Query 048760
Match_columns 209
No_of_seqs 116 out of 762
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 22:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.1 1.7E-05 5.8E-10 62.9 10.1 79 46-128 43-122 (174)
2 1xo8_A AT1G01470; structural g 97.7 2.5E-05 8.4E-10 60.5 3.7 79 46-128 20-99 (151)
3 3but_A Uncharacterized protein 97.3 0.0017 5.7E-08 49.3 8.9 66 67-132 16-82 (136)
4 3j1r_A Archaeal adhesion filam 74.5 0.69 2.4E-05 24.4 0.2 20 23-42 5-24 (26)
5 2l0d_A Cell surface protein; s 51.1 63 0.0022 23.0 7.0 53 68-124 18-70 (114)
6 2knc_B Integrin beta-3; transm 39.5 12 0.00042 25.1 1.5 15 27-41 19-33 (79)
7 3me0_B PAPG protein; immunoglo 35.0 74 0.0025 23.3 5.2 81 44-126 10-108 (128)
8 2l6w_A Beta-type platelet-deri 39.6 8.9 0.0003 22.3 0.0 15 37-51 25-39 (39)
9 3s8f_C Cytochrome C oxidase po 32.9 16 0.00055 20.6 1.0 18 24-41 7-24 (34)
10 3arc_T Photosystem II reaction 26.1 10 0.00035 21.1 -0.6 21 30-50 9-29 (32)
11 3qde_A Cellobiose phosphorylas 23.0 1.2E+02 0.0042 28.8 5.8 57 40-108 741-797 (811)
12 2lk9_A Bone marrow stromal ant 20.7 33 0.0011 19.2 0.8 19 24-42 10-28 (35)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.13 E-value=1.7e-05 Score=62.85 Aligned_cols=79 Identities=15% Similarity=0.250 Sum_probs=66.8
Q ss_pred CCCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEEcC-CceecCCceEEEEEEEE
Q 048760 46 KEPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIP-AGKIAAGQTQYMAATFA 124 (209)
Q Consensus 46 ~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~l~ 124 (209)
++|++++.++++..++.. ..++.+.++++|||....-+-+....+.-+|..++++..+ ++..++++++.+.+.++
T Consensus 43 ~~PeV~v~~v~~~~~~l~----~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~Vpv~ 118 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD----GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLDVPVK 118 (174)
T ss_dssp CCCEEEEEEEEEEEECSS----SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEEEEEE
T ss_pred CCCEEEEEEeEEeccccc----eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEEEEEE
Confidence 689999999999877653 4889999999999988666656677788899999999988 58999999999999988
Q ss_pred Eeee
Q 048760 125 VQSF 128 (209)
Q Consensus 125 ~~~~ 128 (209)
....
T Consensus 119 v~~~ 122 (174)
T 1yyc_A 119 VAYS 122 (174)
T ss_dssp ESHH
T ss_pred EEHH
Confidence 7643
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.68 E-value=2.5e-05 Score=60.50 Aligned_cols=79 Identities=19% Similarity=0.284 Sum_probs=63.8
Q ss_pred CCCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEEcC-CceecCCceEEEEEEEE
Q 048760 46 KEPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIP-AGKIAAGQTQYMAATFA 124 (209)
Q Consensus 46 ~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp-~f~q~~~~~~~v~~~l~ 124 (209)
++|++++.++++..++. ...++.+.++++|||....-+-+....+.-+|..++++..+ ++..++++++.+.+.++
T Consensus 20 ~~P~v~v~~v~~~~~~~----~~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~vpv~ 95 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALDIPVV 95 (151)
T ss_dssp CSCCCBCSEEEECCCTT----TEECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEEECCC
T ss_pred CCCEEEEEEeEEeccCc----ceeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEEEEEE
Confidence 67999999888876543 35789999999999987655555566677789999998887 58999999999998888
Q ss_pred Eeee
Q 048760 125 VQSF 128 (209)
Q Consensus 125 ~~~~ 128 (209)
....
