Query 048759
Match_columns 442
No_of_seqs 256 out of 1350
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 22:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mva_O Transcription terminati 100.0 9.6E-52 3.3E-56 411.9 23.9 308 81-397 20-341 (343)
2 3mva_O Transcription terminati 100.0 1.2E-45 4.2E-50 367.8 19.4 313 45-370 16-341 (343)
3 3m66_A Mterf3, mterf domain-co 100.0 9.1E-44 3.1E-48 343.1 17.3 247 117-403 6-264 (270)
4 4fp9_B Mterf domain-containing 100.0 8.1E-37 2.8E-41 300.1 18.4 208 188-403 46-268 (335)
5 3m66_A Mterf3, mterf domain-co 100.0 2.7E-36 9.2E-41 290.9 18.0 243 81-368 6-255 (270)
6 4fp9_B Mterf domain-containing 99.9 2E-27 6.8E-32 233.4 16.3 182 152-345 46-228 (335)
7 4fzv_B Mterf domain-containing 99.3 4.4E-11 1.5E-15 100.4 13.6 161 234-398 43-217 (239)
8 4fzv_B Mterf domain-containing 98.6 8.7E-07 3E-11 74.4 14.1 140 197-344 42-182 (239)
9 3ugm_A TAL effector avrbs3/PTH 92.9 0.066 2.3E-06 55.8 3.9 145 89-244 421-568 (1047)
10 4hpz_A Dtale2; DNA binding pro 90.3 1.5 5.2E-05 42.4 10.0 106 26-138 8-118 (463)
11 3ugm_A TAL effector avrbs3/PTH 89.1 3.7 0.00013 43.1 12.3 81 233-318 421-502 (1047)
12 4ae4_A Ubiquitin-associated pr 85.0 9.4 0.00032 30.8 10.4 36 189-232 9-44 (118)
13 1oqy_A HHR23A, UV excision rep 84.4 0.34 1.2E-05 47.6 1.8 37 80-124 168-204 (368)
14 4hpz_A Dtale2; DNA binding pro 84.4 4.6 0.00016 39.1 9.4 108 55-174 8-118 (463)
15 4ae4_A Ubiquitin-associated pr 83.9 13 0.00043 30.1 10.7 88 226-322 10-102 (118)
16 3ff5_A PEX14P, peroxisomal bio 81.3 1.6 5.6E-05 30.1 3.7 35 101-139 19-53 (54)
17 1oqy_A HHR23A, UV excision rep 79.4 3.8 0.00013 40.1 7.2 25 188-212 168-192 (368)
18 3ff5_A PEX14P, peroxisomal bio 70.6 4.5 0.00016 27.9 3.6 33 285-320 22-54 (54)
19 2w84_A Peroxisomal membrane pr 70.2 4.1 0.00014 29.6 3.5 35 101-139 24-58 (70)
20 1ify_A HHR23A, UV excision rep 58.3 11 0.00036 25.3 3.6 25 296-320 8-32 (49)
21 2w84_A Peroxisomal membrane pr 55.2 12 0.0004 27.2 3.5 33 285-320 27-59 (70)
22 2g3q_A Protein YBL047C; endocy 54.6 10 0.00036 24.4 3.0 23 298-320 6-28 (43)
23 3v6t_A DHAX3; tandem repeats, 54.3 71 0.0024 31.3 9.8 271 58-350 65-345 (499)
24 2ooa_A E3 ubiquitin-protein li 53.2 13 0.00043 25.3 3.2 25 295-319 10-34 (52)
25 2cos_A Serine/threonine protei 50.6 18 0.00061 24.8 3.6 44 188-238 9-52 (54)
26 2knz_A Ubiquilin-4; cytoplasm, 50.5 24 0.00081 24.0 4.4 40 186-233 9-49 (53)
27 2aff_B MKI67 FHA domain intera 49.8 5.5 0.00019 25.9 0.9 15 427-441 29-43 (44)
28 3rdw_A Putative arsenate reduc 49.1 56 0.0019 26.0 7.3 79 20-112 19-100 (121)
29 2knz_A Ubiquilin-4; cytoplasm, 48.9 17 0.0006 24.6 3.5 25 294-318 9-34 (53)
30 2oo9_A E3 ubiquitin-protein li 48.8 16 0.00055 24.0 3.1 24 296-319 4-27 (46)
31 1z96_A DNA-damage, UBA-domain 48.8 18 0.00062 22.5 3.4 23 298-320 6-28 (40)
32 1vg5_A RSGI RUH-014, rhomboid 44.8 17 0.00057 26.7 3.1 37 296-339 29-65 (73)
33 1wji_A Tudor domain containing 43.4 21 0.00073 25.2 3.4 36 298-340 11-46 (63)
34 2juj_A E3 ubiquitin-protein li 43.0 26 0.00089 24.0 3.5 24 296-319 7-30 (56)
35 3e3v_A Regulatory protein RECX 43.0 1.3E+02 0.0045 25.6 9.2 136 155-319 24-162 (177)
36 2lbc_A Ubiquitin carboxyl-term 42.5 1.3E+02 0.0044 24.0 8.6 37 189-233 79-115 (126)
37 1ify_A HHR23A, UV excision rep 41.7 42 0.0014 22.2 4.5 38 188-233 8-45 (49)
38 3iab_B Ribonucleases P/MRP pro 41.5 5.6 0.00019 33.0 0.1 14 428-441 119-132 (140)
39 2jy5_A Ubiquilin-1; UBA, alter 40.6 22 0.00076 24.0 3.0 23 296-318 12-35 (52)
40 2jy5_A Ubiquilin-1; UBA, alter 39.8 46 0.0016 22.4 4.5 27 186-212 10-37 (52)
41 3fz4_A Putative arsenate reduc 39.8 55 0.0019 26.1 5.8 22 91-112 78-99 (120)
42 3gkx_A Putative ARSC family re 39.5 67 0.0023 25.5 6.3 79 20-112 18-100 (120)
43 2d9s_A CBL E3 ubiquitin protei 39.0 27 0.00091 23.8 3.1 23 297-319 10-32 (53)
44 3dfg_A Xcrecx, regulatory prot 38.3 58 0.002 27.4 6.1 110 44-177 47-160 (162)
45 2ekk_A UBA domain from E3 ubiq 36.4 22 0.00075 23.3 2.4 23 298-320 11-33 (47)
46 3v6t_A DHAX3; tandem repeats, 36.0 1.9E+02 0.0064 28.4 9.6 251 81-350 54-311 (499)
47 3idw_A Actin cytoskeleton-regu 35.7 38 0.0013 24.6 3.6 53 82-137 4-58 (72)
48 2dak_A Ubiquitin carboxyl-term 35.2 30 0.001 24.3 3.1 40 297-343 10-49 (63)
49 1uxc_A FRUR (1-57), fructose r 35.1 52 0.0018 23.2 4.4 17 233-249 9-25 (65)
50 1veg_A NEDD8 ultimate buster-1 34.7 29 0.00099 26.1 3.0 41 297-344 30-70 (83)
51 1wiv_A UBP14, ubiquitin-specif 34.6 30 0.001 25.2 3.1 37 297-340 30-66 (73)
52 1vg5_A RSGI RUH-014, rhomboid 33.1 54 0.0019 23.9 4.3 39 187-233 28-66 (73)
53 1s3c_A Arsenate reductase; ARS 32.9 78 0.0027 26.0 5.8 20 92-111 76-95 (141)
54 1wji_A Tudor domain containing 32.5 72 0.0025 22.4 4.7 36 190-233 11-46 (63)
55 3l78_A Regulatory protein SPX; 31.0 1E+02 0.0035 24.3 6.1 20 92-111 74-93 (120)
56 3e3v_A Regulatory protein RECX 30.6 89 0.003 26.7 6.0 83 20-104 22-110 (177)
57 1wgn_A UBAP1, ubiquitin associ 29.2 53 0.0018 23.1 3.4 35 190-232 21-55 (63)
58 2bwb_A Ubiquitin-like protein 28.9 56 0.0019 21.4 3.4 18 294-311 5-22 (46)
59 1uxc_A FRUR (1-57), fructose r 28.4 63 0.0022 22.7 3.9 47 196-243 8-54 (65)
60 2iu1_A EIF5, eukaryotic transl 27.5 11 0.00037 33.7 -0.5 14 426-439 164-177 (208)
61 2dah_A Ubiquilin-3; UBA domain 27.3 97 0.0033 21.0 4.5 39 187-233 8-47 (54)
62 2jml_A DNA binding domain/tran 27.0 54 0.0018 23.9 3.5 24 298-321 54-78 (81)
63 1dv0_A DNA repair protein HHR2 26.6 25 0.00086 23.2 1.3 22 299-320 7-28 (47)
64 3dfg_A Xcrecx, regulatory prot 25.8 2.9E+02 0.0098 23.0 10.8 24 298-321 137-160 (162)
65 3f0i_A Arsenate reductase; str 25.3 97 0.0033 24.5 5.0 20 92-111 79-98 (119)
66 2dag_A Ubiquitin carboxyl-term 24.8 48 0.0017 24.1 2.7 40 298-343 11-50 (74)
67 1ayz_A UBC2, ubiquitin-conjuga 24.6 17 0.00057 31.3 0.2 15 382-396 128-142 (169)
68 1rw1_A Conserved hypothetical 24.5 96 0.0033 24.2 4.8 20 92-111 73-92 (114)
69 3d5l_A Regulatory protein RECX 24.4 89 0.003 27.8 5.0 112 44-176 91-206 (221)
70 2xzm_O RPS13E; ribosome, trans 24.3 1.7E+02 0.0058 24.4 6.2 72 30-103 12-96 (153)
71 1vej_A Riken cDNA 4931431F19; 23.6 1.1E+02 0.0036 22.4 4.3 41 185-233 26-67 (74)
72 1veg_A NEDD8 ultimate buster-1 23.3 1E+02 0.0034 23.1 4.2 37 189-233 30-66 (83)
73 1wr1_B Ubiquitin-like protein 23.1 66 0.0023 22.2 3.0 16 294-309 15-30 (58)
74 2cpw_A CBL-interacting protein 22.0 62 0.0021 22.8 2.8 37 298-340 21-57 (64)
75 2dkl_A Trinucleotide repeat co 21.8 1.2E+02 0.0041 22.7 4.5 43 189-239 22-64 (85)
76 3d5l_A Regulatory protein RECX 21.3 4.2E+02 0.014 23.2 10.6 25 295-319 180-205 (221)
77 3izc_W 60S ribosomal protein R 21.3 48 0.0016 26.7 2.2 49 385-433 65-121 (121)
78 3fze_A Protein STE5; alpha/bet 21.2 28 0.00095 30.2 0.9 9 422-430 187-195 (196)
79 2cp8_A NEXT to BRCA1 gene 1 pr 20.9 2E+02 0.0068 19.6 5.0 27 186-212 7-34 (54)
80 2kok_A Arsenate reductase; bru 20.9 1.1E+02 0.0039 24.0 4.6 22 91-112 77-98 (120)
81 2dai_A Ubadc1, ubiquitin assoc 20.8 73 0.0025 23.8 3.1 39 298-343 31-69 (83)
82 1whc_A RSGI RUH-027, UBA/UBX 3 20.7 68 0.0023 22.6 2.7 40 298-343 11-50 (64)
83 1wj7_A Hypothetical protein (R 20.1 68 0.0023 25.1 2.8 28 293-320 36-64 (104)
No 1
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=9.6e-52 Score=411.86 Aligned_cols=308 Identities=19% Similarity=0.277 Sum_probs=229.2
Q ss_pred hHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHH
Q 048759 81 IPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLV 160 (442)
Q Consensus 81 ~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~ 160 (442)
..+++||.++|++.++ ++..+|.++..+++ +..++++||+++|++.+++++++.++|.+|++++ +++.|+++||+
T Consensus 20 ~~~v~~L~s~Gl~~~~---~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~fL~ 94 (343)
T 3mva_O 20 EDLLKNLLTMGVDIDM---ARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDLWR 94 (343)
T ss_dssp CCHHHHHHHHTCCHHH---HHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHH---HHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHHHH
Confidence 4566666666666443 34456666655543 5566666666666666666666666666666664 35666666666
Q ss_pred HhCCCccccccccccCCce-eecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCC--
Q 048759 161 SIGVSPRDIGPMVTQYPYF-LGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIR-- 237 (442)
Q Consensus 161 ~lG~~~~~i~~li~~~P~l-L~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~-- 237 (442)
++|++++++.+++.++|++ ++.+.+++++|+++||+++|++.+++.+++.++|++|+.+++ ++++++++|+++|++
T Consensus 95 ~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e-~~~~~v~~L~~lgv~~g 173 (343)
T 3mva_O 95 KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLD-LNKQMVEFLQAAGLSLG 173 (343)
T ss_dssp TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHH-HhhHHHHHHHHhCCCcC
Confidence 6666666666666666663 333322366677777777777777777777777777777666 446677777665553
Q ss_pred ----hHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhc-ccccchhhhhHHHHHHHHH----hcCC
Q 048759 238 ----REKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKM-PQVVSLNQHVIMKSVEFLL----GRGI 308 (442)
Q Consensus 238 ----~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~-P~il~~s~~~l~~k~~fl~----~~G~ 308 (442)
.+.+.+++.++|.+++.+ +++++++++|+..++|++++++..++.+. |.++..+.+.++++++|+. ++||
T Consensus 174 ~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~ 252 (343)
T 3mva_O 174 HNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGC 252 (343)
T ss_dssp CSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTC
T ss_pred CCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCC
Confidence 455667777777777766 55677777777556777777777777764 4777888888888887776 6999
Q ss_pred ChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhhcCcccccccccccHHHHHHHHHcCCCcchh--hhhcC
Q 048759 309 PSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIRCSMN--WFLNC 386 (442)
Q Consensus 309 s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~~P~~L~~Slekri~pR~~~L~~~G~~~~l~--~~l~~ 386 (442)
+.+++..|+.++|++|++|.++|++|++||++ ||+++++|+++|++|+||+| ||+|||++|+++|+.+++. +++++
T Consensus 253 s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~ 330 (343)
T 3mva_O 253 TEEEVQKFVLSYPDVIFLAEKKFNDKIDCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSW 330 (343)
T ss_dssp CHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGS
T ss_pred CHHHHHHHHHhCCchhcccHHHHHHHHHHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcC
Confidence 99999999999999999999999999999998 99999999999999999999 9999999999999998877 99999
Q ss_pred ChhhHHHHHhh
Q 048759 387 SDQRFEERLLG 397 (442)
Q Consensus 387 sd~~F~~~~~~ 397 (442)
||++|+++|++
T Consensus 331 s~~~F~~~~~~ 341 (343)
T 3mva_O 331 SKKRYEAKLKK 341 (343)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 2
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=1.2e-45 Score=367.78 Aligned_cols=313 Identities=18% Similarity=0.292 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHCCCCccccc-cCCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHH
