Query 048760
Match_columns 209
No_of_seqs 116 out of 762
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 12:54:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 9.1E-38 2E-42 260.0 26.6 168 21-209 40-213 (219)
2 PF03168 LEA_2: Late embryogen 99.2 5.8E-11 1.3E-15 86.1 6.7 96 74-193 1-99 (101)
3 smart00769 WHy Water Stress an 98.1 4.8E-05 1E-09 55.6 9.8 61 66-126 12-73 (100)
4 PF07092 DUF1356: Protein of u 97.4 0.0042 9.1E-08 52.3 12.5 82 44-125 97-181 (238)
5 PF12751 Vac7: Vacuolar segreg 97.2 0.0012 2.5E-08 59.0 6.9 80 12-96 296-375 (387)
6 COG5608 LEA14-like dessication 97.1 0.075 1.6E-06 41.8 15.2 81 46-130 31-112 (161)
7 PLN03160 uncharacterized prote 96.1 0.11 2.4E-06 43.4 11.4 49 9-57 31-81 (219)
8 TIGR02588 conserved hypothetic 94.0 0.84 1.8E-05 34.6 9.4 71 22-98 6-78 (122)
9 PF14155 DUF4307: Domain of un 87.6 9.7 0.00021 28.3 10.5 30 92-124 68-99 (112)
10 TIGR03602 streptolysinS bacter 85.0 0.12 2.7E-06 32.7 -1.5 14 9-23 22-35 (56)
11 PRK10893 lipopolysaccharide ex 80.9 29 0.00063 28.3 10.8 45 29-74 11-66 (192)
12 PF09624 DUF2393: Protein of u 69.1 35 0.00076 26.2 7.7 62 34-102 32-95 (149)
13 PRK05529 cell division protein 65.0 11 0.00023 32.1 4.4 14 47-60 58-71 (255)
14 PF06072 Herpes_US9: Alphaherp 64.8 0.88 1.9E-05 30.1 -1.8 10 32-41 50-59 (60)
15 PF08113 CoxIIa: Cytochrome c 44.1 13 0.00029 21.6 1.0 18 24-41 7-24 (34)
16 PRK06531 yajC preprotein trans 42.0 12 0.00026 28.1 0.8 14 36-49 13-26 (113)
17 PF11322 DUF3124: Protein of u 40.9 1.6E+02 0.0034 22.6 6.7 50 64-119 18-73 (125)
18 PF10907 DUF2749: Protein of u 40.5 35 0.00075 23.0 2.7 17 30-46 12-28 (66)
19 PF11797 DUF3324: Protein of u 39.0 1.7E+02 0.0038 22.2 7.2 66 47-119 27-94 (140)
20 PF13473 Cupredoxin_1: Cupredo 37.4 53 0.0011 23.4 3.6 37 47-83 17-55 (104)
21 PF05545 FixQ: Cbb3-type cytoc 37.3 14 0.00031 23.0 0.5 20 28-47 15-34 (49)
22 COG1580 FliL Flagellar basal b 36.6 1.8E+02 0.0038 23.1 6.8 15 29-43 28-42 (159)
23 PF00927 Transglut_C: Transglu 36.5 1.6E+02 0.0034 21.0 6.6 59 66-124 12-75 (107)
24 PF06835 LptC: Lipopolysacchar 36.4 1.9E+02 0.0041 21.9 7.7 27 67-93 51-77 (176)
25 PF11395 DUF2873: Protein of u 35.5 16 0.00034 21.9 0.4 16 29-44 18-33 (43)
26 PF14927 Neurensin: Neurensin 35.4 48 0.001 25.8 3.2 13 29-41 54-67 (140)
27 PF06092 DUF943: Enterobacteri 34.3 23 0.00051 28.1 1.4 17 30-46 13-29 (157)
28 PF09911 DUF2140: Uncharacteri 34.2 59 0.0013 26.4 3.8 19 30-48 13-31 (187)
29 PF14283 DUF4366: Domain of un 34.2 37 0.0008 28.4 2.6 19 32-50 172-190 (218)
30 PRK05696 fliL flagellar basal 33.5 1.8E+02 0.0039 22.9 6.5 14 86-99 87-100 (170)
31 PF04478 Mid2: Mid2 like cell 32.5 46 0.001 26.3 2.7 43 30-89 62-104 (154)
32 PF12321 DUF3634: Protein of u 31.7 18 0.00038 27.0 0.3 18 35-52 9-28 (108)
33 PF02009 Rifin_STEVOR: Rifin/s 31.4 15 0.00034 32.1 -0.1 16 29-44 265-280 (299)
34 PF15012 DUF4519: Domain of un 31.1 52 0.0011 21.5 2.4 17 30-46 40-56 (56)
35 PF04790 Sarcoglycan_1: Sarcog 31.1 3.4E+02 0.0074 23.3 8.4 17 67-83 84-100 (264)
36 PF11906 DUF3426: Protein of u 30.9 2.4E+02 0.0051 21.3 8.6 56 51-106 49-106 (149)
37 COG4736 CcoQ Cbb3-type cytochr 30.5 18 0.00039 24.0 0.2 20 28-47 15-34 (60)
38 TIGR00996 Mtu_fam_mce virulenc 29.8 1E+02 0.0022 26.3 4.7 15 29-43 11-25 (291)
39 PTZ00382 Variant-specific surf 28.8 40 0.00087 24.4 1.7 14 30-43 78-91 (96)
40 COG4698 Uncharacterized protei 27.8 46 0.001 27.1 2.1 31 34-64 25-58 (197)
41 PF09307 MHC2-interact: CLIP, 27.8 20 0.00043 26.9 0.0 10 35-44 48-57 (114)
42 PF02468 PsbN: Photosystem II 25.9 64 0.0014 19.9 2.0 18 28-45 12-29 (43)
43 PRK13183 psbN photosystem II r 25.8 83 0.0018 19.7 2.5 17 29-45 16-32 (46)
44 CHL00031 psbT photosystem II p 25.1 50 0.0011 19.2 1.3 22 29-50 8-29 (33)
45 COG1589 FtsQ Cell division sep 24.9 75 0.0016 27.1 3.0 31 29-59 39-69 (269)
46 PF06024 DUF912: Nucleopolyhed 24.7 1.1E+02 0.0024 22.1 3.5 11 34-44 78-88 (101)
47 PRK11875 psbT photosystem II r 24.6 41 0.0009 19.2 0.9 22 29-50 8-29 (31)
48 COG3121 FimC P pilus assembly 24.2 1.4E+02 0.0031 25.0 4.5 44 74-122 166-209 (235)
49 PF11770 GAPT: GRB2-binding ad 23.8 84 0.0018 24.8 2.8 23 28-50 19-41 (158)
50 cd01324 cbb3_Oxidase_CcoQ Cyto 23.7 38 0.00083 21.3 0.8 18 30-47 18-35 (48)
51 PF03923 Lipoprotein_16: Uncha 22.9 3.6E+02 0.0079 20.8 6.8 45 46-90 68-118 (159)
52 PF07705 CARDB: CARDB; InterP 22.9 2.5E+02 0.0054 18.9 6.9 53 69-125 19-71 (101)
53 PF13396 PLDc_N: Phospholipase 22.5 1E+02 0.0022 18.5 2.6 18 29-46 29-46 (46)
