccceeeCCCCccccccCcccc--cCccccEEECcCCc-ccccCHHHhcCc
Confidence 7777777654211 11223456667788888877654 33443333 24478888888775 34555 46677
Q ss_pred CCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--Cc-cccc
Q 048758 571 PFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QL-LVTI 647 (777)
Q Consensus 571 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l-~~~~ 647 (777)
++|++|+|++|.. ..++...+. .+++|+.|+++++.- ..+. ......+++|+.|++++|. .+ +..+
T Consensus 248 ~~L~~L~Ls~n~l-~~~~~~~~~-----~l~~L~~L~L~~n~l-~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 248 VYLRFLNLSYNPI-STIEGSMLH-----ELLRLQEIQLVGGQL-AVVE----PYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp TTCCEEECCSSCC-CEECTTSCT-----TCTTCCEEECCSSCC-SEEC----TTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred cccCeeECCCCcC-CccChhhcc-----ccccCCEEECCCCcc-ceEC----HHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 7788888877653 333322221 266777777776531 1111 1111345666666666663 12 2234
Q ss_pred CCCCCccEEEEcCCC
Q 048758 648 QCLPALSELQIDGCK 662 (777)
Q Consensus 648 ~~l~~L~~L~l~~~~ 662 (777)
..+++|++|++++|+
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 555666666666654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.4e-19 Score=188.84 Aligned_cols=93 Identities=27% Similarity=0.431 Sum_probs=64.9
Q ss_pred ceeEEeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCcccc-chhccccCcccEEec
Q 048758 345 RLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHLKN 422 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~~L~~L~l 422 (777)
++++++++++ .+..+|..+. ++|++|++++|.++.+|. .++++++|++|++++| .+..+ |..++++++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 5677777776 6777776553 577888888888777665 5777888888888877 45544 666777888888888
Q ss_pred CCcccccccCcccccccCCccc
Q 048758 423 SNVHSLEEMPKGFGKLTSLLTL 444 (777)
Q Consensus 423 ~~~~~~~~~p~~~~~l~~L~~L 444 (777)
++|. ++.+|..+. ++|++|
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQEL 126 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEE
T ss_pred CCCc-CCccChhhc--ccccEE
Confidence 8777 666665443 344444
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.2e-19 Score=189.40 Aligned_cols=93 Identities=30% Similarity=0.436 Sum_probs=65.2
Q ss_pred ceeEEeecCccCccccCccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCcccc-chhccccCcccEEec
Q 048758 345 RLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHLKN 422 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~~L~~L~l 422 (777)
++++++++++ .+..+|..+. ++|++|++++|.++.++ ..+.++++|++|++++| .+..+ |..++++++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 5677777776 6777776653 57788888888777664 36777888888888877 45544 566777888888888
Q ss_pred CCcccccccCcccccccCCccc
Q 048758 423 SNVHSLEEMPKGFGKLTSLLTL 444 (777)
Q Consensus 423 ~~~~~~~~~p~~~~~l~~L~~L 444 (777)
++|. +..+|..+. ++|++|
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEE
T ss_pred CCCc-CCccCcccc--ccCCEE
Confidence 8777 666665543 455555
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.4e-19 Score=187.94 Aligned_cols=82 Identities=18% Similarity=0.242 Sum_probs=74.0
Q ss_pred CcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcccccccCCcccC
Q 048758 366 NLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLG 445 (777)
Q Consensus 366 ~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 445 (777)
...+++.|++++|.++.+|..++++++|++|++++| .+..+|..++++++|++|++++|. +..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 357899999999999999999999999999999999 677999999999999999999998 778998899999998886
Q ss_pred cEEe
Q 048758 446 RFVV 449 (777)
Q Consensus 446 ~~~~ 449 (777)
+..+
T Consensus 157 L~~n 160 (328)
T 4fcg_A 157 IRAC 160 (328)
T ss_dssp EEEE
T ss_pred CCCC
Confidence 6544
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=8.6e-19 Score=195.79 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=72.2
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
.++++|++++| .+..+|..+. ++|++|++++|.++.+|. .+++|++|++++| .++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence 46899999988 7889998776 799999999999999987 5789999999999 7888887 78999999999
Q ss_pred CcccccccCcccccccCCccc
Q 048758 424 NVHSLEEMPKGFGKLTSLLTL 444 (777)
Q Consensus 424 ~~~~~~~~p~~~~~l~~L~~L 444 (777)
+|. +..+|. .+++|+.|
T Consensus 110 ~N~-l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 110 SNP-LTHLPA---LPSGLCKL 126 (622)
T ss_dssp SCC-CCCCCC---CCTTCCEE
T ss_pred CCc-CCCCCC---CCCCcCEE
Confidence 987 666665 33444444
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.3e-21 Score=222.15 Aligned_cols=88 Identities=18% Similarity=0.183 Sum_probs=36.9
Q ss_pred HHHccCCceeEEeecCccCccc-cCccccC-c-CccCeeeccCCc-cc--ccchhhhccccCcEEeeCCCcCccc----c
Q 048758 338 MLLNHLPRLRVFSLRGYCNIFN-LPNEIGN-L-KHLRCLNLSRTR-IQ--ILPESINSLYNLHTILLEDCWKLKK----L 407 (777)
Q Consensus 338 ~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~-l-~~L~~L~L~~~~-i~--~lp~~i~~L~~L~~L~l~~~~~l~~----l 407 (777)
..+..+++|++|+|++| .+.. .+..+.. + .+|++|++++|. +. .++....++++|++|++++|..... +
T Consensus 106 ~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 106 EISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH
T ss_pred HHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH
Confidence 33445555555555555 2221 2222332 2 225555555543 11 2222233455555555555521111 2
Q ss_pred chhccccCcccEEecCCcc
Q 048758 408 CKDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 408 p~~~~~L~~L~~L~l~~~~ 426 (777)
+....++++|++|++++|.
T Consensus 185 ~~~~~~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTE 203 (592)
T ss_dssp HHHHHHCCCCCEEECTTCC
T ss_pred HHHHhcCCCccEEEeeccC
Confidence 2223344555555555544
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.9e-20 Score=212.58 Aligned_cols=327 Identities=13% Similarity=0.080 Sum_probs=171.5
Q ss_pred cCCCccEEeeCcccCCCCchhhHHHHHHHHccCCc-eeEEeecCccCccc--cCccccCcCccCeeeccCCcccc-----
Q 048758 311 DVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPR-LRVFSLRGYCNIFN--LPNEIGNLKHLRCLNLSRTRIQI----- 382 (777)
Q Consensus 311 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~~i~~----- 382 (777)
.+++|+.|.+.. +.+....+..+...++. |++|+|++|..+.. ++..+.++++|++|+|++|.+..
T Consensus 110 ~~~~L~~L~L~~------~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 110 NLRQLKSVHFRR------MIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HCTTCCEEEEES------CBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred hCCCCCeEEeec------cEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 677777774433 33333333332222444 88888887753322 33334577888888888887652
Q ss_pred cchhhhccccCcEEeeCCCcCc----cccchhccccCcccEEecCCcccccccCcccccccCCcccCcEEecCC--CCCC
Q 048758 383 LPESINSLYNLHTILLEDCWKL----KKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKD--SGSG 456 (777)
Q Consensus 383 lp~~i~~L~~L~~L~l~~~~~l----~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~--~~~~ 456 (777)
++.....+++|++|++++|... ..++..+.++++|++|++++|. +..+|..++.+++|++|.+...... ....
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 3344566788888888877322 3445556678888888888877 6667777777788887755422111 1122
Q ss_pred ccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCC
Q 048758 457 LRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGT 536 (777)
Q Consensus 457 ~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 536 (777)
...+..+..|. .+.+... .....+..+..+++|+.|+++++. . ........+..+++|+.|++.++...
T Consensus 263 ~~~l~~~~~L~-~L~l~~~-----~~~~l~~~~~~~~~L~~L~Ls~~~-l----~~~~~~~~~~~~~~L~~L~L~~~~~~ 331 (592)
T 3ogk_B 263 YMNLVFPRKLC-RLGLSYM-----GPNEMPILFPFAAQIRKLDLLYAL-L----ETEDHCTLIQKCPNLEVLETRNVIGD 331 (592)
T ss_dssp SSCCCCCTTCC-EEEETTC-----CTTTGGGGGGGGGGCCEEEETTCC-C----CHHHHHHHHTTCTTCCEEEEEGGGHH
T ss_pred HHHhhcccccc-ccCcccc-----chhHHHHHHhhcCCCcEEecCCCc-C----CHHHHHHHHHhCcCCCEEeccCccCH
Confidence 23333334443 3333321 122344456667788888887653 1 11122233566778888888733211
Q ss_pred -CCCcccCCCCCCCeeEEEEeC----------CCCCCC--CCC-CCCCCCcceeeecCCCCceEeCcccccCCCCCCCCC
Q 048758 537 -KFPIWLGDSSFSKLVQLKLEG----------CGKCTS--LPS-VGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPS 602 (777)
Q Consensus 537 -~~p~~~~~~~l~~L~~L~L~~----------~~~~~~--l~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 602 (777)
.++.... .+++|++|++.+ |..++. ++. ...+++|++|+++ |..++........ ..+++
T Consensus 332 ~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~l~----~~~~~ 404 (592)
T 3ogk_B 332 RGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLESIG----TYLKN 404 (592)
T ss_dssp HHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHHHH----HHCCS
T ss_pred HHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHHHH----hhCCC
Confidence 1222222 467788888884 554442 111 2346777777773 3333221111110 01566
Q ss_pred CceeeccCc---cchhhhhc-cccCCCCCCCCCccEEEEecCCC-c-----ccccCCCCCccEEEEcCCC
Q 048758 603 LEALSFSDM---TEWEEWIP-CGAGTLPRRLLLLETLDITSCDQ-L-----LVTIQCLPALSELQIDGCK 662 (777)
Q Consensus 603 L~~L~l~~~---~~l~~~~~-~~~~~~~~~l~~L~~L~l~~c~~-l-----~~~~~~l~~L~~L~l~~~~ 662 (777)
|+.|+++++ ..+..... .....+...+++|++|++++|.. + ......+++|++|++++|+
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 777777632 22221000 00000112356666666666542 1 1112235666666666654
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=2.1e-19 Score=185.36 Aligned_cols=108 Identities=18% Similarity=0.285 Sum_probs=72.1
Q ss_pred HHHccCCceeEEeecC-ccCccccCccccCcCccCeeeccCCccc-ccchhhhccccCcEEeeCCCcCccccchhccccC
Q 048758 338 MLLNHLPRLRVFSLRG-YCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLT 415 (777)
Q Consensus 338 ~~~~~l~~L~~L~L~~-~~~l~~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~ 415 (777)
..+.++++|++|++++ |.....+|..++++++|++|++++|.++ .+|..+.++++|++|++++|.....+|..+++++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 3466777777777774 5333356777777777777777777776 6677777777777777777733336666677777
Q ss_pred cccEEecCCcccccccCccccccc-CCcccC
Q 048758 416 KLRHLKNSNVHSLEEMPKGFGKLT-SLLTLG 445 (777)
Q Consensus 416 ~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~ 445 (777)
+|++|++++|.....+|..++.+. +|+.|+
T Consensus 150 ~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp TCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred CCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 777777777763336666666665 566553
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=1.5e-19 Score=186.50 Aligned_cols=149 Identities=17% Similarity=0.229 Sum_probs=80.4
Q ss_pred ccceEEEEEeCcCCCC-cchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCcc-ccCcccc
Q 048758 288 QSLRHFSYIRGQYDGD-TRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIF-NLPNEIG 365 (777)
Q Consensus 288 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~ 365 (777)
.+++.+.+.++..... .....+..+++|+.|.+.+. +.+. ...+..+.++++|++|++++| .+. .+|..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~-----n~l~-~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-----NNLV-GPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-----TTEE-SCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC-----Cccc-ccCChhHhcCCCCCEEECcCC-eeCCcCCHHHh
Confidence 3455555555544321 11234556666666643310 1111 112333566666666666666 333 5666666
Q ss_pred CcCccCeeeccCCccc-ccchhhhccccCcEEeeCCCcCccccchhccccC-cccEEecCCcccccccCcccccccCCcc
Q 048758 366 NLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLT-KLRHLKNSNVHSLEEMPKGFGKLTSLLT 443 (777)
Q Consensus 366 ~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~-~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 443 (777)
++++|++|++++|.++ .+|..+..+++|++|++++|.....+|..+++++ +|++|++++|.....+|..++.+. |+.
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 6666666666666666 5566666666666666666632235666666665 666666666663334555555443 444
Q ss_pred c
Q 048758 444 L 444 (777)
Q Consensus 444 L 444 (777)
|
T Consensus 202 L 202 (313)
T 1ogq_A 202 V 202 (313)
T ss_dssp E
T ss_pred E
Confidence 4
No 54
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=4.7e-21 Score=217.72 Aligned_cols=424 Identities=15% Similarity=0.106 Sum_probs=197.4
Q ss_pred hhhccCCCccEEeeCcccCCCCc--------hhhHHHHHHHHccCCceeEEeecCccCccc-cCcccc-CcCccCeeecc
Q 048758 307 EFICDVQHLRTFLPMKLSDFGDN--------YLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEIG-NLKHLRCLNLS 376 (777)
Q Consensus 307 ~~~~~~~~l~~l~~~~~~~~~~~--------~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~-~l~~L~~L~L~ 376 (777)
..+..+++++.+...+...+... ......+...+..+++|++|+|++|. +.. .+..+. .+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCC
Confidence 44567788888866543211100 01122344556778899999999884 433 344454 68899999999
Q ss_pred CC-cccc--cchhhhccccCcEEeeCCCcCccc-----cchhccccCcccEEecCCcc-cc--cccCcccccccCCcccC
Q 048758 377 RT-RIQI--LPESINSLYNLHTILLEDCWKLKK-----LCKDMGNLTKLRHLKNSNVH-SL--EEMPKGFGKLTSLLTLG 445 (777)
Q Consensus 377 ~~-~i~~--lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~~~L~~L~~L~l~~~~-~~--~~~p~~~~~l~~L~~L~ 445 (777)
+| .++. ++..+.++++|++|++++|. +.. ++.....+++|++|++++|. .+ ..++.-+..+++|++|+
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEE
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEe
Confidence 88 5553 55566688999999999884 332 33333467789999998875 11 11111234457777775
Q ss_pred cEEecCCCCCCccccccccccCCcEEEccccc-cC-CcccchhhccCcccccccce-EeeccCCCccchHHHhcccCCCC
Q 048758 446 RFVVGKDSGSGLRQLKSLAHLQGRLKISKLEN-VK-DVGDASEAQLNNKVNLEALI-LEWSARSERCEFETQVLSMLKPH 522 (777)
Q Consensus 446 ~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~-~~-~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~~~~l~~~ 522 (777)
+..+..... ....+..+.+|. .+.+..... .. .........+.++++|+.+. +... ........+..+
T Consensus 218 L~~~~~~~~-l~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~-------~~~~l~~~~~~~ 288 (594)
T 2p1m_B 218 LNRAVPLEK-LATLLQRAPQLE-ELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA-------VPAYLPAVYSVC 288 (594)
T ss_dssp CCTTSCHHH-HHHHHHHCTTCS-EEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTC-------CGGGGGGGHHHH
T ss_pred cCCCCcHHH-HHHHHhcCCcce-EcccccccCccchhhHHHHHHHHhcCCCcccccCCccc-------chhhHHHHHHhh
Confidence 432211000 001111222222 222221110 00 00001122344455555552 1100 001111111234
Q ss_pred CCCCeEEEeecCCCC--CCcccCCCCCCCeeEEEEeCCCCCCCCCC-CCCCCCcceeeecCC--------CCceEeCccc
Q 048758 523 RDVQELTITGYSGTK--FPIWLGDSSFSKLVQLKLEGCGKCTSLPS-VGQLPFLKELLISGM--------DGVKIVGLEF 591 (777)
Q Consensus 523 ~~L~~L~l~~~~~~~--~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-~~~l~~L~~L~L~~~--------~~l~~~~~~~ 591 (777)
++|++|++++|.+.. ++..+. .+++|+.|++.+|.....++. ...+++|++|++.+| ..++..+...
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~--~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLC--QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHT--TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHh--cCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 566777766665321 111122 466677777766611111221 123566677766432 2222111000
Q ss_pred ccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEe-----cCCCcc---------cccCCCCCccEEE
Q 048758 592 YGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDIT-----SCDQLL---------VTIQCLPALSELQ 657 (777)
Q Consensus 592 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~-----~c~~l~---------~~~~~l~~L~~L~ 657 (777)
.. ..+++|+.|.+. +..+..... ..+...+++|+.|+++ +|..+. ..+..+++|++|+
T Consensus 367 l~----~~~~~L~~L~~~-~~~l~~~~~---~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~ 438 (594)
T 2p1m_B 367 VS----MGCPKLESVLYF-CRQMTNAAL---ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS 438 (594)
T ss_dssp HH----HHCTTCCEEEEE-ESCCCHHHH---HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred HH----HhchhHHHHHHh-cCCcCHHHH---HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence 00 015666666443 222211100 0011235667777777 454443 1134566777777
Q ss_pred EcCCCCcc-------cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccE
Q 048758 658 IDGCKRVV-------FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQF 730 (777)
Q Consensus 658 l~~~~~l~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~ 730 (777)
+++ .+. ....++|+.|++++|.............+++|++|++++|+. ....... . ...+ ++|++
T Consensus 439 L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~-~---~~~l-~~L~~ 510 (594)
T 2p1m_B 439 LSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLA-N---ASKL-ETMRS 510 (594)
T ss_dssp CCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHH-T---GGGG-GGSSE
T ss_pred ecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHH-H---HHhC-CCCCE
Confidence 755 222 112466777777666532211111223456777777777643 2111000 0 0112 56777
Q ss_pred EeeecCCCCCCchhhc-CCCCCccEEEecC
Q 048758 731 LELRNCEGLTRLPQAL-LTLSSLTEMRIYG 759 (777)
Q Consensus 731 L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~ 759 (777)
|++++|+....-...+ ..+|+|+...+..
T Consensus 511 L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 511 LWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp EEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred EeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 7777765411111112 3456665555443
No 55
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.77 E-value=1.9e-20 Score=205.46 Aligned_cols=290 Identities=19% Similarity=0.154 Sum_probs=153.9
Q ss_pred chhhHHHHHHHHccCCceeEEeecCccCcc-----ccCccccCcCccCeeeccCCccccc-chhh-hccc----cCcEEe
Q 048758 329 NYLAWSALQMLLNHLPRLRVFSLRGYCNIF-----NLPNEIGNLKHLRCLNLSRTRIQIL-PESI-NSLY----NLHTIL 397 (777)
Q Consensus 329 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i-~~L~----~L~~L~ 397 (777)
+.+........+..+++|++|++++| .+. .++..+..+++|++|++++|.+... +..+ ..+. +|++|+
T Consensus 13 ~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 13 EELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp CCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred cccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEE
Confidence 33434445555677777788888777 454 3456667777788888877777632 2222 2344 577888
Q ss_pred eCCCcCcc-----ccchhccccCcccEEecCCcccccc-cCccc-----ccccCCcccCcEEecCCCCCCcccccccccc
Q 048758 398 LEDCWKLK-----KLCKDMGNLTKLRHLKNSNVHSLEE-MPKGF-----GKLTSLLTLGRFVVGKDSGSGLRQLKSLAHL 466 (777)
Q Consensus 398 l~~~~~l~-----~lp~~~~~L~~L~~L~l~~~~~~~~-~p~~~-----~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 466 (777)
+++| .+. .+|..+.++++|++|++++|. +.. .+..+ ...++|++|++..+..
T Consensus 92 L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l--------------- 154 (461)
T 1z7x_W 92 LQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSL--------------- 154 (461)
T ss_dssp CTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC---------------
T ss_pred ccCC-CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCC---------------
Confidence 8777 443 456667777788888887776 332 11111 1123444443211100
Q ss_pred CCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccC----C-CCCCCCeEEEeecCCCC----
Q 048758 467 QGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSML----K-PHRDVQELTITGYSGTK---- 537 (777)
Q Consensus 467 ~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l----~-~~~~L~~L~l~~~~~~~---- 537 (777)
...........+..+++|+.|+++.+. ........+ . ..++|+.|++++|.+..
T Consensus 155 -----------~~~~~~~l~~~l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 155 -----------SAASCEPLASVLRAKPDFKELTVSNND------INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp -----------BGGGHHHHHHHHHHCTTCCEEECCSSB------CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred -----------CHHHHHHHHHHHhhCCCCCEEECcCCC------cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 000011223334455677777776542 111111111 1 24578888888877654
Q ss_pred -CCcccCCCCCCCeeEEEEeCCCCCCC----C-C-CCCCCCCcceeeecCCCCceE-----eCcccccCCCCCCCCCCce
Q 048758 538 -FPIWLGDSSFSKLVQLKLEGCGKCTS----L-P-SVGQLPFLKELLISGMDGVKI-----VGLEFYGNICSVPFPSLEA 605 (777)
Q Consensus 538 -~p~~~~~~~l~~L~~L~L~~~~~~~~----l-~-~~~~l~~L~~L~L~~~~~l~~-----~~~~~~~~~~~~~~~~L~~ 605 (777)
++..+. .+++|++|++++|..... + + ....+++|++|++++|. ++. ++..+.. +++|+.
T Consensus 218 ~l~~~l~--~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~------~~~L~~ 288 (461)
T 1z7x_W 218 DLCGIVA--SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRA------KESLKE 288 (461)
T ss_dssp HHHHHHH--HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHH------CTTCCE
T ss_pred HHHHHHH--hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhh------CCCcce
Confidence 233333 467788888887753211 1 1 12346778888888773 332 1111111 577777
Q ss_pred eeccCccchhhhhccccCCCCCCCCCccEEEEecCCC-------cccccCCCCCccEEEEcCCC
Q 048758 606 LSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ-------LLVTIQCLPALSELQIDGCK 662 (777)
Q Consensus 606 L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~-------l~~~~~~l~~L~~L~l~~~~ 662 (777)
|+++++.--..........+....++|++|++++|.- ++..+..+++|++|++++|.
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 7777764211100000011122345777777777752 23445556777777777764
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=7.6e-18 Score=175.62 Aligned_cols=267 Identities=17% Similarity=0.196 Sum_probs=146.1
Q ss_pred CceeEEeecCccCccccCc-cccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccchhccccCcccEEe
Q 048758 344 PRLRVFSLRGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLK 421 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~ 421 (777)
++|++|++++| .+..+|. .++++++|++|++++|.++.+ |..++++++|++|++++| .+..+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 46777888777 5666554 577778888888888877765 667777788888888777 6667776554 6778888
Q ss_pred cCCcccccccCc-ccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceE
Q 048758 422 NSNVHSLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALIL 500 (777)
Q Consensus 422 l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 500 (777)
+++|. +..++. .++++++|++|++..+.... ....+..+..+++|+.|.+
T Consensus 128 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------------~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 128 VHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS----------------------------SGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp CCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG----------------------------GGBCTTGGGGCTTCCEEEC
T ss_pred CCCCc-ccccCHhHhcCCccccEEECCCCcCCc----------------------------cCcChhhccCCCCcCEEEC
Confidence 87777 555543 36667777766443222110 0011122333445555555
Q ss_pred eeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCC-CcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeee
Q 048758 501 EWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKF-PIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLI 578 (777)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L 578 (777)
+.+.... .... ..++|+.|++++|.+..+ |..+. .+++|+.|++++|......+ .++.+++|++|++
T Consensus 179 ~~n~l~~-------l~~~--~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 179 ADTNITT-------IPQG--LPPSLTELHLDGNKITKVDAASLK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp CSSCCCS-------CCSS--CCTTCSEEECTTSCCCEECTGGGT--TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred CCCcccc-------CCcc--ccccCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCceeChhhccCCCCCCEEEC
Confidence 4332110 0011 125566666666665444 23333 45666666666665333222 4555666666666
Q ss_pred cCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCC--CCCCCCCccEEEEecCCCc-----ccccCCCC
Q 048758 579 SGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGT--LPRRLLLLETLDITSCDQL-----LVTIQCLP 651 (777)
Q Consensus 579 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~l~~L~~L~l~~c~~l-----~~~~~~l~ 651 (777)
++|. +..++..+.. +++|+.|++++++ +..+....... .....+.++.|++++++.. +..+..++
T Consensus 248 ~~N~-l~~lp~~l~~------l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 248 NNNK-LVKVPGGLAD------HKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp CSSC-CSSCCTTTTT------CSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCc-CccCChhhcc------CCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 6653 3333332221 5666666666553 11111000000 0112467777888777631 45677788
Q ss_pred CccEEEEcCCC
Q 048758 652 ALSELQIDGCK 662 (777)
Q Consensus 652 ~L~~L~l~~~~ 662 (777)
+|+.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 88888888763
No 57
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=6.9e-18 Score=176.06 Aligned_cols=99 Identities=20% Similarity=0.390 Sum_probs=65.7
Q ss_pred CceeEEeecCccCcccc-CccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccchhccccCcccEEe
Q 048758 344 PRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLK 421 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~ 421 (777)
++|++|++++| .+..+ |..++++++|++|++++|.++.+ |..++++++|++|++++| .+..+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEE
Confidence 46777777776 45554 34667777777777777777755 556777777777777777 5666666554 6777777
Q ss_pred cCCcccccccCcc-cccccCCcccCcE
Q 048758 422 NSNVHSLEEMPKG-FGKLTSLLTLGRF 447 (777)
Q Consensus 422 l~~~~~~~~~p~~-~~~l~~L~~L~~~ 447 (777)
+++|. +..+|.. ++.+++|++|++.
T Consensus 130 l~~n~-i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 130 IHDNR-IRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp CCSSC-CCCCCSGGGSSCSSCCEEECC
T ss_pred CCCCc-cCccCHhHhCCCccCCEEECC
Confidence 77776 5555543 6666666666443
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.8e-17 Score=174.45 Aligned_cols=97 Identities=22% Similarity=0.340 Sum_probs=67.9
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccc-hhccccCcccEE
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRHL 420 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L 420 (777)
++...+.+++++ .++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++| .+..++ ..++++++|++|
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEE
Confidence 444455677766 7777887654 478888888888887766 6788888888888888 555553 457788888888
Q ss_pred ecCCcccccccCcc-cccccCCccc
Q 048758 421 KNSNVHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 421 ~l~~~~~~~~~p~~-~~~l~~L~~L 444 (777)
++++|. +..+|.. ++++++|++|
T Consensus 106 ~Ls~n~-l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 106 DLSYNY-LSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp ECCSSC-CSSCCHHHHTTCTTCSEE
T ss_pred ECCCCc-CCcCCHhHhCCCccCCEE
Confidence 888877 5555544 4555555544
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=9.9e-20 Score=199.83 Aligned_cols=155 Identities=13% Similarity=0.129 Sum_probs=101.0
Q ss_pred ccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-cCccc-c
Q 048758 288 QSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEI-G 365 (777)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i-~ 365 (777)
..++.+.+..+..........+..+++++.+.+.... + .......++..+..+++|++|+|++| .+.. .+..+ .
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l--~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-L--TEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-C--CHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-C--CHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHH
Confidence 4566677766654443333446778888888544321 1 11123356677888899999999988 4544 22223 2
Q ss_pred CcC----ccCeeeccCCccc-----ccchhhhccccCcEEeeCCCcCcccc-chhc-----cccCcccEEecCCcccccc
Q 048758 366 NLK----HLRCLNLSRTRIQ-----ILPESINSLYNLHTILLEDCWKLKKL-CKDM-----GNLTKLRHLKNSNVHSLEE 430 (777)
Q Consensus 366 ~l~----~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~~-----~~L~~L~~L~l~~~~~~~~ 430 (777)
.+. +|++|++++|.++ .+|..+..+++|++|++++|. +... +..+ ...++|++|++++|. +..
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~ 156 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSA 156 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCH
Confidence 344 6999999999887 457788899999999999984 4322 2222 235679999999987 433
Q ss_pred -----cCcccccccCCcccCcEE
Q 048758 431 -----MPKGFGKLTSLLTLGRFV 448 (777)
Q Consensus 431 -----~p~~~~~l~~L~~L~~~~ 448 (777)
++..+..+++|++|++..
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHHHhhCCCCCEEECcC
Confidence 344566677888775543
No 60
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=3.4e-20 Score=210.63 Aligned_cols=373 Identities=15% Similarity=0.129 Sum_probs=224.8
Q ss_pred ccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc--cCccccCcCccCeeeccCCcccc-----
Q 048758 310 CDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN--LPNEIGNLKHLRCLNLSRTRIQI----- 382 (777)
Q Consensus 310 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~~i~~----- 382 (777)
..+++|+.|.+.. +.+....+..+...+++|++|+|++|..+.. ++..+.++++|++|++++|.++.
T Consensus 102 ~~~~~L~~L~L~~------~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~ 175 (594)
T 2p1m_B 102 SSYTWLEEIRLKR------MVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW 175 (594)
T ss_dssp HHCTTCCEEEEES------CBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGG
T ss_pred HhCCCCCeEEeeC------cEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHH
Confidence 4677888884433 3344555555555788999999998865554 55555688999999999988663
Q ss_pred cchhhhccccCcEEeeCCCc-Cc--cccchhccccCcccEEecCCcccccccCcccccccCCcccCcEEecCC-CCC---
Q 048758 383 LPESINSLYNLHTILLEDCW-KL--KKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKD-SGS--- 455 (777)
Q Consensus 383 lp~~i~~L~~L~~L~l~~~~-~l--~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~-~~~--- 455 (777)
++.....+++|++|++++|. .+ ..++..+.++++|++|++++|..+..+|..+..+++|++|++...... ...
