BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048761
(221 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ET7|A Chain A, Structural And Spectroscopic Insights Into The Mechanism
Of Oxalate Oxidase
Length = 201
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 118/201 (58%), Gaps = 11/201 (5%)
Query: 22 SDPDPIQDFCIPNPKFGSIKVAHLTILPCKNSSEATTDDFVFSG-LKSAGNFSD-TGLAT 79
SDPDP+QDFC+ + ++ V T CK SEA DDF+FS L AGN S G A
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHT---CKPMSEAG-DDFLFSSKLTKAGNTSTPNGSAV 56
Query: 80 IPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV---DSSS 136
++ +PG NTLG+S R D G NPPH HPRATEI V++G + G + DS +
Sbjct: 57 TELDVAEWPGTNTLGVSMARVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGN 116
Query: 137 RVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSG--IDV 194
++++RV++ GE V PRGLMHFQ NVG A + SFNSQNPG +P +FGS I
Sbjct: 117 KLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPT 176
Query: 195 ELLEKAFGLSPKQIGTMRRRF 215
+L KA + + ++ +F
Sbjct: 177 PVLTKALRVEAGVVELLKSKF 197
>pdb|2ETE|A Chain A, Recombinant Oxalate Oxidase In Complex With Glycolate
pdb|2ETE|B Chain B, Recombinant Oxalate Oxidase In Complex With Glycolate
Length = 201
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 118/201 (58%), Gaps = 11/201 (5%)
Query: 22 SDPDPIQDFCIPNPKFGSIKVAHLTILPCKNSSEATTDDFVFSG-LKSAGNFSD-TGLAT 79
SDPDP+QDFC+ + ++ V T CK SEA DDF+FS L AGN S G A
Sbjct: 1 SDPDPLQDFCVADLDGKAVSVNGHT---CKPMSEAG-DDFLFSSKLTKAGNTSTPNGSAV 56
Query: 80 IPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV---DSSS 136
++ +PG NTLG+S R D G NPPH HPRATEI V++G + G + DS +
Sbjct: 57 TELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGN 116
Query: 137 RVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSG--IDV 194
++++RV++ GE V PRGLMHFQ NVG A + SFNSQNPG +P +FGS I
Sbjct: 117 KLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPT 176
Query: 195 ELLEKAFGLSPKQIGTMRRRF 215
+L KA + + ++ +F
Sbjct: 177 PVLTKALRVEAGVVELLKSKF 197
>pdb|1FI2|A Chain A, Crystal Structure Of Germin (Oxalate Oxidase)
pdb|2ET1|A Chain A, Oxalate Oxidase In Complex With Substrate Analogue
Glycolate
Length = 201
Score = 147 bits (371), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/201 (43%), Positives = 118/201 (58%), Gaps = 11/201 (5%)
Query: 22 SDPDPIQDFCIPNPKFGSIKVAHLTILPCKNSSEATTDDFVFSG-LKSAGNFSD-TGLAT 79
+DPDP+QDFC+ + ++ V T CK SEA DDF+FS L AGN S G A
Sbjct: 1 TDPDPLQDFCVADLDGKAVSVNGHT---CKPMSEAG-DDFLFSSKLTKAGNTSTPNGSAV 56
Query: 80 IPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV---DSSS 136
++ +PG NTLG+S R D G NPPH HPRATEI V++G + G + DS +
Sbjct: 57 TELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGN 116
Query: 137 RVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSG--IDV 194
++++RV++ GE V PRGLMHFQ NVG A + SFNSQNPG +P +FGS I
Sbjct: 117 KLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGSDPPIPT 176
Query: 195 ELLEKAFGLSPKQIGTMRRRF 215
+L KA + + ++ +F
Sbjct: 177 PVLTKALRVEAGVVELLKSKF 197
>pdb|2V09|A Chain A, Sens161-164dssn Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 385
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154
++ V L+ GAI H+H A E AY++ GS VD R F + +G++ FP G
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG 137
Query: 155 LMHF--QMNVGDEPATIF--GSFNSQN 177
L H + G E +F GSF+S N
Sbjct: 138 LPHSIQALEEGAEFLLVFDDGSFDSSN 164
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164
GA+ H+HP E Y + G S + G+V P + H+ N+GD
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 165 EPATIFGSFNSQN 177
EP F +
Sbjct: 327 EPLVFLEIFKDDH 339
>pdb|2VQA|A Chain A, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|B Chain B, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca.