54 CHL00020 psbN photosystem II p 22.0 1E+02 0.0023 19.0 2.4 17 29-45 13-29 (43)
55 PF09677 TrbI_Ftype: Type-F co 21.9 66 0.0014 23.9 1.8 32 21-52 4-35 (111)
56 PF15099 PIRT: Phosphoinositid 20.6 65 0.0014 24.6 1.6 33 21-53 51-83 (129)
57 PHA03049 IMV membrane protein; 20.3 34 0.00073 23.2 -0.0 19 27-45 7-25 (68)
58 KOG3950 Gamma/delta sarcoglyca 20.2 69 0.0015 27.5 1.8 20 66-85 105-124 (292)
59 PRK05886 yajC preprotein trans 20.1 38 0.00082 25.2 0.2 15 34-48 13-27 (109)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=9.1e-38 Score=259.97 Aligned_cols=168 Identities=27% Similarity=0.470 Sum_probs=144.9
Q ss_pred hhHHHHHHHHHHHHHHheeeeEEeeCCCEEEEeeEEEeeEEeeC-----CcEEEEEEEEEEEECCCCeeEEEEcc-EEEE
Q 048760 21 CIVATIFLIFVVIVILIVFFTVFKPKEPKISVTSIQLPSFSISN-----NTVNFTFSQYVTIKNPNKAAFSHYDS-TIQL 94 (209)
Q Consensus 21 c~~~~l~llll~~~~~li~~lv~rP~~P~~~v~~~~l~~f~~~~-----~~l~~~l~~~v~v~NPN~~~~~yy~~-~~~v 94 (209)
|.|.+++++++++++++++|++||||+|+|+|+++++++|++++ ..+|++++++++++|||. .++||+. ++.+
T Consensus 40 ~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v 118 (219)
T PLN03160 40 CGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTI 118 (219)
T ss_pred HHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEE
Confidence 33333444566888899999999999999999999999999864 268888999999999999 5677775 7999
Q ss_pred EECCceEeeEEcCCceecCCceEEEEEEEEEeeeeecccccccccccCCCCCCCCCCCCCCCCCcccCCEEEEEEEEEEE
Q 048760 95 IYSGSQVGFMFIPAGKIAAGQTQYMAATFAVQSFPISTAAGASALVGAPVTPSGFPGAGLPNNGFRVGPTMQIESRMDMS 174 (209)
Q Consensus 95 ~Y~g~~lg~~~vp~f~q~~~~~~~v~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~g~v~l~v~~~~~ 174 (209)
+|+|+.+|++.+|+|+|++|+++.+++++.+....+.++ ..| .+ |.++|.++|+++++++
T Consensus 119 ~Y~g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~~---~~L------~~-----------D~~~G~v~l~~~~~v~ 178 (219)
T PLN03160 119 YYGGTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILSV---PGL------LT-----------DISSGLLNMNSYTRIG 178 (219)
T ss_pred EECCEEEEEEEcCCcccCCCCeEEEEEEEEEEeceeccc---hhH------HH-----------HhhCCeEEEEEEEEEE
Confidence 999999999999999999999999999988777655432 235 22 3568999999999999
Q ss_pred EEEEEEEEEEeeeeEEEEeEEEEEcCCCeEeeeeC
Q 048760 175 GRVRVLHFFTHHVNAKAGCRVEISVNDGSVLGFHC 209 (209)
Q Consensus 175 ~r~~v~~~~~~~~~~~v~C~~~v~~~~~~v~~~~C 209 (209)
||++++++++++++++++|++.|+.++.++++++|
T Consensus 179 gkVkv~~i~k~~v~~~v~C~v~V~~~~~~i~~~~C 213 (219)
T PLN03160 179 GKVKILKIIKKHVVVKMNCTMTVNITSQAIQGQKC 213 (219)
T ss_pred EEEEEEEEEEEEEEEEEEeEEEEECCCCEEeccEe
Confidence 99999999999999999999999999999999999
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.18 E-value=5.8e-11 Score=86.05 Aligned_cols=96 Identities=20% Similarity=0.296 Sum_probs=67.8
Q ss_pred EEEEECCCCeeEEEEcc-EEEEEECCceEe-eEEcCCceecCCceEEEEEEEEEeeeeecccccccccccCCCCCCCCCC
Q 048760 74 YVTIKNPNKAAFSHYDS-TIQLIYSGSQVG-FMFIPAGKIAAGQTQYMAATFAVQSFPISTAAGASALVGAPVTPSGFPG 151 (209)
Q Consensus 74 ~v~v~NPN~~~~~yy~~-~~~v~Y~g~~lg-~~~vp~f~q~~~~~~~v~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 151 (209)
+++++|||. ..++|+. ...++|+|..+| ....++|+|++++++.+.+.+..+...+.. .+ .+
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l~~-----~l------~~---- 64 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDLPR-----LL------KD---- 64 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHHHH-----HH------HH----
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHHHH-----HH------Hh----
Confidence 579999999 8888876 799999999999 788999999999999999988877655422 13 11
Q ss_pred CCCCCCCcccCCEEEEEEEEEEEEEEEE-EEEEEeeeeEEEEe
Q 048760 152 AGLPNNGFRVGPTMQIESRMDMSGRVRV-LHFFTHHVNAKAGC 193 (209)
Q Consensus 152 ~~~~~~~~~~~g~v~l~v~~~~~~r~~v-~~~~~~~~~~~v~C 193 (209)
+. .+..++++..++++++++ +.+...++.+.++|
T Consensus 65 -------~~-~~~~~~~v~~~~~g~~~v~~~~~~~~~~v~~~~ 99 (101)
T PF03168_consen 65 -------LL-AGRVPFDVTYRIRGTFKVLGTPIFGSVRVPVSC 99 (101)
T ss_dssp -------HH-HTTSCEEEEEEEEEEEE-EE-TTTSCEEEEEEE
T ss_pred -------hh-ccccceEEEEEEEEEEEEcccceeeeEEEeEEe
Confidence 22 335557777788888985 44444445555555
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.08 E-value=4.8e-05 Score=55.61 Aligned_cols=61 Identities=18% Similarity=0.305 Sum_probs=55.8
Q ss_pred cEEEEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEEcC-CceecCCceEEEEEEEEEe
Q 048760 66 TVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIP-AGKIAAGQTQYMAATFAVQ 126 (209)
Q Consensus 66 ~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~l~~~ 126 (209)
.++.++.+.+.++|||....-+.+....++|+|..+|++..+ .+.+++++++.+.++++..