Q 048759 45 IEVMEERVMFLQKLGLTIDDIN-EYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFL 123 (442)
Q Consensus 45 ~~~~~~~l~~L~~lG~s~~~i~-~~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL 123 (442)
+..-.++++||.++|++.+++. ++|.++..+++ ++.++++||+++|++.+++++++.++|.+|.+++ +++.|+++||
T Consensus 16 ~~~~~~~v~~L~s~Gl~~~~~~~~~p~l~~~s~~-~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~-~~l~p~l~fL 93 (343)
T 3mva_O 16 PLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMIT-NEQDLKMFLLSKGASKEVIASIISRYPRAITRTP-ENLSKRWDLW 93 (343)
T ss_dssp ----CCHHHHHHHHTCCHHHHHHHCGGGGGCSCC-CHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCH-HHHHHHHHHH
T ss_pred ccccHHHHHHHHHcCCCHHHHHHhCchhhccCcc-cHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCH-HHHHHHHHHH
Confidence 3445678999999999999985 78999888775 7899999999999999999999999999999995 5899999999
Q ss_pred HhCCCCCChHHHHHhhcCc-ccccccchhHHHHHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHHhcCCC-
Q 048759 124 RGLDVEKEDIGYVLMKYPE-LLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLP- 201 (442)
Q Consensus 124 ~~lG~~~~~i~~il~~~P~-lL~~s~e~~l~~~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~- 201 (442)
+++|++++++++++.++|+ +++.+.++++.|+++||+++|++.++|++++.++|++++++.+++ ++++++|+++|++
T Consensus 94 ~~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~ 172 (343)
T 3mva_O 94 RKIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSL 172 (343)
T ss_dssp TTTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCc
Confidence 9999999999999999999 455544358999999999999999999999999999999999855 9999999977664
Q ss_pred -----hHHHHHHHHhcchhcccCcccchhhhHHHHHh-hcCChHHHHHHHHhCC-cccccChhhhhhhHHHHHHH---hc
Q 048759 202 -----IKILARMLEKRVYILGYDLEETVKPNVDCLIS-FGIRREKLASVIAQYP-QIIGLPLKAKMSSQLYFFNL---KL 271 (442)
Q Consensus 202 -----~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~-~G~~~~~i~~~i~~~P-~iL~~~~~~~l~~~~~~l~~---~l 271 (442)
.+.|.+++.++|++++++ +++++++++||++ +|++++++..++.+.| .+++.+.+ .+++++.++.+ ++
T Consensus 173 g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~-~l~~~~~~l~e~~~~l 250 (343)
T 3mva_O 173 GHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSND-YARRSYANIKEKLFSL 250 (343)
T ss_dssp TCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTT-HHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHH-HHHHHHHHHHHHHHHc
Confidence 678999999999999999 5699999999995 9999999999998865 77777754 78888877754 89
Q ss_pred CCChhHHHHHHHhcccccchhhhhHHHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhh
Q 048759 272 KIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIE 351 (442)
Q Consensus 272 G~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~ 351 (442)
||+++++..|+.++|.++.+|.+++++|++||.++|++.++| .++|++|+||+|+|+||++||. ..|+.... .
T Consensus 251 G~s~~ev~~~v~~~P~il~~s~~~l~~k~~fl~~mg~~~~~i----~~~P~~l~~sleri~~R~~~L~-~~g~~~~~--~ 323 (343)
T 3mva_O 251 GCTEEEVQKFVLSYPDVIFLAEKKFNDKIDCLMEENISISQI----IENPRVLDSSISTLKSRIKELV-NAGCNLST--L 323 (343)
T ss_dssp TCCHHHHHHHHHTCGGGGGSCHHHHHHHHHHHHTTTCCHHHH----HHSGGGGGSCHHHHHHHHHHHH-TTTCCSSS--S
T ss_pred CCCHHHHHHHHHhCCchhcccHHHHHHHHHHHHHcCCCHHHH----HhCCHHHhcCHHHHHHHHHHHH-HCCCCCCC--C
Confidence 999999999999999999999999999999999999999998 5999999999999999999998 78886531 1
Q ss_pred cCcccccccccccHHHHHH
Q 048759 352 FPEYFTYSLESRIKPRYQR 370 (442)
Q Consensus 352 ~P~~L~~Slekri~pR~~~ 370 (442)
+-.+|++| |+++.-|+..
T Consensus 324 ~~~~l~~s-~~~F~~~~~~ 341 (343)
T 3mva_O 324 NITLLSWS-KKRYEAKLKK 341 (343)
T ss_dssp CGGGGGSC-HHHHHHHHHH
T ss_pred cchhhcCC-HHHHHHHHhc
Confidence 22788887 6677777654
No 3
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=9.1e-44 Score=343.10 Aligned_cols=247 Identities=17% Similarity=0.312 Sum_probs=195.9
Q ss_pred HHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHH
Q 048759 117 MPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLV 196 (442)
Q Consensus 117 ~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~ 196 (442)
.++++||.++|++..++.+....+|.+|++++++++.|+++||+++|+++++|++++.++|.+|++++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 4677777777777777766666666667777777777777777777777777777777777777777775 777777777
Q ss_pred hcCCChHHHHHHHHhcchhcccCcccchhhhHHHHH-hhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCCh
Q 048759 197 SLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLI-SFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDP 275 (442)
Q Consensus 197 ~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~-~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~ 275 (442)
++|++++++.+++.++|++|+++++ ++++++++|+ ++|++.+++.
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~--------------------------------- 130 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTR--------------------------------- 130 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHH---------------------------------
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHH---------------------------------
Confidence 7777777777777777777777776 5666666663 4555555554
Q ss_pred hHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhhcCc
Q 048759 276 DEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPE 354 (442)
Q Consensus 276 ~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~~P~ 354 (442)
+++.++|.+++.|.++++++++++. ++||+.+++..|+.++|.+|++|.++|++|++||+++||+++++|+++|+
T Consensus 131 ----~ll~~~P~il~~s~e~~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i~~~P~ 206 (270)
T 3m66_A 131 ----DLVVRLPRLLTGSLEPVKENMKVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHIIVKFPQ 206 (270)
T ss_dssp ----HHHHHSGGGGTSCSHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHHHHCGG
T ss_pred ----HHHHhCCcceeechHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHHHhCch
Confidence 4555566666666666778899875 89999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccHHHHHHHHH---cCCC------cchhhhhcCChhhHHHHHhhcccc-cc
Q 048759 355 YFTYSLESRIKPRYQRLQS---KGIR------CSMNWFLNCSDQRFEERLLGNYIE-SE 403 (442)
Q Consensus 355 ~L~~Slekri~pR~~~L~~---~G~~------~~l~~~l~~sd~~F~~~~~~~~~e-~~ 403 (442)
+|+||+| ||+|||.+|+. +|+. +++.+++.+||++|+++|++.+.| |+
T Consensus 207 ~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~~~L~~~l~~sd~~F~~~~~~~~~eey~ 264 (270)
T 3m66_A 207 VFNTRLF-KVKERHLFLTYLGRAQYDPAKPNYISLDKLVSIPDEIFCEEIAKASVQDFE 264 (270)
T ss_dssp GGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSCCCHHHHHHSCHHHHHHHTTCSCHHHHH
T ss_pred HhhCCHH-HHHHHHHHHHHhhccCCCCCCCCCCCHHHHhcCCHHHHHHHHhcCCHHHHH
Confidence 9999999 99999988765 5552 678899999999999999986665 54
No 4
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=8.1e-37 Score=300.11 Aligned_cols=208 Identities=20% Similarity=0.330 Sum_probs=159.9
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHH
Q 048759 188 IKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFF 267 (442)
Q Consensus 188 l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l 267 (442)
+...+..|.++|+++.+|++++..+|+++.. ++.+.+.+|..+|++.+++.+||.++|.+|.++++ ++++++.||
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL 120 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHH
Confidence 4445555555555555555555555555432 34455555555566666666666666666655553 466666666
Q ss_pred HHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCCh
Q 048759 268 NLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPI 346 (442)
Q Consensus 268 ~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~ 346 (442)
+++|++.+++++++.++|++++++.+.+..++.+|. ++||+.++|..||.++|+||++|.++|++|++||+++||++.
T Consensus 121 -~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~ 199 (335)
T 4fp9_B 121 -QKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKH 199 (335)
T ss_dssp -HHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCH
T ss_pred -HHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCH
Confidence 446666666777777778888888888888999987 799999999999999999999999999999999999999999
Q ss_pred hhHhhcCcccccccccccHHHHHHHHHcCCC-------------cchhhhhcCChhhHHHHHhh-cccccc
Q 048759 347 KELIEFPEYFTYSLESRIKPRYQRLQSKGIR-------------CSMNWFLNCSDQRFEERLLG-NYIESE 403 (442)
Q Consensus 347 ~~v~~~P~~L~~Slekri~pR~~~L~~~G~~-------------~~l~~~l~~sd~~F~~~~~~-~~~e~~ 403 (442)
.+|++ |.+|+||++ ||+|||.||+..|.. ++|..++..||+.||.++++ +.++|+
T Consensus 200 ~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA~~s~eey~ 268 (335)
T 4fp9_B 200 PDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQ 268 (335)
T ss_dssp HHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTSCCCHHHHH
T ss_pred HHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHHhcCHHHHH
Confidence 99997 999999999 999999999999872 57999999999999999986 444464
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=2.7e-36 Score=290.86 Aligned_cols=243 Identities=20% Similarity=0.339 Sum_probs=210.5
Q ss_pred hHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHH
Q 048759 81 IPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLV 160 (442)
Q Consensus 81 ~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~ 160 (442)
.++++||.++|++.+++.+....+|.++++++++++.|+++||+++|++++++++++.++|.+|++++++ ++|+++||+
T Consensus 6 s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~~L~ 84 (270)
T 3m66_A 6 SETLQKLVLLGVDLSKIEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVAYLH 84 (270)
T ss_dssp HHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHHHHH
Confidence 6899999999999999988777778889999999999999999999999999999999999999999987 999999999
Q ss_pred HhCCCccccccccccCCceeecccccchHHHHHHH-HhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChH
Q 048759 161 SIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYL-VSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRRE 239 (442)
Q Consensus 161 ~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L-~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~ 239 (442)
++|++.++|++++.++|++|+++++ +++|+++|| .++|++.+++.+++.++|++++.+.+ ++++++
T Consensus 85 ~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e-~~~~~v----------- 151 (270)
T 3m66_A 85 SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLE-PVKENM----------- 151 (270)
T ss_dssp HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSH-HHHHHH-----------
T ss_pred HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechH-HHHHHH-----------
Confidence 9999999999999999999999998 699999999 58999999999999999999999986 444444
Q ss_pred HHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHh
Q 048759 240 KLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVV 318 (442)
Q Consensus 240 ~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~ 318 (442)
+++..++||+.+++..++.++|.++++|.+++++|++||. +||++.++| .
