Query 048759
Match_columns 442
No_of_seqs 256 out of 1350
Neff 8.1
Searched_HMMs 13730
Date Mon Mar 25 22:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048759.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048759hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oqya1 a.5.2.1 (A:160-200) DN 72.3 1.7 0.00012 26.7 3.2 25 296-320 4-28 (41)
2 d2g3qa1 a.5.2.1 (A:1339-1381) 58.9 3.3 0.00024 25.3 2.5 21 300-320 8-28 (43)
3 d1oqya1 a.5.2.1 (A:160-200) DN 55.7 6.2 0.00045 23.9 3.5 26 187-212 3-28 (41)
4 d1rw1a_ c.47.1.12 (A:) Hypothe 47.6 4.4 0.00032 30.4 2.3 22 44-65 9-30 (114)
5 d1j9ba_ c.47.1.12 (A:) Arsenat 46.6 16 0.0012 28.1 5.7 79 20-112 14-94 (138)
6 d1qpza1 a.35.1.5 (A:2-58) Puri 45.3 30 0.0022 22.3 6.0 45 233-282 9-53 (57)
7 d2hsga1 a.35.1.5 (A:2-58) Gluc 45.0 18 0.0013 23.3 4.9 43 233-280 10-52 (57)
8 d1qpza1 a.35.1.5 (A:2-58) Puri 44.0 21 0.0015 23.1 5.0 48 268-318 7-54 (57)
9 d2hsga1 a.35.1.5 (A:2-58) Gluc 42.5 25 0.0018 22.7 5.2 48 268-318 8-55 (57)
10 d1z3ea1 c.47.1.12 (A:1-114) Re 39.2 40 0.0029 24.6 6.9 20 92-111 74-93 (114)
11 d1k6ya1 a.4.10.1 (A:1-46) N-te 37.5 8.3 0.0006 24.0 2.0 30 294-323 13-43 (46)
12 d1zcza1 c.24.1.3 (A:1-157) IMP 36.6 14 0.001 29.3 3.8 59 78-157 12-70 (157)
13 d1efaa1 a.35.1.5 (A:2-60) Lac 36.5 32 0.0023 22.3 5.0 18 233-250 11-28 (59)
14 d1wgna_ a.5.2.1 (A:) Ubiquitin 36.3 15 0.0011 24.3 3.4 36 190-233 21-56 (63)
15 d1rw1a_ c.47.1.12 (A:) Hypothe 36.0 32 0.0023 25.2 5.8 21 235-255 72-92 (114)
16 d1g8ma1 c.24.1.3 (A:4-200) IMP 35.0 19 0.0014 29.6 4.5 36 119-156 35-70 (197)
17 d1vg5a_ a.5.2.1 (A:) Rhomboid 35.0 23 0.0016 24.1 4.3 37 189-233 30-66 (73)
18 d1wiva_ a.5.2.1 (A:) Ubiquitin 34.7 14 0.001 25.3 3.1 36 298-340 31-66 (73)
19 d1wgna_ a.5.2.1 (A:) Ubiquitin 34.6 9.4 0.00069 25.4 2.0 37 297-340 20-56 (63)
20 d2prra1 a.152.1.3 (A:5-194) Un 34.5 27 0.002 28.0 5.6 21 226-246 139-159 (190)
21 d1vg5a_ a.5.2.1 (A:) Rhomboid 33.7 15 0.0011 25.1 3.1 37 297-340 30-66 (73)
22 d1rxwa1 a.60.7.1 (A:220-324) F 31.5 49 0.0036 23.8 6.1 20 300-319 82-102 (105)
23 d1efaa1 a.35.1.5 (A:2-60) Lac 30.3 47 0.0034 21.4 5.0 45 269-316 10-54 (59)
24 d1wiva_ a.5.2.1 (A:) Ubiquitin 28.9 33 0.0024 23.2 4.3 37 189-233 30-66 (73)
25 d1zs4a1 a.35.1.9 (A:4-81) Regu 28.6 40 0.0029 22.7 4.4 46 269-325 28-76 (78)
26 d1g8ma1 c.24.1.3 (A:4-200) IMP 27.1 17 0.0013 29.9 2.9 62 42-120 9-70 (197)
27 d1wjia_ a.5.2.1 (A:) Tudor dom 26.7 27 0.002 22.9 3.4 38 298-342 11-48 (63)
28 d1e0ea_ a.4.10.1 (A:) N-termin 26.5 13 0.00096 23.0 1.5 30 294-323 13-43 (46)
29 d2r1jl1 a.35.1.2 (L:3-68) P22 25.4 18 0.0013 23.5 2.3 11 340-350 53-63 (66)
30 d1z96a1 a.5.2.1 (A:295-332) UB 23.4 46 0.0034 18.5 3.3 22 297-318 3-24 (38)
31 d1lv3a_ g.39.1.9 (A:) Hypothet 23.4 21 0.0016 23.7 2.2 24 409-432 39-62 (65)
32 d1uxda_ a.35.1.5 (A:) Fructose 22.9 52 0.0038 21.1 4.2 17 234-250 10-26 (59)
33 d1r8ea1 a.6.1.3 (A:3-120) Tran 22.7 55 0.004 23.8 5.0 52 49-101 17-71 (118)