T Consensus 96 v~~~ 99 (151)
T 1xo8_A 96 VPYS 99 (151)
T ss_dssp EEHH
T ss_pred EEHH
Confidence 7643
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.26 E-value=0.0017 Score=49.31 Aligned_cols=66 Identities=5% Similarity=0.048 Sum_probs=55.2
Q ss_pred EEEEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEE-cCCceecCCceEEEEEEEEEeeeeecc
Q 048760 67 VNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMF-IPAGKIAAGQTQYMAATFAVQSFPIST 132 (209)
Q Consensus 67 l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~-vp~f~q~~~~~~~v~~~l~~~~~~~~~ 132 (209)
-.+.+.+.+.+.|||....-+-.....++..|..+|++. ...+..++.+++.+.+.+..+...+..
T Consensus 16 ~~t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~ 82 (136)
T 3but_A 16 SQTEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLRE 82 (136)
T ss_dssp SEEEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTT
T ss_pred cEEEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHH
Confidence 367899999999999876666666788899999999977 568999999999999999988765543
No 4
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=74.55 E-value=0.69 Score=24.42 Aligned_cols=20 Identities=25% Similarity=0.652 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHheeeeE
Q 048760 23 VATIFLIFVVIVILIVFFTV 42 (209)
Q Consensus 23 ~~~l~llll~~~~~li~~lv 42 (209)
++++.+++++.+++.++|++
T Consensus 5 VA~~lLIviav~aaVllylW 24 (26)
T 3j1r_A 5 IATLLLILIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44454555555555555554
No 5
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=51.13 E-value=63 Score=22.98 Aligned_cols=53 Identities=13% Similarity=0.156 Sum_probs=34.7
Q ss_pred EEEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEEcCCceecCCceEEEEEEEE
Q 048760 68 NFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIPAGKIAAGQTQYMAATFA 124 (209)
Q Consensus 68 ~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp~f~q~~~~~~~v~~~l~ 124 (209)
.-..+++++++|.-.... ....+.++.+|..++...+++ ..++.++.+.+...
T Consensus 18 ~~~~ti~atVkN~G~~~a--~~~~V~ly~~g~~v~t~~v~~--LaaG~s~tv~~~w~ 70 (114)
T 2l0d_A 18 NTVNTMTATIENQGNKDS--TSFNVSLLVDGIVVDTQTVTS--LESENSTNVDFHWT 70 (114)
T ss_dssp TSEEEEEEEEEECSSSCB--CCEEEEEEETTEEEEEEEESC--BCBTCEEEEEEEEE
T ss_pred CCeEEEEEEEEECCCCCC--CCEEEEEEECCEEEcceeccc--ccCCCEEEEEEEEe
Confidence 345677789999765431 123566677888999988887 55666666655433
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=39.46 E-value=12 Score=25.11 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=10.2
Q ss_pred HHHHHHHHHHheeee
Q 048760 27 FLIFVVIVILIVFFT 41 (209)
Q Consensus 27 ~llll~~~~~li~~l 41 (209)
..++++|++++++|-
T Consensus 19 ~gilliGllllliwk 33 (79)
T 2knc_B 19 GAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345677888777774
No 7
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=34.98 E-value=74 Score=23.31 Aligned_cols=81 Identities=14% Similarity=0.088 Sum_probs=41.5
Q ss_pred eeCCCEEEEeeEEEeeEEeeCC----------cEEEEEEEEEEEEC--CCCe----eEE-EEcc-EEEEEECCceEeeEE
Q 048760 44 KPKEPKISVTSIQLPSFSISNN----------TVNFTFSQYVTIKN--PNKA----AFS-HYDS-TIQLIYSGSQVGFMF 105 (209)
Q Consensus 44 rP~~P~~~v~~~~l~~f~~~~~----------~l~~~l~~~v~v~N--PN~~----~~~-yy~~-~~~v~Y~g~~lg~~~ 105 (209)
||..|++.++.=+++.=.+.+. +...++-+.++ .| |++. ..+ ..++ ...++-+|+..++..
T Consensus 10 ~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt-~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~ 88 (128)
T 3me0_B 10 RPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLL-RNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETT 88 (128)
T ss_dssp EECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEE-ECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEE
T ss_pred CCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEe-cCCcccccccCceEEecCCCeEEEEEECCeecccee
Confidence 8899999998776653222221 11122222332 32 2221 122 2233 566777888888877
Q ss_pred cCCceecCCceEEEEEEEEEe
Q 048760 106 IPAGKIAAGQTQYMAATFAVQ 126 (209)
Q Consensus 106 vp~f~q~~~~~~~v~~~l~~~ 126 (209)
+ .|+....++-.|..++.+.
