BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048760
         (209 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1C89|A Chain A, Nmr Structure Of Intramolecular Dimer Antifreeze Protein
           Rd3, 40 Sa Structures
 pdb|1C8A|A Chain A, Nmr Structure Of Intramolecular Dimer Antifreeze Protein
           Rd3, 40 Sa Structures
          Length = 134

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 120 AATFAVQSFPISTAAGASALVGAPVTPSGFPGAGLPN 156
           A+  A Q  PI+TA     +    VTP G P   +PN
Sbjct: 3   ASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPN 39


>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
           Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
 pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
           Staphylococcus Saprophyticus In P212121 Form
 pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
           Staphylococcus Saprophyticus In The Presence Of
           Cholesterol
          Length = 429

 Score = 27.3 bits (59), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 54  SIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTI-QLIYSGSQVGFMFIPAGKIA 112
           +I + S+  + NT  +TF+ YV I N  + +FS       +L+ +  Q     +P G   
Sbjct: 85  TIAIGSYDSATNTAKYTFTNYVDIYNNVRGSFSLLSWPFKELVTTDKQS----VPVGITV 140

Query: 113 AGQ--TQYMAATFAVQSFPI 130
           AG+  TQ +   +  ++ P+
Sbjct: 141 AGEDYTQNVIFNYGNRTVPV 160


>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
           Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
           Resolution
          Length = 446

 Score = 27.3 bits (59), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 7/80 (8%)

Query: 54  SIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTI-QLIYSGSQVGFMFIPAGKIA 112
           +I + S+  + NT  +TF+ YV I N  + +FS       +L+ +  Q     +P G   
Sbjct: 102 TIAIGSYDSATNTAKYTFTNYVDIYNNVRGSFSLLSWPFKELVTTDKQS----VPVGITV 157

Query: 113 AGQ--TQYMAATFAVQSFPI 130
           AG+  TQ +   +  ++ P+
Sbjct: 158 AGEDYTQNVIFNYGNRTVPV 177


>pdb|3NLA|A Chain A, Nmr Structure Of The N-Terminal Domain With A Linker
           Portion Of Antarctic Eel Pout Antifreeze Protein Rd3, 40
           Structures
 pdb|3RDN|A Chain A, Nmr Structure Of The N-Terminal Domain With A Linker
           Portion Of Antarctic Eel Pout Antifreeze Protein Rd3,
           Minimized Average Structure
          Length = 74

 Score = 26.9 bits (58), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 120 AATFAVQSFPISTAAGASALVGAPVTPSGFPGAGLPN 156
           A+  A Q  PI+TA     +    VTP G P   +PN
Sbjct: 4   ASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPN 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,542,151
Number of Sequences: 62578
Number of extensions: 196362
Number of successful extensions: 432
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 6
length of query: 209
length of database: 14,973,337
effective HSP length: 94
effective length of query: 115
effective length of database: 9,091,005
effective search space: 1045465575
effective search space used: 1045465575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)