Query 048761
Match_columns 221
No_of_seqs 307 out of 1664
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 12:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03404 bicupin_oxalic bicup 99.9 4E-26 8.7E-31 207.6 19.3 159 51-214 204-362 (367)
2 PLN00212 glutelin; Provisional 99.9 1.7E-23 3.7E-28 195.5 17.9 140 74-215 327-469 (493)
3 TIGR03404 bicupin_oxalic bicup 99.9 6.1E-23 1.3E-27 186.8 17.9 151 55-214 32-185 (367)
4 PF00190 Cupin_1: Cupin; Inte 99.9 7.1E-23 1.5E-27 163.3 12.4 125 74-209 12-144 (144)
5 smart00835 Cupin_1 Cupin. This 99.9 2.1E-20 4.5E-25 149.4 16.9 133 74-208 9-145 (146)
6 PLN00212 glutelin; Provisional 99.8 5.4E-20 1.2E-24 172.1 16.6 140 74-216 60-251 (493)
7 COG2140 Thermophilic glucose-6 99.7 1.1E-16 2.4E-21 134.1 13.4 151 57-216 49-201 (209)
8 PF07883 Cupin_2: Cupin domain 99.5 4E-14 8.8E-19 98.5 7.4 70 99-173 2-71 (71)
9 COG1917 Uncharacterized conser 99.5 5.3E-13 1.1E-17 104.5 11.4 85 86-175 34-118 (131)
10 COG0662 {ManC} Mannose-6-phosp 99.5 7.4E-13 1.6E-17 103.7 11.4 83 93-180 34-116 (127)
11 PRK13290 ectC L-ectoine syntha 99.4 2.6E-12 5.7E-17 100.6 11.3 81 93-180 33-114 (125)
12 PRK04190 glucose-6-phosphate i 99.4 1.2E-11 2.7E-16 103.4 14.0 90 87-176 60-157 (191)
13 COG3837 Uncharacterized conser 99.3 1.7E-11 3.6E-16 98.4 9.4 91 85-182 34-127 (161)
14 PRK11171 hypothetical protein; 99.3 1.1E-10 2.5E-15 102.2 13.3 111 50-174 25-136 (266)
15 TIGR01479 GMP_PMI mannose-1-ph 99.2 9.3E-11 2E-15 110.2 12.0 78 94-176 375-452 (468)
16 PRK15460 cpsB mannose-1-phosph 99.2 1.1E-10 2.4E-15 109.8 11.6 78 93-175 383-460 (478)
17 PF01050 MannoseP_isomer: Mann 99.2 1.4E-10 3.1E-15 93.6 10.3 77 93-174 61-137 (151)
18 PRK09943 DNA-binding transcrip 99.2 2E-10 4.4E-15 95.1 11.3 76 93-174 105-181 (185)
19 COG4101 Predicted mannose-6-ph 99.1 9.2E-10 2E-14 84.7 9.6 83 94-179 45-128 (142)
20 TIGR03214 ura-cupin putative a 99.0 2.7E-09 5.9E-14 93.3 12.2 75 94-174 178-253 (260)
21 PRK11171 hypothetical protein; 99.0 1.9E-09 4.2E-14 94.5 11.0 75 94-174 183-258 (266)
22 TIGR03214 ura-cupin putative a 99.0 2.9E-09 6.2E-14 93.1 11.8 77 93-174 56-133 (260)
23 PF02041 Auxin_BP: Auxin bindi 99.0 8E-09 1.7E-13 82.4 10.4 81 94-175 43-128 (167)
24 PF06560 GPI: Glucose-6-phosph 98.7 1.7E-07 3.7E-12 77.8 12.0 84 92-175 47-146 (182)
25 PRK13264 3-hydroxyanthranilate 98.7 5.2E-08 1.1E-12 80.3 7.6 66 103-172 42-107 (177)
26 TIGR03037 anthran_nbaC 3-hydro 98.7 1.5E-07 3.2E-12 76.4 9.3 60 103-164 36-95 (159)