T Consensus 12 ~~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~ 73 (100)
T smart00769 12 GLEIEIVLKVKVQNPNPFPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVN 73 (100)
T ss_pred ceEEEEEEEEEEECCCCCccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEee
Confidence 578999999999999999888888889999999999999996 7999999999999998874
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.42 E-value=0.0042 Score=52.30 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=60.6
Q ss_pred eeCCCEEEEeeEEEeeEEeeC--CcEEEEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEEcCCc-eecCCceEEEE
Q 048760 44 KPKEPKISVTSIQLPSFSISN--NTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIPAG-KIAAGQTQYMA 120 (209)
Q Consensus 44 rP~~P~~~v~~~~l~~f~~~~--~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp~f-~q~~~~~~~v~ 120 (209)
-||.-.++-.++......++. +.+..++.-.+.+.|||.....-.+.++++.|....+|.+..... ..++++.+.+.
T Consensus 97 fPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NFy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~ 176 (238)
T PF07092_consen 97 FPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNFYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVN 176 (238)
T ss_pred eCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCEEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEE
Confidence 487766666555544444443 468899999999999997766656667888999999999887754 67888887777
Q ss_pred EEEEE
Q 048760 121 ATFAV 125 (209)
Q Consensus 121 ~~l~~ 125 (209)
.++..
T Consensus 177 ~tV~t 181 (238)
T PF07092_consen 177 YTVKT 181 (238)
T ss_pred EEeeE
Confidence 66554
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.17 E-value=0.0012 Score=59.04 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=45.8
Q ss_pred CCCCcceeehhHHHHHHHHHHHHHHheeeeEEeeCCCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEccE
Q 048760 12 GSGRTNLASCIVATIFLIFVVIVILIVFFTVFKPKEPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDST 91 (209)
Q Consensus 12 ~~~~~~~~cc~~~~l~llll~~~~~li~~lv~rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~~~ 91 (209)
++.|.+.++|++..++++|++|.++.+++..-+| --.|+=..+++.-. +.-..-|++.|.+.|||.....--+..
T Consensus 296 r~~~~r~~~c~~~~i~~lL~ig~~~gFv~AttKp---L~~v~v~~I~NVla--S~qELmfdl~V~A~NPn~~~V~I~d~d 370 (387)
T PF12751_consen 296 RSWFSRFASCIYLSILLLLVIGFAIGFVFATTKP---LTDVQVVSIQNVLA--SEQELMFDLTVEAFNPNWFTVTIDDMD 370 (387)
T ss_pred ccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcCcc---cccceEEEeeeeee--ccceEEEeeEEEEECCCeEEEEeccce
Confidence 5667788888887665544444333333333343 22222223333322 234578999999999998765555555
Q ss_pred EEEEE
Q 048760 92 IQLIY 96 (209)
Q Consensus 92 ~~v~Y 96 (209)
+.++-
T Consensus 371 ldIFA 375 (387)
T PF12751_consen 371 LDIFA 375 (387)
T ss_pred eeeEe
Confidence 65543
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.07 E-value=0.075 Score=41.82 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=61.6
Q ss_pred CCCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEEcC-CceecCCceEEEEEEEE
Q 048760 46 KEPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIP-AGKIAAGQTQYMAATFA 124 (209)
Q Consensus 46 ~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~l~ 124 (209)
++|.+.--.+..-.... ....+-.++.++|||....---+...+++-+|..+|++..- ++..++++...+++.+.
T Consensus 31 ~~p~ve~~ka~wGkvt~----s~~EiV~t~KiyNPN~fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~ 106 (161)
T COG5608 31 KKPGVESMKAKWGKVTN----SETEIVGTLKIYNPNPFPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLR 106 (161)
T ss_pred CCCCceEEEEEEEEEec----cceEEEEEEEecCCCCcceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEE
Confidence 46666655555544322 24678889999999998776666678888899999987764 69999999999999988
Q ss_pred Eeeeee
Q 048760 125 VQSFPI 130 (209)
Q Consensus 125 ~~~~~~ 130 (209)
.+...+
T Consensus 107 ~d~~~~ 112 (161)
T COG5608 107 LDNSKI 112 (161)
T ss_pred EehHHH
Confidence 776554
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=96.13 E-value=0.11 Score=43.39 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=32.0
Q ss_pred CCCCCCCcceeehhHHHHHHHHHHHHHHheeeeEEeeC--CCEEEEeeEEE
Q 048760 9 RPSGSGRTNLASCIVATIFLIFVVIVILIVFFTVFKPK--EPKISVTSIQL 57 (209)
Q Consensus 9 ~~~~~~~~~~~cc~~~~l~llll~~~~~li~~lv~rP~--~P~~~v~~~~l 57 (209)
++|++|++|++|++..++++++++++++++++-.=.|+ .-.++++++.+
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~ 81 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLEL 81 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeee
Confidence 34455666677777777777766667777776666666 56666766665
No 8
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=94.02 E-value=0.84 Score=34.65 Aligned_cols=71 Identities=11% Similarity=0.118 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHheeeeEE--eeCCCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEccEEEEEECC
Q 048760 22 IVATIFLIFVVIVILIVFFTVF--KPKEPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSG 98 (209)
Q Consensus 22 ~~~~l~llll~~~~~li~~lv~--rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g 98 (209)
+...+.++++++++.+++|.++ ++++|.+++......+- ....+-+-++++|--.....-......+.-.|
T Consensus 6 vt~~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~------~~gqyyVpF~V~N~gg~TAasV~V~geL~~~~ 78 (122)
T TIGR02588 6 VTFGISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM------QTGQYYVPFAIHNLGGTTAAAVNIRGELRQAG 78 (122)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE------eCCEEEEEEEEEeCCCcEEEEEEEEEEEccCC
Confidence 3444444566667766666655 66799998888766542 23456777888887755444333333333333
No 9
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=87.61 E-value=9.7 Score=28.33 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=17.1
Q ss_pred EEEEECCceEee--EEcCCceecCCceEEEEEEEE
Q 048760 92 IQLIYSGSQVGF--MFIPAGKIAAGQTQYMAATFA 124 (209)
Q Consensus 92 ~~v~Y~g~~lg~--~~vp~f~q~~~~~~~v~~~l~ 124 (209)
-.+.|++.++|. ..+|+ +..++..+...+.
T Consensus 68 rA~~~d~aeVGrreV~vp~---~~~~~~~~~v~v~ 99 (112)
T PF14155_consen 68 RALDYDGAEVGRREVLVPP---SGERTVRVTVTVR 99 (112)
T ss_pred EEEeCCCCEEEEEEEEECC---CCCcEEEEEEEEE
Confidence 345788889996 45555 3334444444444
No 10
>TIGR03602 streptolysinS bacteriocin protoxin, streptolysin S family. Members of this family are bacteriocin precursors. These small, ribosomally produced polypeptide precursors are extensively processed post-translationally. This family belongs to a class of heterocycle-containing bacteriocins, including streptolysin S from Streptococcus pyogenes, and related bacteriocins from Streptococcus iniae and Clostridium botulinum. Streptolysin S is hemolytic. Bacteriocin genes in general are small and highly diverse, with odd sequence composition, and are easily missed by many gene-finding programs.