34 d1y9qa1 a.35.1.8 (A:4-82) Prob 21.4 38 0.0028 22.7 3.5 20 298-317 11-31 (79)
No 1
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.32 E-value=1.7 Score=26.69 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCCChhHHHHHHhhc
Q 048759 296 IMKSVEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 296 l~~k~~fl~~~G~s~~~i~~~v~~~ 320 (442)
.+.+++-|.+|||+.+++.++++.+
T Consensus 4 ~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 4 YETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp HHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 4567788888888888888777665
No 2
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=58.86 E-value=3.3 Score=25.29 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=15.1
Q ss_pred HHHHHhcCCChhHHHHHHhhc
Q 048759 300 VEFLLGRGIPSGDLAKMVVQC 320 (442)
Q Consensus 300 ~~fl~~~G~s~~~i~~~v~~~ 320 (442)
++-|.+|||+.++..+++.++
T Consensus 8 i~eL~~MGF~e~~A~~AL~k~ 28 (43)
T d2g3qa1 8 VEELSGMGFTEEEAHNALEKC 28 (43)
T ss_dssp HHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHc
Confidence 556777888888877776655
No 3
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.70 E-value=6.2 Score=23.93 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=19.5
Q ss_pred chHHHHHHHHhcCCChHHHHHHHHhc
Q 048759 187 MIKPLVDYLVSLGLPIKILARMLEKR 212 (442)
Q Consensus 187 ~l~p~v~~L~~lG~~~~~i~~~l~~~ 212 (442)
+.+..|.-|.++|++++.+.+.|+.+
T Consensus 3 ~~e~~i~~L~~MGF~~~~a~~AL~~~ 28 (41)
T d1oqya1 3 EYETMLTEIMSMGYERERVVAALRAS 28 (41)
T ss_dssp THHHHHHHHHTTTCCSHHHHHHHHHS
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 35567777888888888877777765
No 4
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=47.59 E-value=4.4 Score=30.36 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=16.8
Q ss_pred cHHHHHHHHHHHHHCCCCcccc
Q 048759 44 TIEVMEERVMFLQKLGLTIDDI 65 (442)
Q Consensus 44 ~~~~~~~~l~~L~~lG~s~~~i 65 (442)
+.+.-+..++||++.|++.+.+
T Consensus 9 ~Cs~srka~~~L~~~~i~~~~i 30 (114)
T d1rw1a_ 9 ACDTMKKARTWLDEHKVAYDFH 30 (114)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEE
T ss_pred CChHHHHHHHHHHHcCCCeEEE
Confidence 3456677889999888887765
No 5
>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}
Probab=46.58 E-value=16 Score=28.14 Aligned_cols=79 Identities=14% Similarity=0.335 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCCCccccCCCCCccHHHHHHHHHHHHHCCCCccccccCCccccccccccchHHHHHH--HHcCCChhhH
Q 048759 20 VKICDYLKSLGIIPDELENLELPSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYL--EKIGIAKSKL 97 (442)
Q Consensus 20 ~~~~~~L~~~Gi~~~~i~~~~~~~~~~~~~~~l~~L~~lG~s~~~i~~~P~ll~~~~~~~l~~~l~~L--~~lG~s~~~i 97 (442)
.+.+.||++.|++...+.-...+-+.+.+ ..+++.+|.+..++-+. . .....-| ..-.++.+++
T Consensus 14 rkal~~L~~~~i~~~~idy~k~pls~~eL---~~ll~~lg~~~~~Li~~------~-----~~~~k~l~l~~~~ls~~e~ 79 (138)
T d1j9ba_ 14 RNTLEMIRNSGTEPTIILYLENPPSRDEL---VKLIADMGISVRALLRK------N-----VEPYEQLGLAEDKFTDDQL 79 (138)
T ss_dssp HHHHHHHHHTTCCCEEECTTTSCCCHHHH---HHHHHHHTSCHHHHBCC------S-----SHHHHHTTTTSSCCCHHHH