T Consensus 152 -------------------------~~l~~~~G~s~~ei~~~v~~~P~il~~s~~~l~~k~~fL~~~mg~~~~~i----~ 202 (270)
T 3m66_A 152 -------------------------KVYRLELGFKHNEIQHMITRIPKMLTANKMKLTETFDFVHNVMSIPHHII----V 202 (270)
T ss_dssp -------------------------HHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTSCCCHHHH----H
T ss_pred -------------------------HHHHHHcCCCHHHHHHHHHhCChhheecHHHHHHHHHHHHHHhCCCHHHH----H
Confidence 3444678888888888888899999999999999999997 699999998 5
Q ss_pred hcCcccccChhhhHhHHHHHHHH--hCCChhhHhhcCc---ccccccccccHHHH
Q 048759 319 QCPQLIACRVELMKNSFYFFKSE--MGRPIKELIEFPE---YFTYSLESRIKPRY 368 (442)
Q Consensus 319 ~~P~iL~~S~e~l~~r~~fL~~~--mg~~~~~v~~~P~---~L~~Slekri~pR~ 368 (442)
++|++|+||+|+|+||++|+..- .|+...+. .++. ++..| |+++.-|+
T Consensus 203 ~~P~~l~~Sleri~pR~~~l~~L~~~g~~~~~~-~~~~L~~~l~~s-d~~F~~~~ 255 (270)
T 3m66_A 203 KFPQVFNTRLFKVKERHLFLTYLGRAQYDPAKP-NYISLDKLVSIP-DEIFCEEI 255 (270)
T ss_dssp HCGGGGGSCHHHHHHHHHHHHHHTCCCCCTTSS-SCCCHHHHHHSC-HHHHHHHT
T ss_pred hCchHhhCCHHHHHHHHHHHHHhhccCCCCCCC-CCCCHHHHhcCC-HHHHHHHH
Confidence 99999999999999999999742 34443331 1233 55555 55555554
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=233.42 Aligned_cols=182 Identities=14% Similarity=0.271 Sum_probs=156.8
Q ss_pred HHHHHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHH
Q 048759 152 MSTSVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCL 231 (442)
Q Consensus 152 l~~~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L 231 (442)
+...+..|.++|+++.+|++++..+|.++.. ++.+++.||..+|++.++|.++|+++|++|+++++ +|+++++||
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~----~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~l~fL 120 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGASLQ----QLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL 120 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH----HHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccchh----HHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH-HHHHHHHHH
Confidence 5666677778888888888888888887633 46678888888888888888888888888888886 788888888
Q ss_pred HhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCCh
Q 048759 232 ISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPS 310 (442)
Q Consensus 232 ~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~ 310 (442)
+++|++.+++.+++.++|++|+++.+ ++..++.+|..++||+.+++..|+.++|.+|.+|.++|+.|++||. +||++.
T Consensus 121 ~~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~ 199 (335)
T 4fp9_B 121 QKLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKH 199 (335)
T ss_dssp HHTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCH
T ss_pred HHcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCH
Confidence 88888888888888888888888876 5777888887899999999999999999999999999999999999 799999
Q ss_pred hHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCC
Q 048759 311 GDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRP 345 (442)
Q Consensus 311 ~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~ 345 (442)
++|+ + |.+|+||+++|++|+.||. .+|..
T Consensus 200 ~eIv----k-P~~l~ySLeRIkpRH~fL~-~lG~~ 228 (335)
T 4fp9_B 200 PDIV----K-SEYLQYSLTKIKQRHIYLE-RLGRY 228 (335)
T ss_dssp HHHH----H-TTGGGSCHHHHHHHHHHHH-HHTSC
T ss_pred HHcc----c-cchhhccHHHHHHHHHHHH-HcCCc
Confidence 9985 4 9999999999999999998 68873
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.29 E-value=4.4e-11 Score=100.41 Aligned_cols=161 Identities=22% Similarity=0.387 Sum_probs=124.2
Q ss_pred hcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhH
Q 048759 234 FGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGD 312 (442)
Q Consensus 234 ~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~ 312 (442)
+|+.++-++-++.+.|+++-+.+- .++.+-.++ ..+|+.+..+.+++--+|.|+.+....+...+..+. ++=|+.++
T Consensus 43 lglnpepvcvvlkkspqllklpim-qmrkrssyl-qklglgegklkrvlyccpeiftmrqqdindtvrllkekclftvqq 120 (239)
T 4fzv_B 43 LGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYL-QKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQ 120 (239)
T ss_dssp HCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHH-HHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHHHHHHSCCCHHH
T ss_pred hcCCCCceEEEecCCHHHhcChHH-HHHHHHHHH-HHhCCCccchhhheecCcHHHHHHHhhHhHHHHHHHHhHHhhHHH
Confidence 455555555555555555554432 233333444 456666666666666677777777777778888888 58899999
Q ss_pred HHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHhhcCcccccccccccHHHHHHHHHcCCC-------------cc
Q 048759 313 LAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELIEFPEYFTYSLESRIKPRYQRLQSKGIR-------------CS 379 (442)
Q Consensus 313 i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~~~P~~L~~Slekri~pR~~~L~~~G~~-------------~~ 379 (442)
+..++..||.+|.-.+..+.-|+.|-.-.||+...++++. .||.||+. .|+.||-+|.+.|.. +-
T Consensus 121 vtkilhscpsvlredlgqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtpdkkgqtqipnpl 198 (239)
T 4fzv_B 121 VTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPL 198 (239)
T ss_dssp HHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCCCSSSCCSSCCCC
T ss_pred HHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCCCccCCccCCChH
Confidence 9999999999999999999999999888999999999975 89999998 799999999887742 44
Q ss_pred hhhhhcCChhhHHHHHhhc
Q 048759 380 MNWFLNCSDQRFEERLLGN 398 (442)
Q Consensus 380 l~~~l~~sd~~F~~~~~~~ 398 (442)
+..++..|+..|.++-+.+
T Consensus 199 lkdilrvseaeflartact 217 (239)
T 4fzv_B 199 LKDILRVSEAEFLARTACT 217 (239)
T ss_dssp HHHHHTSCHHHHHHHTSCS
T ss_pred HHHHHHHhHHHHHHHHhcc
Confidence 7889999999999998764
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.62 E-value=8.7e-07 Score=74.43 Aligned_cols=140 Identities=16% Similarity=0.301 Sum_probs=95.1
Q ss_pred hcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChh
Q 048759 197 SLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPD 276 (442)
Q Consensus 197 ~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~ 276 (442)
-+|+.++-+.-++.+.|+++...+. .++.+-.||+.+|+....+.+++--||.+++....+ +...+..+.+..-|+-+
T Consensus 42 llglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqd-indtvrllkekclftvq 119 (239)
T 4fzv_B 42 LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQD-INDTVRLLKEKCLFTVQ 119 (239)
T ss_dssp HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHH-HHHHHHHHHHHSCCCHH
T ss_pred hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhh-HhHHHHHHHHhHHhhHH
Confidence 3466665555566666666665554 555566666666666666666666666666655442 44555555556666666
Q ss_pred HHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCC
Q 048759 277 EFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGR 344 (442)
Q Consensus 277 ~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~ 344 (442)
++-++++.+|.++.-+...++-|+.|-- .||+...+|. ....|.||+.+|+.|.-||. .+|.
T Consensus 120 qvtkilhscpsvlredlgqleykfqyayfrmgikhpdiv-----kseylqysltkikqrhiyle-rlgr 182 (239)
T 4fzv_B 120 QVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIV-----KSEYLQYSLTKIKQRHIYLE-RLGR 182 (239)
T ss_dssp HHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHH-----HTTGGGSCHHHHHHHHHHHH-HHTC
T ss_pred HHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchh-----HHHHHHHHHHHHHHHHhHHH-Hhcc
Confidence 6777777777777666667778887766 7999999983 45789999999999999997 6765
No 9
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=92.85 E-value=0.066 Score=55.80 Aligned_cols=145 Identities=10% Similarity=0.114 Sum_probs=62.4
Q ss_pred HcCCChhhHHHHHHhCCccccccccccHHHHHHHHH-hCCCCCChHHHHHhhcCcccccccchhHHHHHHHHH-HhCCCc
Q 048759 89 KIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLR-GLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLV-SIGVSP 166 (442)
Q Consensus 89 ~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~-~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~-~lG~~~ 166 (442)
+.||+++++.+|-+..-.--. -+.+...+--|. ..|++.++|.+|-...---... +++......+. ..|++.
T Consensus 421 ~~glt~~qvv~IAsn~GGkQA---Le~V~~llp~L~~~~glt~aqvVaIAsn~GGkQAL---eaV~~llpvl~~~~gls~ 494 (1047)
T 3ugm_A 421 AHGLTPDQVVAIASHDGGKQA---LETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQAL---ETVQQLLPVLCQAHGLTP 494 (1047)
T ss_dssp TSSCCHHHHHHHHSSTTTHHH---HHHHHHHHHHHHTTSCCCHHHHHHHSSSTTHHHHH---HHHHHHHHHHHHHSCCCS
T ss_pred hcCCCHHHhhhhhccCchHHH---HHHHHHHhHHhhcccCCCHHHHHHHHhcCcHHHHH---HHHHHHHHHHHHhcCCCH
Confidence 456666666655443211100 012222222333 4677777776665443322211 11222223233 358888
Q ss_pred cccccccccCCceeecccccchHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh-hcCChHHHHHH
Q 048759 167 RDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS-FGIRREKLASV 244 (442)
Q Consensus 167 ~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~-~G~~~~~i~~~ 244 (442)
++|.+|..++-.-=....-..+.|.+. +..|++++++.++-.....-- -++ .+..-.-.|+. .|++.+++..|
T Consensus 495 ~qvvaiA~n~GGkQALeaV~~l~p~l~--~~~gls~~qVVaIAsN~GGkQ--ALe-aV~~~lp~Lr~a~~ls~~qVVaI 568 (1047)
T 3ugm_A 495 DQVVAIASNIGGKQALATVQRLLPVLC--QAHGLTPDQVVAIASNGGGKQ--ALE-TVQRLLPVLCQAHGLTPDQVVAI 568 (1047)
T ss_dssp HHHHHHHSSTTHHHHHHHHHHHSGGGT--TTTCCCSHHHHHHHSSTTCHH--HHH-HHHHHHHHHTTTSCCTHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHhhhhhc--cccCCCHHHhhhhhcCCcHHH--HHH-HHHHHhHHHHHHhCCCHHHeeee
Confidence 887777654321000000001111111 256777777666544332100 112 33344444553 67777776554
No 10
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=90.30 E-value=1.5 Score=42.39 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=53.8
Q ss_pred HHhCCCCCccccCCCCCccHHHHHHHHHHHHHCCCCccccc---cCCccccccccccchHHHHHHHHcCCChhhHHHHHH
Q 048759 26 LKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDIN---EYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVK 102 (442)
Q Consensus 26 L~~~Gi~~~~i~~~~~~~~~~~~~~~l~~L~~lG~s~~~i~---~~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~ 102 (442)
|..+|-+...+.++. +.+.+.+..-=+-|-..||++++|- ++|.-|.. +..+....+.-| .+++.++|..+-+
T Consensus 8 l~~lgys~~q~~k~k-~~~~s~va~~h~~l~~~g~t~~~i~~is~~~~al~~-va~~y~~l~aal--~~lt~~~iV~ia~ 83 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIK-PKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGT-VAVKYQDMIAAL--PEATHEAIVGVGK 83 (463)
T ss_dssp GGGGTCCHHHHHHHC-GGGHHHHHHHHHHHHHTTCCHHHHHHHTTSTHHHHH-HHTTHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHhccCHHHHHHhh-HHHHHHHHHHHHHHHhcCCCHHHHHHhhccHhHHHH-HHHhhHHHHhhc--cccCHHHHHHHHh
Confidence 445677766666643 3344444455566778999999873 55553331 111222222222 4566666665554
Q ss_pred hCCccccccccccHHHHHHHHHh--CCCCCChHHHHHh
Q 048759 103 KYPQVLHASVVVELMPVVKFLRG--LDVEKEDIGYVLM 138 (442)
Q Consensus 103 ~~P~lL~~~~~~~l~~~v~fL~~--lG~~~~~i~~il~ 138 (442)
.+-..... ..+.+...-|.. ++++.+++..|..