pdb|2VQA|C Chain C, Protein-Folding Location Can Regulate Mn Versus Cu- Or Zn-
Binding. Crystal Structure Of Mnca
Length = 361
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%)
Query: 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPR 153
GM+ V L GAI H+H A E AYV++G +V + +G + FPR
Sbjct: 51 GMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPR 110
Query: 154 GLMHFQMNVGDEPATIFGSFN 174
G H +G + A FN
Sbjct: 111 GWGHSIEGIGPDTAKFLLVFN 131
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 87 FPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQG 146
FPG + M+ L GA+ H+HP A E YV+ G + S + ++QG
Sbjct: 228 FPG--SFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQG 285
Query: 147 EVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSGIDVELLEKAFGLSPK 206
+V P+G H N +P I FN + Q I + + + +L F +SP+
Sbjct: 286 DVGYVPKGYGHAIRNSSQKPLDIVVVFNDGD--YQSIDLSTWLASNPSSVLGNTFQISPE 343
>pdb|2UYA|A Chain A, Del162-163 Mutant Of Bacillus Subtilis Oxalate
Decarboxylase Oxdc
Length = 383
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154
++ V L+ GAI H+H A E AY++ GS VD R F + +G++ FP G
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG 137
Query: 155 LMHF--QMNVGDEPATIF--GSFNS 175
L H + G E +F GSF+S
Sbjct: 138 LPHSIQALEEGAEFLLVFDDGSFSS 162
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164
GA+ H+HP E Y + G S + G+V P + H+ N+GD
Sbjct: 265 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 324
Query: 165 EPATIFGSFNSQN 177
EP F +
Sbjct: 325 EPLVFLEIFKDDH 337
>pdb|2UY9|A Chain A, E162a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 9/121 (7%)
Query: 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154
++ V L+ GAI H+H A E AY++ GS VD R F + +G++ FP G
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG 137
Query: 155 LMHF--QMNVGDEPATIF--GSFNSQNPGNQKIPSAIFGSGIDVELLEKAFGLSPKQIGT 210
L H + G E +F GSF++ N + + E++ FG++ ++I
Sbjct: 138 LPHSIQALEEGAEFLLVFDDGSFSA----NSTFQLTDWLAHTPKEVIAANFGVTKEEISN 193
Query: 211 M 211
+
Sbjct: 194 L 194
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164
GA+ H+HP E Y + G S + G+V P + H+ N+GD
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 165 EPATIFGSFNSQN 177
EP F +
Sbjct: 327 EPLVFLEIFKDDH 339
>pdb|1L3J|A Chain A, Crystal Structure Of Oxalate Decarboxylase Formate Complex
pdb|1UW8|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154
++ V L+ GAI H+H A E AY++ GS VD R F + +G++ FP G
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG 137
Query: 155 LMHF--QMNVGDEPATIF--GSFNSQNPGNQKIPSAIFGSGIDVELLEKAFGLSPKQIGT 210
L H + G E +F GSF+ N + + E++ FG++ ++I
Sbjct: 138 LPHSIQALEEGAEFLLVFDDGSFSE----NSTFQLTDWLAHTPKEVIAANFGVTKEEISN 193
Query: 211 M 211
+
Sbjct: 194 L 194
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164
GA+ H+HP E Y + G S + G+V P + H+ N+GD
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 165 EPATIFGSFNSQN 177
EP F +
Sbjct: 327 EPLVFLEIFKDDH 339
>pdb|2UYB|A Chain A, S161a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154
++ V L+ GAI H+H A E AY++ GS VD R F + +G++ FP G
Sbjct: 79 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG 137
Query: 155 LMH 157
L H
Sbjct: 138 LPH 140
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164
GA+ H+HP E Y + G S + G+V P + H+ N+GD
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 165 EPATIFGSFNSQN 177
EP F +
Sbjct: 327 EPLVFLEIFKDDH 339
>pdb|3S0M|A Chain A, A Structural Element That Modulates Proton-Coupled
Electron Transfer In Oxalate Decarboxylase
Length = 377
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154