T ss_pred HHHHHHHHHCCCCeEEEeeccCCCCHHHH---HHHHHHccCCHHHHHHc------c-----CchhhhcCCCcccCCHHHH
Confidence 45788888888887654444344444444 44555566665554210 0 0111111 1224677788
Q ss_pred HHHHHhCCccccccc
Q 048759 98 GEFVKKYPQVLHASV 112 (442)
Q Consensus 98 ~~lv~~~P~lL~~~~ 112 (442)
-.++..+|.++.+.+
T Consensus 80 i~ll~~~P~LikRPI 94 (138)
T d1j9ba_ 80 IDFMLQHPILINRPI 94 (138)
T ss_dssp HHHHHHSGGGBCSCE
T ss_pred HHHHHhCchhEecCE
Confidence 888888888877664
No 6
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=45.30 E-value=30 Score=22.27 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=24.0
Q ss_pred hhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHHHH
Q 048759 233 SFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQVV 282 (442)
Q Consensus 233 ~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~~i 282 (442)
..|++...+.+++...|.+ + +..+.++.-..+++|+.++...+-+
T Consensus 9 ~agVS~sTVSr~ln~~~~v---s--~~tr~rV~~~a~~lgY~pn~~Ar~L 53 (57)
T d1qpza1 9 RANVSTTTVSHVINKTRFV---A--EETRNAVWAAIKELHYSPSAVARSL 53 (57)
T ss_dssp HHTSCHHHHHHHHHTCSCC---C--HHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred HHCcCHHHHHHHHCCCCcc---C--HHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4577777777766655542 1 1223333334466666666655443
No 7
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=45.04 E-value=18 Score=23.32 Aligned_cols=43 Identities=12% Similarity=0.188 Sum_probs=20.2
Q ss_pred hhcCChHHHHHHHHhCCcccccChhhhhhhHHHHHHHhcCCChhHHHH
Q 048759 233 SFGIRREKLASVIAQYPQIIGLPLKAKMSSQLYFFNLKLKIDPDEFAQ 280 (442)
Q Consensus 233 ~~G~~~~~i~~~i~~~P~iL~~~~~~~l~~~~~~l~~~lG~~~~~v~~ 280 (442)
..|++...+.+++...|.+ +. ..+.++.-..+++|+.++...+
T Consensus 10 ~agvS~~TVSr~Ln~~~~V---s~--~tr~rV~~aa~~lgY~pn~~A~ 52 (57)
T d2hsga1 10 EASVSMATVSRVVNGNPNV---KP--STRKKVLETIERLGYRPNAVAR 52 (57)
T ss_dssp HTTSCHHHHHHHHTTCTTS---CH--HHHHHHHHHHHHHTCCSCHHHH
T ss_pred HHCcCHHHHHHHhCCCCcC---CH--HHHHHHHHHHHHHCcCCCHHHH
Confidence 3566666666666554432 11 1222333333555665555443
No 8
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.97 E-value=21 Score=23.07 Aligned_cols=48 Identities=6% Similarity=0.052 Sum_probs=34.0
Q ss_pred HHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHHhcCCChhHHHHHHh
Q 048759 268 NLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVV 318 (442)
Q Consensus 268 ~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~v~ 318 (442)
.+..|+|...+-+++...|. .++++-+.-.+...++|+.+..+.+-++
T Consensus 7 A~~agVS~sTVSr~ln~~~~---vs~~tr~rV~~~a~~lgY~pn~~Ar~Lr 54 (57)
T d1qpza1 7 AKRANVSTTTVSHVINKTRF---VAEETRNAVWAAIKELHYSPSAVARSLK 54 (57)
T ss_dssp HHHHTSCHHHHHHHHHTCSC---CCHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHCcCHHHHHHHHCCCCc---cCHHHHHHHHHHHHHHCCCCCHHHHHHh
Confidence 46789999998888887664 4555554545666688988887765554
No 9
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=42.49 E-value=25 Score=22.66 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHHhcCCChhHHHHHHh
