BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048759
(442 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJC8|MTER1_CHICK mTERF domain-containing protein 1, mitochondrial OS=Gallus gallus
GN=MTERFD1 PE=2 SV=1
Length = 405
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 115 ELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVT 174
++ ++ FL+ + +E +G L K P +LG +LE + T VAYL S +I MV+
Sbjct: 175 DITKILLFLKDVGIEDNQLGPFLTKNPYILGEELEA-LETRVAYLKSKKFGNAEITQMVS 233
Query: 175 QYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVD-CLIS 233
+ PY L V + L + LGL +K ++ + +L LE VK N+ C +
Sbjct: 234 RAPYLLLFSVERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLE-PVKENLQVCQVE 292
Query: 234 FGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNL 269
FG R ++ + + P+I+ K + Y N+
Sbjct: 293 FGFERNEVQQIAFKTPKILTASKKRLRQTFDYLHNI 328
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 262 SQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCP 321
+++ F + I+ ++ + K P ++ + V +L + + ++ +MV + P
Sbjct: 177 TKILLFLKDVGIEDNQLGPFLTKNPYILGEELEALETRVAYLKSKKFGNAEITQMVSRAP 236
Query: 322 QLIACRVELMKNSFYFFKSEMGRPIKE----LIEFPEYFTYSLE 361
L+ VE + N FFK+E+G +K+ +I FP T LE
Sbjct: 237 YLLLFSVERLDNRLGFFKNELGLSVKKTKDLVIRFPRLLTGKLE 280
>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
GN=Mterfd1 PE=2 SV=1
Length = 412
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 102/217 (47%), Gaps = 4/217 (1%)
Query: 153 STSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKR 212
S ++ LV +GV I L + IK ++ +L LGL L L K
Sbjct: 148 SKTLQKLVQLGVDLSKIEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKN 207
Query: 213 VYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLK 272
I DLE +K V L S + +A ++ P ++ ++ ++ ++L FF +L+
Sbjct: 208 YAIFSEDLE-NLKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSVE-RLDNRLGFFQKELE 265
Query: 273 IDPDEFAQVVEKMPQVVSLNQHVIMKSVE-FLLGRGIPSGDLAKMVVQCPQLIACRVELM 331
++ + +V ++P++++ + + ++++ + L G ++ MV++ P+++ +
Sbjct: 266 LNVKKTRDLVVRLPRLLTGSLEPVKENMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKL 325
Query: 332 KNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRY 368
F + + M P +++FP+ F + +IK R+
Sbjct: 326 TEIFDYVHNVMNIPHHIIVKFPQLFNTRV-FKIKERH 361
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 52/263 (19%)
Query: 87 LEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVK----FLRGLDVEKEDIGYVLMKYPE 142
L ++G+ SK ++K+P + + ++ +K FL+ L +E +G L K
Sbjct: 154 LVQLGVDLSK----IEKHPDAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYA 209
Query: 143 LLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPI 202
+ LE + T VAYL S S DI MV P+ L V
Sbjct: 210 IFSEDLEN-LKTRVAYLQSKNFSKTDIARMVKNAPFLLSFSV------------------ 250
Query: 203 KILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSS 262
L+ R+ +LE VK D ++ + P+++ L+ +
Sbjct: 251 ----ERLDNRLGFFQKELELNVKKTRDLVV--------------RLPRLLTGSLEP-VKE 291
Query: 263 QLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLG-RGIPSGDLAKMVVQCP 321
+ ++L+L +E +V K+P++++ N+ + + +++ IP ++V+ P
Sbjct: 292 NMKVYHLELGFKHNEIQHMVIKIPKMLTANKRKLTEIFDYVHNVMNIPHH----IIVKFP 347
Query: 322 QLIACRVELMKNSFYFFKSEMGR 344
QL RV +K + F + +GR
Sbjct: 348 QLFNTRVFKIKER-HLFLAYLGR 369
>sp|Q6P6Q6|MTER1_RAT mTERF domain-containing protein 1, mitochondrial OS=Rattus
norvegicus GN=Mterfd1 PE=2 SV=1
Length = 409
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 54/277 (19%)