T Consensus 84 ~~~g~~Al---~a~~~~~~~L~~~p~~l~~~qiv~IA~ 118 (463)
T 4hpz_A 84 QWSGACAL---EALLTVAGELRGPPLQLDTGQLLKIAK 118 (463)
T ss_dssp STTTTHHH---HHHHHHHHHHHSTTTCCCHHHHHHHHH
T ss_pred ccchHHHH---HHHHHHHHHhhcCccCCCHHHHHHHHh
Confidence 44332221 123444444443 4666666665554
No 11
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=89.08 E-value=3.7 Score=43.10 Aligned_cols=81 Identities=7% Similarity=0.169 Sum_probs=38.6
Q ss_pred hhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH-hcCCChh
Q 048759 233 SFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL-GRGIPSG 311 (442)
Q Consensus 233 ~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~-~~G~s~~ 311 (442)
+.||++.++..|-.+.-.-=.+ +.+......|....|++++++..|-...-. ..--+....-...+. ..||+.+
T Consensus 421 ~~glt~~qvv~IAsn~GGkQAL---e~V~~llp~L~~~~glt~aqvVaIAsn~GG--kQALeaV~~llpvl~~~~gls~~ 495 (1047)
T 3ugm_A 421 AHGLTPDQVVAIASHDGGKQAL---ETVQRLLPVLCQTHGLTPAQVVAIASHDGG--KQALETVQQLLPVLCQAHGLTPD 495 (1047)
T ss_dssp TSSCCHHHHHHHHSSTTTHHHH---HHHHHHHHHHHTTSCCCHHHHHHHSSSTTH--HHHHHHHHHHHHHHHHHSCCCSH
T ss_pred hcCCCHHHhhhhhccCchHHHH---HHHHHHhHHhhcccCCCHHHHHHHHhcCcH--HHHHHHHHHHHHHHHHhcCCCHH
Confidence 3677777776654433322111 123333333444567777776654211100 001122222233344 3788888
Q ss_pred HHHHHHh
Q 048759 312 DLAKMVV 318 (442)
Q Consensus 312 ~i~~~v~ 318 (442)
+|..|..
T Consensus 496 qvvaiA~ 502 (1047)
T 3ugm_A 496 QVVAIAS 502 (1047)
T ss_dssp HHHHHHS
T ss_pred HHHHHHh
Confidence 8887774
No 12
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=85.01 E-value=9.4 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHH
Q 048759 189 KPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLI 232 (442)
Q Consensus 189 ~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~ 232 (442)
+..+..|.++|++...+.+.+..+. - ..+..++||-
T Consensus 9 ~~~v~~l~~MGFp~~~~~kAl~~~g----~----~~e~amewL~ 44 (118)
T 4ae4_A 9 RQCVETVVNMGYSYECVLRAMKAAG----A----NIEQILDYLF 44 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHC----S----CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHC----c----CHHHHHHHHH
Confidence 3467778889999988888887663 1 3446666764
No 13
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=84.45 E-value=0.34 Score=47.62 Aligned_cols=37 Identities=8% Similarity=0.142 Sum_probs=27.0
Q ss_pred chHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHH
Q 048759 80 MIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLR 124 (442)
Q Consensus 80 l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~ 124 (442)
....++.|.++||++.++.+.+...- +++..-++||-
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~~--------nn~~~A~e~L~ 204 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLL 204 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHSC--------SSTTHHHHTTT
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence 45678999999999999988887531 34556667774
No 14
>4hpz_A Dtale2; DNA binding protein, N-terminal domain; 2.20A {Xanthomonas}
Probab=84.38 E-value=4.6 Score=39.11 Aligned_cols=108 Identities=15% Similarity=0.198 Sum_probs=64.5
Q ss_pred HHHCCCCcccccc-CCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChH
Q 048759 55 LQKLGLTIDDINE-YPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDI 133 (442)
Q Consensus 55 L~~lG~s~~~i~~-~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i 133 (442)
|..+|+|.+++.+ .|..+. ++..--+-|...||+..+|.. ++++|.-|.. +..+....+.-| -+++.++|
T Consensus 8 l~~lgys~~q~~k~k~~~~s-----~va~~h~~l~~~g~t~~~i~~-is~~~~al~~-va~~y~~l~aal--~~lt~~~i 78 (463)
T 4hpz_A 8 LRTLGYSQQQQEKIKPKVRS-----TVAQHHEALVGHGFTHAHIVA-LSQHPAALGT-VAVKYQDMIAAL--PEATHEAI 78 (463)
T ss_dssp GGGGTCCHHHHHHHCGGGHH-----HHHHHHHHHHHTTCCHHHHHH-HTTSTHHHHH-HHTTHHHHHHHS--TTCCHHHH
T ss_pred HHHhccCHHHHHHhhHHHHH-----HHHHHHHHHHhcCCCHHHHHH-hhccHhHHHH-HHHhhHHHHhhc--cccCHHHH
Confidence 4578999999863 343332 334455667789999999986 4566664421 112233333333 57788888
Q ss_pred HHHHhhcCcccccccchhHHHHHHHHHH--hCCCccccccccc
Q 048759 134 GYVLMKYPELLGFKLEGTMSTSVAYLVS--IGVSPRDIGPMVT 174 (442)
Q Consensus 134 ~~il~~~P~lL~~s~e~~l~~~v~~L~~--lG~~~~~i~~li~ 174 (442)
..+-..+-...... .+.+...-|.. ++++..+|.+|-.
T Consensus 79 V~ia~~~~g~~Al~---a~~~~~~~L~~~p~~l~~~qiv~IA~ 118 (463)
T 4hpz_A 79 VGVGKQWSGACALE---ALLTVAGELRGPPLQLDTGQLLKIAK 118 (463)
T ss_dssp HHHHTSTTTTHHHH---HHHHHHHHHHSTTTCCCHHHHHHHHH
T ss_pred HHHHhccchHHHHH---HHHHHHHHhhcCccCCCHHHHHHHHh
Confidence 88877766555432 24444444443 3777777766654
No 15
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=83.95 E-value=13 Score=30.09 Aligned_cols=88 Identities=10% Similarity=0.118 Sum_probs=55.6
Q ss_pred hhHHHHHhhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHH-----HhcCCChhHHHHHHHhcccccchhhhhHHHHH
Q 048759 226 PNVDCLISFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFN-----LKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSV 300 (442)
Q Consensus 226 ~~v~~L~~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~-----~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~ 300 (442)
..+..|.++||+...+.+.+...-. ..+.-++|+. .+.|++...+-..+..+..--.- ...-...+
T Consensus 10 ~~v~~l~~MGFp~~~~~kAl~~~g~--------~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~-~~~~~~~v 80 (118)
T 4ae4_A 10 QCVETVVNMGYSYECVLRAMKAAGA--------NIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEK-MMEFLQLM 80 (118)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHCS--------CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHH-HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHCc--------CHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccc-cccCHHHH
Confidence 5677788899999998887765322 2344445543 24577776665555432210000 11123568
Q ss_pred HHHHhcCCChhHHHHHHhhcCc
Q 048759 301 EFLLGRGIPSGDLAKMVVQCPQ 322 (442)
Q Consensus 301 ~fl~~~G~s~~~i~~~v~~~P~ 322 (442)
.-|.+|||+.+.+..+++.+-+
T Consensus 81 ~~L~eMGF~~~~a~~AL~~~~n 102 (118)
T 4ae4_A 81 SKFKEMGFELKDIKEVLLLHNN 102 (118)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHHHHcCC
Confidence 8889999999999988887654
No 16
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=81.26 E-value=1.6 Score=30.08 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=23.3
Q ss_pred HHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhh
Q 048759 101 VKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMK 139 (442)
Q Consensus 101 v~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~ 139 (442)
+..+|.+-..+ +..+++||++-|++.++|...+.+
T Consensus 19 FL~dp~V~~sp----~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 19 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHCTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhcCC----HHHHHHHHHHcCCCHHHHHHHHHc
Confidence 44566665443 456778888888887777766654
No 17
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=79.39 E-value=3.8 Score=40.09 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=17.7
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHhc
Q 048759 188 IKPLVDYLVSLGLPIKILARMLEKR 212 (442)
Q Consensus 188 l~p~v~~L~~lG~~~~~i~~~l~~~ 212 (442)
....|..|.+||++++.+.+.|+..
T Consensus 168 ~~~~i~~l~~MGf~~~~~~~AL~a~ 192 (368)
T 1oqy_A 168 YETMLTEIMSMGYERERVVAALRAS 192 (368)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4556777777777777777777654
No 18
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=70.55 E-value=4.5 Score=27.86 Aligned_cols=33 Identities=15% Similarity=0.213 Sum_probs=24.7
Q ss_pred cccccchhhhhHHHHHHHHHhcCCChhHHHHHHhhc
Q 048759 285 MPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 285 ~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~v~~~ 320 (442)
.|.+-.. .+..|++||.+=|++.+||-.++.++
T Consensus 22 dp~V~~s---p~~~K~~FL~sKGLt~~EI~~Al~rs 54 (54)
T 3ff5_A 22 NSRVRQS---PLATRRAFLKKKGLTDEEIDLAFQQS 54 (54)
T ss_dssp CTTGGGS---CHHHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred ChhhhcC---CHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 4554443 35688999998899999998888763
No 19
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=70.15 E-value=4.1 Score=29.58 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhh
Q 048759 101 VKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMK 139 (442)
Q Consensus 101 v~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~ 139 (442)
+..+|.+-... +..+++||++-|++.++|...+.+
T Consensus 24 FLqdp~V~~sp----~~~K~~FL~sKGLt~eEI~~Al~r 58 (70)
T 2w84_A 24 FLQNSRVRQSP----LATRRAFLKKKGLTDEEIDMAFQQ 58 (70)
T ss_dssp HHCSTTGGGSC----HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HhCChhhhhCC----HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34556665443 456777777777777777766655
No 20
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=58.34 E-value=11 Score=25.27 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=18.7
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhhc
Q 048759 296 IMKSVEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 296 l~~k~~fl~~~G~s~~~i~~~v~~~ 320 (442)
...+++-|.+|||+.+++..+++.+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~ 32 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRAS 32 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3466777888888888888777654
No 21
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=55.18 E-value=12 Score=27.22 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=25.5
Q ss_pred cccccchhhhhHHHHHHHHHhcCCChhHHHHHHhhc
Q 048759 285 MPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 285 ~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~v~~~ 320 (442)
.|.+-.. -+.+|+.||.+=|++.+||-.++.+.
T Consensus 27 dp~V~~s---p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 27 NSRVRQS---PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp STTGGGS---CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ChhhhhC---CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 4554433 35689999998899999999888874
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=54.56 E-value=10 Score=24.38 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCChhHHHHHHhhc
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~ 320 (442)
.+++-|.+|||+.+++.+++..+
T Consensus 6 ~~i~~L~~MGF~~~~a~~AL~~~ 28 (43)
T 2g3q_A 6 LAVEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 45777888899888887776654
No 23
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=54.35 E-value=71 Score=31.28 Aligned_cols=271 Identities=11% Similarity=0.126 Sum_probs=132.2
Q ss_pred CCCCccccccCCcccccccc-ccchHHHHH---HHH-cCCChhhHHHHHHhCCccccccccccHHHHHHHHHh-CCCCCC
Q 048759 58 LGLTIDDINEYPLMLGCSMR-KNMIPVFSY---LEK-IGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRG-LDVEKE 131 (442)
Q Consensus 58 lG~s~~~i~~~P~ll~~~~~-~~l~~~l~~---L~~-lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~-lG~~~~ 131 (442)
+++|++++-+ |-..+.. .-+..+.++ |.. +|++++++..|-+..-.- ..-+.+.....-|.. .|++.+
T Consensus 65 l~ls~~qvva---IA~n~GGkqAleaV~~l~p~L~~a~gLs~~qVVaIAsn~GGk---qALe~V~~~lpvL~~~~~Ls~~ 138 (499)
T 3v6t_A 65 LNLTPEQVVA---IASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK---QALETVQRLLPVLCQAHGLTPE 138 (499)
T ss_dssp TCCCHHHHHH---HHSSTTHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHH---HHHHHHHHHHHHHHHTSCCCHH
T ss_pred cCCCHHHHHH---HHhcCCcHHHHHHHHHHHHHHHHhcCCCHHHhhhhhhcCccH---HHHHHHHHhhHHhhhhcCCCHH
Confidence 7888888631 1111111 122333333 343 889999988765432110 000133444445554 899999
Q ss_pred hHHHHHhhcCcccccccchhHHHHHHHHHH-hCCCccccccccccCCceeecccccchHHHHHHHHh-cCCChHHHHHHH
Q 048759 132 DIGYVLMKYPELLGFKLEGTMSTSVAYLVS-IGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVS-LGLPIKILARML 209 (442)
Q Consensus 132 ~i~~il~~~P~lL~~s~e~~l~~~v~~L~~-lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~-lG~~~~~i~~~l 209 (442)
++..|-+.+--==. + +.+....--|+. .|++.++|.+|-.+.-.- .-. +.++.-.-.|.+ .|++++.+..+-
T Consensus 139 qVVaIAsn~GGkQA--L-eaV~~llpvL~~a~gls~~qVvaIAsN~GGk--QAL-eaV~~llpvl~~~~gls~~qVVaiA 212 (499)
T 3v6t_A 139 QVVAIASHDGGKQA--L-ETVQALLPVLCQAHGLTPEQVVAIASNGGGK--QAL-ETVQRLLPVLCQAHGLTPQQVVAIA 212 (499)
T ss_dssp HHHHHHSSTTHHHH--H-HHHHHHHHHHHHTSCCCHHHHHHHHSSTTHH--HHH-HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HhHHHhhcCCcHHH--H-HHHHHhhHHHHHhcCCCHHHHHHHhcccchH--HHH-HHHHHhhhhHHhhccCCHHHHHHHh
Confidence 98887653221100 1 234444444543 688888888876532110 000 122222333433 788888777654
Q ss_pred HhcchhcccCcccchhhhHHHHHh-hcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccc
Q 048759 210 EKRVYILGYDLEETVKPNVDCLIS-FGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQV 288 (442)
Q Consensus 210 ~~~P~il~~s~e~~l~~~v~~L~~-~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~i 288 (442)
.....-- -++ .+..-.-.|.+ .|++..++..|-.+.-.-=.+ +.+....-.+....|++.+++..+-...-.