Probab=85.02 E-value=0.12 Score=32.70 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=7.5
Q ss_pred CCCCCCCcceeehhH
Q 048760 9 RPSGSGRTNLASCIV 23 (209)
Q Consensus 9 ~~~~~~~~~~~cc~~ 23 (209)
.| ++||||++||.+
T Consensus 22 ap-ggcccccc~cc~ 35 (56)
T TIGR03602 22 AP-GGCCCCCCCCCF 35 (56)
T ss_pred cC-CCeEEEeccEEE
Confidence 45 565555555544
No 11
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=80.86 E-value=29 Score=28.29 Aligned_cols=45 Identities=4% Similarity=0.275 Sum_probs=28.7
Q ss_pred HHHHHHHHheeeeEE-----------eeCCCEEEEeeEEEeeEEeeCCcEEEEEEEE
Q 048760 29 IFVVIVILIVFFTVF-----------KPKEPKISVTSIQLPSFSISNNTVNFTFSQY 74 (209)
Q Consensus 29 lll~~~~~li~~lv~-----------rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~ 74 (209)
++.+++++++.|... .++.|.|.+++++...|+.+ +.+++.+...
T Consensus 11 il~~~~l~l~~W~l~~~~~~~~~~~~~~~~Pdy~~~~~~~~~yd~~-G~l~y~l~a~ 66 (192)
T PRK10893 11 LLALIALVLIGWNLADKDEDTAPVVVNNNDPTYQSQHTDTVVYNPE-GALSYKLVAQ 66 (192)
T ss_pred HHHHHHHHHHHhhccCCccccccccCCCCCCCEEEeccEEEEECCC-CCEEEEEEec
Confidence 444555566666532 46789999999999888764 3344444433
No 12
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=69.06 E-value=35 Score=26.20 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=37.9
Q ss_pred HHHheeeeEEe--eCCCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEccEEEEEECCceEe
Q 048760 34 VILIVFFTVFK--PKEPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVG 102 (209)
Q Consensus 34 ~~~li~~lv~r--P~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg 102 (209)
++.+++|.++. -++|..++.+.+- ++. +-.+.+..+++|-.++....-...+.+..++...+
T Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~~~~--l~~-----~~~~~v~g~V~N~g~~~i~~c~i~~~l~~~~~~~~ 95 (149)
T PF09624_consen 32 LIPFFGYYWLDKYLKKIELTLTSQKR--LQY-----SESFYVDGTVTNTGKFTIKKCKITVKLYNDKQVSG 95 (149)
T ss_pred HHHHHHHHHHhhhcCCceEEEeeeee--eee-----ccEEEEEEEEEECCCCEeeEEEEEEEEEeCCCccC
Confidence 34444444443 3466666665543 332 35677778899988887777666777777554333
No 13
>PRK05529 cell division protein FtsQ; Provisional
Probab=65.02 E-value=11 Score=32.12 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=11.9
Q ss_pred CCEEEEeeEEEeeE
Q 048760 47 EPKISVTSIQLPSF 60 (209)
Q Consensus 47 ~P~~~v~~~~l~~f 60 (209)
.|-|.|.++++++-
T Consensus 58 Sp~~~v~~I~V~Gn 71 (255)
T PRK05529 58 SPLLALRSIEVAGN 71 (255)
T ss_pred CCceEEEEEEEECC
Confidence 69999999999753
No 14
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=64.79 E-value=0.88 Score=30.07 Aligned_cols=10 Identities=10% Similarity=-0.147 Sum_probs=5.1
Q ss_pred HHHHHheeee
Q 048760 32 VIVILIVFFT 41 (209)
Q Consensus 32 ~~~~~li~~l 41 (209)
.++.+++.|.
T Consensus 50 ~~lG~~~~~~ 59 (60)
T PF06072_consen 50 GGLGALVAWH 59 (60)
T ss_pred HHHHHHhhcc
Confidence 3444555554
No 15
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=44.07 E-value=13 Score=21.61 Aligned_cols=18 Identities=11% Similarity=0.519 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHheeee
Q 048760 24 ATIFLIFVVIVILIVFFT 41 (209)
Q Consensus 24 ~~l~llll~~~~~li~~l 41 (209)
+++..+.+++++++++|+
T Consensus 7 Gal~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 7 GALGVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceeeeHHHHHHHHHHHHH
Confidence 444445556667777775
No 16
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=42.02 E-value=12 Score=28.06 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=8.4
Q ss_pred HheeeeEEeeCCCE
Q 048760 36 LIVFFTVFKPKEPK 49 (209)
Q Consensus 36 ~li~~lv~rP~~P~ 49 (209)
++++|+.+||+.=+
T Consensus 13 ~~i~yf~iRPQkKr 26 (113)
T PRK06531 13 LGLIFFMQRQQKKQ 26 (113)
T ss_pred HHHHHheechHHHH
Confidence 33356678997543
No 17
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=40.95 E-value=1.6e+02 Score=22.56 Aligned_cols=50 Identities=18% Similarity=0.186 Sum_probs=29.3
Q ss_pred CCcEEEEEEEEEEEECCCCeeEE------EEccEEEEEECCceEeeEEcCCceecCCceEEE
Q 048760 64 NNTVNFTFSQYVTIKNPNKAAFS------HYDSTIQLIYSGSQVGFMFIPAGKIAAGQTQYM 119 (209)
Q Consensus 64 ~~~l~~~l~~~v~v~NPN~~~~~------yy~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v 119 (209)
+.....+|++++++||.+....+ |||.. |..+-..--.+.+.++-.+..+
T Consensus 18 ~~~~~~~Lt~tLSiRNtd~~~~i~i~~v~Yydt~------G~lvr~yl~~Pi~L~Pl~t~~~ 73 (125)
T PF11322_consen 18 NKHRPFNLTATLSIRNTDPTDPIYITSVDYYDTD------GKLVRSYLDKPIYLKPLATTEF 73 (125)
T ss_pred CCCceEeEEEEEEEEcCCCCCCEEEEEEEEECCC------CeEhHHhcCCCeEcCCCceEEE
Confidence 45667889999999998865433 44432 2233333333455555555543
No 18
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=40.45 E-value=35 Score=23.02 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=13.6
Q ss_pred HHHHHHHheeeeEEeeC
Q 048760 30 FVVIVILIVFFTVFKPK 46 (209)
Q Consensus 30 ll~~~~~li~~lv~rP~ 46 (209)
.+++.+..+.|++++|+
T Consensus 12 avaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 12 AVAAAAGAATWVIVQPR 28 (66)
T ss_pred HHHhhhceeEEEEECCC
Confidence 35666788999999998
No 19
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=38.98 E-value=1.7e+02 Score=22.24 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=46.9
Q ss_pred CCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEccEEEEEECCc--eEeeEEcCCceecCCceEEE
Q 048760 47 EPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGS--QVGFMFIPAGKIAAGQTQYM 119 (209)
Q Consensus 47 ~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~--~lg~~~vp~f~q~~~~~~~v 119 (209)
.|.+.+.++.+.. .+..-.+.+.++||...+.--....+.++..|. .+......++...|.+.-.+
T Consensus 27 ~p~L~l~~v~~~~-------~n~~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~ 94 (140)
T PF11797_consen 27 PPKLKLGKVKPGQ-------INGRNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNF 94 (140)
T ss_pred CcccEEeeeeeeE-------ECCeeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEe
Confidence 5666666665543 356677888999999776655566777788775 67788888888888885543
No 20
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=37.45 E-value=53 Score=23.45 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=13.8
Q ss_pred CCEEEEeeEEEeeEEeeCCcEEEEE--EEEEEEECCCCe
Q 048760 47 EPKISVTSIQLPSFSISNNTVNFTF--SQYVTIKNPNKA 83 (209)
Q Consensus 47 ~P~~~v~~~~l~~f~~~~~~l~~~l--~~~v~v~NPN~~ 83 (209)
...-....+++.++.++++.+.+.- .++++++|.+..