Query: 69 PLMLGCSMRKNMIPVFSYLEKI---GIAKSKLGEFVKKYPQV----LHASVVVELMPVVK 121
PL L S + + L+K+ G+ SK ++K+P V L + ++ ++
Sbjct: 130 PLPLSSSTLADYVDHSETLQKLVQLGVDLSK----IEKHPDVANLLLRLNFEKDIKQILL 185
Query: 122 FLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLG 181
FL+ L +E +G L K + LE + T VAYL S S DI MV P+ L
Sbjct: 186 FLKDLGLEDNQLGPFLTKNYAIFSEDLEN-LKTRVAYLQSKNFSKTDIACMVKNAPFLLS 244
Query: 182 MRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKL 241
V L+ R+ +LE +VK D
Sbjct: 245 FSV----------------------ERLDNRLGFFQKELELSVKKTRD------------ 270
Query: 242 ASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVE 301
++ + P+++ L+ + + + L+L +E +V K+P++++ N+ + ++ +
Sbjct: 271 --LVVRLPRLLTGSLEP-VKENMKVYRLELGFKHNEIQHMVTKIPKMLTANKRKLTETFD 327
Query: 302 FLLG-RGIPSGDLAKMVVQCPQLIACRVELMKNSFYF 337
++ IP ++V+ PQ+ RV +K F
Sbjct: 328 YVHNVMNIPHH----IIVKFPQVFNTRVFKIKERHLF 360
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 243 SVIAQYPQIIGLPLKAKMSS---QLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKS 299
S I ++P + L L+ Q+ F L ++ ++ + K + S + +
Sbjct: 159 SKIEKHPDVANLLLRLNFEKDIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTR 218
Query: 300 VEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKE----LIEFPEY 355
V +L + D+A MV P L++ VE + N FF+ E+ +K+ ++ P
Sbjct: 219 VAYLQSKNFSKTDIACMVKNAPFLLSFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRL 278
Query: 356 FTYSLE 361
T SLE
Sbjct: 279 LTGSLE 284
>sp|Q96E29|MTER1_HUMAN mTERF domain-containing protein 1, mitochondrial OS=Homo sapiens
GN=MTERFD1 PE=1 SV=2
Length = 417
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 7/126 (5%)
Query: 243 SVIAQYPQIIGLPLK---AKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKS 299
S I ++P+ L L+ K Q+ F + I+ ++ + K + S + +
Sbjct: 167 SKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLENLKTR 226
Query: 300 VEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKE----LIEFPEY 355
V +L + D+A+MV + P L+ VE + N FF+ E+ +K+ ++ P
Sbjct: 227 VAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRL 286
Query: 356 FTYSLE 361
T SLE
Sbjct: 287 LTGSLE 292
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 39/162 (24%)
Query: 58 LGLTIDDINEYP----LMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQV------ 107
LG+ + I ++P L+L K++ + +L+ +GI ++LG F+ K +
Sbjct: 162 LGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLE 221
Query: 108 --------LHA-----SVVVELMPVVKFLRGLDVEKED--IGY--------------VLM 138
LH+ + V +++ FL VE+ D +G+ +++
Sbjct: 222 NLKTRVAYLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVV 281
Query: 139 KYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFL 180
+ P LL LE Y + +G +I M+T+ P L
Sbjct: 282 RLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKML 323
>sp|Q8KDQ7|G6PI_CHLTE Glucose-6-phosphate isomerase OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=pgi PE=3 SV=1
Length = 559
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 7 GVVQGKKEKLVNRVKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDIN 66
G+ G EKL+ + I+ DEL L S I + E +V F+Q + I+ +
Sbjct: 445 GLSGGDLEKLLPHKLFPGNRPTNTIVLDELNPFNLGSLIALYEHKV-FVQGVVWNINSFD 503
Query: 67 EYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQ 106
++ + LG + K ++P F ++ + + + +Y Q
Sbjct: 504 QWGVELGKQLAKAILPEFDAVDPVETHDASTNALINRYRQ 543
>sp|P70920|ACON_BRAJA Aconitate hydratase OS=Bradyrhizobium japonicum (strain USDA 110)
