BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>048760
MSKPNTNRRPSGSGRTNLASCIVATIFLIFVVIVILIVFFTVFKPKEPKISVTSIQLPSF
SISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIPAGKIAAGQTQYMA
ATFAVQSFPISTAAGASALVGAPVTPSGFPGAGLPNNGFRVGPTMQIESRMDMSGRVRVL
HFFTHHVNAKAGCRVEISVNDGSVLGFHC

High Scoring Gene Products

Symbol, full name Information P value
AT1G64450 protein from Arabidopsis thaliana 4.8e-62
AT4G23930 protein from Arabidopsis thaliana 1.5e-42
AT3G54200 protein from Arabidopsis thaliana 1.7e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  048760
        (209 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2014250 - symbol:AT1G64450 species:3702 "Arabi...   435  4.8e-62   2
TAIR|locus:2138136 - symbol:AT4G23930 "AT4G23930" species...   450  1.5e-42   1
TAIR|locus:2080320 - symbol:AT3G54200 "AT3G54200" species...   109  1.7e-08   2


>TAIR|locus:2014250 [details] [associations]
            symbol:AT1G64450 species:3702 "Arabidopsis thaliana"
            [GO:0005576 "extracellular region" evidence=ISM] [GO:0048451 "petal
            formation" evidence=RCA] [GO:0048453 "sepal formation"
            evidence=RCA] EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC009519
            eggNOG:NOG12793 EMBL:AC066689 EMBL:BT010542 EMBL:AK227872
            IPI:IPI00526273 PIR:E96668 RefSeq:NP_176626.1 UniGene:At.36000
            ProteinModelPortal:Q9SGW9 PRIDE:Q9SGW9 EnsemblPlants:AT1G64450.1
            GeneID:842753 KEGG:ath:AT1G64450 TAIR:At1g64450
            HOGENOM:HOG000153464 InParanoid:Q9SGW9 OMA:IESKMEL PhylomeDB:Q9SGW9
            ProtClustDB:CLSN2914628 Genevestigator:Q9SGW9 Uniprot:Q9SGW9
        Length = 342

 Score = 435 (158.2 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 89/154 (57%), Positives = 108/154 (70%)

Query:     1 MSKPNTNRRPSGSGRTNLASCIVAXXXXXXXXXXXXXXXXXXXKPKEPKISVTSIQLPSF 60
             M+KP+  RR   SGRTNLASC VA                   KPK+PKISV ++QLPSF
Sbjct:     1 MAKPHDRRR--SSGRTNLASCAVATVFLLILLVVLLVVYFTVFKPKDPKISVNAVQLPSF 58

Query:    61 SISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIPAGKIAAGQTQYMA 120
             ++SNNT NF+FSQYV ++NPN+A FSHYDS+IQL+YSG+QVGFMFIPAGKI +G+ QYMA
Sbjct:    59 AVSNNTANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMA 118

Query:   121 ATFAVQSFPIST-AAGASALVGAPVTPSG--FPG 151
             ATF V SFPIS  ++ A + V A V P     PG
Sbjct:   119 ATFTVHSFPISPPSSSAISTVSAAVIPDSPIIPG 152

 Score = 217 (81.4 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
 Identities = 46/79 (58%), Positives = 55/79 (69%)

Query:   141 GAPVTPSGFPGAG------LPNNGF----RVGPTMQIESRMDMSGRVRVLHFFTHHVNAK 190
             G P TP G  G G        N GF    RVGPTM+IES+M+++GRV+VLH FTHHV AK
Sbjct:   264 GFPGTPFGGGGTGPTLGDGYANPGFGYGNRVGPTMEIESKMELAGRVKVLHVFTHHVVAK 323

Query:   191 AGCRVEISVNDGSVLGFHC 209
             + CRV +S+ DGSVLGFHC
Sbjct:   324 SDCRVTVSIADGSVLGFHC 342

 Score = 45 (20.9 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query:   146 PSGFPGAGLPNNGFRVGPTM 165
             P GFPG   P  G   GPT+
Sbjct:   262 PPGFPGT--PFGGGGTGPTL 279

 Score = 40 (19.1 bits), Expect = 2.0e-43, Sum P(2) = 2.0e-43
 Identities = 9/14 (64%), Positives = 9/14 (64%)