Q 048759 268 NLKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKMVV 318 (442)
Q Consensus 268 ~~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~v~ 318 (442)
.+..|+|...+-+++...|. .|+++-+.-.+...++|+.+...++.++
T Consensus 8 A~~agvS~~TVSr~Ln~~~~---Vs~~tr~rV~~aa~~lgY~pn~~A~~L~ 55 (57)
T d2hsga1 8 AREASVSMATVSRVVNGNPN---VKPSTRKKVLETIERLGYRPNAVARGLA 55 (57)
T ss_dssp HHHTTSCHHHHHHHHTTCTT---SCHHHHHHHHHHHHHHTCCSCHHHHHHT
T ss_pred HHHHCcCHHHHHHHhCCCCc---CCHHHHHHHHHHHHHHCcCCCHHHHHhc
Confidence 46788888888888887764 4566555555666678888777665543
No 10
>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}
Probab=39.16 E-value=40 Score=24.60 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=10.9
Q ss_pred CChhhHHHHHHhCCcccccc
Q 048759 92 IAKSKLGEFVKKYPQVLHAS 111 (442)
Q Consensus 92 ~s~~~i~~lv~~~P~lL~~~ 111 (442)
++.+++..++..+|.++-+.
T Consensus 74 ls~~~~i~ll~~~P~LikRP 93 (114)
T d1z3ea1 74 MPLQDLYRLINEHPGLLRRP 93 (114)
T ss_dssp SBHHHHHHHHHHCGGGBCSC
T ss_pred hhhHHHHHHHHhChhheeCC
Confidence 34455555566666655444
No 11
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=37.55 E-value=8.3 Score=24.01 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=24.1
Q ss_pred hhHHHHHHHHH-hcCCChhHHHHHHhhcCcc
Q 048759 294 HVIMKSVEFLL-GRGIPSGDLAKMVVQCPQL 323 (442)
Q Consensus 294 ~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~i 323 (442)
++.-.+...|. ++|++....+++|..||.+
T Consensus 13 ~k~H~n~~~L~~~F~ip~~vAr~IV~~C~~C 43 (46)
T d1k6ya1 13 EKYHSNWRAMASDFNLPPVVAKEIVASCDKC 43 (46)
T ss_dssp HHHCCCHHHHHHHHTCCHHHHHHHHHHCTTC
T ss_pred HHHhcCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34445677787 6899999999999999975
No 12
>d1zcza1 c.24.1.3 (A:1-157) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Thermotoga maritima [TaxId: 2336]}
Probab=36.61 E-value=14 Score=29.33 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=40.5
Q ss_pred ccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHHH
Q 048759 78 KNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSVA 157 (442)
Q Consensus 78 ~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v~ 157 (442)
..+.+....|.++|+. ++.. .-+-++|++.|++-.++.+ ++.+|.+|.-.+ ++|.|++.
T Consensus 12 ~~l~~la~~L~~~g~~-------------IisT------gGTak~L~~~Gi~v~~Vs~-~Tg~peil~gRv-KTLhp~i~ 70 (157)
T d1zcza1 12 EKYLDILRELHEKGWE-------------IWAS------SGTAKFLKSNGIEANDVST-ITGFENLLGGLV-KTLHPEIF 70 (157)
T ss_dssp GGGHHHHHHHHHTTCE-------------EEEC------HHHHHHHHHTTCCCEEGGG-GSCCCCGGGGTT-TTCCHHHH
T ss_pred cchHHHHHHHHHCCCE-------------EEEc------ChHHHHHHHhhhhhhHHHH-HhhHHHHHHhhh-ccchHHHH
Confidence 3566777777777763 2222 2466788888888888777 457888888777 57888753
No 13
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=36.55 E-value=32 Score=22.28 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=10.3
Q ss_pred hhcCChHHHHHHHHhCCc
Q 048759 233 SFGIRREKLASVIAQYPQ 250 (442)
Q Consensus 233 ~~G~~~~~i~~~i~~~P~ 250 (442)
..|++...+.+++...|.