GN=acnA PE=3 SV=2
Length = 906
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 23/160 (14%)
Query: 49 EERVMFLQKLGLTIDDINEYPLMLGCSMRKNM----IPVFSYLEKIGIAKSKLGEFVKKY 104
+ER FL+ + + P G + N+ V++ EK+ + K K G F Y
Sbjct: 155 QERYEFLKWGQAAFSNFSVVPPGTGICHQVNLEYLSQTVWTKKEKMTVGK-KTGTFEVAY 213
Query: 105 PQVL-----HASVVVELMPVVKFLRGLDVEKEDIGYVL-MKYPELLGFKLEGTMSTSVAY 158
P L H ++V L + + G++ E +G L M P ++GFKL+G M
Sbjct: 214 PDSLVGTDSHTTMVNGLAVLGWGVGGIEAEACMLGQPLSMLLPNVVGFKLKGAMKE---- 269
Query: 159 LVSIGVSPRDIGPMVTQYPYFLGMRVGTMIK---PLVDYL 195
GV+ D+ VTQ LG+ VG ++ P +D+L
Sbjct: 270 ----GVTATDLVLTVTQMLRKLGV-VGKFVEFFGPGLDHL 304
>sp|A2C642|THIC_PROM3 Phosphomethylpyrimidine synthase OS=Prochlorococcus marinus (strain
MIT 9303) GN=thiC PE=3 SV=1
Length = 459
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 24/106 (22%)
Query: 32 IPDELENLELPSTIEVMEERVMFLQKLGLTIDD-----INEYPLMLGCSMRKNMIPVFSY 86
+ +EL+ LEL ++ + VM L G+ +D+ IN P+ +G +PV+
Sbjct: 90 VAEELKKLEL--AVKYGADTVMDLSTGGVNLDEVRTAIINASPVPIG------TVPVYQA 141
Query: 87 LEKIGIAKSKLGE-----FVKKYPQ------VLHASVVVELMPVVK 121
LE + + KL E ++K+ Q +HA +++E +P+VK
Sbjct: 142 LESVHGSIEKLDEDDFLHIIEKHCQQGVDYQTIHAGLLIEHLPLVK 187
>sp|Q4WCL1|CFT1_ASPFU Protein cft1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=cft1 PE=3 SV=2
Length = 1401
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 196 VSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLP 255
+S+G + LA Y+LG K D + R E L VI+ P++
Sbjct: 970 ISIGEQVDHLAYATSSETYVLGTSHSADFKLPDDDELHPDWRNEGL--VISFLPELRQCS 1027
Query: 256 LKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQH----VIMKSVEFLLGRGIPS 310
LK +S + + + PDE+ V+ M VS N H +I+ F G IPS
Sbjct: 1028 LKV-VSPRTWTVIDSYSLGPDEYVMAVKNMDLEVSENTHERRNMIVVGTAFARGEDIPS 1085
>sp|Q7Z6M4|MTER2_HUMAN mTERF domain-containing protein 2 OS=Homo sapiens GN=MTERFD2 PE=1
SV=3
Length = 381
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 232 ISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSL 291
I G+ E + V+ + PQ++ LP+ Y KL + + +V+ P++ ++
Sbjct: 132 ILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYL--QKLGLGEGKLKRVLYCCPEIFTM 189
Query: 292 NQHVIMKSVEFLLGRGIPS-GDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELI 350
Q I +V L + + + + K++ CP ++ + ++ F + MG +++
Sbjct: 190 RQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIV 249
Query: 351 EFPEYFTYSLESRIKPRYQRLQSKG 375
+ EY YSL ++IK R+ L+ G
Sbjct: 250 K-SEYLQYSL-TKIKQRHIYLERLG 272
>sp|Q08365|RR3_CHLRE 30S ribosomal protein S3, chloroplastic OS=Chlamydomonas
reinhardtii GN=rps3 PE=1 SV=2
Length = 712
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 69 PLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDV 128
L G ++R N+ PV S +++ SK +F + L+ +V L ++KF +V
Sbjct: 261 TLRSGSNLRDNLAPVKSKMQRFNNRMSK--KFANLFLTKLNKQFLVRLKAIMKFWHNQNV 318
Query: 129 EKEDIGY 135
K +GY
Sbjct: 319 TKAPLGY 325
>sp|O66805|MURB_AQUAE UDP-N-acetylenolpyruvoylglucosamine reductase OS=Aquifex aeolicus
(strain VF5) GN=murB PE=3 SV=1
Length = 297
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 302 FLLGRGIPS--GDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYS 359
F+LG G + GD+ +VV L +V+ +K F F ++ G P+K+LI F S
Sbjct: 48 FVLGNGSNTIFGDVRGLVVNLKNLKGFKVKEIKGKF-FVEAFSGTPLKDLIRF------S 100
Query: 360 LESRIKPRYQRL---QSKGIRCSMN 381
++ +K Y+ L S G SMN
Sbjct: 101 VKENVKSFYKLLGFPASVGGAVSMN 125