T Consensus 213 sn~GGkQ--ALe-aV~~llp~L~~a~~ls~~qVvaIAsN~GGkQAL---eaV~~~lpvl~~~~~lt~aqVVaIAsn~GG- 285 (499)
T 3v6t_A 213 SNGGGKQ--ALE-TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQAL---ETVQRLLPVLCQAHGLTPQQVVAIASNSGG- 285 (499)
T ss_dssp SSTTHHH--HHH-HHHHHHHHHTTTSCCCHHHHHHHHHSSCHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHSSTTH-
T ss_pred hccchHH--HHH-HHHHhhhHHHhhcCCCHHHhhhhhcccchHHHH---HHHHHhcccccccccCCHHHeeeeccCCcc-
Confidence 4331100 112 44445555555 589998887765543321111 123333333434578999888765211000
Q ss_pred cchhhhhHHHHHHHHH-hcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHh
Q 048759 289 VSLNQHVIMKSVEFLL-GRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELI 350 (442)
Q Consensus 289 l~~s~~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~ 350 (442)
..--+.+..-.-.|+ ..|++.++|..|-...--- .-+|.++.-.--|....|++.++|+
T Consensus 286 -kQALeaV~~llpvL~~~~~L~~~qVvaIAsN~GGk--QALeaV~~l~p~L~~a~gls~~qVV 345 (499)
T 3v6t_A 286 -KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK--QALETVQRLLPVLCQAHGLTPQQVV 345 (499)
T ss_dssp -HHHHHHHHHHHHHHHTTTCSCHHHHHHHHTSTTHH--HHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred -HHHHHHHHHhhHHHHHhcCCCHHHHHHHhhCCchH--HHHHHHHHHhHHHHHhcCCCHHHHH
Confidence 001233444455666 4799999997665422100 0122233333333433566666543
No 24
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=53.19 E-value=13 Score=25.33 Aligned_cols=25 Identities=12% Similarity=0.240 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHhh
Q 048759 295 VIMKSVEFLLGRGIPSGDLAKMVVQ 319 (442)
Q Consensus 295 ~l~~k~~fl~~~G~s~~~i~~~v~~ 319 (442)
.....|+-|.++||+.+++.+++..
T Consensus 10 ~~~~~Ia~Lm~mGFsr~~ai~AL~~ 34 (52)
T 2ooa_A 10 NVDAKIAKLMGEGYAFEEVKRALEI 34 (52)
T ss_dssp -CHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3345677777777777777666543
No 25
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=50.64 E-value=18 Score=24.75 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=31.5
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCCh
Q 048759 188 IKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRR 238 (442)
Q Consensus 188 l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~ 238 (442)
.+..++-|.++|++++.+...|+..- .+.+++.++||.+++++.
T Consensus 9 n~qmlq~L~eMGFd~erae~Alk~Tg-------~~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 9 NRQMLQELVNAGCDQEMAGRALKQTG-------SRSIEAALEYISKMSGPS 52 (54)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHHHHHT-------SCCHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhC-------cccHHHHHHHHHHhcCCC
Confidence 34557788889999887777776542 136888999998877653
No 26
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=50.49 E-value=24 Score=23.96 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=25.9
Q ss_pred cchHHHHHHHHhcCC-ChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 186 TMIKPLVDYLVSLGL-PIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 186 ~~l~p~v~~L~~lG~-~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
......+.-|.++|+ +++...++|..+- .++...++||-+
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~--------gnve~Ave~L~~ 49 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALIATG--------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHT--------SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 345667888888888 6666666666442 245566777654
No 27
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=49.84 E-value=5.5 Score=25.87 Aligned_cols=15 Identities=40% Similarity=0.962 Sum_probs=10.7
Q ss_pred ccCCccceeeecccC
Q 048759 427 EDESDDEVLYKRTVS 441 (442)
Q Consensus 427 ~~~~~~~~~~~~~~~ 441 (442)
+||+|+||.+|..++
T Consensus 29 dDd~D~EIvfK~P~~ 43 (44)
T 2aff_B 29 DDDKDDEIVFKQPIS 43 (44)
T ss_dssp GGGGSCSEEESSCC-
T ss_pred CCCccceEEeecCCC
Confidence 567788999887554
No 28
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=49.09 E-value=56 Score=26.04 Aligned_cols=79 Identities=18% Similarity=0.372 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCCccccCCCCCccHHHHHHHHHHHHHCCC-CccccccCCccccccccccchHHHHHHH--HcCCChhh
Q 048759 20 VKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGL-TIDDINEYPLMLGCSMRKNMIPVFSYLE--KIGIAKSK 96 (442)
Q Consensus 20 ~~~~~~L~~~Gi~~~~i~~~~~~~~~~~~~~~l~~L~~lG~-s~~~i~~~P~ll~~~~~~~l~~~l~~L~--~lG~s~~~ 96 (442)
.+...||+..|++...+.-...+.+.+.+ .+++..+|. +..++- ..+ .+...-|. .-.++.++
T Consensus 19 ~ka~~~L~~~gi~~~~~di~~~~~~~~eL---~~~l~~~g~~~~~~l~------n~~-----~~~~k~l~l~~~~ls~~~ 84 (121)
T 3rdw_A 19 RETLALVEQQGITPQVVLYLETPPSVDKL---KELLQQLGFSDARQLM------RTK-----EDLYKTLNLDDRGLTQDQ 84 (121)
T ss_dssp HHHHHHHHTTTCCCEEECTTTSCCCHHHH---HHHHHHTTCSSGGGGB------CTT-----SHHHHHTTTTCTTCCHHH
T ss_pred HHHHHHHHHcCCCcEEEeeccCCCcHHHH---HHHHHhcCCcCHHHHh------cCC-----ChhhhhcCcccccCCHHH
Confidence 34667777777765532222223333333 455666666 444331 100 00111110 11345666
Q ss_pred HHHHHHhCCccccccc
Q 048759 97 LGEFVKKYPQVLHASV 112 (442)
Q Consensus 97 i~~lv~~~P~lL~~~~ 112 (442)
+..++..+|.++-+.+
T Consensus 85 ~~~lm~~~p~LikRPI 100 (121)
T 3rdw_A 85 LLQAMADNPKLIERPI 100 (121)
T ss_dssp HHHHHHHCGGGBCCCE
T ss_pred HHHHHHhCccceeCCE
Confidence 6666777777665553
No 29
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=48.88 E-value=17 Score=24.63 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHhcCC-ChhHHHHHHh
Q 048759 294 HVIMKSVEFLLGRGI-PSGDLAKMVV 318 (442)
Q Consensus 294 ~~l~~k~~fl~~~G~-s~~~i~~~v~ 318 (442)
+..+.+++-|.+||| +.+.+.+++.
T Consensus 9 ~~~~~~l~~L~~MGF~~~~~~~~AL~ 34 (53)
T 2knz_A 9 VRFQQQLEQLNSMGFINREANLQALI 34 (53)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 344566667777777 5555544444
No 30
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=48.82 E-value=16 Score=24.05 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhh
Q 048759 296 IMKSVEFLLGRGIPSGDLAKMVVQ 319 (442)
Q Consensus 296 l~~k~~fl~~~G~s~~~i~~~v~~ 319 (442)
+...+.-|.++||+.+++.+++..
T Consensus 4 ~e~~I~~L~s~Gf~~~~~~rAL~i 27 (46)
T 2oo9_A 4 LSSEIENLMSQGYSYQDIQKALVI 27 (46)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456788889999999998876643
No 31
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=48.77 E-value=18 Score=22.53 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCChhHHHHHHhhc
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~ 320 (442)
.+++-|.+|||+.++..+++..+
T Consensus 6 ~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 6 SKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 45677778888888876665544
No 32
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=44.84 E-value=17 Score=26.69 Aligned_cols=37 Identities=5% Similarity=0.098 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHH
Q 048759 296 IMKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFK 339 (442)
Q Consensus 296 l~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~ 339 (442)
.+.+++-|.+|||+.+++..+++.+= .++..-++||.
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~-------~nve~Ave~Ll 65 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD-------DDLTVAVEILM 65 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT-------SCHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHH
Confidence 45678888899999999888777542 14445566665
No 33
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.40 E-value=21 Score=25.23 Aligned_cols=36 Identities=6% Similarity=0.158 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHH
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKS 340 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~ 340 (442)
.+++-|.+|||+.+++.+++..+=. ++..-++||..
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~~-------nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNGN-------NLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTTS-------CHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHH
Confidence 5677888999999998877766521 45566777764
No 34
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=43.05 E-value=26 Score=24.00 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhh
Q 048759 296 IMKSVEFLLGRGIPSGDLAKMVVQ 319 (442)
Q Consensus 296 l~~k~~fl~~~G~s~~~i~~~v~~ 319 (442)
.+..+.-|.+|||+.+++.+++..
T Consensus 7 ~e~~Ia~L~smGfsr~da~~AL~i 30 (56)
T 2juj_A 7 LSSEIENLMSQGYSYQDIQKALVI 30 (56)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHcCCCHHHHHHHHHH
Confidence 346788889999999999876643
No 35
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=42.98 E-value=1.3e+02 Score=25.59 Aligned_cols=136 Identities=11% Similarity=0.097 Sum_probs=73.0
Q ss_pred HHHHHHHhCCCccccccccccCCceeecccccchHHHHHHHHhcCCChHH-HHHHHHhcchhc-ccCcccchhhhHHHHH
Q 048759 155 SVAYLVSIGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVSLGLPIKI-LARMLEKRVYIL-GYDLEETVKPNVDCLI 232 (442)
Q Consensus 155 ~v~~L~~lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~~lG~~~~~-i~~~l~~~P~il-~~s~e~~l~~~v~~L~ 232 (442)
.+.+|..-.-|..++.+-+.+. +++.+ .+...+++|.+.|+-.+. ......+.-.-. ..+.. . ...-|+
T Consensus 24 Al~~Ls~r~~S~~EL~~KL~~k----g~~~~-~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G~~-~---I~~eL~ 94 (177)
T 3e3v_A 24 ALNYLSYQLRTRKEVEDKLRSL----DIHED-YISEIINKLIDLDLINDKNYAESYVRTMMNTSDKGPK-V---IKLNLS 94 (177)
T ss_dssp HHHHHHSSCCCHHHHHTTSGGG----TCCHH-HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCCHH-H---HHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHc----CCCHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccccHH-H---HHHHHH
Confidence 3445544466777777766554 34443 688899999988876642 332222211111 13332 2 334567
Q ss_pred hhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHH-HHHHHhcCCChh
Q 048759 233 SFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKS-VEFLLGRGIPSG 311 (442)
Q Consensus 233 ~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k-~~fl~~~G~s~~ 311 (442)
.-|++.+.|...+...+ .++-.+.-...+. ++++..-..+....+.| +.||..-||+.+
T Consensus 95 ~KGI~~~~I~~al~~~~------~~de~e~a~~l~~--------------Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~ 154 (177)
T 3e3v_A 95 KKGIDDNIAEDALILYT------DKLQVEKGVTLAE--------------KLANRYSHDSYRNKQNKIKQSLLTKGFSYD 154 (177)
T ss_dssp TTTCCHHHHHHHHTTSC------HHHHHHHHHHHHH--------------HHHHHTTTSCHHHHHHHHHHHHHHTTCCHH
T ss_pred HcCCCHHHHHHHHHhCC------chhHHHHHHHHHH--------------HHHhhccCCChHHHHHHHHHHHHHCCCCHH
Confidence 78999988887765421 1111111111111 11222222233344445 678888999999
Q ss_pred HHHHHHhh
Q 048759 312 DLAKMVVQ 319 (442)
Q Consensus 312 ~i~~~v~~ 319 (442)
.|..++..