T Consensus 176 l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 33333467799999999884 11 223333456789999999988656677777788888888754322110 000
Q ss_pred -CccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecC
Q 048758 456 -GLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYS 534 (777)
Q Consensus 456 -~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 534 (777)
....+.+++.|. .+ ..+... .....+..+..+++|+.|+++++. .. .......+..+++|+.|++.++.
T Consensus 256 ~l~~~l~~~~~L~-~L--s~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~-l~----~~~l~~~~~~~~~L~~L~l~~~~ 325 (594)
T 2p1m_B 256 GLSVALSGCKELR-CL--SGFWDA--VPAYLPAVYSVCSRLTTLNLSYAT-VQ----SYDLVKLLCQCPKLQRLWVLDYI 325 (594)
T ss_dssp HHHHHHHTCTTCC-EE--ECCBTC--CGGGGGGGHHHHTTCCEEECTTCC-CC----HHHHHHHHTTCTTCCEEEEEGGG
T ss_pred HHHHHHhcCCCcc-cc--cCCccc--chhhHHHHHHhhCCCCEEEccCCC-CC----HHHHHHHHhcCCCcCEEeCcCcc
Confidence 001122223232 11 111111 112333444567899999998764 11 12223335677999999999882
Q ss_pred CC-CCCcccCCCCCCCeeEEEEeCC--------CCCCC--CCCC-CCCCCcceeeecCCCCceEeCcccccCCCCCCCCC
Q 048758 535 GT-KFPIWLGDSSFSKLVQLKLEGC--------GKCTS--LPSV-GQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPS 602 (777)
Q Consensus 535 ~~-~~p~~~~~~~l~~L~~L~L~~~--------~~~~~--l~~~-~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 602 (777)
.. .++.... .+++|+.|++.+| ..++. +..+ ..+++|++|.+.. ..++..+..... ..+|+
T Consensus 326 ~~~~l~~l~~--~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~----~~~~~ 398 (594)
T 2p1m_B 326 EDAGLEVLAS--TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIA----RNRPN 398 (594)
T ss_dssp HHHHHHHHHH--HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHH----HHCTT
T ss_pred CHHHHHHHHH--hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHH----hhCCC
Confidence 21 1122222 4789999999654 22221 1111 2478999996654 444322211111 12799
Q ss_pred Cceeecc-----Cccchhhhh-ccccCCCCCCCCCccEEEEecCCCcc----cccC-CCCCccEEEEcCCCCcc------
Q 048758 603 LEALSFS-----DMTEWEEWI-PCGAGTLPRRLLLLETLDITSCDQLL----VTIQ-CLPALSELQIDGCKRVV------ 665 (777)
Q Consensus 603 L~~L~l~-----~~~~l~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~----~~~~-~l~~L~~L~l~~~~~l~------ 665 (777)
|+.|+++ +|..+.... ......+...+++|++|++++ .+. ..+. .+++|++|++++|..-.
T Consensus 399 L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 476 (594)
T 2p1m_B 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476 (594)
T ss_dssp CCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred cceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence 9999999 454444110 000001123478999999976 332 2222 48999999999998422
Q ss_pred cCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCC
Q 048758 666 FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQ 707 (777)
Q Consensus 666 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 707 (777)
...++.|+.|++++|.............+++|++|++++|+.
T Consensus 477 ~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 144799999999999873222333455689999999999965
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=6.6e-18 Score=174.68 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=27.6
Q ss_pred CcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcc
Q 048758 366 NLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 366 ~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~ 426 (777)
.+++|++|++++|.++.++ ..+.++++|++|++++| .+..++. +..+++|++|++++|.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNY 91 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCc
Confidence 3444555555555544333 34445555555555554 3333322 4455555555555444
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=172.84 Aligned_cols=249 Identities=17% Similarity=0.135 Sum_probs=151.2
Q ss_pred CceeEEeecCccCccccCc-cccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccchh-ccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L 420 (777)
++|++|++++| .+..+|. .++++++|++|++++|.++.++ ..++++++|++|++++| .+..+|.. ++++++|++|
T Consensus 52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEE
Confidence 57999999988 6777765 7899999999999999999775 56899999999999999 77778766 8899999999
Q ss_pred ecCCcccccccCc--ccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccc
Q 048758 421 KNSNVHSLEEMPK--GFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEAL 498 (777)
Q Consensus 421 ~l~~~~~~~~~p~--~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 498 (777)
++++|. +..+|. .++.+++|++|++..+... ....+..+..+++|+.|
T Consensus 130 ~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~-----------------------------~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 130 NLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTF-----------------------------TKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp ECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTTTTCCEEEEE
T ss_pred ECCCCC-CcccCchhhhccCCCCcEEECCCCccc-----------------------------cccCHHHccCCCCCCEE
Confidence 999998 777776 5777888887755443210 01112223444555666
Q ss_pred eEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC----CCCCCCCcc
Q 048758 499 ILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP----SVGQLPFLK 574 (777)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~----~~~~l~~L~ 574 (777)
+++.+.. .......+..+++|+.|++++|.+..+|..+.. .+++|+.|++++|......+ .....+.++
T Consensus 180 ~l~~n~l------~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 180 EIDASDL------QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD-VTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp EEEETTC------CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHH-HTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred ECCCCCc------CccCHHHHhccccCCeecCCCCccccchhhhhh-hcccccEEECCCCccccccccccccccccchhh
Confidence 6654421 111223444555666666666665554443221 25566666666654322111 111223333
Q ss_pred eeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--Ccccc-cCCCC
Q 048758 575 ELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QLLVT-IQCLP 651 (777)
Q Consensus 575 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~-~~~l~ 651 (777)
.++++++. +.++ .+..+.. ....+++|+.|++++|. .+|.. +..++
T Consensus 253 ~l~L~~~~-------------------------l~~~-~l~~l~~-----~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 301 (353)
T 2z80_A 253 KFTFRNVK-------------------------ITDE-SLFQVMK-----LLNQISGLLELEFSRNQLKSVPDGIFDRLT 301 (353)
T ss_dssp EEEEESCB-------------------------CCHH-HHHHHHH-----HHHTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cccccccc-------------------------ccCc-chhhhHH-----HHhcccCCCEEECCCCCCCccCHHHHhcCC
Confidence 33333321 0000 0000000 00235677777777774 34444 46788
Q ss_pred CccEEEEcCCC
Q 048758 652 ALSELQIDGCK 662 (777)
Q Consensus 652 ~L~~L~l~~~~ 662 (777)
+|++|++++|+
T Consensus 302 ~L~~L~L~~N~ 312 (353)
T 2z80_A 302 SLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 88888888886
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.3e-16 Score=174.04 Aligned_cols=100 Identities=30% Similarity=0.412 Sum_probs=77.0
Q ss_pred CceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccchh-ccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L 420 (777)
+++++|+|++| .+..+ |..|+++++|++|+|++|.++.++ ..+.++++|++|++++| .+..+|.. +.++++|++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence 57888899888 55554 667888889999999988888665 56888889999999888 67777654 7788889999
Q ss_pred ecCCcccccccCc-ccccccCCcccCc
Q 048758 421 KNSNVHSLEEMPK-GFGKLTSLLTLGR 446 (777)
Q Consensus 421 ~l~~~~~~~~~p~-~~~~l~~L~~L~~ 446 (777)
++++|. +..+|. .+.++++|+.|++
T Consensus 153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l 178 (452)
T 3zyi_A 153 WLRNNP-IESIPSYAFNRVPSLMRLDL 178 (452)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEEC
T ss_pred ECCCCC-cceeCHhHHhcCCcccEEeC
Confidence 998888 666654 4667777776643
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=4.4e-16 Score=173.96 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=68.1
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
++|++|++++| .+..+|. .+++|++|+|++|.++.+|. .+++|++|++++| .+..+|. .+++|+.|+++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECC
Confidence 68999999988 7888887 67899999999999999987 6899999999999 7888876 67899999999
Q ss_pred CcccccccCcc
Q 048758 424 NVHSLEEMPKG 434 (777)
Q Consensus 424 ~~~~~~~~p~~ 434 (777)
+|. +..+|..
T Consensus 130 ~N~-l~~lp~~ 139 (622)
T 3g06_A 130 GNQ-LTSLPVL 139 (622)
T ss_dssp SSC-CSCCCCC
T ss_pred CCC-CCcCCCC
Confidence 987 6666653
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=3.8e-17 Score=168.43 Aligned_cols=99 Identities=21% Similarity=0.264 Sum_probs=74.7
Q ss_pred CceeEEeecCccCccccCcc-ccCcCccCeeeccCCccccc---chhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 344 PRLRVFSLRGYCNIFNLPNE-IGNLKHLRCLNLSRTRIQIL---PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
++|++|++++| .+..+|.. ++++++|++|++++|.++.+ |..+..+++|++|++++| .+..+|..+.++++|++
T Consensus 28 ~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 57888888887 67777765 57888888888888887754 567777888888888888 67778777888888888
Q ss_pred EecCCcccccccCc--ccccccCCcccC
Q 048758 420 LKNSNVHSLEEMPK--GFGKLTSLLTLG 445 (777)
Q Consensus 420 L~l~~~~~~~~~p~--~~~~l~~L~~L~ 445 (777)
|++++|. +..++. .+..+++|++|+
T Consensus 106 L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 132 (306)
T 2z66_A 106 LDFQHSN-LKQMSEFSVFLSLRNLIYLD 132 (306)
T ss_dssp EECTTSE-EESSTTTTTTTTCTTCCEEE
T ss_pred EECCCCc-ccccccchhhhhccCCCEEE
Confidence 8888887 555543 466666666653
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=3e-16 Score=170.45 Aligned_cols=100 Identities=31% Similarity=0.444 Sum_probs=75.2
Q ss_pred CceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccch-hccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L 420 (777)
+++++|+|++| .+..++ ..|.++++|++|+|++|.++.++ ..+.++++|++|++++| .+..+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 56888888888 566544 67788888888888888888665 56778888888888888 6777765 47888888888
Q ss_pred ecCCcccccccCc-ccccccCCcccCc
Q 048758 421 KNSNVHSLEEMPK-GFGKLTSLLTLGR 446 (777)
Q Consensus 421 ~l~~~~~~~~~p~-~~~~l~~L~~L~~ 446 (777)
++++|. +..+|. .+..+++|++|++
T Consensus 142 ~L~~N~-i~~~~~~~~~~l~~L~~L~l 167 (440)
T 3zyj_A 142 WLRNNP-IESIPSYAFNRIPSLRRLDL 167 (440)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEEC
T ss_pred eCCCCc-ccccCHHHhhhCcccCEeCC
Confidence 888887 555554 4666777766633
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=3.7e-16 Score=170.29 Aligned_cols=96 Identities=22% Similarity=0.328 Sum_probs=79.0
Q ss_pred eeEEeecCccCccccCccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccc-hhccccCcccEEecC
Q 048758 346 LRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRHLKNS 423 (777)
Q Consensus 346 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L~l~ 423 (777)
.+.++.++. .+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|++++| .+..++ ..+.++++|++|+++
T Consensus 56 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRR-GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCC-CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECC
Confidence 456777766 7888997664 6899999999999976 567999999999999999 666665 568999999999999
Q ss_pred CcccccccCcc-cccccCCcccCc
Q 048758 424 NVHSLEEMPKG-FGKLTSLLTLGR 446 (777)
Q Consensus 424 ~~~~~~~~p~~-~~~l~~L~~L~~ 446 (777)
+|. +..+|.. ++.+++|++|++
T Consensus 132 ~n~-l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 132 DNW-LTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp SSC-CSBCCTTTSSSCTTCCEEEC
T ss_pred CCc-CCccChhhhcccCCCCEEEC
Confidence 998 7777755 777888888754
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=4.4e-16 Score=169.07 Aligned_cols=194 Identities=21% Similarity=0.206 Sum_probs=126.3
Q ss_pred eeEEeecCccCccccCccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccc-hhccccCcccEEecC
Q 048758 346 LRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRHLKNS 423 (777)
Q Consensus 346 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L~l~ 423 (777)
.+.++.++. .+..+|..+. .++++|+|++|.++.++ ..+.++++|++|++++| .+..++ ..+.++++|++|+++
T Consensus 45 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECC
Confidence 456777766 7888998765 68999999999999775 67899999999999999 666665 568999999999999
Q ss_pred CcccccccCc-ccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEee
Q 048758 424 NVHSLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEW 502 (777)
Q Consensus 424 ~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 502 (777)
+|. +..+|. .+..+++|++|++..+.. .......+..+++|+.|++..
T Consensus 121 ~n~-l~~~~~~~~~~l~~L~~L~L~~N~i------------------------------~~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 121 DNR-LTTIPNGAFVYLSKLKELWLRNNPI------------------------------ESIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp SSC-CSSCCTTTSCSCSSCCEEECCSCCC------------------------------CEECTTTTTTCTTCCEEECCC
T ss_pred CCc-CCeeCHhHhhccccCceeeCCCCcc------------------------------cccCHHHhhhCcccCEeCCCC
Confidence 998 777775 478888888875533211 011112244455566666553
Q ss_pred ccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeecCC
Q 048758 503 SARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLISGM 581 (777)
Q Consensus 503 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~ 581 (777)
+..... .....+..+++|+.|++++|.+..+|... .+++|+.|+|++|......+ .+..+++|++|++++|
T Consensus 170 ~~~l~~-----i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 170 LKRLSY-----ISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CTTCCE-----ECTTTTTTCSSCCEEECTTSCCSSCCCCT---TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCcce-----eCcchhhcccccCeecCCCCcCccccccC---CCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 221110 01123445566666666666666655422 35666666666664333223 4556666666666665
Q ss_pred C
Q 048758 582 D 582 (777)
Q Consensus 582 ~ 582 (777)
.
T Consensus 242 ~ 242 (440)
T 3zyj_A 242 Q 242 (440)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.66 E-value=1.5e-16 Score=163.92 Aligned_cols=106 Identities=21% Similarity=0.217 Sum_probs=76.7
Q ss_pred HHHHccCCceeEEeecCccCcccc---CccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccch--hc
Q 048758 337 QMLLNHLPRLRVFSLRGYCNIFNL---PNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCK--DM 411 (777)
Q Consensus 337 ~~~~~~l~~L~~L~L~~~~~l~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~--~~ 411 (777)
+..|.++++|++|++++| .+..+ |..+..+++|++|++++|.+..+|..+..+++|++|++++| .+..++. .+
T Consensus 45 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 122 (306)
T 2z66_A 45 HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVF 122 (306)
T ss_dssp TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTT
T ss_pred HhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC-cccccccchhh
Confidence 344677888888888877 55543 55666788888888888888888877888888888888888 6666653 57
Q ss_pred cccCcccEEecCCcccccccCcccccccCCccc
Q 048758 412 GNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTL 444 (777)
Q Consensus 412 ~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 444 (777)
.++++|++|++++|......|..++.+++|++|
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 788888888888887333344446666666665
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=2.1e-16 Score=162.99 Aligned_cols=83 Identities=19% Similarity=0.169 Sum_probs=62.9
Q ss_pred CCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCc
Q 048758 648 QCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCR 727 (777)
Q Consensus 648 ~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~ 727 (777)
..+++|++|++++|.... ..+...+..+++|++|++++| .++.+|... +++
T Consensus 225 ~~l~~L~~L~Ls~N~l~~-------------------~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~---------~~~ 275 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRD-------------------AAGAPSCDWPSQLNSLNLSFT-GLKQVPKGL---------PAK 275 (312)
T ss_dssp HTTCCCSEEECTTSCCCS-------------------SCCCSCCCCCTTCCEEECTTS-CCSSCCSSC---------CSE
T ss_pred hcCCCCCEEECCCCcCCc-------------------ccchhhhhhcCCCCEEECCCC-ccChhhhhc---------cCC
Confidence 466788888888875221 112234456799999999996 677776533 279
Q ss_pred ccEEeeecCCCCCCchhhcCCCCCccEEEecCCC
Q 048758 728 LQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCT 761 (777)
Q Consensus 728 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 761 (777)
|++|++++ +.++.+|. +..+++|++|++++++
T Consensus 276 L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 276 LSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp EEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred ceEEECCC-CCCCCChh-HhhCCCCCEEeccCCC
Confidence 99999999 58888887 8899999999999874
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=6.3e-16 Score=157.37 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=43.9
Q ss_pred CceeEEeecCccCccccC-ccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCcccc-chhccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~~L~~L 420 (777)
++|++|++++| .+..+| ..+.++++|++|++++|.++.+ |..+.++++|++|++++|..+..+ |..+.++++|++|
T Consensus 32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 45555556555 444433 3455555566666655555544 444555555556665555324444 3445555555555
Q ss_pred ecCCcc
Q 048758 421 KNSNVH 426 (777)
Q Consensus 421 ~l~~~~ 426 (777)
++++|.
T Consensus 111 ~l~~n~ 116 (285)
T 1ozn_A 111 HLDRCG 116 (285)
T ss_dssp ECTTSC
T ss_pred ECCCCc
Confidence 555555
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=4.8e-16 Score=170.23 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=24.7
Q ss_pred ceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCC
Q 048758 345 RLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDC 401 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~ 401 (777)
+|++|+|++| .+..+ |..|+.+++|++|+|++|.++..++ ++.+++|++|++++|
T Consensus 35 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 35 NVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (487)
T ss_dssp GCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS
T ss_pred CccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC
Confidence 4555555544 33332 2344444444444444444443332 444444444444444
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=2e-16 Score=163.52 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=80.6
Q ss_pred HHHHHHHHccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhc
Q 048758 333 WSALQMLLNHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDM 411 (777)
Q Consensus 333 ~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~ 411 (777)
...+...+..+++|++|+|++| .+..++ ..++++++|++|++++|.++.+++ +..+++|++|++++| .+..+|
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~--- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL--- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE---
T ss_pred hhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc---
Confidence 3445566778889999999998 676655 678999999999999999987765 889999999999999 677665
Q ss_pred cccCcccEEecCCcccccccCcccccccCCcccC
Q 048758 412 GNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLG 445 (777)
Q Consensus 412 ~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 445 (777)
..++|++|++++|. +..++.. .+++|++|+
T Consensus 97 -~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~ 126 (317)
T 3o53_A 97 -VGPSIETLHAANNN-ISRVSCS--RGQGKKNIY 126 (317)
T ss_dssp -ECTTCCEEECCSSC-CSEEEEC--CCSSCEEEE
T ss_pred -CCCCcCEEECCCCc-cCCcCcc--ccCCCCEEE
Confidence 34899999999988 5555432 244555553
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.8e-16 Score=163.50 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=67.7
Q ss_pred cCCceeEEeecCccCccccCccc--cCcCccCeeeccCCcccccchhhhcc-----ccCcEEeeCCCcCccccc-hhccc
Q 048758 342 HLPRLRVFSLRGYCNIFNLPNEI--GNLKHLRCLNLSRTRIQILPESINSL-----YNLHTILLEDCWKLKKLC-KDMGN 413 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp~~i--~~l~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp-~~~~~ 413 (777)
++++|++|++++|.....+|..+ +.+++|++|++++|.++.+|..++.+ ++|++|++++| .+..++ ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhcc
Confidence 57778888887773223567665 77777888888887777667777766 77788888777 455554 56777
Q ss_pred cCcccEEecCCcccccc--cCccc--ccccCCccc
Q 048758 414 LTKLRHLKNSNVHSLEE--MPKGF--GKLTSLLTL 444 (777)
Q Consensus 414 L~~L~~L~l~~~~~~~~--~p~~~--~~l~~L~~L 444 (777)
+++|++|++++|..... +|..+ +.+++|++|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 206 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE
Confidence 77788888777763322 22232 555555555
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=1.3e-15 Score=156.49 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=75.7
Q ss_pred ccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEE
Q 048758 341 NHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 420 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L 420 (777)
..+++|++|++++| .+..+| .+..+++|++|++++|.+..++. +..+++|++|++++| .+..++ .+.++++|++|
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEE
T ss_pred HHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEE
Confidence 34667888888887 677776 57888888888888888888877 888888888888888 577765 57888888888
Q ss_pred ecCCcccccccCcccccccCCcccCc
Q 048758 421 KNSNVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 421 ~l~~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
++++|. +..++. +..+++|++|++
T Consensus 113 ~l~~n~-l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 113 DLTSTQ-ITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp ECTTSC-CCCCGG-GTTCTTCCEEEC
T ss_pred ECCCCC-CCCchh-hcCCCCCCEEEC
Confidence 888887 565543 666666666533
No 76
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.61 E-value=1.4e-15 Score=154.71 Aligned_cols=218 Identities=20% Similarity=0.194 Sum_probs=128.0
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCcccc-chhccccCcccEEecCC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHLKNSN 424 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~~L~~L~l~~ 424 (777)
++++.+++ .+..+|..+ .++|++|++++|.++.+|. .+.++++|++|++++| .+..+ |..+.++++|++|++++
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCC
Confidence 55666655 566666543 4577777777777776653 4667777777777777 45444 55577777777777777
Q ss_pred ccccccc-CcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeec
Q 048758 425 VHSLEEM-PKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWS 503 (777)
Q Consensus 425 ~~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 503 (777)
|..+..+ |..+..+++|++|++..+.. ....+..+..+++|+.|+++.+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l------------------------------~~~~~~~~~~l~~L~~L~l~~n 139 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGL------------------------------QELGPGLFRGLAALQYLYLQDN 139 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCC------------------------------CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcC------------------------------CEECHhHhhCCcCCCEEECCCC
Confidence 7545554 44566666666664322110 0111223444556666666544
Q ss_pred cCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcc-cCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceeeecCC
Q 048758 504 ARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIW-LGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELLISGM 581 (777)
Q Consensus 504 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~L~~~ 581 (777)
... ......+..+++|+.|++++|.+..+|.. +. .+++|+.|++++|......| .++.+++|++|++++|
T Consensus 140 ~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 140 ALQ------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CCC------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ccc------ccCHhHhccCCCccEEECCCCcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeCCCC
Confidence 211 11122345566777777777776665543 33 46777777777776544334 5677777777777776
Q ss_pred CCceEeCcccccCCCCCCCCCCceeeccCcc
Q 048758 582 DGVKIVGLEFYGNICSVPFPSLEALSFSDMT 612 (777)
Q Consensus 582 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 612 (777)
.. +.++..... .+++|+.|++++++
T Consensus 212 ~l-~~~~~~~~~-----~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 212 NL-SALPTEALA-----PLRALQYLRLNDNP 236 (285)
T ss_dssp CC-SCCCHHHHT-----TCTTCCEEECCSSC
T ss_pred cC-CcCCHHHcc-----cCcccCEEeccCCC
Confidence 43 333322222 26777888877764
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=7.6e-16 Score=168.67 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=50.3
Q ss_pred HHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcc
Q 048758 338 MLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKL 417 (777)
Q Consensus 338 ~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L 417 (777)
..|..+++|++|+|++| .+...++ ++.+++|++|++++|.++.+|.. ++|++|++++| .+..+|. ..+++|
T Consensus 52 ~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L~~N-~l~~~~~--~~l~~L 122 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLHAANN-NISRVSC--SRGQGK 122 (487)
T ss_dssp GGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEECCSS-CCCCEEE--CCCSSC
T ss_pred HHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEECcCC-cCCCCCc--cccCCC
Confidence 34555666666666655 4444333 55666666666666665555422 55666666665 4444432 234556
Q ss_pred cEEecCCccccccc-CcccccccCCccc
Q 048758 418 RHLKNSNVHSLEEM-PKGFGKLTSLLTL 444 (777)
Q Consensus 418 ~~L~l~~~~~~~~~-p~~~~~l~~L~~L 444 (777)
+.|++++|. +..+ |..++.+++|+.|
T Consensus 123 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L 149 (487)
T 3oja_A 123 KNIYLANNK-ITMLRDLDEGCRSRVQYL 149 (487)
T ss_dssp EEEECCSSC-CCSGGGBCGGGGSSEEEE
T ss_pred CEEECCCCC-CCCCCchhhcCCCCCCEE
Confidence 666666655 3322 3334444444444
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=7e-15 Score=149.35 Aligned_cols=101 Identities=23% Similarity=0.265 Sum_probs=78.9
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccchhccccCccc
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 418 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~ 418 (777)
+.++++++.++++++ .+..+|..+. .++++|++++|.++.+ |..+.++++|++|++++| .+..++.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 456778888888877 7888887664 6888889988888866 456888888999999888 67777664 7888888
Q ss_pred EEecCCcccccccCcccccccCCcccCc
Q 048758 419 HLKNSNVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 419 ~L~l~~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
+|++++|. +..+|..+..+++|+.|++
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDV 107 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEEC
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEEC
Confidence 99888887 7777777777777776643
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=3.9e-14 Score=148.50 Aligned_cols=69 Identities=19% Similarity=0.280 Sum_probs=38.4
Q ss_pred CeeeccCCcccccchhhhccccCcEEeeCCCcCccccchh-ccccCcccEEecCCcccccccCcc-cccccCCc
Q 048758 371 RCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKNSNVHSLEEMPKG-FGKLTSLL 442 (777)
Q Consensus 371 ~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-~~~l~~L~ 442 (777)
++++.++++++++|..+ ..++++|++++| .++.+|.+ +.++++|++|++++|...+.+|.+ |.++++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 44555556666666554 245666666666 56666543 566666666666666633444432 34444443
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=1.4e-14 Score=145.90 Aligned_cols=95 Identities=24% Similarity=0.409 Sum_probs=59.2
Q ss_pred ceeEEeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccchh-ccccCcccEEec
Q 048758 345 RLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKN 422 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l 422 (777)
..+.++++++ .+..+|..+. .+|++|++++|.++.+|. .+.++++|++|++++| .+..+|.. +.++++|++|++
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 3456677666 5666665543 467777777777776654 5666777777777776 55566554 356777777777
Q ss_pred CCcccccccCcc-cccccCCccc
Q 048758 423 SNVHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 423 ~~~~~~~~~p~~-~~~l~~L~~L 444 (777)
++|. +..+|.. +..+++|++|
T Consensus 93 ~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 93 TDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCc-CCcCCHhHcccccCCCEE
Confidence 7766 5555432 4555555555
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.57 E-value=5.4e-15 Score=146.07 Aligned_cols=197 Identities=16% Similarity=0.121 Sum_probs=112.5
Q ss_pred ceeEEeecCccCccccCc-cccCcCccCeeeccCCc-ccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccEE
Q 048758 345 RLRVFSLRGYCNIFNLPN-EIGNLKHLRCLNLSRTR-IQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHL 420 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L 420 (777)
+|++|++++| .+..+|. .++++++|++|++++|. ++.+|+ .+.++++|++|++++|..++.+|. .+.++++|++|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5777777776 5666554 56777777777777775 776664 566777777777776226666653 46677777777
Q ss_pred ecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceE
Q 048758 421 KNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALIL 500 (777)
Q Consensus 421 ~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 500 (777)
++++|. +..+|. ++.+++|+.| +.|++
T Consensus 111 ~l~~n~-l~~lp~-~~~l~~L~~L---------------------------------------------------~~L~l 137 (239)
T 2xwt_C 111 GIFNTG-LKMFPD-LTKVYSTDIF---------------------------------------------------FILEI 137 (239)
T ss_dssp EEEEEC-CCSCCC-CTTCCBCCSE---------------------------------------------------EEEEE
T ss_pred eCCCCC-Cccccc-cccccccccc---------------------------------------------------cEEEC
Confidence 777776 555554 4444444311 12222
Q ss_pred eeccCCCccchHHHhcccCCCCCCCC-eEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC--CCCCC-CCccee
Q 048758 501 EWSARSERCEFETQVLSMLKPHRDVQ-ELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP--SVGQL-PFLKEL 576 (777)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~~~~l-~~L~~L 576 (777)
+.+... .......+..+++|+ .|++++|.+..+|..... .++|+.|++++|..++.++ .++.+ ++|++|
T Consensus 138 ~~N~~l-----~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 138 TDNPYM-----TSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp ESCTTC-----CEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred CCCcch-----hhcCcccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 211000 000012244456666 777777766666654432 2677777777775444443 45666 777777
Q ss_pred eecCCCCceEeCcccccCCCCCCCCCCceeeccCc
Q 048758 577 LISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDM 611 (777)
Q Consensus 577 ~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 611 (777)
++++|. ++.++.. .|++|+.|.+.++
T Consensus 211 ~l~~N~-l~~l~~~--------~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 211 DVSQTS-VTALPSK--------GLEHLKELIARNT 236 (239)
T ss_dssp ECTTCC-CCCCCCT--------TCTTCSEEECTTC
T ss_pred ECCCCc-cccCChh--------HhccCceeeccCc
Confidence 777653 2333221 1555555555544
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=1.9e-14 Score=145.57 Aligned_cols=201 Identities=20% Similarity=0.174 Sum_probs=122.2
Q ss_pred CceeEEeecCccCccccCc-cccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccc-hhccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp-~~~~~L~~L~~L 420 (777)
++|++|++++| .+..++. .+.++++|++|++++|.++.++. .+.++++|++|++++| .+..++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEE
Confidence 35778888877 5666554 67777888888888887776654 5777788888888887 555554 457778888888
Q ss_pred ecCCcccccccCc-ccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccce
Q 048758 421 KNSNVHSLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALI 499 (777)
Q Consensus 421 ~l~~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 499 (777)
++++|. +..++. .++.+++|++|++..+..... ..+..+..+++|+.|+
T Consensus 106 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------------------------~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 106 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF-----------------------------KLPEYFSNLTNLEHLD 155 (276)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCC-----------------------------CCCGGGGGCTTCCEEE
T ss_pred ECCCCC-ccccCchhcccCCCCCEEECcCCcccee-----------------------------cCchhhccCCCCCEEE
Confidence 887777 444443 466666666664432211100 0122344455566666
Q ss_pred EeeccCCCccchHHHhcccCCCCCCCC-eEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC--CCCCCCCccee
Q 048758 500 LEWSARSERCEFETQVLSMLKPHRDVQ-ELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP--SVGQLPFLKEL 576 (777)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~~~~l~~L~~L 576 (777)
++.+...... ...+..+..++.+. .|++++|.+..++.... ...+|+.|++++|.. +.+| .++.+++|++|
T Consensus 156 Ls~N~l~~~~---~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 156 LSSNKIQSIY---CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQL-KSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CCSSCCCEEC---GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCC-SCCCTTTTTTCCSCCEE
T ss_pred CCCCCCCcCC---HHHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCce-eecCHhHhcccccccEE
Confidence 6544211100 01111122223333 78888888777665544 345788888888874 4444 35778888888
Q ss_pred eecCCC
Q 048758 577 LISGMD 582 (777)
Q Consensus 577 ~L~~~~ 582 (777)
++++|+
T Consensus 230 ~l~~N~ 235 (276)
T 2z62_A 230 WLHTNP 235 (276)
T ss_dssp ECCSSC
T ss_pred EccCCc
Confidence 888764
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=6.6e-14 Score=141.07 Aligned_cols=176 Identities=20% Similarity=0.267 Sum_probs=115.4
Q ss_pred ccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchh-ccccCcccE
Q 048758 341 NHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRH 419 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~ 419 (777)
..+++|+.|++++| .+..++ .++.+++|++|++++|.++.++ .++++++|++|++++| .+..+|.. ++++++|++
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 45677888888877 666665 3778888888888888887764 6778888888888888 56666544 678888888
Q ss_pred EecCCcccccccCcc-cccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccc
Q 048758 420 LKNSNVHSLEEMPKG-FGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEAL 498 (777)
Q Consensus 420 L~l~~~~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 498 (777)
|++++|. +..+|.. ++.+++|++|++..+.