>sp|B2UN91|SYE_AKKM8 Glutamate--tRNA ligase OS=Akkermansia muciniphila (strain ATCC
BAA-835) GN=gltX PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 113 VVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRD 168
V MP++ G + K D+G L YPE GF EG M+ +L +G SP+D
Sbjct: 197 VFAHMPLILNQDGSKMSKRDVGAALGTYPE-EGFLPEGVMN----FLALLGWSPKD 247
>sp|Q7V906|THIC_PROMM Phosphomethylpyrimidine synthase OS=Prochlorococcus marinus (strain
MIT 9313) GN=thiC PE=3 SV=1
Length = 459
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 24/106 (22%)
Query: 32 IPDELENLELPSTIEVMEERVMFLQKLGLTIDD-----INEYPLMLGCSMRKNMIPVFSY 86
+ +EL+ LEL ++ + VM L G+ +D+ IN P+ +G +PV+
Sbjct: 90 VAEELKKLEL--AVKYGADTVMDLSTGGVNLDEVRTAIINASPVPIG------TVPVYQA 141
Query: 87 LEKIGIAKSKLGE-----FVKKYPQ------VLHASVVVELMPVVK 121
LE + + +L E ++K+ Q +HA +++E +P+VK
Sbjct: 142 LESVHGSIEQLDEDDFLHIIEKHCQQGVDYQTIHAGLLIEHLPLVK 187
>sp|Q4A0N1|ARGC_STAS1 N-acetyl-gamma-glutamyl-phosphate reductase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=argC PE=3 SV=1
Length = 343
Score = 32.3 bits (72), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 16/92 (17%)
Query: 297 MKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYF 356
M V + G G + +L ++++Q P + + F S+ +PIKE E
Sbjct: 1 MIEVGIVGGSGYGAIELIRLLIQHPNV--------NIKYIFSHSKQDQPIKETFPHLEQL 52
Query: 357 TYSLESRIKPRYQRLQSKGIRCSMNWFLNCSD 388
TY Y+ L S+GI C + +F S+
Sbjct: 53 TY--------HYETLNSEGIECDVIFFATPSN 76
>sp|Q0HV12|KCY_SHESR Cytidylate kinase OS=Shewanella sp. (strain MR-7) GN=cmk PE=3 SV=1
Length = 230
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 355 YFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGK 414
Y T S E R + RY +LQ KG ++ ERLL IE + + +
Sbjct: 148 YLTASAEERAQRRYNQLQDKGFDVNI------------ERLLAEIIERDDRDMNRPV-AP 194
Query: 415 LVLPGSEVVSDEEDESDDEVL 435
LV +V D D+ DEVL
Sbjct: 195 LVPAEDALVIDTSDKGIDEVL 215
>sp|Q0HIX0|KCY_SHESM Cytidylate kinase OS=Shewanella sp. (strain MR-4) GN=cmk PE=3 SV=1
Length = 230
Score = 32.0 bits (71), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 355 YFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGK 414
Y T S E R + RY +LQ KG ++ ERLL IE + + +
Sbjct: 148 YLTASAEERAQRRYNQLQDKGFDVNI------------ERLLAEIIERDDRDMNRPV-AP 194
Query: 415 LVLPGSEVVSDEEDESDDEVL 435
LV +V D D+ DEVL
Sbjct: 195 LVPAEDALVIDTSDKGIDEVL 215
>sp|A0KWN8|KCY_SHESA Cytidylate kinase OS=Shewanella sp. (strain ANA-3) GN=cmk PE=3 SV=1
Length = 230
Score = 32.0 bits (71), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 355 YFTYSLESRIKPRYQRLQSKGIRCSMNWFLNCSDQRFEERLLGNYIESESSGPSFCIGGK 414
Y T S E R + RY +LQ KG ++ ERLL IE + + +
Sbjct: 148 YLTASAEERAQRRYNQLQDKGFDVNI------------ERLLAEIIERDDRDMNRPV-AP 194
Query: 415 LVLPGSEVVSDEEDESDDEVL 435
LV +V D D+ DEVL
Sbjct: 195 LVPAEDALVIDTSDKGIDEVL 215
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.141 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,664,860
Number of Sequences: 539616
Number of extensions: 6864786
Number of successful extensions: 19119
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 19090
Number of HSP's gapped (non-prelim): 35
length of query: 442
length of database: 191,569,459
effective HSP length: 121
effective length of query: 321
effective length of database: 126,275,923
effective search space: 40534571283
effective search space used: 40534571283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)