++ V L+ GAI H+H A E AY++ GS VD R F + +G++ FP G
Sbjct: 74 LASVNMRLKPGAIRELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG 132
Query: 155 LMH 157
L H
Sbjct: 133 LPH 135
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164
GA+ H+HP E Y + G S + G+V P + H+ N+GD
Sbjct: 262 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 321
Query: 165 EPATIFGSFNSQN 177
EP F +
Sbjct: 322 EPLVFLEIFKDDH 334
>pdb|2UY8|A Chain A, R92a Mutant Of Bacillus Subtilis Oxalate Decarboxylase
Oxdc
Length = 385
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154
++ V L+ GAI H+H A E AY++ GS VD R F + +G++ FP G
Sbjct: 79 LASVNMRLKPGAIAELHWHKEA-EWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSG 137
Query: 155 LMH 157
L H
Sbjct: 138 LPH 140
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164
GA+ H+HP E Y + G S + G+V P + H+ N+GD
Sbjct: 267 GAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGD 326
Query: 165 EPATIFGSFNSQN 177
EP F +
Sbjct: 327 EPLVFLEIFKDDH 339
>pdb|3KGL|A Chain A, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|B Chain B, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|C Chain C, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|D Chain D, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|E Chain E, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
pdb|3KGL|F Chain F, Crystal Structure Of Procruciferin, 11s Globulin From
Brassica Napus
Length = 466
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 82 VNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV-DSSSRVFA 140
+N P + L +S +R +R A+ P ++ A + YV G + V D+ RVF
Sbjct: 310 LNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFD 369
Query: 141 RVIKQGEVMVFPRG 154
+ QG+++ P+G
Sbjct: 370 GQVSQGQLLSIPQG 383
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 90 INTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFARVIKQGEV 148
+ LG+S +L A+ PH++ A I Y ++G + VDS+ +RV+ +++G V
Sbjct: 367 LRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHV 426
Query: 149 MVFPRGL 155
+V P+
Sbjct: 427 LVVPQNF 433
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 87 FPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFARVIKQ 145
FP ++ L +S LR A+ PH++ A I Y + G V+ + RVF +++
Sbjct: 330 FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE 389
Query: 146 GEVMVFPRGLM 156
G V++ P+ +
Sbjct: 390 GRVLIVPQNFV 400
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 87 FPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFARVIKQ 145
FP ++ L +S LR A+ PH++ A I Y + G V+ + RVF +++
Sbjct: 330 FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE 389
Query: 146 GEVMVFPRGLM 156
G V++ P+ +
Sbjct: 390 GRVLIVPQNFV 400
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 87 FPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFARVIKQ 145
FP ++ L +S LR A+ PH++ A I Y + G V+ + RVF +++
Sbjct: 330 FPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQE 389
Query: 146 GEVMVFPRGLM 156
G V++ P+ +
Sbjct: 390 GRVLIVPQNFV 400
>pdb|1J58|A Chain A, Crystal Structure Of Oxalate Decarboxylase
Length = 385
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 26/73 (35%)
Query: 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164
GA H+HP E Y + G S + G+V P H+ N+GD
Sbjct: 267 GAXRELHWHPNTHEWQYYISGKARXTVFASDGHARTFNYQAGDVGYVPFAXGHYVENIGD 326
Query: 165 EPATIFGSFNSQN 177
EP F +
Sbjct: 327 EPLVFLEIFKDDH 339
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 82 VNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFA 140
+N P + G+S L I PH++ A + YV +G V+ + VF