T Consensus 114 L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~------------------------------------------------ 144 (272)
T 3rfs_A 114 LVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQ------------------------------------------------ 144 (272)
T ss_dssp EECTTSC-CCCCCTTTTTTCTTCCEEECCSSC------------------------------------------------
T ss_pred EECCCCc-CCccCHHHhccCCCCCEEECCCCc------------------------------------------------
Confidence 8888887 5555443 4555555555321110
Q ss_pred eEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC-CCCCCCCcceee
Q 048758 499 ILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP-SVGQLPFLKELL 577 (777)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~~~~l~~L~~L~ 577 (777)
........+..+++|+.|++++|.+..++..... .+++|+.|++++|......+ .++.+++|++|+
T Consensus 145 ------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 211 (272)
T 3rfs_A 145 ------------LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 211 (272)
T ss_dssp ------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------cCccCHHHhccCccCCEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence 0000012234566778888888877766654311 47788888888876444333 367777888888
Q ss_pred ecCCC
Q 048758 578 ISGMD 582 (777)
Q Consensus 578 L~~~~ 582 (777)
+++|.
T Consensus 212 l~~N~ 216 (272)
T 3rfs_A 212 LHDNP 216 (272)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 87763
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=3.2e-14 Score=146.06 Aligned_cols=170 Identities=17% Similarity=0.210 Sum_probs=125.8
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
+..+++|++|++++| .+..++. +..+++|++|++++|.++.+| .+..+++|++|++++| .+..+|. +..+++|++
T Consensus 59 ~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~ 133 (308)
T 1h6u_A 59 VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQV 133 (308)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCE
T ss_pred hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCE
Confidence 678999999999998 7888887 999999999999999999886 6889999999999999 7777775 899999999
Q ss_pred EecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccce
Q 048758 420 LKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALI 499 (777)
Q Consensus 420 L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 499 (777)
|++++|. +..++. ++.+++|+.|++..+..
T Consensus 134 L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l------------------------------------------------ 163 (308)
T 1h6u_A 134 LYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQV------------------------------------------------ 163 (308)
T ss_dssp EECCSSC-CCCCGG-GGGCTTCCEEECCSSCC------------------------------------------------
T ss_pred EECCCCc-cCcCcc-ccCCCCccEEEccCCcC------------------------------------------------
Confidence 9999998 666554 55566665553311100
Q ss_pred EeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeec
Q 048758 500 LEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLIS 579 (777)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~ 579 (777)
. ....+..+++|+.|++++|.+..++.. . .+++|+.|++++|.. +.++.+..+++|++|+++
T Consensus 164 ------~--------~~~~l~~l~~L~~L~l~~n~l~~~~~l-~--~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 164 ------S--------DLTPLANLSKLTTLKADDNKISDISPL-A--SLPNLIEVHLKNNQI-SDVSPLANTSNLFIVTLT 225 (308)
T ss_dssp ------C--------CCGGGTTCTTCCEEECCSSCCCCCGGG-G--GCTTCCEEECTTSCC-CBCGGGTTCTTCCEEEEE
T ss_pred ------C--------CChhhcCCCCCCEEECCCCccCcChhh-c--CCCCCCEEEccCCcc-CccccccCCCCCCEEEcc
Confidence 0 001134556677777777777666652 2 477788888877753 445456777777777777
Q ss_pred CCC
Q 048758 580 GMD 582 (777)
Q Consensus 580 ~~~ 582 (777)
+|.
T Consensus 226 ~N~ 228 (308)
T 1h6u_A 226 NQT 228 (308)
T ss_dssp EEE
T ss_pred CCe
Confidence 764
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.52 E-value=1.3e-13 Score=136.19 Aligned_cols=198 Identities=14% Similarity=0.157 Sum_probs=112.7
Q ss_pred CCCCeEEEeecCCCCCCcc-cCCCCCCCeeEEEEeCCCCCCCCC--CCCCCCCcceeeecCCCCceEeCcccccCCCCCC
Q 048758 523 RDVQELTITGYSGTKFPIW-LGDSSFSKLVQLKLEGCGKCTSLP--SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVP 599 (777)
Q Consensus 523 ~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 599 (777)
++|+.|+++++.+..+|.. +. .+++|+.|++++|..++.++ .++.+++|++|++++|..++.++...+..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~--~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~----- 103 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFS--NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE----- 103 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTT--TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC-----
T ss_pred CcccEEEEeCCcceEECHHHcc--CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC-----
Confidence 4677788877777766652 33 47778888888776455554 46677778888887744555554332221
Q ss_pred CCCCceeeccCccchhhhhccccCCCCCCCCCcc---EEEEecCCCc---c-cccCCCCCcc-EEEEcCCCCcccCCCCC
Q 048758 600 FPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLE---TLDITSCDQL---L-VTIQCLPALS-ELQIDGCKRVVFSSPHL 671 (777)
Q Consensus 600 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~---~L~l~~c~~l---~-~~~~~l~~L~-~L~l~~~~~l~~~~~~~ 671 (777)
+++|+.|+++++. +..+ + . ...+++|+ +|++++|+.+ + ..+..+++|+ +|++++|.
T Consensus 104 l~~L~~L~l~~n~-l~~l-p----~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--------- 167 (239)
T 2xwt_C 104 LPLLKFLGIFNTG-LKMF-P----D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--------- 167 (239)
T ss_dssp CTTCCEEEEEEEC-CCSC-C----C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC---------
T ss_pred CCCCCEEeCCCCC-Cccc-c----c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC---------
Confidence 6667777776653 1110 0 0 12334444 6666655322 1 2244455555 55555543
Q ss_pred ccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCC
Q 048758 672 VHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSS 751 (777)
Q Consensus 672 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~ 751 (777)
+...+...+.. ++|++|++++|..++.++... +..+.++|++|++++ +.++.+|.. .+++
T Consensus 168 -----------l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~-----~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~ 227 (239)
T 2xwt_C 168 -----------FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDA-----FGGVYSGPSLLDVSQ-TSVTALPSK--GLEH 227 (239)
T ss_dssp -----------CCEECTTTTTT-CEEEEEECTTCTTCCEECTTT-----TTTCSBCCSEEECTT-CCCCCCCCT--TCTT
T ss_pred -----------CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHH-----hhccccCCcEEECCC-CccccCChh--Hhcc
Confidence 12333344444 677778887765566665432 122225778888877 466777654 5777
Q ss_pred ccEEEecCCCCC
Q 048758 752 LTEMRIYGCTSL 763 (777)
Q Consensus 752 L~~L~l~~c~~l 763 (777)
|+.|++.+++.+
T Consensus 228 L~~L~l~~~~~l 239 (239)
T 2xwt_C 228 LKELIARNTWTL 239 (239)
T ss_dssp CSEEECTTC---
T ss_pred CceeeccCccCC
Confidence 888887777643
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=3.1e-13 Score=137.19 Aligned_cols=195 Identities=17% Similarity=0.175 Sum_probs=119.9
Q ss_pred ccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCcccc-chhccccCcccEEecCCcccccccCcccccccCCc
Q 048758 364 IGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLL 442 (777)
Q Consensus 364 i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~ 442 (777)
++++++|+.++++++.++.+|..+. +++++|++++| .+..+ |..+.++++|++|++++|. +..++.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCC
Confidence 6788999999999999999998775 78999999999 56555 4568999999999999987 5555432 3444444
Q ss_pred ccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCC
Q 048758 443 TLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPH 522 (777)
Q Consensus 443 ~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~ 522 (777)
+|++ +.+... .....+..+
T Consensus 81 ~L~L------------------------------------------------------s~N~l~-------~l~~~~~~l 99 (290)
T 1p9a_G 81 TLDL------------------------------------------------------SHNQLQ-------SLPLLGQTL 99 (290)
T ss_dssp EEEC------------------------------------------------------CSSCCS-------SCCCCTTTC
T ss_pred EEEC------------------------------------------------------CCCcCC-------cCchhhccC
Confidence 4422 111000 001123345
Q ss_pred CCCCeEEEeecCCCCCCcc-cCCCCCCCeeEEEEeCCCCCCCCC--CCCCCCCcceeeecCCCCceEeCcccccCCCCCC
Q 048758 523 RDVQELTITGYSGTKFPIW-LGDSSFSKLVQLKLEGCGKCTSLP--SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVP 599 (777)
Q Consensus 523 ~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 599 (777)
++|+.|++++|.+..+|.. +. .+++|+.|+|++|... .++ .+..+++|++|+|++|. ++.++...
T Consensus 100 ~~L~~L~l~~N~l~~l~~~~~~--~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~-------- 167 (290)
T 1p9a_G 100 PALTVLDVSFNRLTSLPLGALR--GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN-LTELPAGL-------- 167 (290)
T ss_dssp TTCCEEECCSSCCCCCCSSTTT--TCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC-CSCCCTTT--------
T ss_pred CCCCEEECCCCcCcccCHHHHc--CCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc-CCccCHHH--------
Confidence 5666666666666665532 33 4666777777666533 333 34566666666666653 22222211
Q ss_pred CCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--CcccccCCCCCccEEEEcCCC
Q 048758 600 FPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCK 662 (777)
Q Consensus 600 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~~~ 662 (777)
...+++|++|++++|. .+|..+...++|+.|++++|+
T Consensus 168 --------------------------~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 168 --------------------------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --------------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred --------------------------hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 1234455555555553 345566666778888888776
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.52 E-value=8.8e-14 Score=140.69 Aligned_cols=91 Identities=21% Similarity=0.360 Sum_probs=71.3
Q ss_pred EeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccEEecCCcc
Q 048758 349 FSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 349 L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~l~~~~ 426 (777)
.+..+. .+..+|..+. .+|++|++++|.++.++. .+.++++|++|++++| .+..++. .+.++++|++|++++|.
T Consensus 12 ~~c~~~-~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMEL-NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTS-CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCC-CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc
Confidence 344444 5677887664 589999999999998876 7899999999999999 6766664 68899999999999998
Q ss_pred cccccC-cccccccCCccc
Q 048758 427 SLEEMP-KGFGKLTSLLTL 444 (777)
Q Consensus 427 ~~~~~p-~~~~~l~~L~~L 444 (777)
+..++ ..+.++++|++|
T Consensus 88 -l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 88 -IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp -CCEECTTTTTTCTTCCEE
T ss_pred -cCccChhhhcCCccccEE
Confidence 55544 456667777666
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=1.3e-13 Score=144.40 Aligned_cols=238 Identities=16% Similarity=0.118 Sum_probs=139.8
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccchh-ccccCcccEEecCC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKNSN 424 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l~~ 424 (777)
++++.+++ .++++|..+ ..++++|+|++|+|+.+|+ .+.++++|++|++++|...+.+|.. +.++++|+++...+
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34556655 677777665 3567777888877777775 4677778888888777444556543 56777776544443
Q ss_pred cccccccC-cccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeec
Q 048758 425 VHSLEEMP-KGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWS 503 (777)
Q Consensus 425 ~~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 503 (777)
+..+..++ ..++.+++|+.|.+..+............. .++..+.+..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~------------------------------~~l~~l~l~~~ 138 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS------------------------------LQKVLLDIQDN 138 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB------------------------------SSCEEEEEESC
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhccc------------------------------chhhhhhhccc
Confidence 33366664 346777777777665554322111111110 11122222111
Q ss_pred cCCCccchHHHhcccCCC-CCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCC--CCCCCCCcceeeecC
Q 048758 504 ARSERCEFETQVLSMLKP-HRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLP--SVGQLPFLKELLISG 580 (777)
Q Consensus 504 ~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~~~~l~~L~~L~L~~ 580 (777)
.... ......+.. ...++.|++++|.+..+|.... ...+|+.|.+.++..++.+| .++.+++|++|++++
T Consensus 139 ~~i~-----~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f--~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~ 211 (350)
T 4ay9_X 139 INIH-----TIERNSFVGLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211 (350)
T ss_dssp TTCC-----EECTTSSTTSBSSCEEEECCSSCCCEECTTSS--TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT
T ss_pred cccc-----cccccchhhcchhhhhhccccccccCCChhhc--cccchhHHhhccCCcccCCCHHHhccCcccchhhcCC
Confidence 0000 000111222 2457888899988888877655 46789999998888888887 478899999999998
Q ss_pred CCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEec
Q 048758 581 MDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITS 639 (777)
Q Consensus 581 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~ 639 (777)
|. ++.++... |.+|+.|.+.++.+++.+. -...+++|+.+++.+
T Consensus 212 N~-l~~lp~~~--------~~~L~~L~~l~~~~l~~lP------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 212 TR-IHSLPSYG--------LENLKKLRARSTYNLKKLP------TLEKLVALMEASLTY 255 (350)
T ss_dssp SC-CCCCCSSS--------CTTCCEEECTTCTTCCCCC------CTTTCCSCCEEECSC
T ss_pred CC-cCccChhh--------hccchHhhhccCCCcCcCC------CchhCcChhhCcCCC
Confidence 74 55554322 6677777776665544321 013455666666653
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=2.3e-15 Score=157.43 Aligned_cols=58 Identities=21% Similarity=0.225 Sum_probs=37.5
Q ss_pred CCCccEEEEecCCCc----ccccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEccC
Q 048758 629 LLLLETLDITSCDQL----LVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISR 704 (777)
Q Consensus 629 l~~L~~L~l~~c~~l----~~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 704 (777)
+++|++|++++|..+ +..+..+++|++|++++|.... ......+..+++|++|++++
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-------------------~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-------------------PETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-------------------GGGGGGGGGCTTCCEEECTT
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC-------------------HHHHHHHhcCCCCCEEeccC
Confidence 567888888887643 3455667788888888775221 11112234578888888888
Q ss_pred C
Q 048758 705 C 705 (777)
Q Consensus 705 c 705 (777)
|
T Consensus 282 ~ 282 (336)
T 2ast_B 282 I 282 (336)
T ss_dssp S
T ss_pred c
Confidence 7
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=5.8e-14 Score=142.74 Aligned_cols=169 Identities=20% Similarity=0.250 Sum_probs=118.0
Q ss_pred ccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEE
Q 048758 341 NHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 420 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L 420 (777)
..+++|++|++++| .+..+|. ++.+++|++|++++|.++.++. +.++++|++|++++| .+..+|. +.++++|++|
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 44677888899887 7777764 7888899999999998888876 888889999999988 6777654 8888889999
Q ss_pred ecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceE
Q 048758 421 KNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALIL 500 (777)
Q Consensus 421 ~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 500 (777)
++++|. +..+ ..+..+++|+.|++..+.
T Consensus 118 ~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~-------------------------------------------------- 145 (291)
T 1h6t_A 118 SLEHNG-ISDI-NGLVHLPQLESLYLGNNK-------------------------------------------------- 145 (291)
T ss_dssp ECTTSC-CCCC-GGGGGCTTCCEEECCSSC--------------------------------------------------
T ss_pred ECCCCc-CCCC-hhhcCCCCCCEEEccCCc--------------------------------------------------
Confidence 988887 5554 345555555555321110
Q ss_pred eeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecC
Q 048758 501 EWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISG 580 (777)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~ 580 (777)
... ...+..+++|+.|++++|.+..++. +. .+++|+.|++++|. ++.++.+..+++|+.|++++
T Consensus 146 ----l~~--------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 146 ----ITD--------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS 209 (291)
T ss_dssp ----CCC--------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred ----CCc--------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCc-CCCChhhccCCCCCEEECcC
Confidence 000 0123345667777777777766655 33 47778888887775 45566677777788888877
Q ss_pred CC
Q 048758 581 MD 582 (777)
Q Consensus 581 ~~ 582 (777)
|.
T Consensus 210 n~ 211 (291)
T 1h6t_A 210 QE 211 (291)
T ss_dssp EE
T ss_pred Cc
Confidence 63
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=145.28 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=78.6
Q ss_pred cCCceeEEeecCccCccccCccc--cCcCccCeeeccCCccccc-c----hhhhccccCcEEeeCCCcCccccc-hhccc
Q 048758 342 HLPRLRVFSLRGYCNIFNLPNEI--GNLKHLRCLNLSRTRIQIL-P----ESINSLYNLHTILLEDCWKLKKLC-KDMGN 413 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp~~i--~~l~~L~~L~L~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~l~~lp-~~~~~ 413 (777)
.+++|++|++++|......|..+ +.+++|++|++++|.++.. | ..+..+++|++|++++| .+..++ ..+++
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~ 167 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRA 167 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhcc
Confidence 35679999999995445677777 8999999999999999842 2 34457999999999999 555554 67889
Q ss_pred cCcccEEecCCcccccc--cC--cccccccCCcccCc
Q 048758 414 LTKLRHLKNSNVHSLEE--MP--KGFGKLTSLLTLGR 446 (777)
Q Consensus 414 L~~L~~L~l~~~~~~~~--~p--~~~~~l~~L~~L~~ 446 (777)
+++|++|++++|..... ++ ..++.+++|++|++
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLAL 204 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBC
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEEC
Confidence 99999999999983321 22 22356777777744
No 92
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.2e-13 Score=137.08 Aligned_cols=75 Identities=28% Similarity=0.394 Sum_probs=62.5
Q ss_pred CccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccch-hccccCcccEEecCCcccccccCcc-cccccCCcccC
Q 048758 368 KHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLKNSNVHSLEEMPKG-FGKLTSLLTLG 445 (777)
Q Consensus 368 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~ 445 (777)
.+.++++++++.++.+|..+. .+|++|++++| .+..+|. .+.++++|++|++++|. +..+|.. +..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEE
Confidence 358899999999999998765 68999999999 6777765 68999999999999998 7777765 47788887774
Q ss_pred c
Q 048758 446 R 446 (777)
Q Consensus 446 ~ 446 (777)
+
T Consensus 92 l 92 (270)
T 2o6q_A 92 V 92 (270)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=6.9e-15 Score=153.73 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=79.1
Q ss_pred HccC--CceeEEeecCccCccccCccccCcCccCeeeccCCcccc--cchhhhccccCcEEeeCCCcCccccchhccccC
Q 048758 340 LNHL--PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQI--LPESINSLYNLHTILLEDCWKLKKLCKDMGNLT 415 (777)
Q Consensus 340 ~~~l--~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~ 415 (777)
+..+ +++++|++++| .+...+..+..+++|++|++++|.+.. +|..+..+++|++|++++|......|..+++++
T Consensus 64 ~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 64 TGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp HHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred HHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 4444 78999999988 666666667789999999999998873 778888999999999999943346677788899
Q ss_pred cccEEecCCcccccc--cCcccccccCCccc
Q 048758 416 KLRHLKNSNVHSLEE--MPKGFGKLTSLLTL 444 (777)
Q Consensus 416 ~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L 444 (777)
+|++|++++|..+.. ++..+..+++|++|
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 999999999853442 44445556666555
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=2.7e-13 Score=151.27 Aligned_cols=98 Identities=22% Similarity=0.327 Sum_probs=72.7
Q ss_pred ccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEE
Q 048758 341 NHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 420 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L 420 (777)
..+++|+.|++++| .+..+| .++.+++|+.|+|++|.+..+|+ +..+++|++|++++| .+..+| .+..+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 45677888888877 677776 47888888888888888887766 778888888888888 666665 57788888888
Q ss_pred ecCCcccccccCcccccccCCcccC
Q 048758 421 KNSNVHSLEEMPKGFGKLTSLLTLG 445 (777)
Q Consensus 421 ~l~~~~~~~~~p~~~~~l~~L~~L~ 445 (777)
++++|. +..++ .+..+++|+.|.
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L~ 137 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESLY 137 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEEE
T ss_pred EecCCC-CCCCc-cccCCCccCEEE
Confidence 888887 55543 355566666553
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=5.5e-15 Score=157.57 Aligned_cols=88 Identities=16% Similarity=0.104 Sum_probs=43.7
Q ss_pred cCCCCCCCCeEEEeecCC-----CCCCcccCCCCCCCeeEEEEeCCCCCCC----CC-CC--CCCCCcceeeecCCCCce
Q 048758 518 MLKPHRDVQELTITGYSG-----TKFPIWLGDSSFSKLVQLKLEGCGKCTS----LP-SV--GQLPFLKELLISGMDGVK 585 (777)
Q Consensus 518 ~l~~~~~L~~L~l~~~~~-----~~~p~~~~~~~l~~L~~L~L~~~~~~~~----l~-~~--~~l~~L~~L~L~~~~~l~ 585 (777)
.+..+++|+.|++++|.+ ..+|..+. .+++|+.|+|++|..... ++ .+ +.+++|++|+|++|..-.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALK--SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGG--GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHc--cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 444555666666666554 22344333 356666666666653221 12 22 335666666666654222
Q ss_pred ----EeCcccccCCCCCCCCCCceeeccCcc
Q 048758 586 ----IVGLEFYGNICSVPFPSLEALSFSDMT 612 (777)
Q Consensus 586 ----~~~~~~~~~~~~~~~~~L~~L~l~~~~ 612 (777)
.++..+.. .+++|+.|++++++
T Consensus 289 ~g~~~l~~~l~~-----~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 289 DAVRTLKTVIDE-----KMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHH-----HCTTCCEEECTTSB
T ss_pred HHHHHHHHHHHh-----cCCCceEEEccCCc
Confidence 12222111 15667777776654
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=3.1e-12 Score=127.14 Aligned_cols=96 Identities=25% Similarity=0.325 Sum_probs=70.4
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccEEe
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLK 421 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~ 421 (777)
...++++++++ .+..+|..+. .+|+.|++++|.++.+++ .+.++++|++|++++| .+..++. .+.++++|++|+
T Consensus 14 ~~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEE
Confidence 34678888877 7888887665 588999999998886654 5888899999999998 5655544 478888999999
Q ss_pred cCCcccccccCc-ccccccCCccc
Q 048758 422 NSNVHSLEEMPK-GFGKLTSLLTL 444 (777)
Q Consensus 422 l~~~~~~~~~p~-~~~~l~~L~~L 444 (777)
+++|. +..+|. .++.+++|++|
T Consensus 90 L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 90 LANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCc-ccccChhHhcccCCCCEE
Confidence 98887 555543 24444444444
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=8.6e-13 Score=132.86 Aligned_cols=108 Identities=12% Similarity=0.079 Sum_probs=51.1
Q ss_pred CCCccEEEEecCC--Cc-ccccCCCCCccEEEEcCCCCcc-----cCCCCCccEEEEeecCccccccccCCCCCCCCCeE
Q 048758 629 LLLLETLDITSCD--QL-LVTIQCLPALSELQIDGCKRVV-----FSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRL 700 (777)
Q Consensus 629 l~~L~~L~l~~c~--~l-~~~~~~l~~L~~L~l~~~~~l~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 700 (777)
+++|++|++++|. .+ +..+..+++|++|++++|..-. +..++.|+.|++.+|. +...+...+..+++|++|
T Consensus 132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEE
Confidence 4455555555552 11 1223455555555555553211 1122334444443332 223344445566677777
Q ss_pred EccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCC
Q 048758 701 QISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSS 751 (777)
Q Consensus 701 ~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~ 751 (777)
++++++-.. -++.|+.|+++.+.....+|..++.++.
T Consensus 211 ~l~~N~~~~--------------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 211 WLHDNPWDC--------------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp ECCSSCBCC--------------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred EccCCCccc--------------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 776653211 1145666666665444556665554444
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1e-12 Score=125.17 Aligned_cols=81 Identities=19% Similarity=0.206 Sum_probs=45.8
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEec
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKN 422 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l 422 (777)
+++|++|++++| .+..+| .+..+++|++|++++|.++.++ .+..+++|++|++++|......|..++++++|++|++
T Consensus 43 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 43 MNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred cCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 445666666655 555555 4566666666666666554443 5555666666666665222224445556666666666
Q ss_pred CCcc
Q 048758 423 SNVH 426 (777)
Q Consensus 423 ~~~~ 426 (777)
++|.
T Consensus 120 s~n~ 123 (197)
T 4ezg_A 120 SHSA 123 (197)
T ss_dssp CSSB
T ss_pred cCCc
Confidence 6555
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=8.9e-15 Score=155.91 Aligned_cols=256 Identities=17% Similarity=0.119 Sum_probs=151.7
Q ss_pred HHHHHHHccCCceeEEeecCccCccc-----cCccccCcCccCeeeccCCccc----ccchhh-------hccccCcEEe
Q 048758 334 SALQMLLNHLPRLRVFSLRGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ----ILPESI-------NSLYNLHTIL 397 (777)
Q Consensus 334 ~~~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~----~lp~~i-------~~L~~L~~L~ 397 (777)
..+...+..+++|++|+|++| .+.. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 344456778889999999988 4443 3445778899999999987554 334444 6788999999
Q ss_pred eCCCcCccc-----cchhccccCcccEEecCCccccccc-CcccccccCCcccCcEEecCCCCCCccccccccccCCcEE
Q 048758 398 LEDCWKLKK-----LCKDMGNLTKLRHLKNSNVHSLEEM-PKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLK 471 (777)
Q Consensus 398 l~~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~ 471 (777)
+++| .+.. +|..+.++++|++|++++|. +... +..+... |..+ ...
T Consensus 101 Ls~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~--l~~l-------------------~~~----- 152 (386)
T 2ca6_A 101 LSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARA--LQEL-------------------AVN----- 152 (386)
T ss_dssp CCSC-CCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHH--HHHH-------------------HHH-----
T ss_pred CCCC-cCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHH--HHHH-------------------hhh-----
Confidence 9988 4443 67778888999999998887 3321 1111111 0000 000
Q ss_pred EccccccCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCC------CCcccCCC
Q 048758 472 ISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTK------FPIWLGDS 545 (777)
Q Consensus 472 i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~p~~~~~~ 545 (777)
.. -...++|+.|+++.+.... .........+..+++|+.|++++|.+.. .|..+.
T Consensus 153 ------------~~---~~~~~~L~~L~L~~n~l~~--~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~-- 213 (386)
T 2ca6_A 153 ------------KK---AKNAPPLRSIICGRNRLEN--GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA-- 213 (386)
T ss_dssp ------------HH---HHTCCCCCEEECCSSCCTG--GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--
T ss_pred ------------hh---cccCCCCcEEECCCCCCCc--HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh--
Confidence 00 0000345555554432110 0111112344456688888888887651 222443
Q ss_pred CCCCeeEEEEeCCCCC----CCCC-CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchh----h
Q 048758 546 SFSKLVQLKLEGCGKC----TSLP-SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWE----E 616 (777)
Q Consensus 546 ~l~~L~~L~L~~~~~~----~~l~-~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~----~ 616 (777)
.+++|+.|+|++|... ..+| .+..+++|++|+|++|..-......+........+++|+.|++++|.--. .