T Consensus 155 ~I~~vl~~ 162 (177)
T 3e3v_A 155 IIDTIIQE 162 (177)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99877754
No 36
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=42.46 E-value=1.3e+02 Score=24.04 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 189 KPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 189 ~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
...+.-|.++|++...+.+.+..+ . ..+...++||.+
T Consensus 79 e~~v~~L~~MGF~~~~a~~AL~~~----~----~~~e~A~e~L~~ 115 (126)
T 2lbc_A 79 EEIVAIITSMGFQRNQAIQALRAT----N----NNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH----T----SCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C----CCHHHHHHHHHh
Confidence 346777888899888777777654 1 244566677754
No 37
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=41.69 E-value=42 Score=22.22 Aligned_cols=38 Identities=13% Similarity=0.270 Sum_probs=25.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 188 IKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 188 l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
-...+.-|.++|++++.+.+.|+.+- .++...++||-+
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY--------NNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT--------SCSHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 34567778888888888877777552 234466666644
No 38
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=41.54 E-value=5.6 Score=33.03 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=5.3
Q ss_pred cCCccceeeecccC
Q 048759 428 DESDDEVLYKRTVS 441 (442)
Q Consensus 428 ~~~~~~~~~~~~~~ 441 (442)
|+|++.+.-+|+||
T Consensus 119 d~d~e~~~rkR~vS 132 (140)
T 3iab_B 119 DDDKETQLKKRAVS 132 (140)
T ss_dssp ------CEEEEEEE
T ss_pred cccccchheeeeee
Confidence 33344455578776
No 39
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=40.65 E-value=22 Score=24.01 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCC-ChhHHHHHHh
Q 048759 296 IMKSVEFLLGRGI-PSGDLAKMVV 318 (442)
Q Consensus 296 l~~k~~fl~~~G~-s~~~i~~~v~ 318 (442)
...+++-|.+||| +.+.+.+++.
T Consensus 12 ~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 12 FQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456666667777 5555444443
No 40
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=39.83 E-value=46 Score=22.36 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=17.8
Q ss_pred cchHHHHHHHHhcCC-ChHHHHHHHHhc
Q 048759 186 TMIKPLVDYLVSLGL-PIKILARMLEKR 212 (442)
Q Consensus 186 ~~l~p~v~~L~~lG~-~~~~i~~~l~~~ 212 (442)
......+.-|.++|+ +++...+.|...
T Consensus 10 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t 37 (52)
T 2jy5_A 10 VRFQQQLEQLSAMGFLNREANLQALIAT 37 (52)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 455667788888888 666556665543
No 41
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=39.79 E-value=55 Score=26.06 Aligned_cols=22 Identities=0% Similarity=0.117 Sum_probs=13.8
Q ss_pred CCChhhHHHHHHhCCccccccc
Q 048759 91 GIAKSKLGEFVKKYPQVLHASV 112 (442)
Q Consensus 91 G~s~~~i~~lv~~~P~lL~~~~ 112 (442)
.++.+++-.++..+|.++-+.+
T Consensus 78 ~ls~~~~~~lm~~~p~LikRPI 99 (120)
T 3fz4_A 78 QLSLDEAANLLASDGMLIKRPL 99 (120)
T ss_dssp GCCHHHHHHHHHHCGGGBCSCE
T ss_pred cCCHHHHHHHHHhChheEeccE
Confidence 3466666666777777665553
No 42
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=39.45 E-value=67 Score=25.52 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=37.9
Q ss_pred HHHHHHHHhCCCCCccccCCCCCccHHHHHHHHHHHHHCCCCccccccCCccccccccccchHHHHHH--HH--cCCChh
Q 048759 20 VKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYL--EK--IGIAKS 95 (442)
Q Consensus 20 ~~~~~~L~~~Gi~~~~i~~~~~~~~~~~~~~~l~~L~~lG~s~~~i~~~P~ll~~~~~~~l~~~l~~L--~~--lG~s~~ 95 (442)
.....||+..|++...+.-...+.+.+.+ .+++..+|.+.+++- ..+ .+...-| .+ -.++.+
T Consensus 18 ~ka~~~L~~~gi~~~~~di~~~~~~~~eL---~~~l~~~g~~~~~l~------n~~-----~~~~k~l~l~~k~~~ls~~ 83 (120)
T 3gkx_A 18 QKAKKWLIENNIEYTNRLIVDDNPTVEEL---KAWIPLSGLPVKKFF------NTS-----GVVYKELKLSSKLPTMTEE 83 (120)
T ss_dssp HHHHHHHHHTTCCCEEEETTTTCCCHHHH---HHHHHHHTSCGGGGB------CTT-----SHHHHHTTHHHHGGGSCHH
T ss_pred HHHHHHHHHcCCceEEEecccCcCCHHHH---HHHHHHcCCCHHHeE------eCC-----CchhhhcCcchhcccCCHH
Confidence 34566777777775543222223333333 445555665544431 111 0111111 11 235666
Q ss_pred hHHHHHHhCCccccccc
Q 048759 96 KLGEFVKKYPQVLHASV 112 (442)
Q Consensus 96 ~i~~lv~~~P~lL~~~~ 112 (442)
++..++..+|.++-+.+
T Consensus 84 ~~~~lm~~~p~LikRPi 100 (120)
T 3gkx_A 84 EQIALLATNGKLVKRPL 100 (120)
T ss_dssp HHHHHHTTCGGGBCSCE
T ss_pred HHHHHHHhChhheECcE
Confidence 66677777777765553
No 43
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.03 E-value=27 Score=23.83 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHhh
Q 048759 297 MKSVEFLLGRGIPSGDLAKMVVQ 319 (442)
Q Consensus 297 ~~k~~fl~~~G~s~~~i~~~v~~ 319 (442)
..+|+-|.++||+.+++.+++..
T Consensus 10 e~~I~~L~~lGF~r~~ai~AL~~ 32 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVI 32 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 34577777778887777666543
No 44
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=38.33 E-value=58 Score=27.44 Aligned_cols=110 Identities=12% Similarity=0.024 Sum_probs=62.1
Q ss_pred cHHHHHHHHHHHHHCCCCcccc-c-c--CCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHH
Q 048759 44 TIEVMEERVMFLQKLGLTIDDI-N-E--YPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPV 119 (442)
Q Consensus 44 ~~~~~~~~l~~L~~lG~s~~~i-~-~--~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~ 119 (442)
+.+.+..+|+.|.+.|+=.+.- + . .-.+-. ......+.+-|..-|++.+.|..++..... +.....
T Consensus 47 ~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~~---~~G~~~I~~eL~~KGI~~~~I~~al~~~~~-------de~e~a 116 (162)
T 3dfg_A 47 EPEAAQAAVERLAGEGWQDDVRFAASVVRNRASS---GYGPLHIRAELGTHGLDSDAVSAAMATFEG-------DWTENA 116 (162)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTT---TCCHHHHHHHHHHTTCCHHHHHHHHTTCCS-------CHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc---cccHHHHHHHHHHcCCCHHHHHHHHHhCcH-------hHHHHH
Confidence 4557788899999999876653 1 1 111111 122356788899999999999888876421 112222
Q ss_pred HHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHHHhCCCccccccccccCC
Q 048759 120 VKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQYP 177 (442)
Q Consensus 120 v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~~lG~~~~~i~~li~~~P 177 (442)
...++. ++..-...+. ..-...+.||..-|++.+.|..++...|
T Consensus 117 ~~l~~K-------------k~~~~~~~~~-~~k~K~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 117 LDLIRR-------------RFGEDGPVDL-AQRRKAADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHHHH-------------HHCTTCCCSH-HHHHHHHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHH-------------hcCCCCCCCH-HHHHHHHHHHHHCCCCHHHHHHHHhcCc
Confidence 222221 1111001111 1223455788888999988888876554
No 45
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.38 E-value=22 Score=23.32 Aligned_cols=23 Identities=9% Similarity=0.252 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCChhHHHHHHhhc
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~ 320 (442)
.+++-|.+|||+.+.+.+++..+
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~ 33 (47)
T 2ekk_A 11 QQLQQLMDMGFTREHAMEALLNT 33 (47)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 56777888999999888888775
No 46
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 4gjr_A* 4gg4_A* 4gjp_A* 3v6p_A 2kq5_A
Probab=36.02 E-value=1.9e+02 Score=28.36 Aligned_cols=251 Identities=10% Similarity=0.105 Sum_probs=132.6
Q ss_pred hHHHHHHH--HcCCChhhHHHHHHhCCccccccccccHHHHHHHHHh-CCCCCChHHHHHhhcCcccccccchhHHHHHH
Q 048759 81 IPVFSYLE--KIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRG-LDVEKEDIGYVLMKYPELLGFKLEGTMSTSVA 157 (442)
Q Consensus 81 ~~~l~~L~--~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~-lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~ 157 (442)
.+...-|. -++++++++..|-+.+-.-=. -..+.....-|+. +|++++++..|-+.+---=. + +++.....
T Consensus 54 ~~~~~~l~~apl~ls~~qvvaIA~n~GGkqA---leaV~~l~p~L~~a~gLs~~qVVaIAsn~GGkqA--L-e~V~~~lp 127 (499)
T 3v6t_A 54 HAWRNALTGAPLNLTPEQVVAIASHDGGKQA---LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQA--L-ETVQRLLP 127 (499)
T ss_dssp HHTHHHHHSTTTCCCHHHHHHHHSSTTHHHH---HHHHHHHHHHHHHHSCCCHHHHHHHHSSTTHHHH--H-HHHHHHHH
T ss_pred HHHHHHhhCCCcCCCHHHHHHHHhcCCcHHH---HHHHHHHHHHHHHhcCCCHHHhhhhhhcCccHHH--H-HHHHHhhH
Confidence 33444444 379999999887764322110 0133334444555 99999999988765421111 1 23555555
Q ss_pred HHHH-hCCCccccccccccCCceeecccccchHHHHHHHH-hcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh-h
Q 048759 158 YLVS-IGVSPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLV-SLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS-F 234 (442)
Q Consensus 158 ~L~~-lG~~~~~i~~li~~~P~lL~~s~~~~l~p~v~~L~-~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~-~ 234 (442)
.|.. .|++.++|..|-...-.- .-.+ .++.-.-.|+ ..|+++++|..+-.....-- -++ .++.-.-.|.+ .