27 PF02311 AraC_binding: AraC-li 98.5 6.2E-07 1.3E-11 68.1 8.2 65 104-174 12-76 (136)
28 PF12973 Cupin_7: ChrR Cupin-l 98.5 4.5E-07 9.7E-12 66.8 6.3 81 75-171 8-88 (91)
29 PF11699 CENP-C_C: Mif2/CENP-C 98.4 2E-06 4.3E-11 63.1 8.9 73 94-172 11-84 (85)
30 PF03079 ARD: ARD/ARD' family; 98.4 2.1E-06 4.6E-11 69.8 9.9 67 108-175 85-151 (157)
31 TIGR02451 anti_sig_ChrR anti-s 98.4 1.4E-06 3E-11 74.3 8.5 72 95-176 127-198 (215)
32 PF14499 DUF4437: Domain of un 98.4 8.6E-07 1.9E-11 77.0 7.3 105 55-170 2-106 (251)
33 PRK15457 ethanolamine utilizat 98.3 4.9E-06 1.1E-10 71.2 10.7 71 94-174 156-226 (233)
34 PRK10371 DNA-binding transcrip 98.2 4.6E-06 9.9E-11 74.1 8.7 60 100-165 31-90 (302)
35 COG1791 Uncharacterized conser 98.2 1.3E-05 2.8E-10 65.5 9.7 71 109-181 89-159 (181)
36 TIGR02272 gentisate_1_2 gentis 98.1 1.4E-05 3E-10 72.3 9.6 76 94-174 80-155 (335)
37 PF06339 Ectoine_synth: Ectoin 98.1 4E-05 8.7E-10 59.7 10.4 82 92-179 32-113 (126)
38 PRK10296 DNA-binding transcrip 98.1 2.9E-05 6.3E-10 67.5 9.8 52 105-162 33-84 (278)
39 PF05523 FdtA: WxcM-like, C-te 98.0 8.7E-05 1.9E-09 58.5 10.8 95 76-176 15-112 (131)
40 PRK13500 transcriptional activ 98.0 2.4E-05 5.2E-10 69.7 8.5 55 104-164 57-111 (312)
41 TIGR02297 HpaA 4-hydroxyphenyl 98.0 2E-05 4.3E-10 68.6 7.5 61 105-170 33-93 (287)
42 PRK13501 transcriptional activ 98.0 2.6E-05 5.7E-10 68.3 8.0 56 103-164 26-81 (290)
43 COG4297 Uncharacterized protei 98.0 1.4E-05 3E-10 63.2 5.5 68 104-174 51-119 (163)
44 COG3257 GlxB Uncharacterized p 97.9 0.00012 2.6E-09 62.2 9.5 75 95-174 61-136 (264)
45 PRK13502 transcriptional activ 97.8 9.3E-05 2E-09 64.4 8.3 56 103-164 26-81 (282)
46 COG3435 Gentisate 1,2-dioxygen 97.8 4.7E-05 1E-09 67.4 6.1 91 80-175 72-167 (351)
47 PF05899 Cupin_3: Protein of u 97.8 7.1E-05 1.5E-09 53.2 5.6 59 95-160 7-65 (74)
48 PRK13503 transcriptional activ 97.7 6.7E-05 1.5E-09 64.9 6.5 54 104-163 24-77 (278)
49 KOG2107 Uncharacterized conser 97.7 0.00011 2.3E-09 59.8 6.4 58 108-166 86-143 (179)
50 PF06052 3-HAO: 3-hydroxyanthr 97.7 0.0005 1.1E-08 55.2 9.8 77 100-180 38-114 (151)
51 TIGR02272 gentisate_1_2 gentis 97.4 0.00058 1.3E-08 61.9 8.3 88 75-172 231-319 (335)
52 PF06249 EutQ: Ethanolamine ut 97.4 0.00034 7.5E-09 56.5 5.7 70 95-174 77-146 (152)
53 COG4766 EutQ Ethanolamine util 97.3 0.0026 5.7E-08 51.2 9.2 69 95-173 100-168 (176)
54 PF05995 CDO_I: Cysteine dioxy 97.1 0.0086 1.9E-07 49.4 11.4 82 94-175 74-164 (175)
55 COG1898 RfbC dTDP-4-dehydrorha 97.0 0.0069 1.5E-07 50.0 9.3 67 104-170 54-129 (173)