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 5889999999998752 3344 56788999999999986322110001010000127899999999875322 1
Q ss_pred hhccccCCCCCCCCCccEEEEecCC
Q 048758 617 WIPCGAGTLPRRLLLLETLDITSCD 641 (777)
Q Consensus 617 ~~~~~~~~~~~~l~~L~~L~l~~c~ 641 (777)
+.. .+...+++|++|++++|+
T Consensus 294 l~~----~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 294 LKT----VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHH----HHHHHCTTCCEEECTTSB
T ss_pred HHH----HHHhcCCCceEEEccCCc
Confidence 111 111246899999999986
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.35 E-value=3.8e-12 Score=140.31 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=73.9
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
.+|++|+|++| .+..+|..+. ++|++|++++|.++.+| ..+++|++|++++| .+..+|. +.+ +|++|+++
T Consensus 59 ~~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECC
Confidence 48999999988 7888998764 78999999999999998 56899999999999 7777888 665 99999999
Q ss_pred CcccccccCcccccccCCcccCc
Q 048758 424 NVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 424 ~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
+|. +..+|. .+++|+.|++
T Consensus 129 ~N~-l~~lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 129 NNQ-LTMLPE---LPALLEYINA 147 (571)
T ss_dssp SSC-CSCCCC---CCTTCCEEEC
T ss_pred CCc-CCCCCC---cCccccEEeC
Confidence 998 676776 4566666643
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.35 E-value=4.3e-12 Score=130.48 Aligned_cols=201 Identities=20% Similarity=0.181 Sum_probs=134.0
Q ss_pred CCCCCeEEEeecCCCC-CCcccCCCCCCCeeEEEEeCCCCCCCCC-----CCCCCCCcceeeecCCCCceEeCcccccCC
Q 048758 522 HRDVQELTITGYSGTK-FPIWLGDSSFSKLVQLKLEGCGKCTSLP-----SVGQLPFLKELLISGMDGVKIVGLEFYGNI 595 (777)
Q Consensus 522 ~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~-----~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 595 (777)
.++|++|++++|.+.. .|..+....+++|+.|++++|......+ .+..+++|++|++++|......+..+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--- 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR--- 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC---
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc---
Confidence 3569999999998754 3443311368899999999998655433 234688999999998865333322222
Q ss_pred CCCCCCCCceeeccCccchhhh-hccccCCCCCCCCCccEEEEecCCC--ccc----ccCCCCCccEEEEcCCCCcccCC
Q 048758 596 CSVPFPSLEALSFSDMTEWEEW-IPCGAGTLPRRLLLLETLDITSCDQ--LLV----TIQCLPALSELQIDGCKRVVFSS 668 (777)
Q Consensus 596 ~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~~l~~L~~L~l~~c~~--l~~----~~~~l~~L~~L~l~~~~~l~~~~ 668 (777)
.+++|+.|++++++-.... .+ .......+++|++|++++|.- ++. .+..+++|++|++++|....
T Consensus 167 ---~l~~L~~L~Ls~N~l~~~~~~~--~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~--- 238 (310)
T 4glp_A 167 ---AFPALTSLDLSDNPGLGERGLM--AALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRA--- 238 (310)
T ss_dssp ---CCTTCCEEECCSCTTCHHHHHH--TTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCC---
T ss_pred ---cCCCCCEEECCCCCCccchhhh--HHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCc---
Confidence 2788899998887532210 00 012234577888888888852 222 23566888888888875221
Q ss_pred CCCccEEEEeecCcccccccc--CCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhc
Q 048758 669 PHLVHAVNVREQAYFWRSETR--LPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQAL 746 (777)
Q Consensus 669 ~~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~ 746 (777)
..+.. .+..+++|++|++++| .++.+|... +++|++|++++ +.++.+|. +
T Consensus 239 ----------------~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~ 290 (310)
T 4glp_A 239 ----------------TVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-P 290 (310)
T ss_dssp ----------------CCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC---------CSCCSCEECCS-CCCCSCCC-T
T ss_pred ----------------cchhhHHhccCcCcCCEEECCCC-CCCchhhhh---------cCCCCEEECCC-CcCCCCch-h
Confidence 11111 1223479999999996 677776433 37999999999 57888765 6
Q ss_pred CCCCCccEEEecCCC
Q 048758 747 LTLSSLTEMRIYGCT 761 (777)
Q Consensus 747 ~~l~~L~~L~l~~c~ 761 (777)
..+++|++|++++++
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 789999999999875
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=5.9e-13 Score=132.97 Aligned_cols=166 Identities=21% Similarity=0.214 Sum_probs=106.2
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEec
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKN 422 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l 422 (777)
+.++..++++++ .+..++ .+..+++|++|++++|.++.+| .+..+++|++|++++| .+..+|. +.++++|++|++
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 344566667766 666666 4677888888888888887776 6777888888888887 6777766 778888888888
Q ss_pred CCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEee
Q 048758 423 SNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEW 502 (777)
Q Consensus 423 ~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 502 (777)
++|. +..+|.... .+|+.|+ ++.
T Consensus 93 ~~N~-l~~l~~~~~--~~L~~L~------------------------------------------------------L~~ 115 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--ACLSRLF------------------------------------------------------LDN 115 (263)
T ss_dssp CSSC-CSCCTTCCC--SSCCEEE------------------------------------------------------CCS
T ss_pred CCCc-cCCcCcccc--CcccEEE------------------------------------------------------ccC
Confidence 8876 555443211 3333332 221
Q ss_pred ccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCC
Q 048758 503 SARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMD 582 (777)
Q Consensus 503 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 582 (777)
+... ....+..+++|+.|++++|.+..++. +. .+++|+.|++++|.. +.++.+..+++|++|++++|.
T Consensus 116 N~l~--------~~~~l~~l~~L~~L~Ls~N~i~~~~~-l~--~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 116 NELR--------DTDSLIHLKNLEILSIRNNKLKSIVM-LG--FLSKLEVLDLHGNEI-TNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCS--------BSGGGTTCTTCCEEECTTSCCCBCGG-GG--GCTTCCEEECTTSCC-CBCTTSTTCCCCCEEEEEEEE
T ss_pred CccC--------CChhhcCcccccEEECCCCcCCCChH-Hc--cCCCCCEEECCCCcC-cchHHhccCCCCCEEeCCCCc
Confidence 1100 01224455667777777777666652 33 477788888877763 344667777788888887764
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.33 E-value=1.4e-11 Score=122.31 Aligned_cols=98 Identities=28% Similarity=0.379 Sum_probs=77.5
Q ss_pred CceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L 420 (777)
+++++|+|++| .+..+ |..++++++|++|++++|.++.+++ .+.++++|++|++++| .+..+|. .+..+++|++|
T Consensus 35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhcccCCCCEE
Confidence 57999999999 56665 4568999999999999999997765 4789999999999999 6777764 47899999999
Q ss_pred ecCCcccccccCcc-cccccCCccc
Q 048758 421 KNSNVHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 421 ~l~~~~~~~~~p~~-~~~l~~L~~L 444 (777)
++++|. +..+|.. ++.+++|++|
T Consensus 113 ~L~~N~-l~~~~~~~~~~l~~L~~L 136 (251)
T 3m19_A 113 YLGGNQ-LKSLPSGVFDRLTKLKEL 136 (251)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EcCCCc-CCCcChhHhccCCcccEE
Confidence 999998 6665543 3444444433
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=1.3e-12 Score=145.79 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=139.3
Q ss_pred eeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCc
Q 048758 346 LRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNV 425 (777)
Q Consensus 346 L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~ 425 (777)
+..+.+..+ .+..++. +..+.+|+.|++++|.+..+| .+..+++|+.|++++| .+..+|. +..+++|+.|++++|
T Consensus 23 l~~l~l~~~-~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKK-SVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCS-CTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHhccCC-Ccccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCC
Confidence 344455554 4544433 678999999999999999987 6899999999999999 7777776 899999999999999
Q ss_pred ccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccC
Q 048758 426 HSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSAR 505 (777)
Q Consensus 426 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 505 (777)
. +..+| .+..+++|+.|.+..+.... ...+..+++|+.|+++.+..
T Consensus 98 ~-l~~l~-~l~~l~~L~~L~Ls~N~l~~--------------------------------l~~l~~l~~L~~L~Ls~N~l 143 (605)
T 1m9s_A 98 K-IKDLS-SLKDLKKLKSLSLEHNGISD--------------------------------INGLVHLPQLESLYLGNNKI 143 (605)
T ss_dssp C-CCCCT-TSTTCTTCCEEECTTSCCCC--------------------------------CGGGGGCTTCSEEECCSSCC
T ss_pred C-CCCCh-hhccCCCCCEEEecCCCCCC--------------------------------CccccCCCccCEEECCCCcc
Confidence 8 77665 67788888877543221110 01244566777888876532
Q ss_pred CCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCC
Q 048758 506 SERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMD 582 (777)
Q Consensus 506 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 582 (777)
.. ...+..+++|+.|++++|.+..++. +. .+++|+.|+|++|. +..++.+..+++|+.|+|++|.
T Consensus 144 ~~--------l~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 144 TD--------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CC--------CGGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCSEE
T ss_pred CC--------chhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCC-CCCChHHccCCCCCEEEccCCc
Confidence 21 2456678889999999998877766 43 58899999999986 4567788889999999999875
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=8.8e-14 Score=146.58 Aligned_cols=94 Identities=12% Similarity=0.175 Sum_probs=64.2
Q ss_pred HHHHHHccCCceeEEeecCccCccccC-----ccccCcC-ccCeeeccCCccccc-chhhhcc-----ccCcEEeeCCCc
Q 048758 335 ALQMLLNHLPRLRVFSLRGYCNIFNLP-----NEIGNLK-HLRCLNLSRTRIQIL-PESINSL-----YNLHTILLEDCW 402 (777)
Q Consensus 335 ~~~~~~~~l~~L~~L~L~~~~~l~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l~~~~ 402 (777)
.++.++...++|++|+|++| .+...+ ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|
T Consensus 13 ~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n- 90 (362)
T 3goz_A 13 PVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN- 90 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-
T ss_pred HHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-
Confidence 45555666667888888888 566655 5566777 788888888888754 4556654 88888888888
Q ss_pred Ccccc-chh----cccc-CcccEEecCCccccccc
Q 048758 403 KLKKL-CKD----MGNL-TKLRHLKNSNVHSLEEM 431 (777)
Q Consensus 403 ~l~~l-p~~----~~~L-~~L~~L~l~~~~~~~~~ 431 (777)
.+... +.. +..+ ++|++|++++|. +...
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~ 124 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence 45433 332 3334 788888888877 4433
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=4.4e-12 Score=128.81 Aligned_cols=160 Identities=19% Similarity=0.238 Sum_probs=111.4
Q ss_pred eecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCccccc
Q 048758 350 SLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLE 429 (777)
Q Consensus 350 ~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~ 429 (777)
.+..+ .+..+. .+..+.+|++|++++|.+..+| .+..+++|++|++++| .+..++. +.++++|++|++++|. +.
T Consensus 30 ~l~~~-~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~ 103 (291)
T 1h6t_A 30 NLKKK-SVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VK 103 (291)
T ss_dssp HTTCS-CTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CC
T ss_pred HhcCC-Cccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CC
Confidence 34444 344432 2568899999999999999886 5889999999999999 7777776 8999999999999988 65
Q ss_pred ccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEeeccCCCcc
Q 048758 430 EMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEWSARSERC 509 (777)
Q Consensus 430 ~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 509 (777)
.+|. ++.+++|++|++ +.+...
T Consensus 104 ~~~~-l~~l~~L~~L~L------------------------------------------------------~~n~i~--- 125 (291)
T 1h6t_A 104 DLSS-LKDLKKLKSLSL------------------------------------------------------EHNGIS--- 125 (291)
T ss_dssp CGGG-GTTCTTCCEEEC------------------------------------------------------TTSCCC---
T ss_pred CChh-hccCCCCCEEEC------------------------------------------------------CCCcCC---
Confidence 5543 555555555522 111000
Q ss_pred chHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCC
Q 048758 510 EFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMD 582 (777)
Q Consensus 510 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~ 582 (777)
....+..+++|+.|++++|.+..++ .+. .+++|+.|++++|.. +.++.+..+++|++|++++|.
T Consensus 126 -----~~~~l~~l~~L~~L~l~~n~l~~~~-~l~--~l~~L~~L~L~~N~l-~~~~~l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 126 -----DINGLVHLPQLESLYLGNNKITDIT-VLS--RLTKLDTLSLEDNQI-SDIVPLAGLTKLQNLYLSKNH 189 (291)
T ss_dssp -----CCGGGGGCTTCCEEECCSSCCCCCG-GGG--GCTTCSEEECCSSCC-CCCGGGTTCTTCCEEECCSSC
T ss_pred -----CChhhcCCCCCCEEEccCCcCCcch-hhc--cCCCCCEEEccCCcc-ccchhhcCCCccCEEECCCCc
Confidence 0122344567888888888877763 333 478888888888864 444447778888888888763
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=6e-12 Score=116.48 Aligned_cols=111 Identities=24% Similarity=0.284 Sum_probs=90.3
Q ss_pred HHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccc-cchhhhccccCcEEeeCCCcCccccc--hhccc
Q 048758 337 QMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQI-LPESINSLYNLHTILLEDCWKLKKLC--KDMGN 413 (777)
Q Consensus 337 ~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~~ 413 (777)
+..+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+.++++|++|++++| .+..+| ..+..
T Consensus 42 ~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp SSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred HHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 334677888999999988 57777 678889999999999999886 7777777999999999998 777776 57888
Q ss_pred cCcccEEecCCcccccccCc----ccccccCCcccCcEEecC
Q 048758 414 LTKLRHLKNSNVHSLEEMPK----GFGKLTSLLTLGRFVVGK 451 (777)
Q Consensus 414 L~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~~~~~~~ 451 (777)
+++|++|++++|. +..+|. .+..+++|+.|++..+..
T Consensus 119 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 119 LECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred CCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999999988 677766 678888888887776643
No 108
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=1e-12 Score=138.43 Aligned_cols=87 Identities=13% Similarity=0.224 Sum_probs=54.5
Q ss_pred HHHccCC-ceeEEeecCccCcccc-CccccCc-----CccCeeeccCCcccccc-hh----hhcc-ccCcEEeeCCCcCc
Q 048758 338 MLLNHLP-RLRVFSLRGYCNIFNL-PNEIGNL-----KHLRCLNLSRTRIQILP-ES----INSL-YNLHTILLEDCWKL 404 (777)
Q Consensus 338 ~~~~~l~-~L~~L~L~~~~~l~~l-p~~i~~l-----~~L~~L~L~~~~i~~lp-~~----i~~L-~~L~~L~l~~~~~l 404 (777)
..+.+++ +|++|+|++| .+... +..+..+ ++|++|++++|.++..+ .. +..+ ++|++|++++| .+
T Consensus 44 ~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l 121 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DF 121 (362)
T ss_dssp HHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CG
T ss_pred HHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cC
Confidence 5566777 7888888877 45443 4445544 77888888888777443 22 3333 67888888877 45
Q ss_pred cccch-h----ccc-cCcccEEecCCcc
Q 048758 405 KKLCK-D----MGN-LTKLRHLKNSNVH 426 (777)
Q Consensus 405 ~~lp~-~----~~~-L~~L~~L~l~~~~ 426 (777)
...+. . +.. .++|++|++++|.
T Consensus 122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 122 SSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp GGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred CcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 44432 2 223 2577778777776
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.25 E-value=5.6e-11 Score=115.94 Aligned_cols=81 Identities=26% Similarity=0.334 Sum_probs=57.9
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccchh-ccccCcccEEecCC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKNSN 424 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l~~ 424 (777)
+.++.+++ .+..+|..+. ++|++|++++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 22 ~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 45677666 6777776554 7788888888888766 556777888888888888 56666644 57788888888887
Q ss_pred cccccccC
Q 048758 425 VHSLEEMP 432 (777)
Q Consensus 425 ~~~~~~~p 432 (777)
|. +..+|
T Consensus 98 N~-l~~l~ 104 (229)
T 3e6j_A 98 NQ-LTVLP 104 (229)
T ss_dssp SC-CCCCC
T ss_pred Cc-CCccC
Confidence 76 44444
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.25 E-value=8.5e-11 Score=129.56 Aligned_cols=184 Identities=18% Similarity=0.152 Sum_probs=99.3
Q ss_pred CCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCCCCCCCCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCC
Q 048758 524 DVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKCTSLPSVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSL 603 (777)
Q Consensus 524 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 603 (777)
+|+.|+++++.+..+|..+ +++|+.|+|++|.. +.+| +.+++|++|++++|. ++.++. + ..+|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l-~~ip--~~l~~L~~L~Ls~N~-l~~ip~-l--------~~~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQNAL-ISLP--ELPASLEYLDACDNR-LSTLPE-L--------PASL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCC-SCCC--CCCTTCCEEECCSSC-CSCCCC-C--------CTTC
T ss_pred CccEEEeCCCCCCccCHhH----cCCCCEEECcCCCC-cccc--cccCCCCEEEccCCC-CCCcch-h--------hcCC
Confidence 6777777777776666543 35677777777753 3566 556777777777763 332332 2 2267
Q ss_pred ceeeccCccchhhhhccccCCCCCCCCCccEEEEecCC--CcccccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecC
Q 048758 604 EALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCD--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQA 681 (777)
Q Consensus 604 ~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~ 681 (777)
+.|+++++.- . .+|..+++|+.|++++|. .+|. .+++|++|++++|..
T Consensus 123 ~~L~Ls~N~l-~--------~lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L------------------ 172 (571)
T 3cvr_A 123 KHLDVDNNQL-T--------MLPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQL------------------ 172 (571)
T ss_dssp CEEECCSSCC-S--------CCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC------------------
T ss_pred CEEECCCCcC-C--------CCCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCC------------------
Confidence 7777766531 1 122345666666666664 1222 345666666666541
Q ss_pred ccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCCccEEEecCCC
Q 048758 682 YFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSSLTEMRIYGCT 761 (777)
Q Consensus 682 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~ 761 (777)
+.++. +. ++|++|++++| .+..+|. ... .+...++.|++|++++ +.++.+|..+..+++|+.|++++|+
T Consensus 173 --~~lp~--l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 173 --TFLPE--LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp --SCCCC--CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred --CCcch--hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCc
Confidence 11222 21 56666666664 4555543 100 0000012226666666 3566666666666667777766665
Q ss_pred CCcc
Q 048758 762 SLVS 765 (777)
Q Consensus 762 ~l~~ 765 (777)
.-+.
T Consensus 242 l~~~ 245 (571)
T 3cvr_A 242 LSSR 245 (571)
T ss_dssp CCHH
T ss_pred CCCc
Confidence 4333
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.24 E-value=7.1e-11 Score=114.36 Aligned_cols=93 Identities=23% Similarity=0.403 Sum_probs=65.3
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCcccc-chhccccCcccEEecCC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHLKNSN 424 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~~L~~L~l~~ 424 (777)
+.++++++ .+..+|..+. .+|+.|++++|.++.+|. .+..+++|++|++++| .+..+ |..+.++++|++|++++
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 46777766 6777887654 678888888888887765 5778888888888888 55555 56688888888888888
Q ss_pred cccccccCcc-cccccCCccc
Q 048758 425 VHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 425 ~~~~~~~p~~-~~~l~~L~~L 444 (777)
|. +..+|.. +..+++|++|
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEE
T ss_pred Cc-CCccCHhHccCCCCCCEE
Confidence 77 5555543 3334444333
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=6.1e-11 Score=113.99 Aligned_cols=93 Identities=28% Similarity=0.409 Sum_probs=59.4
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchh-ccccCcccEEecCC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKNSN 424 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l~~ 424 (777)
+.++.+++ .+..+|..+ ..+|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 10 ~~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 34556655 566666544 35778888888887766654 567788888888877 56666554 56777888888877
Q ss_pred cccccccCcc-cccccCCccc
Q 048758 425 VHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 425 ~~~~~~~p~~-~~~l~~L~~L 444 (777)
|. +..+|.. ++.+++|++|
T Consensus 86 n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 86 NQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp SC-CCCCCTTTTTTCTTCCEE
T ss_pred Cc-CCccCHhHhcCccCCCEE
Confidence 76 4444432 3344444333
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=1.6e-11 Score=122.61 Aligned_cols=99 Identities=23% Similarity=0.248 Sum_probs=81.2
Q ss_pred HccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
+..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|. +.++++|++|++++| .+..+|.. .. ++|++
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~-~~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGI-PS-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTC-CC-SSCCE
T ss_pred hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcc-cc-CcccE
Confidence 566788999999988 788888 68899999999999999998887 889999999999999 77777753 33 89999
Q ss_pred EecCCcccccccCcccccccCCcccCc
Q 048758 420 LKNSNVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 420 L~l~~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
|++++|. +..++ .++.+++|+.|++
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L~L 135 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEILSI 135 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEEEC
T ss_pred EEccCCc-cCCCh-hhcCcccccEEEC
Confidence 9999988 66654 4667777776643
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=5.4e-12 Score=114.12 Aligned_cols=105 Identities=23% Similarity=0.283 Sum_probs=82.6
Q ss_pred HHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccc-cchhhhccccCcEEeeCCCcCccccc--hhcccc
Q 048758 338 MLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQI-LPESINSLYNLHTILLEDCWKLKKLC--KDMGNL 414 (777)
Q Consensus 338 ~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~~~L 414 (777)
..+..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+..+++|++|++++| .+..+| ..++.+
T Consensus 36 ~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l 112 (149)
T 2je0_A 36 GLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKL 112 (149)
T ss_dssp SCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGC
T ss_pred HHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhC
Confidence 34677888888888888 67766 668888888999998888886 7777777888899998888 666654 668888
Q ss_pred CcccEEecCCcccccccCc----ccccccCCcccCc
Q 048758 415 TKLRHLKNSNVHSLEEMPK----GFGKLTSLLTLGR 446 (777)
Q Consensus 415 ~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~L~~ 446 (777)
++|++|++++|. +..+|. .++.+++|+.|++
T Consensus 113 ~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 113 ENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 888889888887 666665 4777788877754
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.22 E-value=7.7e-11 Score=114.12 Aligned_cols=93 Identities=18% Similarity=0.262 Sum_probs=65.9
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCcccccch--hhhccccCcEEeeCCCcCccccch-hccccCcccEEecC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE--SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLKNS 423 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~l~ 423 (777)
++++++++ .+..+|..+. ..+++|++++|.++.+++ .+..+++|++|++++| .+..++. .+.++++|++|+++
T Consensus 14 ~~l~~s~n-~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCC-CcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 47888877 7788887664 356888888888887743 3788888888888888 6666654 57888888888888
Q ss_pred CcccccccCcc-cccccCCccc
Q 048758 424 NVHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 424 ~~~~~~~~p~~-~~~l~~L~~L 444 (777)
+|. +..++.. ++.+++|++|
T Consensus 90 ~N~-l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 90 SNR-LENVQHKMFKGLESLKTL 110 (220)
T ss_dssp SSC-CCCCCGGGGTTCSSCCEE
T ss_pred CCc-cCccCHhHhcCCcCCCEE
Confidence 887 5544432 4444444433
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.19 E-value=4.4e-11 Score=113.77 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=106.8
Q ss_pred CccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-cCcccc
Q 048758 287 SQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEIG 365 (777)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~ 365 (777)
...++.+.+.++.... ++.+..+++++.|.+.+.. + ..++ .+..+++|++|++++| .+.. .|..++
T Consensus 43 l~~L~~L~l~~n~i~~---l~~l~~l~~L~~L~l~~n~-~-------~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~ 109 (197)
T 4ezg_A 43 MNSLTYITLANINVTD---LTGIEYAHNIKDLTINNIH-A-------TNYN-PISGLSNLERLRIMGK-DVTSDKIPNLS 109 (197)
T ss_dssp HHTCCEEEEESSCCSC---CTTGGGCTTCSEEEEESCC-C-------SCCG-GGTTCTTCCEEEEECT-TCBGGGSCCCT
T ss_pred cCCccEEeccCCCccC---hHHHhcCCCCCEEEccCCC-C-------Ccch-hhhcCCCCCEEEeECC-ccCcccChhhc
Confidence 4567777777765543 2246677888888654431 1 1111 3677888999999988 5554 677788
Q ss_pred CcCccCeeeccCCcccc-cchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcccccccCCccc
Q 048758 366 NLKHLRCLNLSRTRIQI-LPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFGKLTSLLTL 444 (777)
Q Consensus 366 ~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 444 (777)
.+++|++|++++|.++. .|..++.+++|++|++++|..+..+| .+..+++|++|++++|. +..++ .+..+++|++|
T Consensus 110 ~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQL 186 (197)
T ss_dssp TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEE
T ss_pred CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEE
Confidence 88999999999998884 67778888999999999885477776 58888999999998888 66665 67777888777
Q ss_pred CcEE
Q 048758 445 GRFV 448 (777)
Q Consensus 445 ~~~~ 448 (777)
++..
T Consensus 187 ~l~~ 190 (197)
T 4ezg_A 187 YAFS 190 (197)
T ss_dssp EECB
T ss_pred EeeC
Confidence 5543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=1.2e-12 Score=145.21 Aligned_cols=174 Identities=16% Similarity=0.084 Sum_probs=99.5
Q ss_pred ccCCceeEEeecCccCccccCccccCcCccCeeeccCCc--------------ccccchhhhccccCcEEe-eCCCcCcc
Q 048758 341 NHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTR--------------IQILPESINSLYNLHTIL-LEDCWKLK 405 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~--------------i~~lp~~i~~L~~L~~L~-l~~~~~l~ 405 (777)
...++|+.|+|++| .+..+|..|+++++|+.|+++++. ....|..++.+++|+.|+ ++.+ .+.
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 34667777777776 667777777777777777776553 224455667777777777 4443 222
Q ss_pred ccch------hccc--cCcccEEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccc
Q 048758 406 KLCK------DMGN--LTKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLEN 477 (777)
Q Consensus 406 ~lp~------~~~~--L~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~ 477 (777)
.++. .+.. ...|+.|++++|. +..+|. ++.+++|+.|++..+...
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N~l~------------------------- 476 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHNRLR------------------------- 476 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSSCCC-------------------------
T ss_pred hhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCccccc-------------------------
Confidence 2221 1111 1247777777776 666765 677776666633221100
Q ss_pred cCCcccchhhccCcccccccceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeC
Q 048758 478 VKDVGDASEAQLNNKVNLEALILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEG 557 (777)
Q Consensus 478 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~ 557 (777)
..+..++.+++|+.|++++|.+..+| .+. .+++|+.|+|++
T Consensus 477 ------------------------------------~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~--~l~~L~~L~Ls~ 517 (567)
T 1dce_A 477 ------------------------------------ALPPALAALRCLEVLQASDNALENVD-GVA--NLPRLQELLLCN 517 (567)
T ss_dssp ------------------------------------CCCGGGGGCTTCCEEECCSSCCCCCG-GGT--TCSSCCEEECCS
T ss_pred ------------------------------------ccchhhhcCCCCCEEECCCCCCCCCc-ccC--CCCCCcEEECCC
Confidence 00112333455666666666666665 333 466777777776
Q ss_pred CCCCCCC-C-CCCCCCCcceeeecCCC
Q 048758 558 CGKCTSL-P-SVGQLPFLKELLISGMD 582 (777)
Q Consensus 558 ~~~~~~l-~-~~~~l~~L~~L~L~~~~ 582 (777)
|...... | .++.+++|++|+|++|.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 6543332 3 56667777777777664
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=3.2e-11 Score=126.78 Aligned_cols=170 Identities=22% Similarity=0.284 Sum_probs=98.0
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCcccccchh-hh-ccccCcEEeeCCCcCccccch-hccccCcccEEecC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES-IN-SLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLKNS 423 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~l~ 423 (777)
++++++++ .+..+|..+. ..+++|+|++|.++.++.. +. ++.+|++|++++| .+..++. .+.++++|++|+++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 45666665 6666776543 3467777777777766554 33 6777777777777 5555553 46777777777777
Q ss_pred CcccccccCc-ccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCcccccccceEee
Q 048758 424 NVHSLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEALILEW 502 (777)
Q Consensus 424 ~~~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 502 (777)
+|. +..++. .+..+++|+.|++..+..
T Consensus 97 ~N~-l~~~~~~~~~~l~~L~~L~L~~N~i--------------------------------------------------- 124 (361)
T 2xot_A 97 SNH-LHTLDEFLFSDLQALEVLLLYNNHI--------------------------------------------------- 124 (361)
T ss_dssp SSC-CCEECTTTTTTCTTCCEEECCSSCC---------------------------------------------------
T ss_pred CCc-CCcCCHHHhCCCcCCCEEECCCCcc---------------------------------------------------
Confidence 776 555543 255555555553211100
Q ss_pred ccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCC--CCCCCeeEEEEeCCCCCCCCC--CCCCCCC--ccee
Q 048758 503 SARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGD--SSFSKLVQLKLEGCGKCTSLP--SVGQLPF--LKEL 576 (777)
Q Consensus 503 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~--~~l~~L~~L~L~~~~~~~~l~--~~~~l~~--L~~L 576 (777)
.......+..+++|+.|++++|.+..+|..... ..+++|+.|+|++|.. +.+| .+..++. |+.|
T Consensus 125 ---------~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 125 ---------VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp ---------CEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CCCCHHHHHHSCHHHHTTE
T ss_pred ---------cEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHHHhhhccHhhcceE
Confidence 000012334456677777777777666655421 2467777777777753 3444 3444555 3677
Q ss_pred eecCCC
Q 048758 577 LISGMD 582 (777)
Q Consensus 577 ~L~~~~ 582 (777)
+|++|+
T Consensus 195 ~l~~N~ 200 (361)
T 2xot_A 195 YLHNNP 200 (361)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 777654
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=3e-11 Score=112.55 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=88.0
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhh-hccccCcEEeeCCCcCccccch--hccccCcccE
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLEDCWKLKKLCK--DMGNLTKLRH 419 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lp~--~~~~L~~L~~ 419 (777)
.++|++|++++| .+..+ ..++.+++|++|++++|.++.+|+.+ ..+++|++|++++| .+..+|. .+..+++|++
T Consensus 41 ~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 41 LDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp TTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCE
T ss_pred CCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCE
Confidence 448999999988 77777 56889999999999999999888665 88999999999999 7788886 7889999999
Q ss_pred EecCCcccccccCcc----cccccCCcccCcEEec
Q 048758 420 LKNSNVHSLEEMPKG----FGKLTSLLTLGRFVVG 450 (777)
Q Consensus 420 L~l~~~~~~~~~p~~----~~~l~~L~~L~~~~~~ 450 (777)
|++++|. +..+|.. ++.+++|+.|++..+.