T Consensus 11 ~agvS~sTVSr~l~~~~~ 28 (59)
T d1efaa1 11 YAGVSYQTVSRVVNQASH 28 (59)
T ss_dssp TTTSCHHHHHHHHTTCSS
T ss_pred HHCCCHHHHHHHHCCCCc
Confidence 356666666666654443
No 14
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.26 E-value=15 Score=24.29 Aligned_cols=36 Identities=25% Similarity=0.523 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 190 PLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 190 p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
..|..|.++||+++.+.+.|..+ . .+++..++||-+
T Consensus 21 ~~v~~L~~MGF~~~~a~~AL~~~----~----~n~e~A~~~Lls 56 (63)
T d1wgna_ 21 QCVETVVNMGYSYECVLRAMKKK----G----ENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH----C----SCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc----C----CCHHHHHHHHHh
Confidence 46777778888887777776654 1 245566777654
No 15
>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=35.99 E-value=32 Score=25.17 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=13.2
Q ss_pred cCChHHHHHHHHhCCcccccC
Q 048759 235 GIRREKLASVIAQYPQIIGLP 255 (442)
Q Consensus 235 G~~~~~i~~~i~~~P~iL~~~ 255 (442)
.++.+++..++..+|.++-..
T Consensus 72 ~ls~~e~i~~i~~~P~LikRP 92 (114)
T d1rw1a_ 72 DLDEAKAIELMLAQPSMIKRP 92 (114)
T ss_dssp TCCHHHHHHHHHHCGGGBCSC
T ss_pred cccHHHHHHHHHhCcceEeCC
Confidence 456666666666666666554
No 16
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=35.03 E-value=19 Score=29.63 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=16.6
Q ss_pred HHHHHHhCCCCCChHHHHHhhcCcccccccchhHHHHH
Q 048759 119 VVKFLRGLDVEKEDIGYVLMKYPELLGFKLEGTMSTSV 156 (442)
Q Consensus 119 ~v~fL~~lG~~~~~i~~il~~~P~lL~~s~e~~l~~~v 156 (442)
+-.||++.|++-.++.++ +.+|.+|.-.+ ++|.|++
T Consensus 35 Tak~L~~~gi~v~~Vs~~-tg~peil~GRV-KTLhPkI 70 (197)
T d1g8ma1 35 TATALRDAGLPVRDVSDL-TGFPEMLGGRV-KTLHPAV 70 (197)
T ss_dssp HHHHHHHTTCCCEEHHHH-HSCCCBGGGTB-SSCSHHH
T ss_pred HHHHHHHhcccHHHHHhh-hcCHHHHHHHH-hhcccee
Confidence 334455555555555443 35555554444 2444443
No 17
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=34.99 E-value=23 Score=24.12 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 189 KPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 189 ~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
+..|.-|.+|||+.+...+.|..+- .+++..++||-+
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~A~~~Ll~ 66 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAAD--------DDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHT--------SCHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 4578888899999888777777652 356677777753
No 18
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=34.75 E-value=14 Score=25.27 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHH
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKS 340 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~ 340 (442)
..+.-|.+|||+.+.+.+++..+-. ++..-++||..
T Consensus 31 ~~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~Av~~Lls 66 (73)
T d1wiva_ 31 SSVDTLLSFGFAEDVARKALKASGG-------DIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTTS-------CHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHcCC-------CHHHHHHHHHc
Confidence 4577788899999998888877622 45556666653
No 19
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.65 E-value=9.4 Score=25.41 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHH
Q 048759 297 MKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKS 340 (442)
Q Consensus 297 ~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~ 340 (442)
++.|+-|.+|||+.+++.+++..+= .++..-++||..