56 COG3450 Predicted enzyme of th 97.0 0.0012 2.7E-08 51.0 4.6 59 95-160 45-103 (116)
57 PF04209 HgmA: homogentisate 1 96.7 0.0093 2E-07 55.6 9.2 106 56-172 86-195 (424)
58 PF00908 dTDP_sugar_isom: dTDP 96.6 0.024 5.2E-07 46.9 9.6 77 103-180 51-139 (176)
59 TIGR01221 rmlC dTDP-4-dehydror 96.5 0.017 3.7E-07 47.8 8.6 77 103-180 52-139 (176)
60 PF14499 DUF4437: Domain of un 96.2 0.0036 7.8E-08 54.6 2.9 93 74-175 154-246 (251)
61 PF13621 Cupin_8: Cupin-like d 96.1 0.034 7.4E-07 46.8 8.6 69 97-166 132-236 (251)
62 COG3435 Gentisate 1,2-dioxygen 96.1 0.018 4E-07 51.3 6.9 65 101-172 267-331 (351)
63 PRK05341 homogentisate 1,2-dio 96.0 0.066 1.4E-06 50.1 10.1 58 109-172 147-204 (438)
64 TIGR01015 hmgA homogentisate 1 95.9 0.091 2E-06 49.1 10.7 62 108-174 140-201 (429)
65 COG3806 ChrR Transcriptional a 95.8 0.055 1.2E-06 45.5 8.1 87 74-175 112-198 (216)
66 PLN02658 homogentisate 1,2-dio 95.8 0.084 1.8E-06 49.4 10.2 107 56-172 88-197 (435)
67 PF07385 DUF1498: Protein of u 95.6 0.056 1.2E-06 46.3 7.5 76 98-175 90-188 (225)
68 PF02678 Pirin: Pirin; InterP 95.5 0.069 1.5E-06 40.7 7.0 64 105-172 39-105 (107)
69 PF08007 Cupin_4: Cupin superf 95.3 0.17 3.7E-06 45.4 10.1 67 96-163 114-200 (319)
70 PF12852 Cupin_6: Cupin 95.3 0.082 1.8E-06 43.3 7.3 44 117-163 36-79 (186)
71 COG3257 GlxB Uncharacterized p 95.2 0.082 1.8E-06 45.2 7.3 74 92-171 179-253 (264)
72 PRK10572 DNA-binding transcrip 95.0 0.096 2.1E-06 45.6 7.4 49 110-164 44-92 (290)
73 COG3822 ABC-type sugar transpo 95.0 0.13 2.8E-06 43.1 7.5 78 98-177 89-189 (225)
74 COG1741 Pirin-related protein 94.9 0.11 2.5E-06 45.9 7.5 72 99-174 48-123 (276)
75 PF13759 2OG-FeII_Oxy_5: Putat 94.7 0.11 2.5E-06 38.5 6.1 69 100-168 5-96 (101)
76 KOG3995 3-hydroxyanthranilate 94.6 0.057 1.2E-06 45.9 4.7 57 104-162 42-98 (279)
77 PF05118 Asp_Arg_Hydrox: Aspar 94.1 0.37 8.1E-06 39.1 8.4 83 84-171 67-156 (163)
78 PRK00924 5-keto-4-deoxyuronate 93.7 0.47 1E-05 42.0 8.8 83 93-177 173-261 (276)
79 PRK09685 DNA-binding transcrip 93.7 0.44 9.4E-06 41.6 8.7 66 94-164 44-114 (302)
80 TIGR02466 conserved hypothetic 93.6 0.36 7.8E-06 40.8 7.6 78 96-174 97-197 (201)
81 PRK12335 tellurite resistance 93.5 0.35 7.7E-06 42.5 7.9 61 103-163 19-82 (287)
82 PF02373 JmjC: JmjC domain, hy 93.5 0.15 3.2E-06 37.9 4.7 29 137-165 79-107 (114)
83 PF07847 DUF1637: Protein of u 93.2 0.47 1E-05 40.1 7.6 83 92-175 41-143 (200)
84 COG3508 HmgA Homogentisate 1,2 93.1 0.8 1.7E-05 41.9 9.3 73 93-171 123-195 (427)