T Consensus 17 ~~~~~~v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 17 AAAAQTVTITVTDFGFSPSTITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp -------------EEEES-EEEEETTCEEEEEEEE-SSS
T ss_pred ccccccccccccCCeEecCEEEEcCCCeEEEEEEECCCC
Confidence 4444455566677777766544443 456777887755
No 21
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=37.29 E-value=14 Score=23.04 Aligned_cols=20 Identities=5% Similarity=0.439 Sum_probs=11.9
Q ss_pred HHHHHHHHHheeeeEEeeCC
Q 048760 28 LIFVVIVILIVFFTVFKPKE 47 (209)
Q Consensus 28 llll~~~~~li~~lv~rP~~ 47 (209)
++++.++.+.++|.+++|+.
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 44445555566666778873
No 22
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=36.64 E-value=1.8e+02 Score=23.08 Aligned_cols=15 Identities=7% Similarity=-0.018 Sum_probs=8.9
Q ss_pred HHHHHHHHheeeeEE
Q 048760 29 IFVVIVILIVFFTVF 43 (209)
Q Consensus 29 lll~~~~~li~~lv~ 43 (209)
+++++..+..+|+..
T Consensus 28 l~~~a~~~~~~~~~~ 42 (159)
T COG1580 28 LLALAGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHHHHHhhhc
Confidence 345556666666665
No 23
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=36.46 E-value=1.6e+02 Score=20.98 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=36.3
Q ss_pred cEEEEEEEEEEEECCCCee--EEEEc-cEEEEEECCceEe--eEEcCCceecCCceEEEEEEEE
Q 048760 66 TVNFTFSQYVTIKNPNKAA--FSHYD-STIQLIYSGSQVG--FMFIPAGKIAAGQTQYMAATFA 124 (209)
Q Consensus 66 ~l~~~l~~~v~v~NPN~~~--~~yy~-~~~~v~Y~g~~lg--~~~vp~f~q~~~~~~~v~~~l~ 124 (209)
.+.-++++.+++.||.... .+--. ....++|.|.... .........+++++..+...+.
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i~ 75 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTIT 75 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE-
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEEE
Confidence 3456788999999997543 22333 2466688888642 3444556788888887766655
No 24
>PF06835 LptC: Lipopolysaccharide-assembly, LptC-related; InterPro: IPR010664 This family consists of several related groups of proteins one of which is the LptC family. LptC is involved in lipopolysaccharide-assembly on the outer membrane of Gram-negative organisms. The cell envelope of Gram-negative bacteria consists of an inner (IM) and an outer membrane (OM) separated by an aqueous compartment, the periplasm, which contains the peptidoglycan layer. The OM is an asymmetric bilayer, with phospholipids in the inner leaflet and lipopolysaccharides (LPS) facing outward [, ]. The OM is an effective permeability barrier that protects the cells from toxic compounds, such as antibiotics and detergents, thus allowing bacteria to inhabit several different and often hostile environments. LPS is responsible for the permeability properties of the OM. LPS consists of the lipid A moiety (a glucosamine-based phospholipid) linked to the short core oligosaccharide and the distal O-antigen polysaccharide chain. The core oligosaccharide can be further divided into an inner core, composed of 3-deoxy-D-mannooctulosanate (KDO) and heptose, and an outer core, which has a somewhat variable structure. LPS is essential in most Gram-negative bacteria, with the notable exception of Neisseria meningitidis. The biogenesis of the OM implies that the individual components are transported from the site of synthesis to their final destination outside the IM by crossing both hydrophilic and hydrophobic compartments. The machinery and the energy source that drive this process are not yet fully understood. The lipid A-core moiety and the O-antigen repeat units are synthesized at the cytoplasmic face of the IM and are separately exported via two independent transport systems, namely, the O-antigen transporter Wzx (RfbX) [, ] and the ATP binding cassette (ABC) transporter MsbA that flips the lipid A-core moiety from the inner leaflet to the outer leaflet of the IM [, , ]. O-antigen repeat units are then polymerised in the periplasm by the Wzy polymerase and ligated to the lipid A-core moiety by the WaaL ligase [see, , ]. The LPS transport machinery is composed of LptA, LptB, LptC, LptD, LptE. This supported by the fact, that depletion of any of one of these proteins blocks the LPS assembly pathway and results in very similar OM biogenesis defects. Moreover, the location of at least one of these five proteins in every cellular compartment suggests a model for how the LPS assembly pathway is organised and ordered in space []. Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [].; PDB: 3MY2_A.
Probab=36.39 E-value=1.9e+02 Score=21.94 Aligned_cols=27 Identities=11% Similarity=0.211 Sum_probs=11.3
Q ss_pred EEEEEEEEEEEECCCCeeEEEEccEEE
Q 048760 67 VNFTFSQYVTIKNPNKAAFSHYDSTIQ 93 (209)
Q Consensus 67 l~~~l~~~v~v~NPN~~~~~yy~~~~~ 93 (209)
+...+...=..+++|.......+-.+.
T Consensus 51 ~~~~l~A~~~~~~~~~~~~~l~~p~~~ 77 (176)
T PF06835_consen 51 LQWKLTAERAEHYPNSDTVELEDPSLI 77 (176)
T ss_dssp --EEEE-SSEEEETTTTEEEEES-EEE
T ss_pred EEEEEEEeEEEEecCCCcEEEeccEEE
Confidence 445555544456666554333333333
No 25
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=35.47 E-value=16 Score=21.92 Aligned_cols=16 Identities=38% Similarity=0.964 Sum_probs=8.9
Q ss_pred HHHHHHHHheeeeEEe
Q 048760 29 IFVVIVILIVFFTVFK 44 (209)
Q Consensus 29 lll~~~~~li~~lv~r 44 (209)
++++.+..+|+|.++.