T Consensus 20 e~~v~~L~~MGF~~~~a~~AL~~~~-------~n~e~A~~~Lls 56 (63)
T d1wgna_ 20 RQCVETVVNMGYSYECVLRAMKKKG-------ENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC-------SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC-------CCHHHHHHHHHh
Confidence 3568888899999999887776642 145556677764
No 20
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=34.48 E-value=27 Score=27.98 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=13.3
Q ss_pred hhHHHHHhhcCChHHHHHHHH
Q 048759 226 PNVDCLISFGIRREKLASVIA 246 (442)
Q Consensus 226 ~~v~~L~~~G~~~~~i~~~i~ 246 (442)
.-++.|++.|+++.++..++.
T Consensus 139 ~~~~~L~~~g~s~~eivel~~ 159 (190)
T d2prra1 139 ADFEALREHGFTDEDAWDIAA 159 (190)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 345666677777777666543
No 21
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.73 E-value=15 Score=25.14 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHH
Q 048759 297 MKSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKS 340 (442)
Q Consensus 297 ~~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~ 340 (442)
+..++-|.+|||+.++..+++..+-. ++..-++||..
T Consensus 30 ee~i~~L~~MGF~~~~a~~AL~~~~~-------n~e~A~~~Ll~ 66 (73)
T d1vg5a_ 30 EEQIQKLVAMGFDRTQVEVALAAADD-------DLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTS-------CHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCC-------CHHHHHHHHHh
Confidence 34567788899998888777765422 44555666653
No 22
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=31.45 E-value=49 Score=23.77 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=11.7
Q ss_pred HHHHH-hcCCChhHHHHHHhh
Q 048759 300 VEFLL-GRGIPSGDLAKMVVQ 319 (442)
Q Consensus 300 ~~fl~-~~G~s~~~i~~~v~~ 319 (442)
.+||. ++||+.+.+...+.+
T Consensus 82 ~~fL~~e~~F~~~rv~~~l~k 102 (105)
T d1rxwa1 82 IEFLCEEHDFSRERVEKALEK 102 (105)
T ss_dssp HHHHTTTTCCCHHHHHHHHGG
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 45554 567776666655543
No 23
>d1efaa1 a.35.1.5 (A:2-60) Lac repressor (LacR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=30.27 E-value=47 Score=21.43 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=18.7
Q ss_pred HhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHHhcCCChhHHHHH
Q 048759 269 LKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLLGRGIPSGDLAKM 316 (442)
Q Consensus 269 ~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~~~G~s~~~i~~~ 316 (442)
+..|++...+-+++...|. .|+++.+.-.+...++|+....+++.
T Consensus 10 ~~agvS~sTVSr~l~~~~~---vs~~tr~rI~~~a~~lgY~pn~~Ar~ 54 (59)
T d1efaa1 10 EYAGVSYQTVSRVVNQASH---VSAKTREKVEAAMAELNYIPNRVAQQ 54 (59)
T ss_dssp HTTTSCHHHHHHHHTTCSS---CCTHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHCCCHHHHHHHHCCCCc---CCHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 3444555444444444332 23333333333333445544444433
No 24
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.94 E-value=33 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHhcchhcccCcccchhhhHHHHHh
Q 048759 189 KPLVDYLVSLGLPIKILARMLEKRVYILGYDLEETVKPNVDCLIS 233 (442)
Q Consensus 189 ~p~v~~L~~lG~~~~~i~~~l~~~P~il~~s~e~~l~~~v~~L~~ 233 (442)
...|.-|.++||+++...+.|+.+- .++...++||-+
T Consensus 30 ~~~i~~L~~MGF~~~~a~~AL~~~~--------~n~e~Av~~Lls 66 (73)
T d1wiva_ 30 QSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHcC--------CCHHHHHHHHHc
Confidence 3467788888998888888777652 355567777753
No 25
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=28.63 E-value=40 Score=22.72 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=28.5
Q ss_pred HhcCCChhHHHHHHHhcccccchhhhhHHHHHHHHH---hcCCChhHHHHHHhhcCcccc
Q 048759 269 LKLKIDPDEFAQVVEKMPQVVSLNQHVIMKSVEFLL---GRGIPSGDLAKMVVQCPQLIA 325 (442)