T Consensus 118 L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 118 LCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999998 7777774 7888889888776553
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.12 E-value=3.6e-10 Score=108.57 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=83.1
Q ss_pred CCeeEEEEeCCCCCCCCC--CCCCCCCcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCC
Q 048758 548 SKLVQLKLEGCGKCTSLP--SVGQLPFLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTL 625 (777)
Q Consensus 548 ~~L~~L~L~~~~~~~~l~--~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 625 (777)
++|+.|++++|... .++ .++.+++|++|++++|. ++.++...+. .+++|++|+++++. +..+ ....
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~-----~l~~L~~L~Ls~n~-l~~~----~~~~ 95 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFN-----KLTSLTYLNLSTNQ-LQSL----PNGV 95 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTT-----TCTTCCEEECCSSC-CCCC----CTTT
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCc-cCccChhhcC-----CCCCcCEEECCCCc-CCcc----CHhH
Confidence 45666666665432 232 24555666666666543 2222221111 14555555555442 1110 0111
Q ss_pred CCCCCCccEEEEecCC--Ccc-cccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCCCCCCeEEc
Q 048758 626 PRRLLLLETLDITSCD--QLL-VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDIRSLNRLQI 702 (777)
Q Consensus 626 ~~~l~~L~~L~l~~c~--~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 702 (777)
...+++|++|++++|. .++ ..+..+++|++|++++|. ++..+...+..+++|++|++
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--------------------l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--------------------LKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--------------------CSCCCTTTTTTCTTCCEEEC
T ss_pred hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--------------------cceeCHHHhccCCCccEEEe
Confidence 1234556666665553 122 234556667777666653 22344455677888888888
Q ss_pred cCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCchhhcCCCCC
Q 048758 703 SRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLPQALLTLSS 751 (777)
Q Consensus 703 ~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp~~~~~l~~ 751 (777)
++++-.. .+ +.|++|+++.+..-+.+|..++.++.
T Consensus 156 ~~N~~~~-------------~~-~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 156 HDNPWDC-------------TC-PGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CSCCBCC-------------CT-TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCeec-------------CC-CCHHHHHHHHHhCCceeeccCccccC
Confidence 8863221 11 67888888886666688877776655
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.12 E-value=7.7e-11 Score=114.96 Aligned_cols=106 Identities=25% Similarity=0.413 Sum_probs=75.6
Q ss_pred HHHccCCceeEEeecCccCccccCc-cccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchhccccC
Q 048758 338 MLLNHLPRLRVFSLRGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKDMGNLT 415 (777)
Q Consensus 338 ~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~~~L~ 415 (777)
..|.++++|++|+|++| .+..+|. .+..+++|++|+|++|.++.+|.. +..+++|++|++++| .+..+|..+.+++
T Consensus 58 ~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 135 (229)
T 3e6j_A 58 GVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRGIERLT 135 (229)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTTGGGCT
T ss_pred HHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-cccccCcccccCC
Confidence 44667777888888877 5666664 357777888888888877777654 567788888888877 6677777777788
Q ss_pred cccEEecCCcccccccCc-ccccccCCcccCc
Q 048758 416 KLRHLKNSNVHSLEEMPK-GFGKLTSLLTLGR 446 (777)
Q Consensus 416 ~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~~ 446 (777)
+|++|++++|. +..+|. .+..+++|+.|.+
T Consensus 136 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 136 HLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 88888888776 666654 3666666666644
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=6.6e-11 Score=135.61 Aligned_cols=113 Identities=23% Similarity=0.260 Sum_probs=95.9
Q ss_pred HHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhcccc
Q 048758 335 ALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNL 414 (777)
Q Consensus 335 ~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L 414 (777)
.++..+..++.|++|+|++| .+..+|..+.++++|++|+|++|.++.+|..+++|++|++|+|++| .+..+|..+++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCC
Confidence 45677889999999999998 6788998899999999999999999999999999999999999999 677999999999
Q ss_pred CcccEEecCCcccccccCcccccccCCcccCcEEec
Q 048758 415 TKLRHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVG 450 (777)
Q Consensus 415 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~ 450 (777)
++|++|++++|. +..+|.+|+.+++|+.|++..+.
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence 999999999998 78999989999999988665443
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=4.4e-11 Score=108.04 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=89.9
Q ss_pred ccCCceeEEeecCccCcc--ccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccc-cchhccccCcc
Q 048758 341 NHLPRLRVFSLRGYCNIF--NLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKK-LCKDMGNLTKL 417 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lp~~~~~L~~L 417 (777)
...++|++|++++| .+. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++| .+.. +|..++++++|
T Consensus 14 ~~~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 14 RTPSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CCGGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred CCCccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence 34578999999999 666 7999889999999999999999988 78899999999999999 5655 88878889999
Q ss_pred cEEecCCcccccccC--cccccccCCcccCcEEe
Q 048758 418 RHLKNSNVHSLEEMP--KGFGKLTSLLTLGRFVV 449 (777)
Q Consensus 418 ~~L~l~~~~~~~~~p--~~~~~l~~L~~L~~~~~ 449 (777)
++|++++|. +..+| ..++.+++|++|++..+
T Consensus 91 ~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N 123 (149)
T 2je0_A 91 THLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC 123 (149)
T ss_dssp CEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC
T ss_pred CEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC
Confidence 999999998 77654 67888888888855433
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.10 E-value=5.8e-11 Score=109.76 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=106.7
Q ss_pred cCccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-cCccc
Q 048758 286 FSQSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-LPNEI 364 (777)
Q Consensus 286 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i 364 (777)
.+..++.+.+.++..........+..+++|+.|.+.. +.+..- ..+..+++|++|++++| .+.. +|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~------n~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLIN------VGLISV---SNLPKLPKLKKLELSEN-RIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEES------SCCCCC---SSCCCCSSCCEEEEESC-CCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcC------CCCCCh---hhhccCCCCCEEECcCC-cCchHHHHHH
Confidence 3467788887777654222223356788888885544 322211 45788999999999999 6666 78777
Q ss_pred cCcCccCeeeccCCcccccc--hhhhccccCcEEeeCCCcCccccch----hccccCcccEEecCCcccccccCcc
Q 048758 365 GNLKHLRCLNLSRTRIQILP--ESINSLYNLHTILLEDCWKLKKLCK----DMGNLTKLRHLKNSNVHSLEEMPKG 434 (777)
Q Consensus 365 ~~l~~L~~L~L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~----~~~~L~~L~~L~l~~~~~~~~~p~~ 434 (777)
+.+++|++|++++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++++|. ...+|.+
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 88999999999999999887 78999999999999999 7777776 68999999999999998 6766654
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.10 E-value=7.5e-11 Score=114.19 Aligned_cols=106 Identities=20% Similarity=0.358 Sum_probs=83.7
Q ss_pred HHccCCceeEEeecCccCccccCc-cccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCcccc-chhccccC
Q 048758 339 LLNHLPRLRVFSLRGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKL-CKDMGNLT 415 (777)
Q Consensus 339 ~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~ 415 (777)
.|.++++|++|+|++| .+..++. .|+.+++|++|+|++|.++.+|.. +..+++|++|++++| .+..+ |..+.+++
T Consensus 52 ~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~ 129 (220)
T 2v70_A 52 IFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLS 129 (220)
T ss_dssp CGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCT
T ss_pred hhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCc
Confidence 4678888999999888 6666554 688889999999999998877654 788899999999998 55555 56688889
Q ss_pred cccEEecCCccccccc-CcccccccCCcccCcE
Q 048758 416 KLRHLKNSNVHSLEEM-PKGFGKLTSLLTLGRF 447 (777)
Q Consensus 416 ~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~~~ 447 (777)
+|++|++++|. +..+ |..+..+++|+.|++.
T Consensus 130 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 130 SVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCSEEECTTSC-CCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCc-CCEECHHHhcCCCCCCEEEec
Confidence 99999999888 5555 6668888888877554
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.06 E-value=1.3e-10 Score=112.59 Aligned_cols=107 Identities=27% Similarity=0.420 Sum_probs=78.8
Q ss_pred HHHccCCceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCcccc-chhcccc
Q 048758 338 MLLNHLPRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKL-CKDMGNL 414 (777)
Q Consensus 338 ~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l-p~~~~~L 414 (777)
..|..+++|++|+|++| .+..+ |..|.++++|++|+|++|.++.+|.. +..+++|++|++++| .+..+ |..+..+
T Consensus 50 ~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l 127 (220)
T 2v9t_B 50 GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDL 127 (220)
T ss_dssp TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCC
Confidence 34677888888888887 55554 67788888888888888888877765 467888888888888 55555 4557788
Q ss_pred CcccEEecCCcccccccCcc-cccccCCcccCcE
Q 048758 415 TKLRHLKNSNVHSLEEMPKG-FGKLTSLLTLGRF 447 (777)
Q Consensus 415 ~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~~~ 447 (777)
++|++|++++|. +..++.. +..+++|+.|++.
T Consensus 128 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 128 HNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeC
Confidence 888888888887 6666543 6777777776543
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.03 E-value=2e-10 Score=106.98 Aligned_cols=104 Identities=25% Similarity=0.368 Sum_probs=88.3
Q ss_pred HccCCceeEEeecCccCccccCccccCcC-ccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhc-cccCcc
Q 048758 340 LNHLPRLRVFSLRGYCNIFNLPNEIGNLK-HLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDM-GNLTKL 417 (777)
Q Consensus 340 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~-~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~-~~L~~L 417 (777)
+.++.+|++|++++| .+..+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++| .+..+|..+ +.+++|
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 456789999999999 7888875 55555 999999999999988 68899999999999999 788888665 899999
Q ss_pred cEEecCCcccccccCc--ccccccCCcccCcEE
Q 048758 418 RHLKNSNVHSLEEMPK--GFGKLTSLLTLGRFV 448 (777)
Q Consensus 418 ~~L~l~~~~~~~~~p~--~~~~l~~L~~L~~~~ 448 (777)
++|++++|. +..+|. .++.+++|+.|++..
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCS
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecC
Confidence 999999998 788876 677888888775543
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.00 E-value=3.5e-10 Score=125.39 Aligned_cols=102 Identities=23% Similarity=0.276 Sum_probs=92.9
Q ss_pred ceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcccEEecCC
Q 048758 345 RLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSN 424 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~ 424 (777)
.|++|+|++| .+..+|. ++.+++|++|+|++|.++.+|..++++++|++|++++| .++.+| .++++++|+.|++++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCC
Confidence 5999999999 8888997 99999999999999999999999999999999999999 788898 799999999999999
Q ss_pred ccccccc--CcccccccCCcccCcEEecC
Q 048758 425 VHSLEEM--PKGFGKLTSLLTLGRFVVGK 451 (777)
Q Consensus 425 ~~~~~~~--p~~~~~l~~L~~L~~~~~~~ 451 (777)
|. +..+ |..++.+++|+.|++..+..
T Consensus 518 N~-l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 518 NR-LQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp SC-CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CC-CCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 98 7776 88899999999997765543
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.98 E-value=8.1e-10 Score=104.30 Aligned_cols=101 Identities=28% Similarity=0.422 Sum_probs=80.5
Q ss_pred CceeEEeecCccCccccCccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccEEe
Q 048758 344 PRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLK 421 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~ 421 (777)
++|++|++++| .+..+|..+.++++|++|+|++|.++.++. .+.++++|++|++++| .+..+|. .+.++++|++|+
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 46888899888 778888888888899999999998887764 5888889999999988 6666654 588888999999
Q ss_pred cCCcccccccCcc-cccccCCcccCcE
Q 048758 422 NSNVHSLEEMPKG-FGKLTSLLTLGRF 447 (777)
Q Consensus 422 l~~~~~~~~~p~~-~~~l~~L~~L~~~ 447 (777)
+++|. +..+|.. +..+++|+.|++.
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 109 LHGND-ISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCC-CCeeChhhhhcCccccEEEeC
Confidence 98888 6777764 6777777777543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.98 E-value=3.2e-09 Score=100.20 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=63.4
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccch-hccccCcccEEecCCc
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLKNSNV 425 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~l~~~ 425 (777)
++++++++ .+..+|..+. .+|++|++++|.++.+|..+.++++|++|++++| .+..++. .+.++++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 57788877 7888887654 5888899999888888888888888889988888 6666654 4788888888888888
Q ss_pred ccccccC
Q 048758 426 HSLEEMP 432 (777)
Q Consensus 426 ~~~~~~p 432 (777)
. +..++
T Consensus 89 ~-l~~i~ 94 (193)
T 2wfh_A 89 R-LRCIP 94 (193)
T ss_dssp C-CCBCC
T ss_pred c-cCEeC
Confidence 7 44443
No 131
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.95 E-value=7.4e-10 Score=116.30 Aligned_cols=100 Identities=22% Similarity=0.249 Sum_probs=81.6
Q ss_pred CceeEEeecCccCccccCcc-cc-CcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccE
Q 048758 344 PRLRVFSLRGYCNIFNLPNE-IG-NLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRH 419 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~~-i~-~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~ 419 (777)
+.+++|+|++| .+..++.. +. ++++|++|+|++|.++.+++ .+.++++|++|++++| .+..+|. .+.++++|++
T Consensus 39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCE
Confidence 45899999998 77776654 55 89999999999999998874 5899999999999999 6777765 4789999999
Q ss_pred EecCCccccccc-CcccccccCCcccCc
Q 048758 420 LKNSNVHSLEEM-PKGFGKLTSLLTLGR 446 (777)
Q Consensus 420 L~l~~~~~~~~~-p~~~~~l~~L~~L~~ 446 (777)
|++++|. +..+ |..+..+++|+.|++
T Consensus 117 L~L~~N~-i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 117 LLLYNNH-IVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp EECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred EECCCCc-ccEECHHHhCCcccCCEEEC
Confidence 9999998 5555 456777888877744
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.92 E-value=1.7e-09 Score=102.05 Aligned_cols=100 Identities=22% Similarity=0.341 Sum_probs=72.1
Q ss_pred ceeEEeecCccCccccCcc--ccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccch-hccccCcccEE
Q 048758 345 RLRVFSLRGYCNIFNLPNE--IGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHL 420 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L 420 (777)
+|++|++++| .+..++.. ++.+++|++|++++|.++.+ |..+.++++|++|++++| .+..++. .+.++++|++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 6788888877 66666643 77888888888888888766 567778888888888888 5555554 37778888888
Q ss_pred ecCCcccccccCcccccccCCcccCc
Q 048758 421 KNSNVHSLEEMPKGFGKLTSLLTLGR 446 (777)
Q Consensus 421 ~l~~~~~~~~~p~~~~~l~~L~~L~~ 446 (777)
++++|......|..++.+++|++|++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 88888733334566777777777644
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.92 E-value=3.9e-10 Score=129.17 Aligned_cols=119 Identities=24% Similarity=0.275 Sum_probs=95.9
Q ss_pred hhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhh
Q 048758 308 FICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESI 387 (777)
Q Consensus 308 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i 387 (777)
.+..++.|+.|.+. .+.+. .++..+.++++|++|+|++| .+..+|..|+++++|++|+|++|.++.+|..+
T Consensus 219 ~~~~l~~L~~L~Ls------~n~l~--~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 219 SKYDDQLWHALDLS------NLQIF--NISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp ---CCCCCCEEECT------TSCCS--CCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred hhccCCCCcEEECC------CCCCC--CCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 45577778887443 33332 22223458999999999999 78899999999999999999999999999999
Q ss_pred hccccCcEEeeCCCcCccccchhccccCcccEEecCCcccccccCcccc
Q 048758 388 NSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNSNVHSLEEMPKGFG 436 (777)
Q Consensus 388 ~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~~~ 436 (777)
++|.+|++|+|++| .+..+|..+++|++|++|++++|.....+|..+.
T Consensus 290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 99999999999999 7889999999999999999999994445554443
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=2.9e-09 Score=110.27 Aligned_cols=96 Identities=10% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhc--------cccCcEEeeCCCcCccccch-hccc
Q 048758 343 LPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINS--------LYNLHTILLEDCWKLKKLCK-DMGN 413 (777)
Q Consensus 343 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~--------L~~L~~L~l~~~~~l~~lp~-~~~~ 413 (777)
+++|++|+|++| .+......-+.++.++++.+..+.|. +..+.+ +.+|+.|++.. .++.++. .|.+
T Consensus 48 l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVP--AYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEEC--TTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcc-eeEEecCccccccccccccccccccC--HHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 889999999988 55521111122333555555555322 123555 88888888887 5666665 3778
Q ss_pred cCcccEEecCCcccccccCcc-cccccCCccc
Q 048758 414 LTKLRHLKNSNVHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 414 L~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L 444 (777)
+++|+.|++..+. +..++.. |..+.++..+
T Consensus 123 ~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 123 CDNLKICQIRKKT-APNLLPEALADSVTAIFI 153 (329)
T ss_dssp CTTCCEEEBCCSS-CCEECTTSSCTTTCEEEE
T ss_pred CcccceEEcCCCC-ccccchhhhcCCCceEEe
Confidence 8888888888877 4455433 5554444443
No 135
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.88 E-value=4e-09 Score=99.53 Aligned_cols=95 Identities=18% Similarity=0.249 Sum_probs=80.1
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCcccccchh--hhccccCcEEeeCCCcCcccc-chhccccCcccEEecC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES--INSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHLKNS 423 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~~~L~~L~~L~l~ 423 (777)
++++++++ .++.+|..+.. +|++|++++|.++.++.. ++.+++|++|++++| .+..+ |..+.++++|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 78999988 78999987755 999999999999988864 899999999999999 66655 6779999999999999
Q ss_pred CcccccccCc-ccccccCCcccCc
Q 048758 424 NVHSLEEMPK-GFGKLTSLLTLGR 446 (777)
Q Consensus 424 ~~~~~~~~p~-~~~~l~~L~~L~~ 446 (777)
+|. +..++. .++.+++|++|++
T Consensus 87 ~N~-l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 87 ENK-IKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp SCC-CCEECSSSSTTCTTCCEEEC
T ss_pred CCc-CCccCHHHhcCCCCCCEEEC
Confidence 999 665554 4777888877754
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.88 E-value=2.6e-09 Score=98.81 Aligned_cols=81 Identities=23% Similarity=0.352 Sum_probs=41.9
Q ss_pred CceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchh-ccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L 420 (777)
++|++|+|++| .+..+ |..|+++++|++|+|++|+++.+|.. +.++++|++|++++| .+..+|.. +.++++|++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEE
Confidence 44555555555 34443 34455555555555555555555443 245555555555555 44444443 4555555555
Q ss_pred ecCCcc
Q 048758 421 KNSNVH 426 (777)
Q Consensus 421 ~l~~~~ 426 (777)
++++|.
T Consensus 111 ~L~~N~ 116 (174)
T 2r9u_A 111 YLYNNP 116 (174)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 555554
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=7.7e-11 Score=112.19 Aligned_cols=104 Identities=21% Similarity=0.254 Sum_probs=77.5
Q ss_pred HHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhhhccccCcEEeeCCCcCccccchhccccCcc
Q 048758 338 MLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKL 417 (777)
Q Consensus 338 ~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L 417 (777)
..+..+++|++|++++| .+..+| .++.+++|++|++++|.++.+|..+..+++|++|++++| .+..+| .++++++|
T Consensus 42 ~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHS
T ss_pred HHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCC
Confidence 35677888888888877 677777 677888888888888888888877777788888888888 666666 57778888
Q ss_pred cEEecCCcccccccCc--ccccccCCcccCc
Q 048758 418 RHLKNSNVHSLEEMPK--GFGKLTSLLTLGR 446 (777)
Q Consensus 418 ~~L~l~~~~~~~~~p~--~~~~l~~L~~L~~ 446 (777)
++|++++|. +..++. .+..+++|++|++
T Consensus 118 ~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 118 RVLYMSNNK-ITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp SEEEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred CEEECCCCc-CCchhHHHHHhcCCCCCEEEe
Confidence 888888877 555543 4666666666644
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.87 E-value=8.8e-11 Score=111.78 Aligned_cols=126 Identities=20% Similarity=0.243 Sum_probs=100.9
Q ss_pred hhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccCccccCcCccCeeeccCCcccccchhh
Q 048758 308 FICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESI 387 (777)
Q Consensus 308 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i 387 (777)
.+..+++++.|.+.. +.+.. ++ .+.++++|++|++++| .+..+|..+..+++|++|++++|.++.+| .+
T Consensus 43 ~~~~l~~L~~L~ls~------n~l~~--l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALST------NNIEK--IS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSE------EEESC--CC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HHhcCCCCCEEECCC------CCCcc--cc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 567888999885433 33322 23 5788999999999998 78899988888999999999999999987 78
Q ss_pred hccccCcEEeeCCCcCccccch--hccccCcccEEecCCcccccccCcc----------cccccCCcccC
Q 048758 388 NSLYNLHTILLEDCWKLKKLCK--DMGNLTKLRHLKNSNVHSLEEMPKG----------FGKLTSLLTLG 445 (777)
Q Consensus 388 ~~L~~L~~L~l~~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~p~~----------~~~l~~L~~L~ 445 (777)
..+++|++|++++| .+..+|. .+..+++|++|++++|......|.. +..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99999999999999 7777664 6899999999999999833333321 66777777774
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.85 E-value=3.7e-09 Score=97.45 Aligned_cols=95 Identities=25% Similarity=0.392 Sum_probs=51.3
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccchh-ccccCcccEEecCC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKNSN 424 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l~~ 424 (777)
++++++++ .+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 12 ~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 45555555 5555555442 5556666666666555 334555666666666665 45455443 35566666666666
Q ss_pred cccccccCcc-cccccCCcccCc
Q 048758 425 VHSLEEMPKG-FGKLTSLLTLGR 446 (777)
Q Consensus 425 ~~~~~~~p~~-~~~l~~L~~L~~ 446 (777)
|. +..+|.. +..+++|+.|++
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEEC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEe
Confidence 55 4444443 555555555543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.83 E-value=5e-09 Score=96.89 Aligned_cols=99 Identities=24% Similarity=0.401 Sum_probs=86.1
Q ss_pred eEEeecCccCccccCccccCcCccCeeeccCCccccc-chhhhccccCcEEeeCCCcCccccchh-ccccCcccEEecCC
Q 048758 347 RVFSLRGYCNIFNLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKNSN 424 (777)
Q Consensus 347 ~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l~~ 424 (777)
++++++++ .+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|++++| .+..+|.. +.++++|++|++++
T Consensus 15 ~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 68999988 7899998775 8999999999999987 567899999999999999 88888876 58999999999999
Q ss_pred cccccccCcc-cccccCCcccCcEEec
Q 048758 425 VHSLEEMPKG-FGKLTSLLTLGRFVVG 450 (777)
Q Consensus 425 ~~~~~~~p~~-~~~l~~L~~L~~~~~~ 450 (777)
|. +..+|.. ++.+++|+.|++..+.
T Consensus 91 N~-l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 91 NH-LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SC-CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred Cc-cceeCHHHhccccCCCEEEeCCCC
Confidence 98 7888876 8889999998765543
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.78 E-value=1.1e-08 Score=95.14 Aligned_cols=101 Identities=30% Similarity=0.473 Sum_probs=71.8
Q ss_pred CceeEEeecCccCccccCc-cccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchh-ccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L 420 (777)
++|++|++++| .+..+|. .++.+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +.++++|++|
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCEE
Confidence 56788888877 5666554 357778888888888888777654 577888888888887 56666654 5778888888
Q ss_pred ecCCcccccccCcc-cccccCCcccCcE
Q 048758 421 KNSNVHSLEEMPKG-FGKLTSLLTLGRF 447 (777)
Q Consensus 421 ~l~~~~~~~~~p~~-~~~l~~L~~L~~~ 447 (777)
++++|. +..+|.. +..+++|++|++.
T Consensus 106 ~l~~N~-l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 106 ALDTNQ-LKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred ECcCCc-ceEeCHHHhcCCcccCEEEec
Confidence 888876 6666655 4667777766543
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.78 E-value=3.4e-08 Score=102.10 Aligned_cols=89 Identities=12% Similarity=0.127 Sum_probs=45.0
Q ss_pred CCccEEEEeecCccccccccCCCCCCCCCeEEccCCCCCccccccccccCCCCCcCCccc-EEeeecCCCCCCch-hhcC
Q 048758 670 HLVHAVNVREQAYFWRSETRLPQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQ-FLELRNCEGLTRLP-QALL 747 (777)
Q Consensus 670 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~-~L~l~~c~~l~~lp-~~~~ 747 (777)
+.|+.+++.+|. ++..+...|.++++|++|++.+ +++.++..- +..+ .+|+ .+++.+ +++.|+ ..+.
T Consensus 226 ~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~a-----F~~~-~~L~~~l~l~~--~l~~I~~~aF~ 294 (329)
T 3sb4_A 226 PNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRV-----FSNC-GRLAGTLELPA--SVTAIEFGAFM 294 (329)
T ss_dssp TTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCT--TCCEECTTT-----TTTC-TTCCEEEEECT--TCCEECTTTTT
T ss_pred CCCeEEECCCCC-cceecHhhhhCCCCCCEEECCc--ccceehHHH-----hhCC-hhccEEEEEcc--cceEEchhhhh
Confidence 344444444332 3444555566666666666655 255443322 1222 4565 666655 455553 4455
Q ss_pred CCCCccEEEecCCCCCccccCCC
Q 048758 748 TLSSLTEMRIYGCTSLVSFPEVA 770 (777)
Q Consensus 748 ~l~~L~~L~l~~c~~l~~lp~~~ 770 (777)
+|++|+.|++.+ +.++.|+...
T Consensus 295 ~c~~L~~l~l~~-n~i~~I~~~a 316 (329)
T 3sb4_A 295 GCDNLRYVLATG-DKITTLGDEL 316 (329)
T ss_dssp TCTTEEEEEECS-SCCCEECTTT
T ss_pred CCccCCEEEeCC-CccCccchhh
Confidence 666666666543 3455555543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.74 E-value=1.5e-08 Score=93.32 Aligned_cols=86 Identities=26% Similarity=0.374 Sum_probs=75.0
Q ss_pred CceeEEeecCccCcccc-CccccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchh-ccccCcccEE
Q 048758 344 PRLRVFSLRGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHL 420 (777)
Q Consensus 344 ~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L 420 (777)
++|++|+|++| .+..+ |..|..+++|++|+|++|+++.+|+. +..+++|++|++++| .+..+|.. +.++++|++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 68999999999 77776 67789999999999999999998876 589999999999999 78888764 8899999999
Q ss_pred ecCCcccccccC
Q 048758 421 KNSNVHSLEEMP 432 (777)
Q Consensus 421 ~l~~~~~~~~~p 432 (777)
++++|. +...+
T Consensus 108 ~L~~N~-~~c~c 118 (170)
T 3g39_A 108 WLLNNP-WDCAC 118 (170)
T ss_dssp ECCSSC-BCTTB
T ss_pred EeCCCC-CCCCc
Confidence 999998 44333
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.74 E-value=1.1e-08 Score=95.23 Aligned_cols=88 Identities=25% Similarity=0.390 Sum_probs=77.1
Q ss_pred HHHHccCCceeEEeecCccCccccCcc-ccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCCcCccccchh-ccc
Q 048758 337 QMLLNHLPRLRVFSLRGYCNIFNLPNE-IGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKD-MGN 413 (777)
Q Consensus 337 ~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~-~~~ 413 (777)
+..+.++++|++|++++| .+..+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++| .+..+|.. +..
T Consensus 45 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~ 122 (177)
T 2o6r_A 45 HGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDR 122 (177)
T ss_dssp TTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred HHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcC
Confidence 345788999999999998 77777654 68999999999999999988765 688999999999999 77888876 578
Q ss_pred cCcccEEecCCcc
Q 048758 414 LTKLRHLKNSNVH 426 (777)
Q Consensus 414 L~~L~~L~l~~~~ 426 (777)
+++|++|++++|.
T Consensus 123 l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 123 LTSLQKIWLHTNP 135 (177)
T ss_dssp CTTCCEEECCSSC
T ss_pred CcccCEEEecCCC
Confidence 9999999999998
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.43 E-value=2.4e-07 Score=96.59 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=55.5
Q ss_pred HccCCceeEEeecC-ccCccccC-ccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccchhccccCc
Q 048758 340 LNHLPRLRVFSLRG-YCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKDMGNLTK 416 (777)
Q Consensus 340 ~~~l~~L~~L~L~~-~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~ 416 (777)
+..+++|++|+|++ | .+..+| ..|+++.+|++|+|++|.++.+|+ .+.+|++|++|+|++| .+..+|..+.....
T Consensus 27 l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~ 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS 104 (347)
T ss_dssp SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTTCSCC
T ss_pred CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHcccCC
Confidence 66667777777775 5 566655 456777777777777777775544 4567777777777777 56666655433333
Q ss_pred ccEEecCCcc
Q 048758 417 LRHLKNSNVH 426 (777)
Q Consensus 417 L~~L~l~~~~ 426 (777)
|+.|++.+|.