T Consensus 18 lflv~imliif~f~le 33 (43)
T PF11395_consen 18 LFLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444455666776553
No 26
>PF14927 Neurensin: Neurensin
Probab=35.43 E-value=48 Score=25.83 Aligned_cols=13 Identities=8% Similarity=0.352 Sum_probs=6.4
Q ss_pred HHHHHHHHh-eeee
Q 048760 29 IFVVIVILI-VFFT 41 (209)
Q Consensus 29 lll~~~~~l-i~~l 41 (209)
++++|++++ +-|+
T Consensus 54 ~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 54 LLLLGIVALTVGYL 67 (140)
T ss_pred HHHHHHHHHHhhcc
Confidence 445566544 4443
No 27
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=34.25 E-value=23 Score=28.08 Aligned_cols=17 Identities=24% Similarity=0.630 Sum_probs=11.1
Q ss_pred HHHHHHHheeeeEEeeC
Q 048760 30 FVVIVILIVFFTVFKPK 46 (209)
Q Consensus 30 ll~~~~~li~~lv~rP~ 46 (209)
+++++++.++|+.+||-
T Consensus 13 ~l~~~~~y~~W~~~rpV 29 (157)
T PF06092_consen 13 FLLACILYFLWLTLRPV 29 (157)
T ss_pred HHHHHHHHhhhhccCCe
Confidence 33344448889899883
No 28
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=34.22 E-value=59 Score=26.36 Aligned_cols=19 Identities=37% Similarity=0.987 Sum_probs=14.8
Q ss_pred HHHHHHHheeeeEEeeCCC
Q 048760 30 FVVIVILIVFFTVFKPKEP 48 (209)
Q Consensus 30 ll~~~~~li~~lv~rP~~P 48 (209)
+++++++++++.+++|+.|
T Consensus 13 ~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 13 LNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHhheeeEEEccCCC
Confidence 5566777788888999976
No 29
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=34.16 E-value=37 Score=28.40 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=10.5
Q ss_pred HHHHHheeeeEEeeCCCEE
Q 048760 32 VIVILIVFFTVFKPKEPKI 50 (209)
Q Consensus 32 ~~~~~li~~lv~rP~~P~~ 50 (209)
+|..+..+|-++|||....
T Consensus 172 ~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred hhcceEEEEEEeccccccc
Confidence 3334444444778876644
No 30
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=33.53 E-value=1.8e+02 Score=22.93 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=7.0
Q ss_pred EEEccEEEEEECCc
Q 048760 86 SHYDSTIQLIYSGS 99 (209)
Q Consensus 86 ~yy~~~~~v~Y~g~ 99 (209)
.|-...+.+.+++.
T Consensus 87 ryLkv~i~l~~~d~ 100 (170)
T PRK05696 87 RLVQIKVQLMVRGS 100 (170)
T ss_pred eEEEEEEEEEECCH
Confidence 34445555555544
No 31
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.47 E-value=46 Score=26.32 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=26.3
Q ss_pred HHHHHHHheeeeEEeeCCCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEc
Q 048760 30 FVVIVILIVFFTVFKPKEPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYD 89 (209)
Q Consensus 30 ll~~~~~li~~lv~rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~ 89 (209)
++++++++++|+..|+|.-.|- =+++. .++++++|+..-.+|.
T Consensus 62 ill~il~lvf~~c~r~kktdfi----------dSdGk-------vvtay~~n~~~~~w~~ 104 (154)
T PF04478_consen 62 ILLGILALVFIFCIRRKKTDFI----------DSDGK-------VVTAYRSNKLTKWWYS 104 (154)
T ss_pred HHHHHHHhheeEEEecccCccc----------cCCCc-------EEEEEcCchHHHHHHH
Confidence 4456777888888888874431 11121 3578888876655554
No 32
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=31.70 E-value=18 Score=26.97 Aligned_cols=18 Identities=22% Similarity=0.580 Sum_probs=10.3
Q ss_pred HHheeeeEEeeC--CCEEEE
Q 048760 35 ILIVFFTVFKPK--EPKISV 52 (209)
Q Consensus 35 ~~li~~lv~rP~--~P~~~v 52 (209)
+++++||++-=+ .|.|.|
T Consensus 9 ~~li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 9 AALIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHHHccccCceEEEE
Confidence 347777765433 366654
No 33
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=31.36 E-value=15 Score=32.13 Aligned_cols=16 Identities=13% Similarity=0.889 Sum_probs=10.5
Q ss_pred HHHHHHHHheeeeEEe
Q 048760 29 IFVVIVILIVFFTVFK 44 (209)
Q Consensus 29 lll~~~~~li~~lv~r 44 (209)
++++.++.+|+||++|
T Consensus 265 IliIVLIMvIIYLILR 280 (299)
T PF02009_consen 265 ILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445566777777765
No 34
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=31.13 E-value=52 Score=21.50 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=11.4
Q ss_pred HHHHHHHheeeeEEeeC
Q 048760 30 FVVIVILIVFFTVFKPK 46 (209)
Q Consensus 30 ll~~~~~li~~lv~rP~ 46 (209)
.++.++++++|+.-||+
T Consensus 40 ~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 40 AVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHhheeEEeccCC
Confidence 44555677788777774
No 35
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=31.12 E-value=3.4e+02 Score=23.29 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=11.6
Q ss_pred EEEEEEEEEEEECCCCe
Q 048760 67 VNFTFSQYVTIKNPNKA 83 (209)
Q Consensus 67 l~~~l~~~v~v~NPN~~ 83 (209)
+..+=++.+.++|.|..
T Consensus 84 i~s~~~v~~~~r~~~g~ 100 (264)
T PF04790_consen 84 IQSSRNVTLNARNENGS 100 (264)
T ss_pred EEecCceEEEEecCCCc
Confidence 44455677778888865
No 36
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=30.86 E-value=2.4e+02 Score=21.35 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=35.2
Q ss_pred EEeeEEEeeEEeeC-CcEEEEEEEEEEEECCCCeeEEEEccEEEEE-ECCceEeeEEc
Q 048760 51 SVTSIQLPSFSISN-NTVNFTFSQYVTIKNPNKAAFSHYDSTIQLI-YSGSQVGFMFI 106 (209)
Q Consensus 51 ~v~~~~l~~f~~~~-~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~-Y~g~~lg~~~v 106 (209)
.++.+++....+.. +.-.-.+.++.+++|...+.-.|=...+.++ -+|+.+.+-.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEEE
Confidence 44444544433321 1235667888899998887666666666665 56777887666
No 37
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.49 E-value=18 Score=24.00 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=12.7
Q ss_pred HHHHHHHHHheeeeEEeeCC
Q 048760 28 LIFVVIVILIVFFTVFKPKE 47 (209)
Q Consensus 28 llll~~~~~li~~lv~rP~~ 47 (209)
++.+.++.+.++|.+|||+.
T Consensus 15 t~~~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 34445555666777888874
No 38
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=29.78 E-value=1e+02 Score=26.26 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=7.1
Q ss_pred HHHHHHHHheeeeEE
Q 048760 29 IFVVIVILIVFFTVF 43 (209)
Q Consensus 29 lll~~~~~li~~lv~ 43 (209)
+.++++++++.|+-.