Q Consensus 269 ~~lG~~~~~v~~~i~~~P~il~~s~~~l~~k~~fl~---~~G~s~~~i~~~v~~~P~iL~ 325 (442)
..+|+++.++-++ .+.+-+++..+. ++|...+|+.++-++.-.+|+
T Consensus 28 ~amGv~esqiSRw-----------K~~f~~q~smlLAvLE~GV~D~ema~Lak~vA~~LT 76 (78)
T d1zs4a1 28 EAVGVDKSQISRW-----------KRDWIPKFSMLLAVLEWGVVDDDMARLARQVAAILT 76 (78)
T ss_dssp HHHTSCHHHHHHH-----------HHHTHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHhCCCHHHHHHH-----------HHhhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHh
Confidence 5567776666554 223335554443 688888888877776665554
No 26
>d1g8ma1 c.24.1.3 (A:4-200) IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=27.11 E-value=17 Score=29.89 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=47.7
Q ss_pred CccHHHHHHHHHHHHHCCCCccccccCCccccccccccchHHHHHHHHcCCChhhHHHHHHhCCccccccccccHHHHH
Q 048759 42 PSTIEVMEERVMFLQKLGLTIDDINEYPLMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFVKKYPQVLHASVVVELMPVV 120 (442)
Q Consensus 42 ~~~~~~~~~~l~~L~~lG~s~~~i~~~P~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv~~~P~lL~~~~~~~l~~~v 120 (442)
.++-..+.+....|.++|+. ++.. .-+-.||++.|+...++.++ ..+|.++.-++ ++|.|++
T Consensus 9 VsDK~~l~~la~~L~~~g~~---------IisT------gGTak~L~~~gi~v~~Vs~~-tg~peil~GRV-KTLhPkI 70 (197)
T d1g8ma1 9 VSEKAGLVEFARSLNALGLG---------LIAS------GGTATALRDAGLPVRDVSDL-TGFPEMLGGRV-KTLHPAV 70 (197)
T ss_dssp ESCCTTHHHHHHHHHHTTCE---------EEEC------HHHHHHHHHTTCCCEEHHHH-HSCCCBGGGTB-SSCSHHH
T ss_pred eecccCHHHHHHHHHHCCCE---------EEEC------cHHHHHHHHhcccHHHHHhh-hcCHHHHHHHH-hhcccee
Confidence 34445567778889999976 2222 23678999999999999995 69999999888 4888886
No 27
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.68 E-value=27 Score=22.88 Aligned_cols=38 Identities=5% Similarity=0.134 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCChhHHHHHHhhcCcccccChhhhHhHHHHHHHHh
Q 048759 298 KSVEFLLGRGIPSGDLAKMVVQCPQLIACRVELMKNSFYFFKSEM 342 (442)
Q Consensus 298 ~k~~fl~~~G~s~~~i~~~v~~~P~iL~~S~e~l~~r~~fL~~~m 342 (442)
..++-|.+|||+.+...+++..+- ..+..-++||.+..
T Consensus 11 ~~v~~L~~MGF~~~~a~~AL~~~~-------~~~e~A~~wL~~~~ 48 (63)
T d1wjia_ 11 KALKHITEMGFSKEASRQALMDNG-------NNLEAALNVLLTSN 48 (63)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHTT-------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC-------CCHHHHHHHHHHCC
Confidence 457778899999999988877662 25666788888654
No 28
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=26.48 E-value=13 Score=23.04 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=23.9
Q ss_pred hhHHHHHHHHH-hcCCChhHHHHHHhhcCcc
Q 048759 294 HVIMKSVEFLL-GRGIPSGDLAKMVVQCPQL 323 (442)
Q Consensus 294 ~~l~~k~~fl~-~~G~s~~~i~~~v~~~P~i 323 (442)
++.-.+...|. ++|++....+++|..||.+
T Consensus 13 ~k~H~N~~~L~~~F~lp~~vAr~IV~~C~~C 43 (46)
T d1e0ea_ 13 EKYHSNVKELSHKFGIPNLVARQIVNSCAQC 43 (46)
T ss_dssp HHHCCCHHHHHHHTCCCHHHHHHHHHHCHHH
T ss_pred HHHccCHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44456677888 6999999999999999865
No 29
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=25.43 E-value=18 Score=23.53 Aligned_cols=11 Identities=9% Similarity=0.066 Sum_probs=5.7
Q ss_pred HHhCCChhhHh
Q 048759 340 SEMGRPIKELI 350 (442)
Q Consensus 340 ~~mg~~~~~v~ 350 (442)
+.+|+++++++
T Consensus 53 ~~l~v~~~~Ll 63 (66)
T d2r1jl1 53 KALQCSPDYLL 63 (66)
T ss_dssp HHTTSCHHHHH
T ss_pred HHhCCCHHHHh
Confidence 34555555543
No 30
>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}
Probab=23.37 E-value=46 Score=18.53 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHh
Q 048759 297 MKSVEFLLGRGIPSGDLAKMVV 318 (442)
Q Consensus 297 ~~k~~fl~~~G~s~~~i~~~v~ 318 (442)
..|+.-+.+|||+.-+..+.+.