T Consensus 105 L~~l~l~~N~ 114 (347)
T 2ifg_A 105 LQELVLSGNP 114 (347)
T ss_dssp CCEEECCSSC
T ss_pred ceEEEeeCCC
Confidence 7777777666
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.39 E-value=3e-07 Score=95.88 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=79.7
Q ss_pred EEeecCccCccccCccccCcCccCeeeccC-Ccccccc-hhhhccccCcEEeeCCCcCccccch-hccccCcccEEecCC
Q 048758 348 VFSLRGYCNIFNLPNEIGNLKHLRCLNLSR-TRIQILP-ESINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHLKNSN 424 (777)
Q Consensus 348 ~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~-~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L~l~~ 424 (777)
.++++++..+..+|. +..+.+|++|+|++ |.++.+| ..+++|.+|++|+|++| .+..+|. .+++|++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 357776546888999 99999999999996 9999887 46899999999999999 6776665 579999999999999
Q ss_pred cccccccCcccccccCCcccCcEEe
Q 048758 425 VHSLEEMPKGFGKLTSLLTLGRFVV 449 (777)
Q Consensus 425 ~~~~~~~p~~~~~l~~L~~L~~~~~ 449 (777)
|. +..+|..+.....|+.|.+..+
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~l~~N 113 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELVLSGN 113 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEECCSS
T ss_pred Cc-cceeCHHHcccCCceEEEeeCC
Confidence 98 7888876443334777765443
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=1.1e-05 Score=85.54 Aligned_cols=59 Identities=14% Similarity=0.279 Sum_probs=35.4
Q ss_pred HHccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCC
Q 048758 339 LLNHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLED 400 (777)
Q Consensus 339 ~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~ 400 (777)
.|.++.+|+.+.+.. .++.++ .+|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..
T Consensus 66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 466777777777763 355553 44667777777777544 44443 2455566666655543
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.32 E-value=1.6e-05 Score=83.80 Aligned_cols=93 Identities=17% Similarity=0.158 Sum_probs=47.1
Q ss_pred ceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccchhccccCcccEEec
Q 048758 345 RLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKN 422 (777)
Q Consensus 345 ~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l 422 (777)
+|+.+.+..+ +..++ .+|.+ .+|+.+.+.. .++.++ ..+.++.+|+.+++..| .+..+|.......+|+.+.+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 4666666543 44443 23334 3466666654 344443 34556666666666665 55555554444556666655
Q ss_pred CCcccccccCcc-cccccCCccc
Q 048758 423 SNVHSLEEMPKG-FGKLTSLLTL 444 (777)
Q Consensus 423 ~~~~~~~~~p~~-~~~l~~L~~L 444 (777)
..+ +..++.. |.++.+|+.+
T Consensus 211 p~~--l~~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 211 PVT--LKEIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CTT--CCEECTTTTTTCTTCCCE
T ss_pred CCc--hheehhhHhhCCCCCCEE
Confidence 432 3333322 4444444444
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.30 E-value=4.1e-05 Score=80.72 Aligned_cols=237 Identities=10% Similarity=0.109 Sum_probs=132.9
Q ss_pred ccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcc
Q 048758 341 NHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKL 417 (777)
Q Consensus 341 ~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L 417 (777)
..+..++.+.+.. .+..++ .+|.++ +|+.+.+..+ ++.++. .+.+ .+|+.+.+.. .++.++. .+.++++|
T Consensus 110 ~~~~~l~~i~ip~--~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 110 EILKGYNEIILPN--SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp EECSSCSEEECCT--TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTC
T ss_pred EecCCccEEEECC--ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccC
Confidence 3446677777764 466655 445664 7999999876 777764 4555 4799999986 5666664 58889999
Q ss_pred cEEecCCcccccccCcccccccCCcccCcEEecCCCCCCccccccccccCCcEEEccccccCCcccchhhccCccccccc
Q 048758 418 RHLKNSNVHSLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRQLKSLAHLQGRLKISKLENVKDVGDASEAQLNNKVNLEA 497 (777)
Q Consensus 418 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~ 497 (777)
+.+++..+. +..++...-...+|+.+.+.. .........+..+++|+.
T Consensus 183 ~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~-------------------------------~l~~I~~~aF~~~~~L~~ 230 (401)
T 4fdw_A 183 KKADLSKTK-ITKLPASTFVYAGIEEVLLPV-------------------------------TLKEIGSQAFLKTSQLKT 230 (401)
T ss_dssp CEEECTTSC-CSEECTTTTTTCCCSEEECCT-------------------------------TCCEECTTTTTTCTTCCC
T ss_pred CeeecCCCc-ceEechhhEeecccCEEEeCC-------------------------------chheehhhHhhCCCCCCE
Confidence 999998877 777776533345665552210 011112223455566666
Q ss_pred ceEeeccCCCccchHHHhcccCCCCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCCCC----CCCC--CCCCCC
Q 048758 498 LILEWSARSERCEFETQVLSMLKPHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCGKC----TSLP--SVGQLP 571 (777)
Q Consensus 498 L~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~----~~l~--~~~~l~ 571 (777)
+.+..+-. . .....+.. .+|+.+.+. +....++..... .+++|+.+.+.++... ..++ .+..++
T Consensus 231 l~l~~~l~----~---I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~-~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 231 IEIPENVS----T---IGQEAFRE-SGITTVKLP-NGVTNIASRAFY-YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp EECCTTCC----E---ECTTTTTT-CCCSEEEEE-TTCCEECTTTTT-TCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred EecCCCcc----C---cccccccc-CCccEEEeC-CCccEEChhHhh-CCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 66542100 0 00112222 467777773 334444333221 4777888887765432 1233 566677
Q ss_pred CcceeeecCCCCceEeCcccccCCCCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecC
Q 048758 572 FLKELLISGMDGVKIVGLEFYGNICSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSC 640 (777)
Q Consensus 572 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c 640 (777)
+|+.+.+.+ .++.++...+. .+++|+.+.+.+. +..+ .......+ +|+.+.+.++
T Consensus 301 ~L~~l~l~~--~i~~I~~~aF~-----~c~~L~~l~lp~~--l~~I----~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 301 KLARFEIPE--SIRILGQGLLG-----GNRKVTQLTIPAN--VTQI----NFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCCEECCCT--TCCEECTTTTT-----TCCSCCEEEECTT--CCEE----CTTSSSSS-CCCEEEECCS
T ss_pred cCCeEEeCC--ceEEEhhhhhc-----CCCCccEEEECcc--ccEE----cHHhCCCC-CCCEEEEcCC
Confidence 777777763 35555443322 1566777766432 1111 11222334 6666666655
No 150
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.29 E-value=3.5e-06 Score=90.08 Aligned_cols=225 Identities=11% Similarity=-0.017 Sum_probs=127.8
Q ss_pred hHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCccc------hhchhhhccccCCC---C--CCcE
Q 048758 3 RISKSILNSVAKDQSNNDDDLNSLQVKLKERLS--GKKFLLVLDDLWNEN------YNSWCTLSCPFGAG---A--SGSK 69 (777)
Q Consensus 3 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~--~~~~LlvLDdv~~~~------~~~~~~~~~~~~~~---~--~gs~ 69 (777)
.+.++++..++........+.++..+.+.+.+. +++++|||||+|.-. ...+..+...+... + .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 466777777765432123345667777777775 679999999996621 12233222222211 2 3455
Q ss_pred EEEEeecHHHHhhcc---------cCCccccCCCChHhHHHHHHHhh---cCCCCCCCChhHHHHHHHHHHHcC------
Q 048758 70 IVVTHRNQDVAATMR---------AVSGKTLKELSDDDCLRVLIQHS---LGARYFNIPQSLKEVAEKIAKKCK------ 131 (777)
Q Consensus 70 iiiTTR~~~v~~~~~---------~~~~~~l~~L~~~ea~~Lf~~~~---~~~~~~~~~~~~~~~~~~i~~~c~------ 131 (777)
||+||+...+...+. ....+.+++++.++++++|...+ +... ... .+.+..+++.++
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGGTSC
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhccCC
Confidence 888998766432211 11238999999999999997653 3211 122 256788888899
Q ss_pred CchhHHHHHHhh-c-----CCC--CChhHHHHHHhccccccccCccCchhhHhhcccCCChhhHHHHhHhcCCC--CCce
Q 048758 132 GLPLAAKTLGGL-L-----SGK--DDLNDWEFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFAYCSLFP--KDYE 201 (777)
Q Consensus 132 glPlal~~~~~~-l-----~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~--~~~~ 201 (777)
|.|..+..+... . ... -+...+..++..... ...+.-.++.||...+.++..++.+. .+..
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 999655444322 1 111 122333333322110 23345577889999999999888754 2334
Q ss_pred eCHHHHHHHHH-----HCCCccCcCCCCcHHHHHHHHHHHHhhCccccccc
Q 048758 202 FEEEEIILLWT-----AEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSS 247 (777)
Q Consensus 202 i~~~~l~~~w~-----~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~~ 247 (777)
+....+...+. ..|. . ......+..+++.|.+.+++....
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYNV-K-----PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSCC-C-----CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcCC-C-----CCCHHHHHHHHHHHHhCCCEEeec
Confidence 44444433221 1121 1 111345667899999999997653
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=4e-07 Score=82.36 Aligned_cols=73 Identities=14% Similarity=0.212 Sum_probs=47.1
Q ss_pred CCCCCCCCeEEccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCch-hhcCCCCCccEEEecCCCCCcc
Q 048758 691 PQDIRSLNRLQISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRLP-QALLTLSSLTEMRIYGCTSLVS 765 (777)
Q Consensus 691 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~ 765 (777)
+..+++|++|++++|..++.-... .+......+++|++|+|++|++++.-- ..+..+++|++|++++|+.++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~--~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLE--RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHH--HHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccCHHHHH--HHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 356788888888888877643111 110000012478888888888887421 2355788888888888888764
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.22 E-value=6.4e-05 Score=79.54 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=28.9
Q ss_pred cccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccch-hccccCcccEE
Q 048758 363 EIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHL 420 (777)
Q Consensus 363 ~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~-~~~~L~~L~~L 420 (777)
+|.++.+|+.+.+..+ ++.++. .+.++.+|+.+++..+ ++.++. .+.++++|+.+
T Consensus 66 AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i 122 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSI 122 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCC
T ss_pred HhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhh
Confidence 4566666666666533 555533 3556666666666543 344432 24444444443
No 153
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.09 E-value=2.3e-05 Score=81.54 Aligned_cols=213 Identities=11% Similarity=0.109 Sum_probs=122.1
Q ss_pred CCHHHHHHHHHHHhCC-CeEEEEEeCCCccch-------hchhhhccccCCCCCCcEEEEEeecHHHHhhc---------
Q 048758 21 DDLNSLQVKLKERLSG-KKFLLVLDDLWNENY-------NSWCTLSCPFGAGASGSKIVVTHRNQDVAATM--------- 83 (777)
Q Consensus 21 ~~~~~~~~~l~~~L~~-~~~LlvLDdv~~~~~-------~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~--------- 83 (777)
.+.++..+.+.+..+. ++++|||||++.-.. ..+..+..... ..++.++|+|++........
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~ 189 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESP 189 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTST
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCc
Confidence 3456666677666643 499999999965321 11222222111 12478899999876542211
Q ss_pred -c--cCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHH-HHhc
Q 048758 84 -R--AVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEF-VLNT 159 (777)
Q Consensus 84 -~--~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~-~~~~ 159 (777)
. ....+.+.+|+.+|+.+++........ .... .+.+..+++.++|.|+++..++..+........+.. ..+.
T Consensus 190 l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~ 265 (350)
T 2qen_A 190 LYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV 265 (350)
T ss_dssp TTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccCccceeeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH
Confidence 0 123689999999999999976532111 1111 257889999999999999999876432112222211 1110
Q ss_pred cccccccCccCchhhHhhcccCC---ChhhHHHHhHhcCCCCCceeCHHHHHHHHHHCCCccCcCCCCcHHHHHHHHHHH
Q 048758 160 NIWDLREDKCDILPTLRVSYHFL---PPQLKRCFAYCSLFPKDYEFEEEEIILLWTAEGFLDQEYSGRKMEDLGREFVQE 236 (777)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~sy~~L---~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~~~g~i~~~~~~~~~~d~~~~~l~~ 236 (777)
+...+.-.+..+ ++..+..+..+|. .. .....+........- . .....+..+++.
T Consensus 266 -----------~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~--~~~~~l~~~~~~~~~--~-----~~~~~~~~~l~~ 323 (350)
T 2qen_A 266 -----------AKGLIMGELEELRRRSPRYVDILRAIAL--GY--NRWSLIRDYLAVKGT--K-----IPEPRLYALLEN 323 (350)
T ss_dssp -----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC--CSHHHHHHHHHHTTC--C-----CCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhCChhHHHHHHHHHh--CC--CCHHHHHHHHHHHhC--C-----CCHHHHHHHHHH
Confidence 001111111122 6778999999887 22 344444443322110 0 113456778999
Q ss_pred HhhCcccccccCCCCcEEe-cHHHHHHH
Q 048758 237 LHSRSLFQLSSKDTSRFVM-HDLINDLA 263 (777)
Q Consensus 237 L~~~sLl~~~~~~~~~~~m-hd~i~~~~ 263 (777)
|.+.+++.... +.|.+ |.+++.+.
T Consensus 324 L~~~gli~~~~---~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 324 LKKMNWIVEED---NTYKIADPVVATVL 348 (350)
T ss_dssp HHHTTSEEEET---TEEEESSHHHHHHH
T ss_pred HHhCCCEEecC---CEEEEecHHHHHHH
Confidence 99999997653 34554 77777664
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=2.6e-06 Score=77.01 Aligned_cols=87 Identities=13% Similarity=0.230 Sum_probs=49.6
Q ss_pred CCccEEEEecCCCcc----cccCCCCCccEEEEcCCCCcccCCCCCccEEEEeecCccccccccCCCCC----CCCCeEE
Q 048758 630 LLLETLDITSCDQLL----VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNVREQAYFWRSETRLPQDI----RSLNRLQ 701 (777)
Q Consensus 630 ~~L~~L~l~~c~~l~----~~~~~l~~L~~L~l~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~ 701 (777)
..|+.|++++|. +. ..+..+++|++|++++|..++ +.....+..+ ++|++|+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~It-------------------D~gL~~L~~~~~~~~~L~~L~ 120 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIE-------------------DGCLERLSQLENLQKSMLEME 120 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCC-------------------HHHHHHHHTCHHHHHHCCEEE
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccC-------------------HHHHHHHHhcccccCCCCEEE
Confidence 367888888886 32 234567777777777776554 2211111111 3577777
Q ss_pred ccCCCCCccccccccccCCCCCcCCcccEEeeecCCCCCCc
Q 048758 702 ISRCPQLLSLVTEEEHDQQQPELPCRLQFLELRNCEGLTRL 742 (777)
Q Consensus 702 l~~c~~l~~l~~~~~~~~~~~~l~~~L~~L~l~~c~~l~~l 742 (777)
|++|++++.-... .+ ..+ ++|++|++++|+.++..
T Consensus 121 Ls~C~~ITD~Gl~--~L---~~~-~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 121 IISCGNVTDKGII--AL---HHF-RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp EESCTTCCHHHHH--HG---GGC-TTCCEEEEESCTTCCCH
T ss_pred cCCCCcCCHHHHH--HH---hcC-CCCCEEECCCCCCCCch
Confidence 7777666542111 11 222 67777777777777753
No 155
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.04 E-value=3e-05 Score=80.86 Aligned_cols=212 Identities=13% Similarity=0.066 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHhCCCeEEEEEeCCCccch---hchhhhccccCCCCCCcEEEEEeecHHHHhhc----------c--cC
Q 048758 22 DLNSLQVKLKERLSGKKFLLVLDDLWNENY---NSWCTLSCPFGAGASGSKIVVTHRNQDVAATM----------R--AV 86 (777)
Q Consensus 22 ~~~~~~~~l~~~L~~~~~LlvLDdv~~~~~---~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~----------~--~~ 86 (777)
......+.+.+.-+ ++++|||||++.-.. .++......+.....+.++|+|+|........ . ..
T Consensus 123 ~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~ 201 (357)
T 2fna_A 123 SFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF 201 (357)
T ss_dssp CHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC
T ss_pred hHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCcc
Confidence 34555555554333 599999999955211 12222222222222467899999987643221 1 12
Q ss_pred CccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCCCChhHHHHH-Hhccccccc
Q 048758 87 SGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGKDDLNDWEFV-LNTNIWDLR 165 (777)
Q Consensus 87 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~~~~~~w~~~-~~~~~~~~~ 165 (777)
..+.+.+|+.+|+.+++....... .... .. ...|++.++|.|+++..++..+........|... .+...
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~-~~~~-~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 271 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEA-DIDF-KD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK---- 271 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHH-TCCC-CC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----
T ss_pred ceeecCCCCHHHHHHHHHHHHHHc-CCCC-Cc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----
Confidence 468999999999999998753211 1111 11 1789999999999999998876433223333211 11000
Q ss_pred cCccCchhhHh-hccc--CCChhhHHHHhHhcCCCCCceeCHHHHHHHHH-HCCCccCcCCCCcHHHHHHHHHHHHhhCc
Q 048758 166 EDKCDILPTLR-VSYH--FLPPQLKRCFAYCSLFPKDYEFEEEEIILLWT-AEGFLDQEYSGRKMEDLGREFVQELHSRS 241 (777)
Q Consensus 166 ~~~~~~~~~l~-~sy~--~L~~~~k~~fl~~~~f~~~~~i~~~~l~~~w~-~~g~i~~~~~~~~~~d~~~~~l~~L~~~s 241 (777)
..+...+. +.++ .+++..+..+..+|+ +. +...+..... ..|. ......+..+++.|.+.+
T Consensus 272 ---~~~~~~l~~~~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~g 336 (357)
T 2fna_A 272 ---KLILKEFENFLHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHS 336 (357)
T ss_dssp ---HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCC
Confidence 00111111 1111 578889999999998 22 4443333221 1121 011245667899999999
Q ss_pred ccccccCCCCcEE-ecHHHHHH
Q 048758 242 LFQLSSKDTSRFV-MHDLINDL 262 (777)
Q Consensus 242 Ll~~~~~~~~~~~-mhd~i~~~ 262 (777)
++.... +.|. .|++++++
T Consensus 337 li~~~~---~~y~f~~~~~~~~ 355 (357)
T 2fna_A 337 WIIKEG---EKYCPSEPLISLA 355 (357)
T ss_dssp SEEESS---SCEEESSHHHHHH
T ss_pred CEEecC---CEEEecCHHHHHh
Confidence 997653 3455 57788765
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.97 E-value=2e-06 Score=89.82 Aligned_cols=97 Identities=18% Similarity=0.156 Sum_probs=46.2
Q ss_pred CchhhHHHHHHHHccCCceeEEeecCccCcccc-----Cccc-cCcCccCeeeccCCcccc-----cchhhhccccCcEE
Q 048758 328 DNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNL-----PNEI-GNLKHLRCLNLSRTRIQI-----LPESINSLYNLHTI 396 (777)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-----p~~i-~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L 396 (777)
.+.+.......+...+++|++|+|++| .+... ...+ ...++|++|+|++|.++. ++..+..+++|++|
T Consensus 110 ~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L 188 (372)
T 3un9_A 110 SCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188 (372)
T ss_dssp TCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEE
T ss_pred CCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEE
Confidence 333433334444444455666666655 33321 1111 134456666666665542 33344555556666
Q ss_pred eeCCCcCccc-----cchhccccCcccEEecCCcc
Q 048758 397 LLEDCWKLKK-----LCKDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 397 ~l~~~~~l~~-----lp~~~~~L~~L~~L~l~~~~ 426 (777)
++++| .+.. ++..+...++|++|++++|.
T Consensus 189 ~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 189 SLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp ECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred eCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 66665 2321 23334455556666666655
No 157
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.92 E-value=4.7e-06 Score=87.07 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=89.8
Q ss_pred ccceEEEEEeCcCCCCcchhhhccCCCccEEeeCcccCCCCchhhHHHHH---HHH-ccCCceeEEeecCccCccc----
Q 048758 288 QSLRHFSYIRGQYDGDTRLEFICDVQHLRTFLPMKLSDFGDNYLAWSALQ---MLL-NHLPRLRVFSLRGYCNIFN---- 359 (777)
Q Consensus 288 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---~~~-~~l~~L~~L~L~~~~~l~~---- 359 (777)
..++.+.+..+.............+++++.| +++.|.+...... ..+ ...+.|++|+|++| .+..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L------~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~ 173 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKL------GLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVA 173 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEE------ECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHh------hcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHH
Confidence 4566666655544332222223345567777 4455555443333 333 35788999999999 5644
Q ss_pred -cCccccCcCccCeeeccCCcccc-----cchhhhccccCcEEeeCCCcCccc-----cchhccccCcccEEecCCcc
Q 048758 360 -LPNEIGNLKHLRCLNLSRTRIQI-----LPESINSLYNLHTILLEDCWKLKK-----LCKDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 360 -lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~~~L~~L~~L~l~~~~ 426 (777)
++..+..+++|++|+|++|.++. ++..+...++|++|++++| .+.. ++..+...++|++|++++|.
T Consensus 174 ~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 174 VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 55566788999999999999873 3566778889999999999 5543 44456677999999999998
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=1.5e-05 Score=82.37 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=42.3
Q ss_pred CCCCCCcceeeecCCCCceEeCccccc--CC--CCCCCCCCceeeccCccchhhhhccccCCCCCCCCCccEEEEecCCC
Q 048758 567 VGQLPFLKELLISGMDGVKIVGLEFYG--NI--CSVPFPSLEALSFSDMTEWEEWIPCGAGTLPRRLLLLETLDITSCDQ 642 (777)
Q Consensus 567 ~~~l~~L~~L~L~~~~~l~~~~~~~~~--~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 642 (777)
...+++|+.|.+.+... ......... .. ....+|+|++|.+.++..+. ... -..++|++|++..|..
T Consensus 135 ~~~l~~L~~L~l~~~~~-e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~------l~~--~~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDF-EEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS------IGK--KPRPNLKSLEIISGGL 205 (362)
T ss_dssp HHHHTTCSEEEECCCCT-TTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB------CCS--CBCTTCSEEEEECSBC
T ss_pred hhhcchhhheeecCcch-hhcccccccccCHHHHHhcCCCCcEEEEeCCCCce------ecc--ccCCCCcEEEEecCCC
Confidence 44678899998865321 000000000 00 01236788888887653211 011 1256777777776642
Q ss_pred ccc---cc--CCCCCccEEEEcC
Q 048758 643 LLV---TI--QCLPALSELQIDG 660 (777)
Q Consensus 643 l~~---~~--~~l~~L~~L~l~~ 660 (777)
-.. .+ ..+|+|++|+|+.
T Consensus 206 ~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 206 PDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp CHHHHHHHHHSBCTTCCEEEEEC
T ss_pred ChHHHHHHHHccCCCCcEEEEec
Confidence 111 11 2567777777753
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=1.9e-05 Score=73.49 Aligned_cols=90 Identities=19% Similarity=0.193 Sum_probs=42.8
Q ss_pred HHHHHccCCceeEEeecCccCccc-----cCccccCcCccCeeeccCCcccc-----cchhhhccccCcEEeeCCCcCcc
Q 048758 336 LQMLLNHLPRLRVFSLRGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQI-----LPESINSLYNLHTILLEDCWKLK 405 (777)
Q Consensus 336 ~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~ 405 (777)
+...+...+.|++|+|++|..+.. +...+...++|++|+|++|.+.. +...+...++|++|++++| .+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCC
Confidence 344455555555555555412221 23334444555555555555541 2333444455555555555 332
Q ss_pred c-----cchhccccCcccEEec--CCcc
Q 048758 406 K-----LCKDMGNLTKLRHLKN--SNVH 426 (777)
Q Consensus 406 ~-----lp~~~~~L~~L~~L~l--~~~~ 426 (777)
. +...+...++|++|++ ++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 2 2333444555555555 4444
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.68 E-value=6.3e-06 Score=85.31 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=17.9
Q ss_pred CCCCCCeEEEeecCCCCCCcccCCCCCCCeeEEEEeCCC
Q 048758 521 PHRDVQELTITGYSGTKFPIWLGDSSFSKLVQLKLEGCG 559 (777)
Q Consensus 521 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~ 559 (777)
.+|+|++|.+.++....++. + ..++|++|+|..|.
T Consensus 170 ~~P~L~~L~L~g~~~l~l~~-~---~~~~L~~L~L~~~~ 204 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLSIGK-K---PRPNLKSLEIISGG 204 (362)
T ss_dssp TCTTCCEEEEECCBTCBCCS-C---BCTTCSEEEEECSB
T ss_pred cCCCCcEEEEeCCCCceecc-c---cCCCCcEEEEecCC
Confidence 44566666666553233332 1 24566666665543
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=6.2e-05 Score=73.61 Aligned_cols=83 Identities=17% Similarity=0.298 Sum_probs=50.4
Q ss_pred HHHHccCCceeEEeecCccCcccc---CccccCcCccCeeeccCCcccccchhhhccc--cCcEEeeCCCcCccccc---
Q 048758 337 QMLLNHLPRLRVFSLRGYCNIFNL---PNEIGNLKHLRCLNLSRTRIQILPESINSLY--NLHTILLEDCWKLKKLC--- 408 (777)
Q Consensus 337 ~~~~~~l~~L~~L~L~~~~~l~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp--- 408 (777)
.....++++|+.|+|++| .+..+ |..++.+++|++|+|++|.+..+ ..+..+. +|++|++++|.....+|
T Consensus 163 ~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred HHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcch
Confidence 333456778888888877 55543 34556777777777777777765 3344444 77777777773323232
Q ss_pred ----hhccccCcccEEe
Q 048758 409 ----KDMGNLTKLRHLK 421 (777)
Q Consensus 409 ----~~~~~L~~L~~L~ 421 (777)
..+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 1244566666654
No 162
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.59 E-value=7.9e-05 Score=69.18 Aligned_cols=112 Identities=16% Similarity=0.130 Sum_probs=82.8
Q ss_pred hhhccCCCccEEeeCcccCCCCc-hhh---HHHHHHHHccCCceeEEeecCccCccc-----cCccccCcCccCeeeccC
Q 048758 307 EFICDVQHLRTFLPMKLSDFGDN-YLA---WSALQMLLNHLPRLRVFSLRGYCNIFN-----LPNEIGNLKHLRCLNLSR 377 (777)
Q Consensus 307 ~~~~~~~~l~~l~~~~~~~~~~~-~~~---~~~~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~ 377 (777)
..+...+.++.|.+ +.+ .+. ...+...+...++|++|+|++| .+.. +...+...++|++|+|++
T Consensus 30 ~~l~~~~~L~~L~L------~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 30 RIQNNDPDLEEVNL------NNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHTTCTTCCEEEC------TTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHhcCCCCCEEEe------cCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcC
Confidence 34567888888844 334 333 3345566778899999999999 5543 445566678999999999
Q ss_pred Ccccc-----cchhhhccccCcEEee--CCCcCccc-----cchhccccCcccEEecCCcc
Q 048758 378 TRIQI-----LPESINSLYNLHTILL--EDCWKLKK-----LCKDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 378 ~~i~~-----lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~~~~L~~L~~L~l~~~~ 426 (777)
|.|.. +...+...++|++|++ ++| .+.. +...+...++|++|++++|.
T Consensus 103 N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 103 NFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 99883 5667788889999999 777 4432 44456667899999999987
No 163
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.46 E-value=0.0064 Score=63.76 Aligned_cols=217 Identities=12% Similarity=0.019 Sum_probs=125.7
Q ss_pred hHHHHHHHhhcCCCC-CCCCCHHHHHHHHHHHhCCCeEEEEEeCCCccchh----c-hhhhccccCCCCCCcEEEEEeec
Q 048758 3 RISKSILNSVAKDQS-NNDDDLNSLQVKLKERLSGKKFLLVLDDLWNENYN----S-WCTLSCPFGAGASGSKIVVTHRN 76 (777)
Q Consensus 3 ~l~~~il~~l~~~~~-~~~~~~~~~~~~l~~~L~~~~~LlvLDdv~~~~~~----~-~~~~~~~~~~~~~gs~iiiTTR~ 76 (777)
.+..+++..+.+... ....+..+..+.+.+.++.++.+|||||++.-... . +..+... . .+.+||+||+.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEECC
Confidence 345566666633221 12234567788888888877779999999553211 1 2222222 2 67889999987
Q ss_pred HHH--------HhhcccCCccccCCCChHhHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHHcC---Cchh-HHHHHHhh
Q 048758 77 QDV--------AATMRAVSGKTLKELSDDDCLRVLIQHSLG-ARYFNIPQSLKEVAEKIAKKCK---GLPL-AAKTLGGL 143 (777)
Q Consensus 77 ~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---glPl-al~~~~~~ 143 (777)
... ...+ ...+.+++++.++..++|...+.. .......+ +....+++.++ |.|- |+..+..+
T Consensus 174 ~~~~~~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 174 INVRDYMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp TTTTTTSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 632 1221 237999999999999999987531 11112222 44566666666 8775 44333332
Q ss_pred c--C---CCCChhHHHHHHhccccccccCccCchhhHhhcccCCChhhHHHHhHhcCCCCC-ceeCHHHHHHHHHHCCCc
Q 048758 144 L--S---GKDDLNDWEFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFAYCSLFPKD-YEFEEEEIILLWTAEGFL 217 (777)
Q Consensus 144 l--~---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~-~~i~~~~l~~~w~~~g~i 217 (777)
. . ..-+.+.+..++.... ...+..+++.|+...+..+..++. ... .++. +.........| .
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~ 315 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-Q 315 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-C
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-C
Confidence 2 2 1234566666655331 134566778899888888887776 211 1111 11222222333 1
Q ss_pred cCcCCCCcHHHHHHHHHHHHhhCcccccc
Q 048758 218 DQEYSGRKMEDLGREFVQELHSRSLFQLS 246 (777)
Q Consensus 218 ~~~~~~~~~~d~~~~~l~~L~~~sLl~~~ 246 (777)
.+ .......++++.|.+.++++..