T Consensus 11 ~~~~~~~~~~~~~~~ 25 (291)
T TIGR00996 11 AAVVVLGVVFLRLPF 25 (291)
T ss_pred HHHHHHhheeecccc
Confidence 334444555555543
No 39
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=28.76 E-value=40 Score=24.35 Aligned_cols=14 Identities=7% Similarity=-0.033 Sum_probs=7.3
Q ss_pred HHHHHHHheeeeEE
Q 048760 30 FVVIVILIVFFTVF 43 (209)
Q Consensus 30 ll~~~~~li~~lv~ 43 (209)
++.++++++.|+++
T Consensus 78 ~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 78 VVGGLVGFLCWWFV 91 (96)
T ss_pred HHHHHHHHHhheeE
Confidence 34455555556554
No 40
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.82 E-value=46 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=21.1
Q ss_pred HHHheeeeEEeeCCCEEEEeeEEE-e--eEEeeC
Q 048760 34 VILIVFFTVFKPKEPKISVTSIQL-P--SFSISN 64 (209)
Q Consensus 34 ~~~li~~lv~rP~~P~~~v~~~~l-~--~f~~~~ 64 (209)
++++++..++.|+.|..++.+.+= + .|++++
T Consensus 25 ~~~~i~~~vlsp~ee~t~~~~a~~~~~~~fqitt 58 (197)
T COG4698 25 LAVLIALFVLSPREEPTHLEDASEKSEKSFQITT 58 (197)
T ss_pred HHHHhheeeccCCCCCchhhccCcccceeEEEEc
Confidence 346677778899998888777754 2 355543
No 41
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=27.81 E-value=20 Score=26.94 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=0.0
Q ss_pred HHheeeeEEe
Q 048760 35 ILIVFFTVFK 44 (209)
Q Consensus 35 ~~li~~lv~r 44 (209)
-++.+|++|.
T Consensus 48 Qa~TaYfv~~ 57 (114)
T PF09307_consen 48 QAVTAYFVFQ 57 (114)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 3455666665
No 42
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=25.90 E-value=64 Score=19.92 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=14.4
Q ss_pred HHHHHHHHHheeeeEEee
Q 048760 28 LIFVVIVILIVFFTVFKP 45 (209)
Q Consensus 28 llll~~~~~li~~lv~rP 45 (209)
..+++++++.-+|..|-|
T Consensus 12 ~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 12 SCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHhhhhhheeCC
Confidence 356788888999999976
No 43
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=25.83 E-value=83 Score=19.71 Aligned_cols=17 Identities=18% Similarity=0.387 Sum_probs=14.3
Q ss_pred HHHHHHHHheeeeEEee
Q 048760 29 IFVVIVILIVFFTVFKP 45 (209)
Q Consensus 29 lll~~~~~li~~lv~rP 45 (209)
.+++++.+.-+|+.|-|
T Consensus 16 ~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 16 AILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHhhheeeeccCC
Confidence 46788899999999976
No 44
>CHL00031 psbT photosystem II protein T
Probab=25.15 E-value=50 Score=19.16 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=11.0
Q ss_pred HHHHHHHHheeeeEEeeCCCEE
Q 048760 29 IFVVIVILIVFFTVFKPKEPKI 50 (209)
Q Consensus 29 lll~~~~~li~~lv~rP~~P~~ 50 (209)
+++++.++++++-++-=.+|++
T Consensus 8 fll~~tlgilFFAI~FRePPri 29 (33)
T CHL00031 8 FLLVSTLGIIFFAIFFREPPKV 29 (33)
T ss_pred HHHHHHHHHHHHhheecCCCCC
Confidence 3444455555555443356664
No 45
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=24.86 E-value=75 Score=27.07 Aligned_cols=31 Identities=10% Similarity=0.450 Sum_probs=25.4
Q ss_pred HHHHHHHHheeeeEEeeCCCEEEEeeEEEee
Q 048760 29 IFVVIVILIVFFTVFKPKEPKISVTSIQLPS 59 (209)
Q Consensus 29 lll~~~~~li~~lv~rP~~P~~~v~~~~l~~ 59 (209)
++++++.++++|....++.|.|.+..+.+++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 3456667788888888999999999999975
No 46
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=24.73 E-value=1.1e+02 Score=22.10 Aligned_cols=11 Identities=18% Similarity=0.688 Sum_probs=4.9
Q ss_pred HHHheeeeEEe
Q 048760 34 VILIVFFTVFK 44 (209)
Q Consensus 34 ~~~li~~lv~r 44 (209)
+.++..|.++|
T Consensus 78 ly~IyYFVILR 88 (101)
T PF06024_consen 78 LYAIYYFVILR 88 (101)
T ss_pred HhhheEEEEEe
Confidence 33444444555
No 47
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=24.65 E-value=41 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=10.7
Q ss_pred HHHHHHHHheeeeEEeeCCCEE
Q 048760 29 IFVVIVILIVFFTVFKPKEPKI 50 (209)
Q Consensus 29 lll~~~~~li~~lv~rP~~P~~ 50 (209)
+++++.++++++-++-=.+|++
T Consensus 8 fll~~tlgiiFFAIfFRepPri 29 (31)
T PRK11875 8 LILTLALVTLFFAIAFRDPPKI 29 (31)
T ss_pred HHHHHHHHHHHHhhhccCCCCC
Confidence 3444445555555443356654
No 48
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.24 E-value=1.4e+02 Score=24.97 Aligned_cols=44 Identities=23% Similarity=0.393 Sum_probs=25.1
Q ss_pred EEEEECCCCeeEEEEccEEEEEECCceEeeEEcCCceecCCceEEEEEE
Q 048760 74 YVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIPAGKIAAGQTQYMAAT 122 (209)
Q Consensus 74 ~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~ 122 (209)
.++++||-.....+.+..+.. +|..++ +...++.++++..+...
T Consensus 166 ~l~v~Nptpy~vtl~~~~l~~--~~~~~~---~~~~mv~P~s~~~~~l~ 209 (235)
T COG3121 166 LLTVKNPTPYYVTLANLTLNV--GGRKLG---LNSGMVAPFSTRQFPLP 209 (235)
T ss_pred EEEEECCCCcEEEEEEEEEee--CceecC---CCcceECCCccceeecC
Confidence 688999986544444333322 555554 44566666666655433
No 49
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=23.79 E-value=84 Score=24.81 Aligned_cols=23 Identities=4% Similarity=0.157 Sum_probs=13.3
Q ss_pred HHHHHHHHHheeeeEEeeCCCEE
Q 048760 28 LIFVVIVILIVFFTVFKPKEPKI 50 (209)
Q Consensus 28 llll~~~~~li~~lv~rP~~P~~ 50 (209)
+++|+..++.++|.+=|...-+|
T Consensus 19 l~lLl~cgiGcvwhwkhr~~~~f 41 (158)
T PF11770_consen 19 LLLLLLCGIGCVWHWKHRDSTRF 41 (158)
T ss_pred HHHHHHHhcceEEEeeccCcccc
Confidence 34555666778887665433333
No 50
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=23.68 E-value=38 Score=21.25 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=11.1
Q ss_pred HHHHHHHheeeeEEeeCC
Q 048760 30 FVVIVILIVFFTVFKPKE 47 (209)
Q Consensus 30 ll~~~~~li~~lv~rP~~ 47 (209)
.+.++.+.+++.+|+|+.