T Consensus 3 nskiaqlvsmgfdpleaaqald 24 (38)
T d1z96a1 3 NSKIAQLVSMGFDPLEAAQALD 24 (38)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred chHHHHHHHcCCCHHHHHHHHh
Confidence 4677778888888877766554
No 31
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=23.36 E-value=21 Score=23.75 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=14.9
Q ss_pred cccCCeecCCCCCCCCCcccCCcc
Q 048759 409 FCIGGKLVLPGSEVVSDEEDESDD 432 (442)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~ 432 (442)
.-++|+-.++|.+..+++|++++|
T Consensus 39 ~W~~e~y~Ip~~~~~~~~~~~~~~ 62 (65)
T d1lv3a_ 39 EWAAEEKRIPSSGDLSESDDWSEE 62 (65)
T ss_dssp CSSSSSCCCCSSSCCSSSCSCSSC
T ss_pred HHhcCCcccCCCCCCCcccCcccc
Confidence 346677777777666555555544
No 32
>d1uxda_ a.35.1.5 (A:) Fructose repressor (FruR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.92 E-value=52 Score=21.14 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=8.9
Q ss_pred hcCChHHHHHHHHhCCc
Q 048759 234 FGIRREKLASVIAQYPQ 250 (442)
Q Consensus 234 ~G~~~~~i~~~i~~~P~ 250 (442)
+|++...+.+++...|.
T Consensus 10 agvS~sTVSrvLn~~~~ 26 (59)
T d1uxda_ 10 AGVSRTTASYVINGKAK 26 (59)
T ss_dssp HTSCTTHHHHHHHTCGG
T ss_pred HCcCHHHHHHHHcCCCC
Confidence 45555555555554443
No 33
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}
Probab=22.71 E-value=55 Score=23.76 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCC-cccccc-CC-ccccccccccchHHHHHHHHcCCChhhHHHHH
Q 048759 49 EERVMFLQKLGLT-IDDINE-YP-LMLGCSMRKNMIPVFSYLEKIGIAKSKLGEFV 101 (442)
Q Consensus 49 ~~~l~~L~~lG~s-~~~i~~-~P-~ll~~~~~~~l~~~l~~L~~lG~s~~~i~~lv 101 (442)
..+++|+++.|+= |+.... +- +.-... .-.....+.+|+++|++-++|..++
T Consensus 17 ~~tlR~Ye~~GLl~P~~~r~~~gyR~Y~~~-~l~~l~~I~~lr~~g~sl~eIk~~l 71 (118)
T d1r8ea1 17 IKALRYYDKIDLFKPAYVDPDTSYRYYTDS-QLIHLDLIKSLKYIGTPLEEMKKAQ 71 (118)
T ss_dssp HHHHHHHHHTTSSCCSEECTTTCCEEEETG-GGGHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHcCCcccccccCCCCcccccHH-HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 3567777777753 443321 11 111111 1122345667778888888887654
No 34
>d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=21.38 E-value=38 Score=22.71 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=10.0
Q ss_pred HHHHHHH-hcCCChhHHHHHH
Q 048759 298 KSVEFLL-GRGIPSGDLAKMV 317 (442)
Q Consensus 298 ~k~~fl~-~~G~s~~~i~~~v 317 (442)
.++.-++ ..|+|.++++..+
T Consensus 11 ~~lr~~R~~~g~sq~~lA~~~ 31 (79)
T d1y9qa1 11 NQLKNLRKSRGLSLDATAQLT 31 (79)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH
Confidence 4444444 3555555555433
Done!