85 PF05726 Pirin_C: Pirin C-term 93.0 0.53 1.1E-05 35.2 7.1 69 98-174 2-70 (104)
86 PF11142 DUF2917: Protein of u 92.6 0.53 1.2E-05 32.3 6.0 56 101-161 3-58 (63)
87 PF06172 Cupin_5: Cupin superf 92.5 2.7 5.8E-05 33.4 10.7 105 74-181 14-131 (139)
88 PF06865 DUF1255: Protein of u 92.3 1.2 2.7E-05 33.1 8.0 65 101-173 29-93 (94)
89 PF04962 KduI: KduI/IolB famil 92.2 1 2.3E-05 39.5 8.8 98 77-177 135-247 (261)
90 KOG3706 Uncharacterized conser 92.1 0.15 3.2E-06 48.3 3.4 60 103-163 325-405 (629)
91 COG5553 Predicted metal-depend 91.8 1 2.2E-05 36.9 7.6 77 95-173 73-155 (191)
92 KOG2757 Mannose-6-phosphate is 91.7 0.92 2E-05 41.7 8.0 75 94-174 332-406 (411)
93 PRK10579 hypothetical protein; 91.7 1.3 2.8E-05 33.0 7.5 53 115-172 40-92 (94)
94 PF14525 AraC_binding_2: AraC- 91.2 2.6 5.7E-05 32.8 9.6 72 94-170 33-104 (172)
95 PLN02288 mannose-6-phosphate i 90.2 0.94 2E-05 42.1 6.8 58 94-155 333-390 (394)
96 PRK15131 mannose-6-phosphate i 89.7 1.9 4.2E-05 40.0 8.5 59 94-160 320-378 (389)
97 PF09313 DUF1971: Domain of un 88.9 2.8 6.1E-05 30.4 7.1 48 117-164 26-75 (82)
98 TIGR00218 manA mannose-6-phosp 88.2 3.3 7.1E-05 36.9 8.6 60 93-160 233-292 (302)
99 PRK09391 fixK transcriptional 87.8 5.4 0.00012 33.6 9.4 122 94-216 35-204 (230)
100 COG2850 Uncharacterized conser 87.5 1.4 3E-05 40.6 5.8 62 101-163 125-203 (383)
101 PF00027 cNMP_binding: Cyclic 86.8 2 4.4E-05 29.5 5.3 47 101-149 3-51 (91)
102 PRK11753 DNA-binding transcrip 83.2 11 0.00024 30.7 8.9 119 98-217 21-194 (211)
103 PRK13918 CRP/FNR family transc 81.8 5.5 0.00012 32.3 6.6 53 99-151 8-62 (202)
104 PRK00924 5-keto-4-deoxyuronate 77.2 17 0.00036 32.3 8.4 52 116-172 73-127 (276)
105 PLN02868 acyl-CoA thioesterase 76.2 9.2 0.0002 35.4 6.9 53 98-151 32-84 (413)
106 COG1482 ManA Phosphomannose is 75.9 19 0.0004 32.6 8.5 59 94-160 241-299 (312)
107 PF04622 ERG2_Sigma1R: ERG2 an 75.2 6.8 0.00015 33.6 5.3 93 106-207 112-206 (216)
108 COG3123 Uncharacterized protei 75.0 10 0.00022 27.8 5.3 41 116-159 41-81 (94)
109 PRK03606 ureidoglycolate hydro 74.2 25 0.00054 28.7 8.1 64 109-172 72-140 (162)
110 PF04115 Ureidogly_hydro: Urei 73.5 19 0.00041 29.3 7.3 81 94-174 56-145 (165)
111 PF13640 2OG-FeII_Oxy_3: 2OG-F 72.7 17 0.00036 26.1 6.3 63 100-162 4-86 (100)
112 PF04962 KduI: KduI/IolB famil 70.9 24 0.00053 30.9 7.9 69 95-170 27-103 (261)
113 KOG2130 Phosphatidylserine-spe 70.4 6.8 0.00015 35.6 4.3 45 137-181 261-305 (407)