Sbjct: 353 LNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFD 412
Query: 141 RVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSGIDVELLEKA 200
+++G+++V P+ + + G E + F + + +F I E+L +
Sbjct: 413 GELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVF-RAIPSEVLSNS 469
Query: 201 FGLSPKQIGTMR 212
+ L Q+ ++
Sbjct: 470 YNLGQSQVRQLK 481
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 88 PGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV------------DSS 135
P + G++ + L ++ P + P ++ VVQG GF S
Sbjct: 37 PELQCAGVTVSKRTLNRNGLHLPSYSP-YPQMIIVVQGKGAIGFAFPGCPETFEKPQQQS 95
Query: 136 SRVFARVIKQ-------------GEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQ 181
SR +R +Q G+V+V P G+ ++ N GDEP ++ N NQ
Sbjct: 96 SRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQ 154
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 88 PGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV------------DSS 135
P + G++ + L ++ P + P ++ VVQG GF S
Sbjct: 38 PELQCAGVTVSKRTLNRNGLHLPSYSP-YPQMIIVVQGKGAIGFAFPGCPETFEKPQQQS 96
Query: 136 SRVFARVIKQ-------------GEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQ 181
SR +R +Q G+V+V P G+ ++ N GDEP ++ N NQ
Sbjct: 97 SRRGSRSQQQLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAISLLDTSNFNNQ 155
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 82 VNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFA 140
+N P + G+S L I PH++ A + YV +G V+ + VF
Sbjct: 354 LNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNXQGNAVFD 413
Query: 141 RVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSGIDVELLEKA 200
+++G+++V P+ + + G E + F + + +F I E+L +
Sbjct: 414 GELRRGQLLVVPQNFVVAEQ--GGEQGLEYVVFKTHHNAVSSYIKDVF-RAIPSEVLSNS 470
Query: 201 FGLSPKQIGTMR 212
+ L Q+ ++
Sbjct: 471 YNLGQSQVRQLK 482
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 82 VNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV-DSSSRVFA 140
VN P + L +S + L A+ PH++ A I Y V+G V D VF
Sbjct: 310 VNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFD 369
Query: 141 RVIKQGEVMVFPR 153
+ +G+++V P+
Sbjct: 370 EELSRGQLVVVPQ 382
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 131 FVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQ 181
F D ++ R +++G++ P G+ H+ N GD+P ++ N NQ
Sbjct: 124 FQDQHQKI--RHLREGDIFAMPAGVSHWAYNNGDQPLVAVILIDTANHANQ 172
>pdb|2EVX|A Chain A, Crystal Structure Of Pumpkin Seed Globulin
pdb|2E9Q|A Chain A, Recombinant Pro-11s Globulin Of Pumpkin
Length = 459
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 82 VNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDS-SSRVFA 140
N P + + +S R L A+ PH+ + + Y +G+ VD+ VF
Sbjct: 309 ANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFD 368
Query: 141 RVIKQGEVMVFPRGLM 156
+++G+V++ P+ +
Sbjct: 369 GEVREGQVLMIPQNFV 384
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 126 SVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIP 184
S S F D ++ R ++G+++V P G+ H+ N G + +++N NQ P
Sbjct: 116 SAGSAFKDQHQKI--RPFREGDLLVVPAGVSHWMYNRGQSDLVLIVFADTRNVANQIDP 172
>pdb|3EHK|A Chain A, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|B Chain B, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|C Chain C, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|D Chain D, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|E Chain E, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3EHK|F Chain F, Crystal Structure Of Pru Du Amandin, An Allergenic Protein
From Prunus Dulcis