T Consensus 128 vL~~~~~Ls~~qVVaIAsn~GGk--QALe-aV~~llpvL~~a~gls~~qVvaIAsN~GGkQ--ALe-aV~~llpvl~~~~ 201 (499)
T 3v6t_A 128 VLCQAHGLTPEQVVAIASHDGGK--QALE-TVQALLPVLCQAHGLTPEQVVAIASNGGGKQ--ALE-TVQRLLPVLCQAH 201 (499)
T ss_dssp HHHHTSCCCHHHHHHHHSSTTHH--HHHH-HHHHHHHHHHHTSCCCHHHHHHHHSSTTHHH--HHH-HHHHHHHHHHHHH
T ss_pred HhhhhcCCCHHHhHHHhhcCCcH--HHHH-HHHHhhHHHHHhcCCCHHHHHHHhcccchHH--HHH-HHHHhhhhHHhhc
Confidence 5665 699999988885432110 0011 2233333343 48999988877644321100 122 44555555665 7
Q ss_pred cCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHHh-cCCChhHH
Q 048759 235 GIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLG-RGIPSGDL 313 (442)
Q Consensus 235 G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~-~G~s~~~i 313 (442)
|++.+++..|-.+.-.-=.+ +.+.+..-.+....|++.+++..+-...-. ..--+....-.-.|+. .|++.++|
T Consensus 202 gls~~qVVaiAsn~GGkQAL---eaV~~llp~L~~a~~ls~~qVvaIAsN~GG--kQALeaV~~~lpvl~~~~~lt~aqV 276 (499)
T 3v6t_A 202 GLTPQQVVAIASNGGGKQAL---ETVQRLLPVLCQAHGLTPQQVVAIASNGGG--KQALETVQRLLPVLCQAHGLTPQQV 276 (499)
T ss_dssp CCCHHHHHHHHSSTTHHHHH---HHHHHHHHHHTTTSCCCHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cCCHHHHHHHhhccchHHHH---HHHHHhhhHHHhhcCCCHHHhhhhhcccch--HHHHHHHHHhcccccccccCCHHHe
Confidence 99999988765433221111 123333344444579999988765332111 0112333344445554 79999999
Q ss_pred HHHHhhcCcccccChhhhHhHHHHHHHHhCCChhhHh
Q 048759 314 AKMVVQCPQLIACRVELMKNSFYFFKSEMGRPIKELI 350 (442)
Q Consensus 314 ~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~~~~~v~ 350 (442)
..+-...-- ..-+|.++.-.-.|....|++..+|+
T Consensus 277 VaIAsn~GG--kQALeaV~~llpvL~~~~~L~~~qVv 311 (499)
T 3v6t_A 277 VAIASNSGG--KQALETVQRLLPVLCQAHGLTPQQVV 311 (499)
T ss_dssp HHHHSSTTH--HHHHHHHHHHHHHHHTTTCSCHHHHH
T ss_pred eeeccCCcc--HHHHHHHHHhhHHHHHhcCCCHHHHH
Confidence 755421100 00123444444455555688877765
No 47
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=35.66 E-value=38 Score=24.65 Aligned_cols=53 Identities=21% Similarity=0.413 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHH--HHHHhCCCCCChHHHHH
Q 048759 82 PVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV--KFLRGLDVEKEDIGYVL 137 (442)
Q Consensus 82 ~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v--~fL~~lG~~~~~i~~il 137 (442)
..++|+.+.|+......+.-..+ -..+..+++.|=+ +.|+++|+...+|-+++
T Consensus 4 dWf~FFl~aGv~~~~c~rYA~~F---~~~ri~e~mL~Dl~~~~Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 4 DWFEFFLNCGVDVSNCQRYTINF---DREQLTEDMMPDINNSMLRTLGLREGDIVRVM 58 (72)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH---HHTTCCGGGGGGCCHHHHHHTTCCHHHHHHHH
T ss_pred cHHHHHHHcCCChHHHHHHHHHH---HHccCCHHHHhhCCHHHHHHcCCchhhHHHHH
Confidence 46788888888876654432211 1112223333322 57888888765655554
No 48
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.24 E-value=30 Score=24.33 Aligned_cols=40 Identities=10% Similarity=0.151 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhC
Q 048759 297 MKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMG 343 (442)
Q Consensus 297 ~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg 343 (442)
..+++-|.+|||+.+++.++++.+-. ++..-++||...+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~A~e~L~~~~~ 49 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATNN-------SLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-------CHHHHHHHHHhCCC
Confidence 35678888999999999888887632 46666788876543
No 49
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=35.11 E-value=52 Score=23.16 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=10.8
Q ss_pred hhcCChHHHHHHHHhCC
Q 048759 233 SFGIRREKLASVIAQYP 249 (442)
Q Consensus 233 ~~G~~~~~i~~~i~~~P 249 (442)
.+|++...+.+++...+
T Consensus 9 ~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 9 LAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHTSCHHHHHHHHHTCT
T ss_pred HHCcCHHHHHHHHcCCC
Confidence 45777777766666544
No 50
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=34.68 E-value=29 Score=26.07 Aligned_cols=41 Identities=10% Similarity=-0.033 Sum_probs=31.4
Q ss_pred HHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhCC
Q 048759 297 MKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMGR 344 (442)
Q Consensus 297 ~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg~ 344 (442)
..+++-|.+|||+.+++.++++.+- ..+..-++||....|-
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~-------gdve~A~e~L~sh~~~ 70 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG-------GNVQLAAQTLAHHGGS 70 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT-------TCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHhCCCC
Confidence 4678889999999999988776543 2467778999877773
No 51
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=34.62 E-value=30 Score=25.23 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHH
Q 048759 297 MKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKS 340 (442)
Q Consensus 297 ~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~ 340 (442)
..+++-|.+|||+.+++.++++.+=. ++..-++||.+
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~~-------nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASGG-------DIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTS-------CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 35677888899999998877766432 45555666654
No 52
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.14 E-value=54 Score=23.88 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=28.7
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 187 MIKPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 187 ~l~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
.....|.-|.+||++++.+.+.|+.+- .++...++||.+
T Consensus 28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~--------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 28 ASEEQIQKLVAMGFDRTQVEVALAAAD--------DDLTVAVEILMS 66 (73)
T ss_dssp CCHHHHHHHHTTTCCHHHHHHHHHHHT--------SCHHHHHHHHHT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 456688889999999988888887652 245567777754
No 53
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=32.87 E-value=78 Score=25.99 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=9.3
Q ss_pred CChhhHHHHHHhCCcccccc
Q 048759 92 IAKSKLGEFVKKYPQVLHAS 111 (442)
Q Consensus 92 ~s~~~i~~lv~~~P~lL~~~ 111 (442)
++.+++-.++..+|.++.+.
T Consensus 76 ls~~~~~~lm~~~P~LikRP 95 (141)
T 1s3c_A 76 FTDDQLIDFMLQHPILINRP 95 (141)
T ss_dssp CCHHHHHHHHHHSGGGBCSC
T ss_pred CCHHHHHHHHHhCccceEcc
Confidence 34444444455555544433
No 54
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.48 E-value=72 Score=22.39 Aligned_cols=36 Identities=8% Similarity=0.240 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 190 PLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 190 p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
..|+-|.++|++.+.+.+.|..+- .++...++||.+
T Consensus 11 ~~I~~L~~MGF~~~~a~~AL~~~~--------~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITEMGFSKEASRQALMDNG--------NNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 467788889998888777776551 245567777764
No 55
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=30.96 E-value=1e+02 Score=24.30 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=11.6
Q ss_pred CChhhHHHHHHhCCcccccc
Q 048759 92 IAKSKLGEFVKKYPQVLHAS 111 (442)
Q Consensus 92 ~s~~~i~~lv~~~P~lL~~~ 111 (442)
++.+++-.++..+|.++-+.
T Consensus 74 ls~~~~~~~m~~~p~LikRP 93 (120)
T 3l78_A 74 LSVSELINLISKNPSLLRRP 93 (120)
T ss_dssp CCHHHHHHHHHHCGGGBCSC
T ss_pred CCHHHHHHHHHhCccceecc
Confidence 44555666666666665544
No 56
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=30.64 E-value=89 Score=26.72 Aligned_cols=83 Identities=20% Similarity=0.131 Sum_probs=50.1
Q ss_pred HHHHHHHHhCCCCCccccCCCC--CccHHHHHHHHHHHHHCCCCcccc-c-cC--CccccccccccchHHHHHHHHcCCC
Q 048759 20 VKICDYLKSLGIIPDELENLEL--PSTIEVMEERVMFLQKLGLTIDDI-N-EY--PLMLGCSMRKNMIPVFSYLEKIGIA 93 (442)
Q Consensus 20 ~~~~~~L~~~Gi~~~~i~~~~~--~~~~~~~~~~l~~L~~lG~s~~~i-~-~~--P~ll~~~~~~~l~~~l~~L~~lG~s 93 (442)
...+.||..---+...+..-+. -.+.+.+..+|+.|.+.|+=.+.- + .+ -++-.. ......+.+-|+.-|++
T Consensus 22 ~~Al~~Ls~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~--~~G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 22 NAALNYLSYQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTS--DKGPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHSSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHTTTCC
T ss_pred HHHHHHhccccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcc--cccHHHHHHHHHHcCCC
Confidence 3445566654455444444332 256778899999999999876652 1 11 111110 11235677888888999
Q ss_pred hhhHHHHHHhC
Q 048759 94 KSKLGEFVKKY 104 (442)
Q Consensus 94 ~~~i~~lv~~~ 104 (442)
.+.|..++...
T Consensus 100 ~~~I~~al~~~ 110 (177)
T 3e3v_A 100 DNIAEDALILY 110 (177)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHHhC
Confidence 99888877643
No 57
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.21 E-value=53 Score=23.12 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHH
Q 048759 190 PLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLI 232 (442)
Q Consensus 190 p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~ 232 (442)
..|+-|.++|++.+...+.++... .+++..++||=
T Consensus 21 e~V~~LvsMGFs~~qA~kALKat~--------~NvErAaDWLF 55 (63)
T 1wgn_A 21 QCVETVVNMGYSYECVLRAMKKKG--------ENIEQILDYLF 55 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHC--------SCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHH
Confidence 456667777777777777766552 35556666663
No 58
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=28.94 E-value=56 Score=21.38 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHhcCCChh
Q 048759 294 HVIMKSVEFLLGRGIPSG 311 (442)
Q Consensus 294 ~~l~~k~~fl~~~G~s~~ 311 (442)
+..+.+++-|.+|||+.+
T Consensus 5 ~~~~~~i~~L~~MGF~d~ 22 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDF 22 (46)
T ss_dssp HHTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHcCCCcH
Confidence 344566777777777533
No 59
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=28.43 E-value=63 Score=22.69 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=27.0
Q ss_pred HhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChHHHHH
Q 048759 196 VSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRREKLAS 243 (442)
Q Consensus 196 ~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~~i~~ 243 (442)
+.+|++...|.+++...+.-+..+.+ +.+...+..+++|+.++...+
T Consensus 8 ~~aGVS~sTVSrvLng~~~~~~vs~e-t~~rI~~aa~~lgY~pn~~a~ 54 (65)
T 1uxc_A 8 RLAGVSRTTASYVINGKAKQYRVSDK-TVEKVMAVVREHNYHPNAVAA 54 (65)
T ss_dssp HHHTSCHHHHHHHHHTCTTTTTCTTH-HHHHHHHHHHHHTCCCC----
T ss_pred HHHCcCHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHHHhCCCccHHHH
Confidence 46789888888888876622234443 444445555567776655433
No 60
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=27.49 E-value=11 Score=33.73 Aligned_cols=14 Identities=29% Similarity=0.677 Sum_probs=8.7
Q ss_pred cccCCccceeeecc
Q 048759 426 EEDESDDEVLYKRT 439 (442)
Q Consensus 426 ~~~~~~~~~~~~~~ 439 (442)
||+|+|++|.|..+
T Consensus 164 eeed~~~e~~~~~~ 177 (208)
T 2iu1_A 164 EDEDENIEVVYSKL 177 (208)
T ss_dssp CCCSCHHHHHHHHH
T ss_pred cccccccceeccCc
Confidence 44455677888654
No 61
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=27.33 E-value=97 Score=20.97 Aligned_cols=39 Identities=18% Similarity=0.116 Sum_probs=23.5
Q ss_pred chHHHHHHHHhcCCChHH-HHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 187 MIKPLVDYLVSLGLPIKI-LARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 187 ~l~p~v~~L~~lG~~~~~-i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
.....+.-|.++|+++.+ ..++|...- .++...+++|-+
T Consensus 8 ~~~~~l~~L~~MGF~d~~~n~~AL~~~~--------Gdv~~Ave~L~~ 47 (54)
T 2dah_A 8 HFQVQLEQLRSMGFLNREANLQALIATG--------GDVDAAVEKLRQ 47 (54)
T ss_dssp SSHHHHHHHHHHTCCCHHHHHHHHHHHT--------SCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 456677888888886643 355555431 255566666654
No 62
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=27.05 E-value=54 Score=23.90 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=20.1
Q ss_pred HHHHHHH-hcCCChhHHHHHHhhcC
Q 048759 298 KSVEFLL-GRGIPSGDLAKMVVQCP 321 (442)
Q Consensus 298 ~k~~fl~-~~G~s~~~i~~~v~~~P 321 (442)
..+..|. ++|++.++|..++...|
T Consensus 54 ~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 54 RRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHccC
Confidence 4578888 89999999998887765
No 63
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=26.59 E-value=25 Score=23.20 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=12.9
Q ss_pred HHHHHHhcCCChhHHHHHHhhc
Q 048759 299 SVEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 299 k~~fl~~~G~s~~~i~~~v~~~ 320 (442)
+|+-|.+|||+...+.+++..+
T Consensus 7 aI~rL~~mGF~~~~a~~Al~a~ 28 (47)
T 1dv0_A 7 AIERLKALGFPESLVIQAYFAC 28 (47)
T ss_dssp HHTTTTTTTCCHHHHHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 3455566777777666554443
No 64
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=25.85 E-value=2.9e+02 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCChhHHHHHHhhcC
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQCP 321 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~P 321 (442)
+-+.||..-||+.+.|..++...|
T Consensus 137 K~~~~L~rrGF~~~~I~~~l~~~~ 160 (162)
T 3dfg_A 137 KAADLLARRGFDGNSIRLATRFDL 160 (162)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTC--
T ss_pred HHHHHHHHCCCCHHHHHHHHhcCc
Confidence 347888889999999987776544
No 65
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=25.35 E-value=97 Score=24.51 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=10.1
Q ss_pred CChhhHHHHHHhCCcccccc
Q 048759 92 IAKSKLGEFVKKYPQVLHAS 111 (442)
Q Consensus 92 ~s~~~i~~lv~~~P~lL~~~ 111 (442)
++.+++-.++..+|.++-+.
T Consensus 79 ls~~~~~~lm~~~p~LikRP 98 (119)
T 3f0i_A 79 LSDDALFAAMAEHPKLIERP 98 (119)
T ss_dssp CCHHHHHHHHHHCGGGBCSC
T ss_pred CCHHHHHHHHHhChhheeCC
Confidence 34445555555555555443
No 66
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.76 E-value=48 Score=24.14 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhC
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMG 343 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg 343 (442)
.+++-|.+|||+.+.+.++++.+-. ..+..-++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~n------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 11 SVIIQLVEMGFPMDACRKAVYYTGN------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHTS------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCC------CCHHHHHHHHHhCCC
Confidence 4577788899999998888775532 136667889887654
No 67
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=24.59 E-value=17 Score=31.27 Aligned_cols=15 Identities=7% Similarity=0.200 Sum_probs=7.3
Q ss_pred hhhcCChhhHHHHHh
Q 048759 382 WFLNCSDQRFEERLL 396 (442)
Q Consensus 382 ~~l~~sd~~F~~~~~ 396 (442)
.+.....+.|.++..
