BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048760
         (209 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P40853|GPHP_CUPNH Phosphoglycolate phosphatase, plasmid OS=Cupriavidus necator
           (strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
           GN=cbbZP PE=1 SV=2
          Length = 231

 Score = 30.8 bits (68), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 140 VGAPVTP----SGFPGAGLPNNGFRVGPTMQIESRMDMSGRVRVLHFFTHHVNAKAG 192
           +G+P  P    +GF G G+PN   RV  T Q+  R+D +  V + H      N + G
Sbjct: 37  LGSPALPFGTVAGFIGRGVPNLVRRVLETAQLAPRVDATDAVAMFHRHYADTNGRLG 93


>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
          Length = 416

 Score = 30.4 bits (67), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 49  KISVTSIQLPSFSI-SNNTVNFTFSQYVTIKNPNKAAFSHYDS-TIQLIYSGSQVGFMFI 106
           K  V   +L  F + SNN + ++ S  ++I+N   +   HYD     + Y   ++G + +
Sbjct: 8   KFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPM 67

Query: 107 PAGKIAAGQTQYMAATFAVQSF 128
           P   + +  T  + A F  Q+ 
Sbjct: 68  PLFYLGSKNTMLLRALFEGQTL 89


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.135    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,586,641
Number of Sequences: 539616
Number of extensions: 2890169
Number of successful extensions: 8466
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8463
Number of HSP's gapped (non-prelim): 10
length of query: 209
length of database: 191,569,459
effective HSP length: 112
effective length of query: 97
effective length of database: 131,132,467
effective search space: 12719849299
effective search space used: 12719849299
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)