T Consensus 89 ~-~~~~~~s~tvtV~S~L~g~ 108 (128)
T 3me0_B 89 M-RWYKAGTQNLTIGSRLYGE 108 (128)
T ss_dssp E-EESSSEEEEEEEEEEEEEC
T ss_pred E-EEEecCCcEEEEEEEEecC
Confidence 7 3444444454454455433
No 8
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=39.63 E-value=8.9 Score=22.30 Aligned_cols=15 Identities=13% Similarity=0.499 Sum_probs=7.9
Q ss_pred heeeeEEeeCCCEEE
Q 048760 37 IVFFTVFKPKEPKIS 51 (209)
Q Consensus 37 li~~lv~rP~~P~~~ 51 (209)
+++..+..-++|+|+
T Consensus 25 LIiLi~~w~qKPrYe 39 (39)
T 2l6w_A 25 LIILIMLWQKKPRYE 39 (39)
Confidence 333334455777763
No 9
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=32.87 E-value=16 Score=20.59 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHheeee
Q 048760 24 ATIFLIFVVIVILIVFFT 41 (209)
Q Consensus 24 ~~l~llll~~~~~li~~l 41 (209)
+++..+++++++++++|+
T Consensus 7 GTl~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHH
Confidence 344445566666666664
No 10
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=26.12 E-value=10 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=10.1
Q ss_pred HHHHHHHheeeeEEeeCCCEE
Q 048760 30 FVVIVILIVFFTVFKPKEPKI 50 (209)
Q Consensus 30 ll~~~~~li~~lv~rP~~P~~ 50 (209)
++++.++++++-++-..+|++
T Consensus 9 ll~~tlgiiFFAI~FRePPri 29 (32)
T 3arc_T 9 IFACIIALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHhhhhcCCCCC
Confidence 334444444444444456654
No 11
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=22.96 E-value=1.2e+02 Score=28.77 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=35.7
Q ss_pred eeEEeeCCCEEEEeeEEEeeEEeeCCcEEEEEEEEEEEECCCCeeEEEEccEEEEEECCceEeeEEcCC
Q 048760 40 FTVFKPKEPKISVTSIQLPSFSISNNTVNFTFSQYVTIKNPNKAAFSHYDSTIQLIYSGSQVGFMFIPA 108 (209)
Q Consensus 40 ~lv~rP~~P~~~v~~~~l~~f~~~~~~l~~~l~~~v~v~NPN~~~~~yy~~~~~v~Y~g~~lg~~~vp~ 108 (209)
-|.+.|..|.. .+.+++. +.+.+ -.+.|+++||+... .....+.-+|..+....+|-
T Consensus 741 ~L~i~P~LP~~-w~~~~~~-~~~~g------~~~~I~v~~~~~~~----~~~~~~~~dg~~~~~~~i~~ 797 (811)
T 3qde_A 741 GLKIDPCIPKA-WDGYKVT-RYFRG------STYEITVKNPNHVS----KGVAKITVDGNEISGNILPV 797 (811)
T ss_dssp EEEECCBCCTT-CCEEEEE-EEETT------EEEEEEEECTTCCS----BCEEEEEETTEECSSSBCCC
T ss_pred EEEEeCcCCcc-cCcEEEE-EEECC------EEEEEEEEccCCCC----CCcEEEEECCEECcCCeeee
Confidence 35568887776 6666665 34422 23466778998632 12456777888886666775
No 12
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=20.72 E-value=33 Score=19.19 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHheeeeE
Q 048760 24 ATIFLIFVVIVILIVFFTV 42 (209)
Q Consensus 24 ~~l~llll~~~~~li~~lv 42 (209)
+++.+++++++.+.+++.+
T Consensus 10 Gvl~LLviV~LgV~LI~f~ 28 (35)
T 2lk9_A 10 GILVLLIIVILGVPLIIFT 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhcchheEEe
Confidence 3343443344444444333
Done!