pdb|3FZ3|A Chain A, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|B Chain B, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|C Chain C, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|D Chain D, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|E Chain E, Crystal Structure Of Almond Pru1 Protein
pdb|3FZ3|F Chain F, Crystal Structure Of Almond Pru1 Protein
Length = 531
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 82 VNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFA 140
+N P + L +S R I PH++ A + YV++G+ V+ + +
Sbjct: 381 LNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILD 440
Query: 141 RVIKQGEVMVFPR 153
+ ++QG++ + P+
Sbjct: 441 QEVQQGQLFIVPQ 453
>pdb|4EPA|A Chain A, The Crystal Structure Of The Ferric Yersiniabactin
Uptake Receptor Fyua From Yersinia Pestis
Length = 655
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 45 LTILPCKNSSEATTDDFVFSGLKSAGNFSDTGLATIPVNPTVFPGIN 91
L + K SS + + + V S + SA SD G+ P V PG+N
Sbjct: 14 LVVTASKQSSRSASANNVSSTVVSAPELSDAGVTASDKLPRVLPGLN 60
>pdb|2X9P|A Chain A, X-Ray Structure Of The Substrate-Free Cytochrome P450 Pimd
- A Polyene Macrolide Antibiotic Pimaricin Epoxidase
pdb|2XBK|A Chain A, X-Ray Structure Of The Substrate-Bound Cytochrome P450
Pimd - A Polyene Macrolide Antibiotic Pimaricin
Epoxidase
Length = 404
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 53/152 (34%), Gaps = 34/152 (22%)
Query: 52 NSSEATTDD-------FVFSGLKSAGNFSDTGLATIPVNPTVFPGINTLGMSFVRADLRV 104
N E T D +F+GL S + D G+ + +P D R
Sbjct: 222 NDGELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHP----------------DQRA 265
Query: 105 GAINPPHFHPRATEIAYVVQ---GSVYSGFVDSSSRVFARV-IKQGEVMVFPRGLMHFQM 160
A+ P RA E GSV S F V I+ G++++F GL +F
Sbjct: 266 AALADPDVMARAVEEVLRTARAGGSVLPPRYASEDMEFGGVTIRAGDLVLFDLGLPNFDE 325
Query: 161 NVGDEPATIFGSFNSQNPGNQKIPSAIFGSGI 192
P F++ N P FG GI
Sbjct: 326 RAFTGPE----EFDAARTPN---PHLTFGHGI 350
>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|M Chain M, Architecture Of Mammalian Fatty Acid Synthase
Length = 295
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 90 INTLGMSFVRADLRVGA----INPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQ 145
+ +G++F +R+GA ++PP F P E+ VV+G Y+ V + +
Sbjct: 32 VEAVGLNFADHLMRLGAYLTRLHPP-FIP-GMEVVGVVEGRRYAALVPQGGLAERVAVPK 89
Query: 146 GEVMVFPRGL 155
G ++ P GL
Sbjct: 90 GALLPLPEGL 99
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 90 INTLGMSFVRADLRVGA----INPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQ 145
+ +G++F +R+GA ++PP F P E+ VV+G Y+ V + +
Sbjct: 32 VEAVGLNFADHLMRLGAYLTRLHPP-FIP-GMEVVGVVEGRRYAALVPQGGLAERVAVPK 89
Query: 146 GEVMVFPRGL 155
G ++ P GL
Sbjct: 90 GALLPLPEGL 99
>pdb|2AJ3|A Chain A, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
pdb|2AJ3|C Chain C, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
pdb|2AJ3|E Chain E, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
Length = 213
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 155 LMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSGIDVELLEKAFGLSPKQIGT 210
L +Q+ GD P + S ++ G +PS GSG E GL P+ T
Sbjct: 32 LAWYQLTPGDAPKLLMYSASTLQSG---VPSRFSGSGSGTEFTLTISGLQPEDFAT 84
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 88 PGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGS 126
P + L M +++ GA+ PHF+ +A I V +G+
Sbjct: 255 PQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNKGT 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,780,045
Number of Sequences: 62578
Number of extensions: 272573
Number of successful extensions: 480
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 46
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)