T Consensus 316 ~~-----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 KP-----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 11 1235677889999999999864
No 164
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.36 E-value=0.0049 Score=64.68 Aligned_cols=224 Identities=13% Similarity=0.003 Sum_probs=124.8
Q ss_pred hHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCccch-----hchhhhccccCCC--CCCcEEEEE
Q 048758 3 RISKSILNSVAKDQSNNDDDLNSLQVKLKERLS--GKKFLLVLDDLWNENY-----NSWCTLSCPFGAG--ASGSKIVVT 73 (777)
Q Consensus 3 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~--~~~~LlvLDdv~~~~~-----~~~~~~~~~~~~~--~~gs~iiiT 73 (777)
.+..+++..+.........+..+..+.+.+.++ +++.+|||||++.-.. ..+..+....... ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 345666777754433233446676777887774 4588999999965321 1122222222111 446678888
Q ss_pred eecHHH--------HhhcccCCccccCCCChHhHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHHcC---Cch-hHHHHH
Q 048758 74 HRNQDV--------AATMRAVSGKTLKELSDDDCLRVLIQHSLG-ARYFNIPQSLKEVAEKIAKKCK---GLP-LAAKTL 140 (777)
Q Consensus 74 TR~~~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---glP-lal~~~ 140 (777)
|+.... ...+. ...+.+++++.++..+++...+.. .......+ +....+++.++ |.| .++..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHH
Confidence 877632 22221 246899999999999999887521 01111222 34566777776 998 333333
Q ss_pred HhhcC-----C--CCChhHHHHHHhccccccccCccCchhhHhhcccCCChhhHHHHhHhc-CCCCCceeCHHHHHH---
Q 048758 141 GGLLS-----G--KDDLNDWEFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFAYCS-LFPKDYEFEEEEIIL--- 209 (777)
Q Consensus 141 ~~~l~-----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~-~f~~~~~i~~~~l~~--- 209 (777)
..+.. + .-+.+.+..++.... ...+.-++..|+...+..++.++ ++.+...+....+.+
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 32221 1 123455555554321 12345567889988888877776 343222344443333
Q ss_pred -HHHHCCCccCcCCCCcHHHHHHHHHHHHhhCcccccc
Q 048758 210 -LWTAEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLS 246 (777)
Q Consensus 210 -~w~~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~ 246 (777)
.....| ..+ .....+..+++.|...++++..
T Consensus 320 ~~~~~~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 222333 221 2245677889999999999874
No 165
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.33 E-value=0.00017 Score=70.43 Aligned_cols=80 Identities=24% Similarity=0.282 Sum_probs=61.5
Q ss_pred cCcCccCeeeccCCccccc---chhhhccccCcEEeeCCCcCccccchhccccC--cccEEecCCcccccccCc------
Q 048758 365 GNLKHLRCLNLSRTRIQIL---PESINSLYNLHTILLEDCWKLKKLCKDMGNLT--KLRHLKNSNVHSLEEMPK------ 433 (777)
Q Consensus 365 ~~l~~L~~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~--~L~~L~l~~~~~~~~~p~------ 433 (777)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++| .+..+ ..+..+. +|++|++.+|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5788999999999998865 466789999999999999 67666 3355555 999999999994444542
Q ss_pred -ccccccCCcccCc
Q 048758 434 -GFGKLTSLLTLGR 446 (777)
Q Consensus 434 -~~~~l~~L~~L~~ 446 (777)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2566777777754
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.24 E-value=0.004 Score=65.54 Aligned_cols=83 Identities=7% Similarity=0.120 Sum_probs=48.2
Q ss_pred HHccCCceeEEeecCc--cCccccC-ccccCcCccCeeeccCCcccccc-hhhhccccCcEEeeCCCcCccccch-hccc
Q 048758 339 LLNHLPRLRVFSLRGY--CNIFNLP-NEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCK-DMGN 413 (777)
Q Consensus 339 ~~~~l~~L~~L~L~~~--~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~~~~ 413 (777)
.|.++.+|+.+.+..+ ..+..++ .+|.++.+|+.+.+..+ ++.++ ..+..+.+|+.+.+..+ +..++. .+..
T Consensus 82 AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~ 158 (394)
T 4gt6_A 82 AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSY 158 (394)
T ss_dssp TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT
T ss_pred HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce--eeeecccceec
Confidence 4677777777777654 1244443 34566777777666544 44443 34566777777777543 333432 3556
Q ss_pred cCcccEEecCC
Q 048758 414 LTKLRHLKNSN 424 (777)
Q Consensus 414 L~~L~~L~l~~ 424 (777)
..+|+.+.+..
T Consensus 159 c~~L~~i~~~~ 169 (394)
T 4gt6_A 159 CYSLHTVTLPD 169 (394)
T ss_dssp CTTCCEEECCT
T ss_pred ccccccccccc
Confidence 66777666654
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.24 E-value=0.02 Score=59.80 Aligned_cols=77 Identities=10% Similarity=0.152 Sum_probs=38.2
Q ss_pred cCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccch-hhhccccCcEEeeCCCcCccccchhccccCcccE
Q 048758 342 HLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 419 (777)
Q Consensus 342 ~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~ 419 (777)
...+|+.+.+.. .++.++ .+|.++.+|+.+.+..+ ++.++. .+.++ +|+.+.+.. .++.++.......+|+.
T Consensus 44 ~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~~~L~~ 117 (379)
T 4h09_A 44 DRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQGTDLDD 117 (379)
T ss_dssp GGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTTCCCSE
T ss_pred cccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc--eeeEeccceeccCCccc
Confidence 334455555543 345543 34566666666666543 444443 34443 455555543 24444444333345666
Q ss_pred EecCC
Q 048758 420 LKNSN 424 (777)
Q Consensus 420 L~l~~ 424 (777)
+.+..
T Consensus 118 i~lp~ 122 (379)
T 4h09_A 118 FEFPG 122 (379)
T ss_dssp EECCT
T ss_pred ccCCC
Confidence 66543
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.15 E-value=0.0087 Score=62.95 Aligned_cols=100 Identities=12% Similarity=0.170 Sum_probs=67.9
Q ss_pred HHccCC-ceeEEeecCccCccccC-ccccCcCccCeeeccCCc---ccccc-hhhhccccCcEEeeCCCcCccccch-hc
Q 048758 339 LLNHLP-RLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTR---IQILP-ESINSLYNLHTILLEDCWKLKKLCK-DM 411 (777)
Q Consensus 339 ~~~~l~-~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~---i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~-~~ 411 (777)
.|.+++ .|+.+.+.. .++.+. .+|.++.+|+.+.+..+. ++.++ ..+..+.+|+.+.+..+ +..++. .+
T Consensus 58 aF~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTT
T ss_pred hccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhh
Confidence 356664 588888874 366654 568899999999998753 66665 35777888888877653 555554 36
Q ss_pred cccCcccEEecCCcccccccCc-ccccccCCccc
Q 048758 412 GNLTKLRHLKNSNVHSLEEMPK-GFGKLTSLLTL 444 (777)
Q Consensus 412 ~~L~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L 444 (777)
..+.+|+.+.+... ...++. .+..+.+|+.+
T Consensus 134 ~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i 165 (394)
T 4gt6_A 134 HHCEELDTVTIPEG--VTSVADGMFSYCYSLHTV 165 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEE
T ss_pred hhhcccccccccce--eeeecccceecccccccc
Confidence 78889999988643 334433 35566666655
No 169
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.80 E-value=0.0016 Score=63.40 Aligned_cols=104 Identities=13% Similarity=0.098 Sum_probs=71.9
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHHh-hc-ccCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVAA-TM-RAVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++.+||+||++.-....++.+...+.....+.++|+||+...... .. .....+.+++++.+|..+++...+.....
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~- 203 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI- 203 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 4679999999966444556666655555556788999987654211 11 11246899999999999999887643221
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHHHhh
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAKTLGGL 143 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~~~~~~ 143 (777)
... .+....+++.|+|.|..+..+...
T Consensus 204 ~~~---~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 204 AHE---PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 112 256788999999999988776643
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.73 E-value=0.031 Score=58.50 Aligned_cols=226 Identities=13% Similarity=0.054 Sum_probs=125.3
Q ss_pred hHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCccchhchhhhccccCCCC----CCcEEEEEeec
Q 048758 3 RISKSILNSVAKDQSNNDDDLNSLQVKLKERLS--GKKFLLVLDDLWNENYNSWCTLSCPFGAGA----SGSKIVVTHRN 76 (777)
Q Consensus 3 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~--~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~----~gs~iiiTTR~ 76 (777)
.+.++++..+.........+..+..+.+.+.+. +++.+|||||++.-.......+...+.... .+..||+||++
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 345556666644332122345666666666664 568899999996644344445444433211 36788888887
Q ss_pred HHHHhhcc-------cCCccccCCCChHhHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHHc---------CCchhHHH-
Q 048758 77 QDVAATMR-------AVSGKTLKELSDDDCLRVLIQHSLG-ARYFNIPQSLKEVAEKIAKKC---------KGLPLAAK- 138 (777)
Q Consensus 77 ~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c---------~glPlal~- 138 (777)
........ ....+.+++++.++..+++...+.. ....... .+....+++.+ +|.|-.+.
T Consensus 169 ~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 169 DAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp THHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred chHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 75443322 1236899999999999999887532 0111122 25677788888 78764433
Q ss_pred HHHhhcC-----CC--CChhHHHHHHhccccccccCccCchhhHhhcccCCChhhHHHHhHhcCCC---CCceeCHHHHH
Q 048758 139 TLGGLLS-----GK--DDLNDWEFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFAYCSLFP---KDYEFEEEEII 208 (777)
Q Consensus 139 ~~~~~l~-----~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~---~~~~i~~~~l~ 208 (777)
.+..+.. +. -+.+....+..... ...+.-.+..|+...+.++..++.+. .+..+....+.
T Consensus 246 ~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 315 (389)
T 1fnn_A 246 ILYRSAYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAE 315 (389)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHH
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHH
Confidence 3222211 11 12222222222211 11123345667888888877777654 22144444444
Q ss_pred HHHHH----CCCccCcCCCCcHHHHHHHHHHHHhhCccccccc
Q 048758 209 LLWTA----EGFLDQEYSGRKMEDLGREFVQELHSRSLFQLSS 247 (777)
Q Consensus 209 ~~w~~----~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~~ 247 (777)
..+.. .|. .+ ..+.....+++.|.+++++....
T Consensus 316 ~~~~~~~~~~~~-~~-----~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 316 ESYKIVCEEYGE-RP-----RVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHHHTTC-CC-----CCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHcCC-CC-----CCHHHHHHHHHHHHhCCCeEEee
Confidence 43322 232 11 11356778899999999998754
No 171
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.72 E-value=0.023 Score=59.35 Aligned_cols=223 Identities=12% Similarity=0.035 Sum_probs=117.9
Q ss_pred HHHHHHhhcCCCCCCCCCHHHHHHHHHHHhC--CCeEEEEEeCCCccc----hhchhhhccccCC-CCCCcEEEEEeecH
Q 048758 5 SKSILNSVAKDQSNNDDDLNSLQVKLKERLS--GKKFLLVLDDLWNEN----YNSWCTLSCPFGA-GASGSKIVVTHRNQ 77 (777)
Q Consensus 5 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~L~--~~~~LlvLDdv~~~~----~~~~~~~~~~~~~-~~~gs~iiiTTR~~ 77 (777)
..+++..+.........+..+..+.+.+.+. +++.+||||+++.-. ...+..+...+.. ...+..+|+||++.
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 4444444433222122345666677777764 448999999995521 1223333322211 23456778888876
Q ss_pred HHHhhcc-------cCCccccCCCChHhHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHHcC---Cchh-HHHHHHhhcC
Q 048758 78 DVAATMR-------AVSGKTLKELSDDDCLRVLIQHSLG-ARYFNIPQSLKEVAEKIAKKCK---GLPL-AAKTLGGLLS 145 (777)
Q Consensus 78 ~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---glPl-al~~~~~~l~ 145 (777)
.....+. ....+.+++++.++..+++...+.. .......+ +....+++.++ |.|. ++..+..+..
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPD---NVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCH---HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5332221 1147899999999999999886421 11112233 45556666666 8887 3333332211
Q ss_pred -----C--CCChhHHHHHHhccccccccCccCchhhHhhcccCCChhhHHHHhHhcCCCC-C-ceeCHHHHHHH----HH
Q 048758 146 -----G--KDDLNDWEFVLNTNIWDLREDKCDILPTLRVSYHFLPPQLKRCFAYCSLFPK-D-YEFEEEEIILL----WT 212 (777)
Q Consensus 146 -----~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~-~-~~i~~~~l~~~----w~ 212 (777)
+ .-+.+.++.++.... ...+.-.+..++...+..+..++.+.+ + ..+....+.+. -.
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 123444444443321 234556678888888888887774322 2 12333322221 11
Q ss_pred HCCCccCcCCCCcHHHHHHHHHHHHhhCcccccc
Q 048758 213 AEGFLDQEYSGRKMEDLGREFVQELHSRSLFQLS 246 (777)
Q Consensus 213 ~~g~i~~~~~~~~~~d~~~~~l~~L~~~sLl~~~ 246 (777)
..| +.+ ........+++.|.+.++++..
T Consensus 321 ~~g-~~~-----~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 321 KLG-VEA-----VTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HHT-CCC-----CCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcC-CCC-----CCHHHHHHHHHHHHhCCCEEEE
Confidence 222 111 1134567789999999999763
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.11 E-value=0.008 Score=61.27 Aligned_cols=190 Identities=12% Similarity=0.025 Sum_probs=98.5
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCC------------------CCCcEEEEEeecHHHH-hhcc--cCCccccCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAG------------------ASGSKIVVTHRNQDVA-ATMR--AVSGKTLKELS 95 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~------------------~~gs~iiiTTR~~~v~-~~~~--~~~~~~l~~L~ 95 (777)
+..+|+|||+..-.......+...+... .++.++|.||...... ..+. ....+.+.+++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~ 169 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT 169 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence 5679999999654322222222211111 0235677666543211 1111 12468999999
Q ss_pred hHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHHhhcCCC--------CChhHHHHHHhccccccccC
Q 048758 96 DDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLGGLLSGK--------DDLNDWEFVLNTNIWDLRED 167 (777)
Q Consensus 96 ~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~~~l~~~--------~~~~~w~~~~~~~~~~~~~~ 167 (777)
.+|..+++...+..... ... .+....++++++|.|-.+..+...+... -+.+....++.
T Consensus 170 ~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~--------- 236 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA--------- 236 (324)
T ss_dssp HHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---------
Confidence 99999998887643221 122 2567888999999998776665443221 11222222222
Q ss_pred ccCchhhHhhcccCCChhhHHHHhHhcCCCCCce-----------eCHHHH----HHHHHHCCCccCcCCCCcHHHHHHH
Q 048758 168 KCDILPTLRVSYHFLPPQLKRCFAYCSLFPKDYE-----------FEEEEI----ILLWTAEGFLDQEYSGRKMEDLGRE 232 (777)
Q Consensus 168 ~~~~~~~l~~sy~~L~~~~k~~fl~~~~f~~~~~-----------i~~~~l----~~~w~~~g~i~~~~~~~~~~d~~~~ 232 (777)
.+...+..++..++..+..+.-...+.. +++..+ -++.+..|++.....+....+.+..
T Consensus 237 ------~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~~~~~~~~~ 310 (324)
T 1hqc_A 237 ------ALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGRVPTELAYR 310 (324)
T ss_dssp ------HHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred ------HhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccceecHHHHH
Confidence 1223345566666666655443222221 222222 2235567777655555566677777
Q ss_pred HHH-HHhhCccccc
Q 048758 233 FVQ-ELHSRSLFQL 245 (777)
Q Consensus 233 ~l~-~L~~~sLl~~ 245 (777)
++. ++.+++|||+
T Consensus 311 ~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 311 HLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTCCCCC------
T ss_pred HHhcCCCCCCCCCC
Confidence 776 6777777753
No 173
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.93 E-value=0.024 Score=53.80 Aligned_cols=117 Identities=10% Similarity=0.052 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHhC------CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHH-hhc-ccCCccccC
Q 048758 21 DDLNSLQVKLKERLS------GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA-ATM-RAVSGKTLK 92 (777)
Q Consensus 21 ~~~~~~~~~l~~~L~------~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~-~~~-~~~~~~~l~ 92 (777)
.+.+.....+..... .++.+||+||++.-.....+.+...+.....+.++|+||+..... ... ..-..+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~ 159 (226)
T 2chg_A 80 RGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFK 159 (226)
T ss_dssp TCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecC
Confidence 344555555555543 578999999996654444555555555555678899998765421 111 111368999
Q ss_pred CCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 93 ELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 93 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
+++.++..+++...+..... ... .+....+++.++|.|..+..+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999887632111 112 2567778889999998654443
No 174
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.77 E-value=0.17 Score=52.67 Aligned_cols=104 Identities=5% Similarity=0.011 Sum_probs=58.7
Q ss_pred hhhhccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccccC-ccccCcCccCeeeccCCcccccc
Q 048758 306 LEFICDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILP 384 (777)
Q Consensus 306 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp 384 (777)
.+++....++++..+.+.. ..+....|.++.+|+.+.|.. .+..++ .+|.++ +|+.+.+..+ ++.++
T Consensus 39 ~~~~~~~~~i~~v~ip~~v--------t~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~ 106 (379)
T 4h09_A 39 IPWYKDRDRISEVRVNSGI--------TSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGMER-VKKFG 106 (379)
T ss_dssp STTGGGGGGCSEEEECTTE--------EEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECTT-CCEEC
T ss_pred ccccccccCCEEEEeCCCc--------cChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCce-eeEec
Confidence 3445556667666543211 112234588899999999974 366655 445555 6777766543 55565
Q ss_pred hhhhccccCcEEeeCCCcCccccchhccccCcccEEecC
Q 048758 385 ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLKNS 423 (777)
Q Consensus 385 ~~i~~L~~L~~L~l~~~~~l~~lp~~~~~L~~L~~L~l~ 423 (777)
.......+|+.+.+..+ +..+......-.+|+.+.+.
T Consensus 107 ~~aF~~~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~ 143 (379)
T 4h09_A 107 DYVFQGTDLDDFEFPGA--TTEIGNYIFYNSSVKRIVIP 143 (379)
T ss_dssp TTTTTTCCCSEEECCTT--CCEECTTTTTTCCCCEEEEC
T ss_pred cceeccCCcccccCCCc--cccccccccccceeeeeecc
Confidence 44333457888888764 44444433333345555443
No 175
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.05 E-value=0.061 Score=54.55 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHh-------CCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHHH-hhc-ccCCccccC
Q 048758 22 DLNSLQVKLKERL-------SGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDVA-ATM-RAVSGKTLK 92 (777)
Q Consensus 22 ~~~~~~~~l~~~L-------~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v~-~~~-~~~~~~~l~ 92 (777)
+.+...+.+.+.. .+++.++|+||++.-.....+.+...+.....++++|+||+...-. ... .....+.+.
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~ 164 (323)
T 1sxj_B 85 GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYS 164 (323)
T ss_dssp SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeec
Confidence 4455555454443 4458899999997644444555555554445678888888764321 111 112378999
Q ss_pred CCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchh-HHHHHHh
Q 048758 93 ELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPL-AAKTLGG 142 (777)
Q Consensus 93 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl-al~~~~~ 142 (777)
+++.++..+++...+..... ... .+.+..+++.++|.|. |+..+..
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDV-KYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999887632111 112 2567889999999994 4444433
No 176
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.94 E-value=0.077 Score=45.33 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=30.6
Q ss_pred EEeecCccCcc--ccCccccCcCccCeeeccCCcccccchh-hhccccCcEEeeCCC
Q 048758 348 VFSLRGYCNIF--NLPNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDC 401 (777)
Q Consensus 348 ~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~ 401 (777)
+++.+++ .++ .+|..+ -.+|++|+|++|.|+.+|.. +..+++|++|+|++|
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCC-CCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4555555 555 666443 23566777777777766544 455666666666665
No 177
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.75 E-value=0.071 Score=45.53 Aligned_cols=53 Identities=17% Similarity=0.237 Sum_probs=44.5
Q ss_pred CeeeccCCccc--ccchhhhccccCcEEeeCCCcCccccchh-ccccCcccEEecCCcc
Q 048758 371 RCLNLSRTRIQ--ILPESINSLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLKNSNVH 426 (777)
Q Consensus 371 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 426 (777)
..++.++..++ .+|..+. .+|++|+|++| .++.+|.+ +..+++|+.|++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 47888888888 8887653 57999999999 88888865 6789999999999987
No 178
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.06 E-value=0.14 Score=47.07 Aligned_cols=91 Identities=21% Similarity=0.203 Sum_probs=61.1
Q ss_pred HHHHHHHccCCceeEEeecCccCccc-----cCccccCcCccCeeeccCCccc-----ccchhhhccccCcEEeeCCCcC
Q 048758 334 SALQMLLNHLPRLRVFSLRGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLEDCWK 403 (777)
Q Consensus 334 ~~~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~ 403 (777)
..+...+.+-+.|+.|+|+++..+.. +-+.+..-+.|+.|+|++|.|. .+...+..=+.|++|+|++| .
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~ 109 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-F 109 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-B
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-c
Confidence 34556667778899999987534432 3445566678999999999877 33445556678899999888 4
Q ss_pred cc-----ccchhccccCcccEEecCCc
Q 048758 404 LK-----KLCKDMGNLTKLRHLKNSNV 425 (777)
Q Consensus 404 l~-----~lp~~~~~L~~L~~L~l~~~ 425 (777)
+. .+...+..=+.|++|+++++
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 43 23333445566888888754
No 179
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.72 E-value=0.43 Score=48.16 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=66.6
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-----HHhhcccCCccccCCCChHhHHHHHHHhhcCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-----VAATMRAVSGKTLKELSDDDCLRVLIQHSLGA 110 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~ 110 (777)
+++.++|+||++.-.....+.+...+.....++++|+||.... +...+ ..+.+.+++.++..+++...+...
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~---~~~~~~~l~~~~~~~~l~~~~~~~ 185 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC---AIFRFRPLRDEDIAKRLRYIAENE 185 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE---EEEECCCCCHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC---cEEEecCCCHHHHHHHHHHHHHhc
Confidence 5688999999976544455555555545556788998887653 22222 368999999999999998876432
Q ss_pred CCCCCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 111 RYFNIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 111 ~~~~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
.. ..+ .+....+++.++|.|-.+..+.
T Consensus 186 ~~-~~~---~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 186 GL-ELT---EEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp TC-EEC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CC-CCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 21 112 2567788889999997654443
No 180
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.90 E-value=0.59 Score=42.80 Aligned_cols=114 Identities=16% Similarity=0.071 Sum_probs=72.2
Q ss_pred ccCCCccEEeeCcccCCCCchhhHHHHHHHHccCCceeEEeecCccCccc-----cCccccCcCccCeeeccCCccc---
Q 048758 310 CDVQHLRTFLPMKLSDFGDNYLAWSALQMLLNHLPRLRVFSLRGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ--- 381 (777)
Q Consensus 310 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~--- 381 (777)
.+-+.|+.|.+.....+. .-....+-..+..-..|+.|+|++| .+.. +-+.+..-+.|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~ig--d~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVS--KERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSC--HHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCC--HHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 455667777432211111 1122345556777789999999998 5654 3344556678999999999987
Q ss_pred --ccchhhhccccCcEEeeCCCcC--cc-----ccchhccccCcccEEecCCcc
Q 048758 382 --ILPESINSLYNLHTILLEDCWK--LK-----KLCKDMGNLTKLRHLKNSNVH 426 (777)
Q Consensus 382 --~lp~~i~~L~~L~~L~l~~~~~--l~-----~lp~~~~~L~~L~~L~l~~~~ 426 (777)
.+-..+..=+.|++|+++++.. +. .+...+..=+.|+.|+++.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3334555567799999987632 22 233344555788888887665
No 181
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.61 E-value=2.3 Score=42.41 Aligned_cols=100 Identities=9% Similarity=0.034 Sum_probs=65.3
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHH-Hhhc-ccCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV-AATM-RAVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++.++|+||+..-.....+.+...+.....+.++|+||....- .... ..-..+.+.+++.++..+.+...+.....
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~- 179 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV- 179 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence 56889999999664444455666666555567888888866541 1111 11236899999999999998877643221
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAKT 139 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~~ 139 (777)
... .+....+++.++|.+-.+..
T Consensus 180 ~i~---~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 180 KIT---EDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp CBC---HHHHHHHHHTTTTCHHHHHH
T ss_pred CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 122 25667788889998865443
No 182
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=86.85 E-value=1.2 Score=45.89 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=64.9
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHHH-Hhhc-ccCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQDV-AATM-RAVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~v-~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++.++|+||+..-.....+.+...+.....+..+|++|....- .... .....+++.+++.++..+++...+.... .
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~ 196 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-I 196 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-C
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 45789999999664444455555555444456778877765431 1111 1124689999999999999887652211 1
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAKTLG 141 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~~~~ 141 (777)
... .+.+..+++.++|.|..+..+.
T Consensus 197 ~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 197 AHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 111 2557788999999998775544
No 183
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.68 E-value=0.84 Score=43.47 Aligned_cols=99 Identities=13% Similarity=0.094 Sum_probs=57.5
Q ss_pred eEEEEEeCCCccchhc--hhhhccccCCC-CCCc-EEEEEeec---------HHHHhhcccCCccccCCCChHhHHHHHH
Q 048758 38 KFLLVLDDLWNENYNS--WCTLSCPFGAG-ASGS-KIVVTHRN---------QDVAATMRAVSGKTLKELSDDDCLRVLI 104 (777)
Q Consensus 38 ~~LlvLDdv~~~~~~~--~~~~~~~~~~~-~~gs-~iiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 104 (777)
..+||+||++.-.... .+.+...+... ..+. ++|+||+. ..+...+.....+.+++++.++..+++.
T Consensus 105 ~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~ 184 (242)
T 3bos_A 105 FDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQ 184 (242)
T ss_dssp SSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHH
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHH
Confidence 5689999995532212 22222221111 1122 48887763 2233333333678999999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 105 QHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
..+..... ... .+....+++.++|.+-.+..+
T Consensus 185 ~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 185 RRAAMRGL-QLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHTTC-CCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHcCC-CCC---HHHHHHHHHHccCCHHHHHHH
Confidence 87632211 122 256778888899888665443
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.30 E-value=2.6 Score=44.49 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=60.7
Q ss_pred HhCCCeEEEEEeCCCccch--hchhhhccccCC-CCCCcEEEEEeec---------HHHHhhcccCCccccCCCChHhHH
Q 048758 33 RLSGKKFLLVLDDLWNENY--NSWCTLSCPFGA-GASGSKIVVTHRN---------QDVAATMRAVSGKTLKELSDDDCL 100 (777)
Q Consensus 33 ~L~~~~~LlvLDdv~~~~~--~~~~~~~~~~~~-~~~gs~iiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~ 100 (777)
.+..+.-+|+|||+..-.. ...+.+...+.. ...|..||+||.. ..+..++....++.+++++.++-.
T Consensus 190 ~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~ 269 (440)
T 2z4s_A 190 KYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_dssp HHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHH
T ss_pred HhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHH
Confidence 3343667999999954321 112222222211 1346788988876 334444544567899999999999
Q ss_pred HHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHH
Q 048758 101 RVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 101 ~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal 137 (777)
+++...+.... ...++ +....|++.++|.+-.+
T Consensus 270 ~iL~~~~~~~~-~~i~~---e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 270 SIARKMLEIEH-GELPE---EVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHHHHHHHT-CCCCT---THHHHHHHHCCSCHHHH
T ss_pred HHHHHHHHHcC-CCCCH---HHHHHHHHhcCCCHHHH
Confidence 99988763211 11222 34667778888887544
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.83 E-value=4.9 Score=40.49 Aligned_cols=96 Identities=15% Similarity=0.097 Sum_probs=63.1
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYF 113 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~ 113 (777)
+++-++|+|+++.-.....+.+...+.....+..+|++|.+.+ +..... --..+.+.+++.++..+.+.... .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-~---- 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-T---- 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-C----
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-C----
Confidence 4577899999976544444555555554455677787776653 222221 12468999999999999888765 1
Q ss_pred CCChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 114 NIPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 114 ~~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
.. .+.+..+++.++|.|.....+
T Consensus 182 -~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 182 -MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp -CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred -CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 145677889999999655443
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=78.43 E-value=3.4 Score=41.98 Aligned_cols=101 Identities=10% Similarity=0.138 Sum_probs=60.8
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
++-++|||++..-.....+.+...+.....+.++|+||.+.. +..... --..+++.+++.++..+.+...+....- .
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 212 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-Q 212 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-E
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-C
Confidence 455999999966433333444444433345678888887643 111111 1246899999999999998877632111 1
Q ss_pred CChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 115 IPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
.+. .+.+..|++.++|.+-.+..+
T Consensus 213 ~~~--~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 213 LET--KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp ECC--SHHHHHHHHHHTTCHHHHHHH
T ss_pred CCc--HHHHHHHHHHcCCCHHHHHHH
Confidence 110 156778888889888544333
No 187
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=74.61 E-value=20 Score=34.56 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=60.4
Q ss_pred HhCCCeEEEEEeCCCcc----------chhchhhhccccC---CCCCCcEEEEEeecHHHHhhcc----cCCccccCCCC
Q 048758 33 RLSGKKFLLVLDDLWNE----------NYNSWCTLSCPFG---AGASGSKIVVTHRNQDVAATMR----AVSGKTLKELS 95 (777)
Q Consensus 33 ~L~~~~~LlvLDdv~~~----------~~~~~~~~~~~~~---~~~~gs~iiiTTR~~~v~~~~~----~~~~~~l~~L~ 95 (777)
..+.+..+|+|||+..- .......+...+. ..+.+..||.||...+...... -...+.+++++
T Consensus 120 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred HHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc
Confidence 33567899999998431 1111222222222 2334455777887776554421 13457888888
Q ss_pred h-HhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCC------chhHHHHHHhhcCCCCChhHHHHHHh
Q 048758 96 D-DDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKG------LPLAAKTLGGLLSGKDDLNDWEFVLN 158 (777)
Q Consensus 96 ~-~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g------lPlal~~~~~~l~~~~~~~~w~~~~~ 158 (777)
. ++-.+++.... ... .+....+++.+.| ++-++.++-.+-... ....|..++.