T Consensus 128 ~~~~~d~~~y~~~~r 142 (169)
T 1ayz_A 128 TLFKDHKSQYVKRVK 142 (169)
T ss_dssp HHHHHCHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHH
Confidence 334444556655543
No 68
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=24.46 E-value=96 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=11.0
Q ss_pred CChhhHHHHHHhCCcccccc
Q 048759 92 IAKSKLGEFVKKYPQVLHAS 111 (442)
Q Consensus 92 ~s~~~i~~lv~~~P~lL~~~ 111 (442)
++.+++-.++..+|.++...
T Consensus 73 ~~~~~~~~~l~~~p~likrP 92 (114)
T 1rw1_A 73 LDEAKAIELMLAQPSMIKRP 92 (114)
T ss_dssp CCHHHHHHHHHHCGGGBCSC
T ss_pred CCHHHHHHHHHhChhheeCc
Confidence 45555555556666555444
No 69
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.38 E-value=89 Score=27.78 Aligned_cols=112 Identities=14% Similarity=0.071 Sum_probs=59.9
Q ss_pred cHHHHHHHHHHHHHCCCCcccc-c-c--CCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHH
Q 048759 44 TIEVMEERVMFLQKLGLTIDDI-N-E--YPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPV 119 (442)
Q Consensus 44 ~~~~~~~~l~~L~~lG~s~~~i-~-~--~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~ 119 (442)
+.+.+..+++.|.+.|+=.+.- + . .-++-.. ......+.+-|+.-|++.+.|..++...+. +......
T Consensus 91 ~~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~--~~G~~~I~~eL~~KGI~~~~I~~al~~~~~------~~e~e~a 162 (221)
T 3d5l_A 91 PEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTD--LKGPGIIRQHLRQKGIGESDIDDALTQFTP------EVQAELA 162 (221)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHTTCCHHHHHHHGGGCCH------HHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc--cccHHHHHHHHHHcCCCHHHHHHHHHhCCH------HHHHHHH
Confidence 4567788899999888876652 1 1 1111100 112356778888899999888877765321 1111111
Q ss_pred HHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHHHHHHhCCCccccccccccC
Q 048759 120 VKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVAYLVSIGVSPRDIGPMVTQY 176 (442)
Q Consensus 120 v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~~L~~lG~~~~~i~~li~~~ 176 (442)
...++ +-...++. .+....-...+.||..-|++.+.|.+++...
T Consensus 163 ~~l~~----------Kk~~~~~~---~~~~~~k~K~~~~L~rrGFs~~~I~~vl~~~ 206 (221)
T 3d5l_A 163 KKLAL----------KLFRRYRN---QPERRREQKVQQGLTTKGFSSSVYEMIKDEV 206 (221)
T ss_dssp HHHHH----------HHHHHTTT---SCHHHHHHHHHHHHHHTTCCHHHHHHHTTC-
T ss_pred HHHHH----------HHHhhccC---CChHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence 11111 11111111 1111224556678888888888888777654
No 70
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=24.30 E-value=1.7e+02 Score=24.42 Aligned_cols=72 Identities=24% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCCCccccCCCCC-----ccHHHHHHHHHHHHHCCCCccccc-----cCCccccccccccchHHHHHHHHcCCC---hhh
Q 048759 30 GIIPDELENLELP-----STIEVMEERVMFLQKLGLTIDDIN-----EYPLMLGCSMRKNMIPVFSYLEKIGIA---KSK 96 (442)
Q Consensus 30 Gi~~~~i~~~~~~-----~~~~~~~~~l~~L~~lG~s~~~i~-----~~P~ll~~~~~~~l~~~l~~L~~lG~s---~~~ 96 (442)
|++.....-...+ .+.+.+.+.+.-|.+-|+++.+|. +++--....+..+ .+.+.|++.|+. ++|
T Consensus 12 G~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~vtG~--kI~rILk~~glapeiPED 89 (153)
T 2xzm_O 12 GISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFLTGQ--KILRILKKNGCAPQLPED 89 (153)
T ss_dssp CCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHHHSS--CHHHHHHHTTCCCSSCHH
T ss_pred CccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeeeccc--hHHHHHHHcCCCCCCcHH
Q ss_pred HHHHHHh
Q 048759 97 LGEFVKK 103 (442)
Q Consensus 97 i~~lv~~ 103 (442)
+..++.+
T Consensus 90 L~~LikK 96 (153)
T 2xzm_O 90 LYFLIKK 96 (153)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 71
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.61 E-value=1.1e+02 Score=22.40 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=24.4
Q ss_pred ccchHHHHHHHHhcCCC-hHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 185 GTMIKPLVDYLVSLGLP-IKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 185 ~~~l~p~v~~L~~lG~~-~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
+...+..+.-|.+||+. ++.+.++|+..- .++...++||-+
T Consensus 26 e~~ye~qi~qL~eMGF~dr~~~~~AL~~t~--------Gnve~Ave~L~~ 67 (74)
T 1vej_A 26 EGRYQQELEELKALGFANRDANLQALVATD--------GDIHAAIEMLLG 67 (74)
T ss_dssp TTTSHHHHHHHHHHTCCCHHHHHHHHHHTT--------SCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCCcHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 34566778888888884 455455555431 245566666643
No 72
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.33 E-value=1e+02 Score=23.09 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 189 KPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 189 ~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
..+|.-|.+|||+++.+.++|+.+- ..+...++||-.
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~--------gdve~A~e~L~s 66 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG--------GNVQLAAQTLAH 66 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHh
Confidence 4578888889999888888887652 246677777764
No 73
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.08 E-value=66 Score=22.25 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHhcCCC
Q 048759 294 HVIMKSVEFLLGRGIP 309 (442)
Q Consensus 294 ~~l~~k~~fl~~~G~s 309 (442)
+..+.+++-|.+|||+
T Consensus 15 ~~~~~qi~~L~~MGF~ 30 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFF 30 (58)
T ss_dssp HHTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCC
Confidence 3445566666677764
No 74
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.03 E-value=62 Score=22.80 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHH
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKS 340 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~ 340 (442)
..++-|.+|||+.+.+.+++..+-. .++..-++||.+
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~------~nve~A~ewL~~ 57 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG------RSVQTACDWLFS 57 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT------SCHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC------CCHHHHHHHHHh
Confidence 4567788899999888877766442 235555666653
No 75
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.82 E-value=1.2e+02 Score=22.71 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHhhcCChH
Q 048759 189 KPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLISFGIRRE 239 (442)
Q Consensus 189 ~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~~G~~~~ 239 (442)
.+.+.-|.++|++++.+.++|..+ ...+...++||-+...+.+
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~~--------n~n~e~A~ewL~~h~~D~D 64 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKSN--------NMNLDQAMSALLEKKVDVD 64 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT--------TSCHHHHHHHHHTTSCCSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc--------CCCHHHHHHHHHHCcCCcc
No 76
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.32 E-value=4.2e+02 Score=23.23 Aligned_cols=25 Identities=12% Similarity=0.008 Sum_probs=18.7
Q ss_pred hHHHH-HHHHHhcCCChhHHHHHHhh
Q 048759 295 VIMKS-VEFLLGRGIPSGDLAKMVVQ 319 (442)
Q Consensus 295 ~l~~k-~~fl~~~G~s~~~i~~~v~~ 319 (442)
..+.| +.||..-||+.+.|..++..
T Consensus 180 ~~k~K~~~~L~rrGFs~~~I~~vl~~ 205 (221)
T 3d5l_A 180 RREQKVQQGLTTKGFSSSVYEMIKDE 205 (221)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 33444 78888899999999877654
No 77
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=21.31 E-value=48 Score=26.66 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=19.7
Q ss_pred cCChhhHHHHHh----hcccccc--cCCCccccCCe--ecCCCCCCCCCcccCCccc
Q 048759 385 NCSDQRFEERLL----GNYIESE--SSGPSFCIGGK--LVLPGSEVVSDEEDESDDE 433 (442)
Q Consensus 385 ~~sd~~F~~~~~----~~~~e~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 433 (442)
..|+-.|-.||. ++|.... ....+..+.++ ..+.=+++.+|||+|+|||
T Consensus 65 V~s~~~fSKRYLKYLTKKyLKK~~LRDwlRVVa~~K~~YeLryf~I~~de~eee~e~ 121 (121)
T 3izc_W 65 VVSTAKFSGKYLKYLTKKYLKKNQLRDWIRFVSTKTNEYRLAFYQVTPEEDEEEDEE 121 (121)
T ss_dssp EEESSSCSHHHHHHHHHHHHTTSSSCCCCCCSSSCSSCEEEECCCC-----------
T ss_pred EEeccccchHHHHHHHHHHhhhccccceEEEEecCCCeEEEEEEeeCCCcccccccC
Confidence 344555555554 3443221 34466666666 4455677877777777664
No 78
>3fze_A Protein STE5; alpha/beta/alpha, VWA-like fold (SCOP), cytoplasm, pheromone response, phosphoprotein, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 4f2h_A
Probab=21.22 E-value=28 Score=30.20 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=1.7
Q ss_pred CCCCcccCC
Q 048759 422 VVSDEEDES 430 (442)
Q Consensus 422 ~~~~~~~~~ 430 (442)
+||||+|||
T Consensus 187 dDdd~~d~d 195 (196)
T 3fze_A 187 EHDDDDEED 195 (196)
T ss_dssp CCCC-----
T ss_pred CCCcccccC
Confidence 334444444
No 79
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.92 E-value=2e+02 Score=19.59 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=14.5
Q ss_pred cchHHHHHHHHhcCCChH-HHHHHHHhc
Q 048759 186 TMIKPLVDYLVSLGLPIK-ILARMLEKR 212 (442)
Q Consensus 186 ~~l~p~v~~L~~lG~~~~-~i~~~l~~~ 212 (442)
+.-.+.+.-|.++||.+. .-.++|+++
T Consensus 7 e~~a~~L~~L~eMGF~D~~~N~~aL~~~ 34 (54)
T 2cp8_A 7 GQTAALMAHLFEMGFCDRQLNLRLLKKH 34 (54)
T ss_dssp TTHHHHHHHHHHHTCCCHHHHHHHHTTT
T ss_pred HhhHHHHHHHHHcCCCcHHHHHHHHHHc
Confidence 344556677777777443 333444443
No 80
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=20.87 E-value=1.1e+02 Score=23.95 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=14.7
Q ss_pred CCChhhHHHHHHhCCccccccc
Q 048759 91 GIAKSKLGEFVKKYPQVLHASV 112 (442)
Q Consensus 91 G~s~~~i~~lv~~~P~lL~~~~ 112 (442)
.++.+++-.++..+|.++...+
T Consensus 77 ~~~~~~~~~~l~~~p~likrPi 98 (120)
T 2kok_A 77 NVDAASARELMLAQPSMVKRPV 98 (120)
T ss_dssp SCCHHHHHHHHHHCGGGBCSSE
T ss_pred cCCHHHHHHHHHhCcccEECCE
Confidence 4566777777777777765553
No 81
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.75 E-value=73 Score=23.76 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhC
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMG 343 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg 343 (442)
.+++-|.+|||+.+.+.+++..+- .++..-++||.+.++
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~t~-------~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 31 AALRQLTEMGFPENRATKALQLNH-------MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT-------SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCCC
Confidence 457778899999999988877651 256667888886543
No 82
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.67 E-value=68 Score=22.56 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHhC
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEMG 343 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~mg 343 (442)
..++-|.+|||+.+.+.++++.+- -.++..-++||.+.+.
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~t~------~~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 11 TALESLIEMGFPRGRAEKALALTG------NQGIEAAMDWLMEHED 50 (64)
T ss_dssp CHHHHHHTTTCCHHHHHHHHHHHT------SCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhc------CCCHHHHHHHHHhCCC
Confidence 356778889999999887777431 1246667888886554
No 83
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=20.14 E-value=68 Score=25.11 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHhc-CCChhHHHHHHhhc
Q 048759 293 QHVIMKSVEFLLGR-GIPSGDLAKMVVQC 320 (442)
Q Consensus 293 ~~~l~~k~~fl~~~-G~s~~~i~~~v~~~ 320 (442)
...++.+|+.+.++ |++.++++.++..+
T Consensus 36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ 64 (104)
T 1wj7_A 36 DADFEEKVKQLIDITGKNQDECVIALHDC 64 (104)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhCCCHHHHHHHHHHc
Confidence 34567889999987 99999998777654
Done!