Query:   146 PSGFPGAGLPNNGF 159
             P GFPG G P  GF
Sbjct:   253 PPGFPGIGGPP-GF 265

 Score = 35 (17.4 bits), Expect = 6.7e-43, Sum P(2) = 6.7e-43
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query:   141 GAPVTPSGFPGAGLPNNGFRVGP 163
             GAPV P        P N   +GP
Sbjct:   231 GAPVIPRNPNPPVFPGNPRSMGP 253


>TAIR|locus:2138136 [details] [associations]
            symbol:AT4G23930 "AT4G23930" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR004864 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL078468 EMBL:AL161560 Pfam:PF03168
            EMBL:BT002843 EMBL:BT004441 IPI:IPI00543341 PIR:T08912
            RefSeq:NP_194124.1 UniGene:At.32395 ProteinModelPortal:Q9T0A8
            EnsemblPlants:AT4G23930.1 GeneID:828493 KEGG:ath:AT4G23930
            TAIR:At4g23930 eggNOG:NOG284099 HOGENOM:HOG000084096
            InParanoid:Q9T0A8 OMA:YMATSFT PhylomeDB:Q9T0A8
            ProtClustDB:CLSN2686015 Genevestigator:Q9T0A8 Uniprot:Q9T0A8
        Length = 187

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 88/194 (45%), Positives = 133/194 (68%)

Query:    16 TNLASCIVAXXXXXXXXXXXXXXXXXXXKPKEPKISVTSIQLPSFSISNNTVNFTFSQYV 75
             +NLASC VA                   +P++P+ISVTS+++PSFS++N++V+FTFSQ+ 
Sbjct:     6 SNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSSVSFTFSQFS 65

Query:    76 TIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIPAGKIAAGQTQYMAATFAVQSFPISTAAG 135
              ++NPN+AAFSHY++ IQL Y G+++G+ F+PAG+I +G+T+ M ATF+VQSFP+  AA 
Sbjct:    66 AVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPL--AAA 123

Query:   136 ASALVGAPVTPSGFPGAGLPNNGFRVGPTMQIESRMDMSGRVRVLHFFTHHVNAKAGCRV 195
             +S+ + A    + F       N  R G T++IES+++M+GRVRVL  FTH + AK  CR+
Sbjct:   124 SSSQISA----AQF------QNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRI 173

Query:   196 EISVNDGSVLGFHC 209
              IS +DGS++   C
Sbjct:   174 AISSSDGSIVAVRC 187


>TAIR|locus:2080320 [details] [associations]
            symbol:AT3G54200 "AT3G54200" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0046658 "anchored to plasma membrane"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR004864
            GO:GO:0009506 EMBL:CP002686 GO:GO:0046658 EMBL:AL132957
            Pfam:PF03168 EMBL:AK229134 IPI:IPI00521889 PIR:T47579
            RefSeq:NP_190988.1 UniGene:At.27525 ProteinModelPortal:Q9M386
            STRING:Q9M386 PRIDE:Q9M386 EnsemblPlants:AT3G54200.1 GeneID:824587
            KEGG:ath:AT3G54200 TAIR:At3g54200 InParanoid:Q9M386 OMA:NASSMET
            PhylomeDB:Q9M386 ProtClustDB:CLSN2685083 Genevestigator:Q9M386
            Uniprot:Q9M386
        Length = 235

 Score = 109 (43.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 29/91 (31%), Positives = 48/91 (52%)

Query:    44 KPKEPKISVTSIQLPSFSISNNTV------NFTFSQYVTIKNPNKAAFSHYDSTIQLI-Y 96
             KPK P  ++ S+ +     S N +      N T +  +++KNPN+  FS YDS+  L+ Y
Sbjct:    78 KPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNVDLSLKNPNRIGFS-YDSSSALLNY 136

Query:    97 SGSQVGFMFIPAGKIAAGQTQYMAATFAVQS 127
              G  +G   +PA +IAA +T  +  T  + +
Sbjct:   137 RGQVIGEAPLPANRIAARKTVPLNITLTLMA 167

 Score = 70 (29.7 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query:   173 MSGRVRVLHFFTHHVNAKAGCRVEISVNDGSVLGFHC 209
             ++G+V VL  F   V + + C + ISV+D +V   HC
Sbjct:   193 VTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHC 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      209       190   0.00091  110 3  11 22  0.44    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  548 (58 KB)
  Total size of DFA:  137 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.79u 0.12s 17.91t   Elapsed:  00:00:01
  Total cpu time:  17.79u 0.12s 17.91t   Elapsed:  00:00:01
  Start:  Tue May 21 01:43:49 2013   End:  Tue May 21 01:43:50 2013

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