T Consensus 200 ~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-~~~~~~~~~~ 259 (272)
T 1d2n_A 200 TGEQLLEALELLG------NFK---DKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-PEYRVRKFLA 259 (272)
T ss_dssp EHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-GGGHHHHHHH
T ss_pred HHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-hHHHHHHHHH
Confidence 8 55555554421 111 2456677777776 555555544443322 2344444443
No 188
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=67.75 E-value=44 Score=33.27 Aligned_cols=98 Identities=13% Similarity=0.059 Sum_probs=56.7
Q ss_pred CCeEEEEEeCCCccchhchhhhccccCCC------------------CCCcEEEEEeecHH-----HHhhcccCCccccC
Q 048758 36 GKKFLLVLDDLWNENYNSWCTLSCPFGAG------------------ASGSKIVVTHRNQD-----VAATMRAVSGKTLK 92 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~~~~~~~~~~~~~------------------~~gs~iiiTTR~~~-----v~~~~~~~~~~~l~ 92 (777)
.+..+|+||++..-.......+...+... .++.++|.+|.... +... ....+.+.
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R--~~~~i~l~ 182 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR--FGMQFRLE 182 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT--CSEEEECC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh--cCEEeeCC
Confidence 45678999999654333233332222211 11345666665432 2222 23578999
Q ss_pred CCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 048758 93 ELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKT 139 (777)
Q Consensus 93 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 139 (777)
+++.++..+++...+..... ... .+....+++.+.|.|-.+..
T Consensus 183 ~~~~~e~~~il~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 183 FYKDSELALILQKAALKLNK-TCE---EKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-EEC---HHHHHHHHHTTTTCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHHCcCHHHHHH
Confidence 99999999999877632211 111 25667788888999854443
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=65.97 E-value=17 Score=36.64 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=61.0
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
++-+|++|++..-.......+...+.......++|++|.... +..... ....+.+.+++.++..+.+...+.... ..
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~-~~ 211 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQEN-VK 211 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTT-CC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhC-CC
Confidence 456999999965433333444444444445567887775443 111111 113688999999999998888763321 11
Q ss_pred CChhHHHHHHHHHHHcCCchhHHHHH
Q 048758 115 IPQSLKEVAEKIAKKCKGLPLAAKTL 140 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glPlal~~~ 140 (777)
.+ .+....+++.++|.|-.+..+
T Consensus 212 i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 212 CD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22 256788899999998764433
No 190
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=60.89 E-value=30 Score=34.21 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=72.7
Q ss_pred hHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHh---CCCeEEEEEeCCCccchhchhhhccccCCC-CCCc--EEEEEeec
Q 048758 3 RISKSILNSVAKDQSNNDDDLNSLQVKLKERL---SGKKFLLVLDDLWNENYNSWCTLSCPFGAG-ASGS--KIVVTHRN 76 (777)
Q Consensus 3 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~L---~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~-~~gs--~iiiTTR~ 76 (777)
.+.+.|.+++.+... ......+..+.+.+.+ +++++++|||+++.-. +-+.+...+.|. ..++ .||.++..
T Consensus 96 ~~~~~I~~~L~g~~~-~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 96 ALYEKIWFAISKENL-CGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGH 172 (318)
T ss_dssp HHHHHHHHHHSCCC---CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCS
T ss_pred HHHHHHHHHhcCCCC-CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecC
Confidence 355667777754432 1122233344444444 4668999999995532 111221111110 1223 33344433
Q ss_pred HH-----H----HhhcccCCccccCCCChHhHHHHHHHhhcCCCCC----------------------------------
Q 048758 77 QD-----V----AATMRAVSGKTLKELSDDDCLRVLIQHSLGARYF---------------------------------- 113 (777)
Q Consensus 77 ~~-----v----~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~---------------------------------- 113 (777)
.+ + ..++. ...+.+++++.+|-.+++..++-.....
T Consensus 173 ~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (318)
T 3te6_A 173 NVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINH 251 (318)
T ss_dssp SCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECE
T ss_pred cccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccc
Confidence 22 1 11221 1468899999999999998886321110
Q ss_pred -CCChhHHHHHHHHHHHcCCchhHHHHHHhhc
Q 048758 114 -NIPQSLKEVAEKIAKKCKGLPLAAKTLGGLL 144 (777)
Q Consensus 114 -~~~~~~~~~~~~i~~~c~glPlal~~~~~~l 144 (777)
..+..++-.|++++...|..-.||.++-.+.
T Consensus 252 ~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~ 283 (318)
T 3te6_A 252 KINNKITQLIAKNVANVSGSTEKAFKICEAAV 283 (318)
T ss_dssp ECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhhCChHHHHHHHHHHHH
Confidence 1233455666666667777878877665444
No 191
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=57.88 E-value=43 Score=32.27 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=53.4
Q ss_pred CCCeEEEEEeCCCcc-----------c---hhchhhhccccC--CCCCCcEEEEEeecHHHH-----hhcccCCccccCC
Q 048758 35 SGKKFLLVLDDLWNE-----------N---YNSWCTLSCPFG--AGASGSKIVVTHRNQDVA-----ATMRAVSGKTLKE 93 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~-----------~---~~~~~~~~~~~~--~~~~gs~iiiTTR~~~v~-----~~~~~~~~~~l~~ 93 (777)
..+..+|+|||++.- . ...+..+...+. ....+..||.||...+.. ........+.++.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~ 187 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPA 187 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCC
T ss_pred HcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECC
Confidence 355689999999431 0 011222222221 123466788888754332 1111234689999
Q ss_pred CChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCC-chhHH
Q 048758 94 LSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKG-LPLAA 137 (777)
Q Consensus 94 L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal 137 (777)
++.++..++|...+..... ..... ...++..+.| .|-.|
T Consensus 188 p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 188 PDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAEL 227 (285)
T ss_dssp CCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHH
Confidence 9999999999888643321 11122 3455666666 34333
No 192
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=55.22 E-value=6.9 Score=35.54 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHHHHHHHhCCCeE-EEEEeCCCcc---chhchhhhccccCCCCCCcEEEEEeecHH
Q 048758 25 SLQVKLKERLSGKKF-LLVLDDLWNE---NYNSWCTLSCPFGAGASGSKIVVTHRNQD 78 (777)
Q Consensus 25 ~~~~~l~~~L~~~~~-LlvLDdv~~~---~~~~~~~~~~~~~~~~~gs~iiiTTR~~~ 78 (777)
..-+..++.+.+.+| |||||++-.. .....+.+...+...-.+.-||||+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 345566777777777 9999998211 12333444444444445678999999874
No 193
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=52.89 E-value=46 Score=33.24 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=69.7
Q ss_pred CCHHHHHHHHHHH-hCCCeEEEEEeCCCc-cchhchhhhccccCCCCCCcEEEEEeec-------HHHHhhcc-cCCccc
Q 048758 21 DDLNSLQVKLKER-LSGKKFLLVLDDLWN-ENYNSWCTLSCPFGAGASGSKIVVTHRN-------QDVAATMR-AVSGKT 90 (777)
Q Consensus 21 ~~~~~~~~~l~~~-L~~~~~LlvLDdv~~-~~~~~~~~~~~~~~~~~~gs~iiiTTR~-------~~v~~~~~-~~~~~~ 90 (777)
.+..+..+.+... +-+++-++|+|++.. .....++.+...+....+++.+|++|.. ..+..... ...+++
T Consensus 59 ~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~ 138 (343)
T 1jr3_D 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVT 138 (343)
T ss_dssp CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEE
T ss_pred CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEE
Confidence 5566666555432 345667788899865 3334555565555544457777776643 23444432 235688
Q ss_pred cCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchhHHHH
Q 048758 91 LKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPLAAKT 139 (777)
Q Consensus 91 l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPlal~~ 139 (777)
..+++.++..+.....+-... ...+ .+.+..+++.++|...++..
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g-~~i~---~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLN-LELD---DAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTT-CEEC---HHHHHHHHHSSTTCHHHHHH
T ss_pred eeCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhchHHHHHHH
Confidence 899999888877766652211 1112 25677888888988766543
No 194
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=52.36 E-value=49 Score=31.32 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=51.9
Q ss_pred CCCeEEEEEeCCCccc---------------hhchhhhccccCC--CCCCcEEEEEeecHHHHhh-c----ccCCccccC
Q 048758 35 SGKKFLLVLDDLWNEN---------------YNSWCTLSCPFGA--GASGSKIVVTHRNQDVAAT-M----RAVSGKTLK 92 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~~---------------~~~~~~~~~~~~~--~~~gs~iiiTTR~~~v~~~-~----~~~~~~~l~ 92 (777)
.....+|+|||++.-. ...+..+...+.. ...+..||.||........ . .....+.++
T Consensus 96 ~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~ 175 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFID 175 (262)
T ss_dssp HTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECC
T ss_pred hcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeC
Confidence 3457899999995420 0111222222222 1235566667755442211 1 112457789
Q ss_pred CCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCchh
Q 048758 93 ELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 93 ~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 135 (777)
.++.++-.+++...+..... ..........+++.+.|.+-
T Consensus 176 ~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 176 LPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp SCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCH
T ss_pred CcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCH
Confidence 99999999999887633221 11222234677777877753
No 195
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.83 E-value=15 Score=39.59 Aligned_cols=100 Identities=10% Similarity=0.266 Sum_probs=56.0
Q ss_pred CCeEEEEEeCCCccchh---chhhhccccCCCCCCcEEEEEeecHHH--Hhhc-ccCCccccCCCChHhHHHHHHHhhcC
Q 048758 36 GKKFLLVLDDLWNENYN---SWCTLSCPFGAGASGSKIVVTHRNQDV--AATM-RAVSGKTLKELSDDDCLRVLIQHSLG 109 (777)
Q Consensus 36 ~~~~LlvLDdv~~~~~~---~~~~~~~~~~~~~~gs~iiiTTR~~~v--~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~ 109 (777)
.++.+||+|+|..-... .+..+...+.. .+.+||+++.+... .... .....+.+++++.++..+.+...+..
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~ 224 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR 224 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56789999999543211 11223222222 23456666654321 1111 12246899999999999988776643
Q ss_pred CCCCCCChhHHHHHHHHHHHcCC-chhHHHHHH
Q 048758 110 ARYFNIPQSLKEVAEKIAKKCKG-LPLAAKTLG 141 (777)
Q Consensus 110 ~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~~ 141 (777)
... ...+ +....|++.++| ++-++..+.
T Consensus 225 ~~~-~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 225 EKF-KLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HTC-CCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred cCC-CCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 221 1222 346778888888 555565553
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=51.28 E-value=7.1 Score=39.03 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=51.4
Q ss_pred eEEEEEeCCCccch--hchhhhccccCC-CCCCcEEEEEeec---------HHHHhhcccCCccccCCCChHhHHHHHHH
Q 048758 38 KFLLVLDDLWNENY--NSWCTLSCPFGA-GASGSKIVVTHRN---------QDVAATMRAVSGKTLKELSDDDCLRVLIQ 105 (777)
Q Consensus 38 ~~LlvLDdv~~~~~--~~~~~~~~~~~~-~~~gs~iiiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 105 (777)
.-+|++||+..-.. .....+...+.. ...|.+||+||.. ..+...+....++.+++ +.++-.+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999954221 111222222211 1235678888753 22333443445689999 99999999988
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHHcCCch
Q 048758 106 HSLGARYFNIPQSLKEVAEKIAKKCKGLP 134 (777)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~i~~~c~glP 134 (777)
.+..... ..++ +....+++.+ |..
T Consensus 178 ~~~~~~~-~l~~---~~l~~l~~~~-g~~ 201 (324)
T 1l8q_A 178 KLKEFNL-ELRK---EVIDYLLENT-KNV 201 (324)
T ss_dssp HHHHTTC-CCCH---HHHHHHHHHC-SSH
T ss_pred HHHhcCC-CCCH---HHHHHHHHhC-CCH
Confidence 7743221 2222 4566677777 554
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=45.45 E-value=1.4e+02 Score=29.89 Aligned_cols=108 Identities=7% Similarity=-0.059 Sum_probs=57.8
Q ss_pred HHHHHHHh-CCCeEEEEEeCCCccchh-----------chhhhccccC---CCCCCcEEEEEeecHH-----HHhhcccC
Q 048758 27 QVKLKERL-SGKKFLLVLDDLWNENYN-----------SWCTLSCPFG---AGASGSKIVVTHRNQD-----VAATMRAV 86 (777)
Q Consensus 27 ~~~l~~~L-~~~~~LlvLDdv~~~~~~-----------~~~~~~~~~~---~~~~gs~iiiTTR~~~-----v~~~~~~~ 86 (777)
...+.+.. ..+..+|+||+++.-... ....+...+. ....+..||.||...+ +..+ ..
T Consensus 132 ~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR--f~ 209 (355)
T 2qp9_X 132 VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--FE 209 (355)
T ss_dssp HHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT--CC
T ss_pred HHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc--cC
Confidence 33343333 356789999999542110 0122222221 1234555666665442 2232 23
Q ss_pred CccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCc-hhHHHHH
Q 048758 87 SGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGL-PLAAKTL 140 (777)
Q Consensus 87 ~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~ 140 (777)
..+.+...+.++-.++|..+...... ... ......|++.+.|. +-.|..+
T Consensus 210 ~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 210 RRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 56788999999999999887643321 111 24566777888874 4444443
No 198
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=43.07 E-value=20 Score=35.35 Aligned_cols=85 Identities=8% Similarity=0.042 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHhC-----CCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecH-HHHhhcccCCccccCCC
Q 048758 21 DDLNSLQVKLKERLS-----GKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQ-DVAATMRAVSGKTLKEL 94 (777)
Q Consensus 21 ~~~~~~~~~l~~~L~-----~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~-~v~~~~~~~~~~~l~~L 94 (777)
..++...+ +.+... +++-++|+|++..-.....+.+...+-...+.+.+|++|.+. .+....... .+++.++
T Consensus 62 ~~id~ir~-li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l 139 (305)
T 2gno_A 62 IGIDDIRT-IKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVN 139 (305)
T ss_dssp BCHHHHHH-HHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECC
T ss_pred CCHHHHHH-HHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCC
Confidence 34455444 444443 346689999997755555566665555555667888777554 343444445 8999999
Q ss_pred ChHhHHHHHHHhh
Q 048758 95 SDDDCLRVLIQHS 107 (777)
Q Consensus 95 ~~~ea~~Lf~~~~ 107 (777)
++++..+.+...+
T Consensus 140 ~~~~i~~~L~~~~ 152 (305)
T 2gno_A 140 VPKEFRDLVKEKI 152 (305)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999887765
No 199
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=41.08 E-value=1.2e+02 Score=29.77 Aligned_cols=110 Identities=9% Similarity=-0.058 Sum_probs=60.1
Q ss_pred HHHHHHHHh-CCCeEEEEEeCCCccch-----------hchhhhccc---cCCCCCCcEEEEEeecHHH-----Hhhccc
Q 048758 26 LQVKLKERL-SGKKFLLVLDDLWNENY-----------NSWCTLSCP---FGAGASGSKIVVTHRNQDV-----AATMRA 85 (777)
Q Consensus 26 ~~~~l~~~L-~~~~~LlvLDdv~~~~~-----------~~~~~~~~~---~~~~~~gs~iiiTTR~~~v-----~~~~~~ 85 (777)
....+.+.. ..+..+|+||++..-.. .....+... +.....+..||.||...+. ..+ .
T Consensus 98 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R--f 175 (322)
T 3eie_A 98 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--F 175 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH--C
T ss_pred HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc--c
Confidence 333443333 34568999999953210 001122222 2123345566667765432 222 2
Q ss_pred CCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCC-chhHHHHHH
Q 048758 86 VSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKG-LPLAAKTLG 141 (777)
Q Consensus 86 ~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~~ 141 (777)
...+.++..+.++-.++|..++..... ... ......+++.+.| .+-.|..+.
T Consensus 176 ~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 176 ERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 346788889999999999988743321 111 2456677777777 454555444
No 200
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=40.19 E-value=64 Score=31.77 Aligned_cols=107 Identities=20% Similarity=0.175 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHhC-----CCeEEEEEeCCCccc-hhchhhhccccCCCCCCcEEEEEeecHH-----HHhhcccCCcccc
Q 048758 23 LNSLQVKLKERLS-----GKKFLLVLDDLWNEN-YNSWCTLSCPFGAGASGSKIVVTHRNQD-----VAATMRAVSGKTL 91 (777)
Q Consensus 23 ~~~~~~~l~~~L~-----~~~~LlvLDdv~~~~-~~~~~~~~~~~~~~~~gs~iiiTTR~~~-----v~~~~~~~~~~~l 91 (777)
.+...+.+.+... +++-++|+||+..-. ....+.+...+.....+.++|+||.... +..++ ..+.+
T Consensus 86 ~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~~i~~ 162 (324)
T 3u61_B 86 IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---RVITF 162 (324)
T ss_dssp HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---EEEEC
T ss_pred HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---cEEEe
Confidence 4444444444432 267899999996543 3333444433333335678888886654 22222 36889
Q ss_pred CCCChHhHHHHHHH-------hhcCCCCCCCChhHHHHHHHHHHHcCCchh
Q 048758 92 KELSDDDCLRVLIQ-------HSLGARYFNIPQSLKEVAEKIAKKCKGLPL 135 (777)
Q Consensus 92 ~~L~~~ea~~Lf~~-------~~~~~~~~~~~~~~~~~~~~i~~~c~glPl 135 (777)
++++.++-.+++.. .+.. .....++ .+....+++.++|.+-
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~-~~~~~~~--~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKH-EGIAIAD--MKVVAALVKKNFPDFR 210 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHH-HTCCBSC--HHHHHHHHHHTCSCTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCCc--HHHHHHHHHhCCCCHH
Confidence 99998874333222 2211 1111111 2556667777777654
No 201
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=37.27 E-value=66 Score=32.34 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=53.1
Q ss_pred EEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeec-----------------HHHHhhcccCCccccCCCChHhHHH
Q 048758 39 FLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRN-----------------QDVAATMRAVSGKTLKELSDDDCLR 101 (777)
Q Consensus 39 ~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~-----------------~~v~~~~~~~~~~~l~~L~~~ea~~ 101 (777)
.+|+||++..-.......+...+.+.... .++++|.. +.+..++. .+.+++++.++..+
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~---~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL---IVSTTPYSEKDTKQ 266 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEE---EEEECCCCHHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhcc---EEEecCCCHHHHHH
Confidence 59999999664444444444444333222 34444421 33444442 37999999999999
Q ss_pred HHHHhhcCCCCCCCChhHHHHHHHHHHHcC-CchhHH
Q 048758 102 VLIQHSLGARYFNIPQSLKEVAEKIAKKCK-GLPLAA 137 (777)
Q Consensus 102 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~-glPlal 137 (777)
++...+..... ... .+....+++.+. |.|-.+
T Consensus 267 il~~~~~~~~~-~~~---~~~l~~l~~~~~~G~~r~~ 299 (368)
T 3uk6_A 267 ILRIRCEEEDV-EMS---EDAYTVLTRIGLETSLRYA 299 (368)
T ss_dssp HHHHHHHHTTC-CBC---HHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHcCC-CCC---HHHHHHHHHHhcCCCHHHH
Confidence 99877643221 122 256677788876 666433
No 202
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=35.29 E-value=28 Score=34.11 Aligned_cols=70 Identities=7% Similarity=0.053 Sum_probs=44.6
Q ss_pred CeEEEEEeCCCcc---------chhchhhhccccCCCCCCcEEEEEeecHH----------HHhhcccCCccccCCCChH
Q 048758 37 KKFLLVLDDLWNE---------NYNSWCTLSCPFGAGASGSKIVVTHRNQD----------VAATMRAVSGKTLKELSDD 97 (777)
Q Consensus 37 ~~~LlvLDdv~~~---------~~~~~~~~~~~~~~~~~gs~iiiTTR~~~----------v~~~~~~~~~~~l~~L~~~ 97 (777)
+..+|+||+++.- .......+...+.....+..||.||.... +..++ ...+.+++++.+
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~ 207 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDE 207 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHH
Confidence 3459999999622 22333444444444455677888875432 22222 257899999999
Q ss_pred hHHHHHHHhhc
Q 048758 98 DCLRVLIQHSL 108 (777)
Q Consensus 98 ea~~Lf~~~~~ 108 (777)
+-.+++...+.
T Consensus 208 ~~~~il~~~l~ 218 (309)
T 3syl_A 208 ELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987763
No 203
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=30.33 E-value=36 Score=30.05 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=34.9
Q ss_pred CCCeEEEEEeCCCccch-------hc-hhhhccccCCCCCCcEEEEEeecHHHHhhc------ccC-CccccCCCChHhH
Q 048758 35 SGKKFLLVLDDLWNENY-------NS-WCTLSCPFGAGASGSKIVVTHRNQDVAATM------RAV-SGKTLKELSDDDC 99 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~~~-------~~-~~~~~~~~~~~~~gs~iiiTTR~~~v~~~~------~~~-~~~~l~~L~~~ea 99 (777)
.+++.+|||||+..-.. .+ ...+. .+... .+..+|+||......... ... ..+.+.+++.++.
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~-~~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~ 190 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLK-PALAR-GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDT 190 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHH-HHHHT-TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHH-Hhhcc-CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHH
Confidence 35678999999954310 11 11221 11122 245677777665432211 111 2477888888777
Q ss_pred HHHH
Q 048758 100 LRVL 103 (777)
Q Consensus 100 ~~Lf 103 (777)
.+++
T Consensus 191 ~~il 194 (195)
T 1jbk_A 191 IAIL 194 (195)
T ss_dssp HTTC
T ss_pred HHHh
Confidence 6543
No 204
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=28.59 E-value=4.2e+02 Score=25.80 Aligned_cols=112 Identities=7% Similarity=-0.007 Sum_probs=60.4
Q ss_pred HHHHHHHHHHh-CCCeEEEEEeCCCccch-------h----chhhhccccC---CCCCCcEEEEEeecHH-----HHhhc
Q 048758 24 NSLQVKLKERL-SGKKFLLVLDDLWNENY-------N----SWCTLSCPFG---AGASGSKIVVTHRNQD-----VAATM 83 (777)
Q Consensus 24 ~~~~~~l~~~L-~~~~~LlvLDdv~~~~~-------~----~~~~~~~~~~---~~~~gs~iiiTTR~~~-----v~~~~ 83 (777)
+.....+.+.. ..+..+|++|+++.-.. . ....+...+. ....+..||.||...+ +..+
T Consensus 91 ~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rR- 169 (322)
T 1xwi_A 91 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR- 169 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHT-
T ss_pred HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhh-
Confidence 34444444443 45678999999954210 0 0111111111 1234445555664432 2222
Q ss_pred ccCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCc-hhHHHHHH
Q 048758 84 RAVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGL-PLAAKTLG 141 (777)
Q Consensus 84 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~~ 141 (777)
.+..+.++..+.++-.++|..+...... ... ......+++.+.|. +-.|..+.
T Consensus 170 -f~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 170 -FEKRIYIPLPEPHARAAMFKLHLGTTQN-SLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp -CCEEEECCCCCHHHHHHHHHHHHTTCCB-CCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred -cCeEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 2356788999999999999887633221 111 24567788888886 44455444
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=28.41 E-value=1.2e+02 Score=30.06 Aligned_cols=97 Identities=8% Similarity=0.077 Sum_probs=55.1
Q ss_pred CeEEEEEeCCCccchhchhhhccccCCCCCCcEEEEEeecHH-HHhhcc-cCCccccCCCChHhHHHHHHHhhcCCCCCC
Q 048758 37 KKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVVTHRNQD-VAATMR-AVSGKTLKELSDDDCLRVLIQHSLGARYFN 114 (777)
Q Consensus 37 ~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iiiTTR~~~-v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~ 114 (777)
.+-++|+|++..-.....+.+...+.......++|++|.... +..... --..+.+.+++.++..+.+...+-... ..
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~ 188 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK-LK 188 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT-CC
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcC-CC
Confidence 467899999955333333334333333334567777765432 111111 113578899999988887776552211 11
Q ss_pred CChhHHHHHHHHHHHcCCchhHH
Q 048758 115 IPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 115 ~~~~~~~~~~~i~~~c~glPlal 137 (777)
.. .+..+.+++.++|.+-.+
T Consensus 189 i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 189 LS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp BC---HHHHHHHHHHHTTCHHHH
T ss_pred CC---HHHHHHHHHHcCCCHHHH
Confidence 22 256777888889887543
No 206
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=26.78 E-value=42 Score=18.26 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=14.3
Q ss_pred ccCCCCCCcEEEEEeecH
Q 048758 60 PFGAGASGSKIVVTHRNQ 77 (777)
Q Consensus 60 ~~~~~~~gs~iiiTTR~~ 77 (777)
++|....|+.++|||...
T Consensus 3 PlPa~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTA 20 (26)
T ss_pred cccccccCceEEEEeccC
Confidence 567777899999999654
No 207
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=25.71 E-value=2.2e+02 Score=28.43 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=41.2
Q ss_pred CcEEEEEeecHH-----HHhhcccCCccccCCCChHhHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCC-chhHHHHH
Q 048758 67 GSKIVVTHRNQD-----VAATMRAVSGKTLKELSDDDCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKG-LPLAAKTL 140 (777)
Q Consensus 67 gs~iiiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPlal~~~ 140 (777)
+..||.||...+ +..+ ....+.+...+.++..+++...+..... ... ......+++.+.| .+-+|..+
T Consensus 221 ~v~vI~atn~~~~l~~~l~~R--f~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 221 RILVVGATNRPQEIDEAARRR--LVKRLYIPLPEASARKQIVINLMSKEQC-CLS---EEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp CEEEEEEESCGGGBCHHHHTT--CCEEEECCCCCHHHHHHHHHHHHHTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCChhhCCHHHHhh--CceEEEeCCcCHHHHHHHHHHHHhhcCC-Ccc---HHHHHHHHHHcCCCCHHHHHHH
Confidence 445665665432 2222 2346788889999999988877633221 111 2566778888888 45566555
Q ss_pred H
Q 048758 141 G 141 (777)
Q Consensus 141 ~ 141 (777)
.
T Consensus 295 ~ 295 (357)
T 3d8b_A 295 C 295 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 208
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.22 E-value=2.2e+02 Score=29.56 Aligned_cols=98 Identities=19% Similarity=0.126 Sum_probs=53.2
Q ss_pred CCCeEEEEEeCCCccchhchhhhccccCCCCCCcEEEE-EeecHH------HHhhcccCCccccCCCChHhHHHHHHHhh
Q 048758 35 SGKKFLLVLDDLWNENYNSWCTLSCPFGAGASGSKIVV-THRNQD------VAATMRAVSGKTLKELSDDDCLRVLIQHS 107 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~~~~~~~~~~~~~~~~~~gs~iii-TTR~~~------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~~ 107 (777)
..++.+|+||++..-.....+.+...+.. +. ..+|. ||.+.. +..+ -.++.+.+++.++..+++...+
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~-v~lI~att~n~~~~l~~aL~sR---~~v~~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-GT-ITFIGATTENPSFELNSALLSR---ARVYLLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-TS-CEEEEEESSCGGGSSCHHHHTT---EEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-Cc-eEEEecCCCCcccccCHHHhCc---eeEEeeCCcCHHHHHHHHHHHH
Confidence 46788999999966433333444433332 22 33443 554432 2222 2368899999999999988876
Q ss_pred cCCCCC---CCChhHHHHHHHHHHHcCCchhHH
Q 048758 108 LGARYF---NIPQSLKEVAEKIAKKCKGLPLAA 137 (777)
Q Consensus 108 ~~~~~~---~~~~~~~~~~~~i~~~c~glPlal 137 (777)
...... ....--.+....+++.++|.+-.+
T Consensus 179 ~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~l 211 (447)
T 3pvs_A 179 EDKTRGYGGQDIVLPDETRRAIAELVNGDARRA 211 (447)
T ss_dssp HCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHH
T ss_pred HHHhhhhccccCcCCHHHHHHHHHHCCCCHHHH
Confidence 431100 000011256677778888887443
No 209
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=20.01 E-value=3.5e+02 Score=27.90 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=56.2
Q ss_pred CCCeEEEEEeCCCccch-----------hchhhhccccCC---CCCCcEEEEEeecHHHHhh-c--ccCCccccCCCChH
Q 048758 35 SGKKFLLVLDDLWNENY-----------NSWCTLSCPFGA---GASGSKIVVTHRNQDVAAT-M--RAVSGKTLKELSDD 97 (777)
Q Consensus 35 ~~~~~LlvLDdv~~~~~-----------~~~~~~~~~~~~---~~~gs~iiiTTR~~~v~~~-~--~~~~~~~l~~L~~~ 97 (777)
..+..+|+||+++.-.. .....+...+.. ...+..||.||........ . .....+.++..+.+
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~ 304 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAH 304 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHH
Confidence 35678999999954210 011222222222 2345666667755432111 0 12346788888999
Q ss_pred hHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHcCCc-hhHHHHHH
Q 048758 98 DCLRVLIQHSLGARYFNIPQSLKEVAEKIAKKCKGL-PLAAKTLG 141 (777)
Q Consensus 98 ea~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-Plal~~~~ 141 (777)
+-.++|..+...... ... ......+++.+.|. +-.|..+.
T Consensus 305 ~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 305 ARAAMFRLHLGSTQN-SLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHHHTTSCE-ECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999887643221 111 24566777888884 44554443
Done!