T Consensus 18 ~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 18 YLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHhCCCc
Confidence 344555666666778873
No 51
>PF03923 Lipoprotein_16: Uncharacterized lipoprotein; InterPro: IPR005619 The function of this presumed lipoprotein is unknown. The family includes Escherichia coli YajG P36671 from SWISSPROT.
Probab=22.95 E-value=3.6e+02 Score=20.85 Aligned_cols=45 Identities=13% Similarity=0.107 Sum_probs=29.3
Q ss_pred CCCEEEEeeEEEeeEEeeC--C----cEEEEEEEEEEEECCCCeeEEEEcc
Q 048760 46 KEPKISVTSIQLPSFSISN--N----TVNFTFSQYVTIKNPNKAAFSHYDS 90 (209)
Q Consensus 46 ~~P~~~v~~~~l~~f~~~~--~----~l~~~l~~~v~v~NPN~~~~~yy~~ 90 (209)
..+.-..-.+.|..|.+.- + ..++.+.+.+.+.|+|......|..
T Consensus 68 ~~~~~~~v~v~I~~l~~~v~~~~~~~~~~~~i~i~v~~~~~~~~~tK~y~~ 118 (159)
T PF03923_consen 68 GPNANNNVTVQINELYADVKQGSLRYNATAKIQIEVTAQNGNGTFTKNYSA 118 (159)
T ss_pred CCCCceEEEEEehheEEEeccceEEEEEEEEEEEEEEEEcCCCEEEEEEEe
Confidence 3333344455566665531 2 5788899999999999876666654
No 52
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=22.86 E-value=2.5e+02 Score=18.94 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=30.9
Q ss_pred EEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEEcCCceecCCceEEEEEEEEE
Q 048760 69 FTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIPAGKIAAGQTQYMAATFAV 125 (209)
Q Consensus 69 ~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~l~~ 125 (209)
-.+.+.++++|.-... -.+..+.++..|..++...++. .++.++..+.+.+..
T Consensus 19 ~~~~i~~~V~N~G~~~--~~~~~v~~~~~~~~~~~~~i~~--L~~g~~~~v~~~~~~ 71 (101)
T PF07705_consen 19 EPVTITVTVKNNGTAD--AENVTVRLYLDGNSVSTVTIPS--LAPGESETVTFTWTP 71 (101)
T ss_dssp SEEEEEEEEEE-SSS---BEEEEEEEEETTEEEEEEEESE--B-TTEEEEEEEEEE-
T ss_pred CEEEEEEEEEECCCCC--CCCEEEEEEECCceeccEEECC--cCCCcEEEEEEEEEe
Confidence 4566777888865433 2233566677777788777755 556666666555543
No 53
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=22.48 E-value=1e+02 Score=18.48 Aligned_cols=18 Identities=22% Similarity=0.443 Sum_probs=12.6
Q ss_pred HHHHHHHHheeeeEEeeC
Q 048760 29 IFVVIVILIVFFTVFKPK 46 (209)
Q Consensus 29 lll~~~~~li~~lv~rP~ 46 (209)
+++.-+++.++|++++++
T Consensus 29 i~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 29 ILFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHHhheEEEeCC
Confidence 344667788888888754
No 54
>CHL00020 psbN photosystem II protein N
Probab=22.00 E-value=1e+02 Score=18.99 Aligned_cols=17 Identities=18% Similarity=0.213 Sum_probs=14.1
Q ss_pred HHHHHHHHheeeeEEee
Q 048760 29 IFVVIVILIVFFTVFKP 45 (209)
Q Consensus 29 lll~~~~~li~~lv~rP 45 (209)
.+++++++.-+|+.|-|
T Consensus 13 ~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 13 GLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHhhheeeeeccCC
Confidence 46788889999999976
No 55
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=21.94 E-value=66 Score=23.92 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHheeeeEEeeCCCEEEE
Q 048760 21 CIVATIFLIFVVIVILIVFFTVFKPKEPKISV 52 (209)
Q Consensus 21 c~~~~l~llll~~~~~li~~lv~rP~~P~~~v 52 (209)
++.+++..+.++.+.+.+.|++.++..|.+..
T Consensus 4 ~l~~~~~~~~~~~~~~~vt~~l~~~~~p~iV~ 35 (111)
T PF09677_consen 4 WLVIVLLAVAALLLSAWVTWLLASQPQPRIVT 35 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 33433333333334455666666766665433
No 56
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=20.58 E-value=65 Score=24.65 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHheeeeEEeeCCCEEEEe
Q 048760 21 CIVATIFLIFVVIVILIVFFTVFKPKEPKISVT 53 (209)
Q Consensus 21 c~~~~l~llll~~~~~li~~lv~rP~~P~~~v~ 53 (209)
|++.+-.+++++|+++-.+...|.++...+.+-
T Consensus 51 ci~pfG~vili~GvvvT~vays~n~~~si~~~~ 83 (129)
T PF15099_consen 51 CIMPFGVVILIAGVVVTAVAYSFNSHGSIISIF 83 (129)
T ss_pred EEEEehHHHHHHhhHhheeeEeecCCcchhhhe
Confidence 555544556778888777777777776655443
No 57
>PHA03049 IMV membrane protein; Provisional
Probab=20.26 E-value=34 Score=23.17 Aligned_cols=19 Identities=16% Similarity=0.639 Sum_probs=13.4
Q ss_pred HHHHHHHHHHheeeeEEee
Q 048760 27 FLIFVVIVILIVFFTVFKP 45 (209)
Q Consensus 27 ~llll~~~~~li~~lv~rP 45 (209)
++++.++++++|+|-+++=
T Consensus 7 l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 7 LVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3456677788888888753
No 58
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=20.21 E-value=69 Score=27.45 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=16.1
Q ss_pred cEEEEEEEEEEEECCCCeeE
Q 048760 66 TVNFTFSQYVTIKNPNKAAF 85 (209)
Q Consensus 66 ~l~~~l~~~v~v~NPN~~~~ 85 (209)
.+...=++++.++|||..+.
T Consensus 105 ~~~S~rnvtvnarn~~g~v~ 124 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVT 124 (292)
T ss_pred EEEeccCeeEEccCCCCcee
Confidence 46677788999999998763
No 59
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=20.13 E-value=38 Score=25.24 Aligned_cols=15 Identities=0% Similarity=0.040 Sum_probs=8.4
Q ss_pred HHHheeeeEEeeCCC
Q 048760 34 VILIVFFTVFKPKEP 48 (209)
Q Consensus 34 ~~~li~~lv~rP~~P 48 (209)
+++++.|+.+||+.=
T Consensus 13 i~~i~yF~~iRPQkK 27 (109)
T PRK05886 13 IMGGFMYFASRRQRK 27 (109)
T ss_pred HHHHHHHHHccHHHH
Confidence 334444556788743
Done!