114 TIGR00218 manA mannose-6-phosp 69.6 2.6 5.7E-05 37.4 1.6 19 140-158 152-170 (302)
115 smart00100 cNMP Cyclic nucleot 69.3 22 0.00048 24.8 6.3 53 98-151 18-71 (120)
116 PHA02890 hypothetical protein; 69.0 39 0.00085 29.8 8.5 42 119-161 95-136 (278)
117 cd00038 CAP_ED effector domain 68.6 20 0.00043 25.0 5.9 52 98-150 18-70 (115)
118 PHA02984 hypothetical protein; 65.8 40 0.00087 29.9 8.0 50 119-170 96-145 (286)
119 COG1482 ManA Phosphomannose is 65.4 5.5 0.00012 36.0 2.7 21 140-160 159-179 (312)
120 PRK15186 AraC family transcrip 65.2 22 0.00047 31.6 6.5 46 117-166 39-84 (291)
121 PRK10402 DNA-binding transcrip 63.7 23 0.00049 29.6 6.1 52 99-151 33-85 (226)
122 PRK11161 fumarate/nitrate redu 63.1 61 0.0013 26.9 8.6 51 100-151 40-91 (235)
123 PRK15131 mannose-6-phosphate i 63.0 6.2 0.00013 36.6 2.7 21 140-160 238-258 (389)
124 PRK09392 ftrB transcriptional 62.8 33 0.00072 28.6 7.0 51 99-150 32-82 (236)
125 COG0664 Crp cAMP-binding prote 61.8 28 0.00061 27.6 6.2 57 96-153 22-79 (214)
126 KOG1417 Homogentisate 1,2-diox 56.8 1.6E+02 0.0034 26.9 12.4 72 108-184 147-220 (446)
127 PRK13395 ureidoglycolate hydro 54.5 87 0.0019 25.8 7.8 64 109-172 72-141 (171)
128 COG3718 IolB Uncharacterized e 54.0 1.1E+02 0.0024 26.8 8.5 77 86-165 22-103 (270)
129 TIGR03697 NtcA_cyano global ni 53.1 31 0.00067 27.5 5.0 35 116-150 11-46 (193)
130 KOG4281 Uncharacterized conser 52.1 6.7 0.00015 33.6 0.9 41 92-132 72-112 (236)
131 COG3717 KduI 5-keto 4-deoxyuro 50.5 67 0.0015 28.1 6.7 82 94-177 176-263 (278)
132 PF13464 DUF4115: Domain of un 48.5 89 0.0019 21.6 7.3 48 122-170 4-52 (77)
133 KOG2131 Uncharacterized conser 47.2 22 0.00047 33.0 3.4 60 104-165 207-294 (427)
134 PF07172 GRP: Glycine rich pro 44.5 17 0.00037 27.0 2.0 11 1-11 1-11 (95)
135 PRK10202 ebgC cryptic beta-D-g 44.0 1.6E+02 0.0035 23.4 8.7 52 109-160 58-127 (149)
136 KOG3416 Predicted nucleic acid 43.2 94 0.002 24.5 5.9 65 88-161 12-80 (134)
137 PF06719 AraC_N: AraC-type tra 42.2 1.7E+02 0.0037 23.1 9.3 70 94-172 5-77 (155)
138 COG1741 Pirin-related protein 41.9 2.5E+02 0.0054 24.9 12.5 42 87-130 166-207 (276)
139 TIGR00022 uncharacterized prot 41.8 1.3E+02 0.0029 23.5 6.9 25 108-132 61-85 (142)
140 KOG0498 K+-channel ERG and rel 41.1 40 0.00088 34.0 4.5 49 100-149 445-493 (727)
141 PLN03192 Voltage-dependent pot 41.0 56 0.0012 33.1 5.7 53 96-149 396-448 (823)
142 PF14801 GCD14_N: tRNA methylt 40.8 60 0.0013 21.7 3.9 30 128-157 11-40 (54)
143 PLN02288 mannose-6-phosphate i 40.1 21 0.00046 33.3 2.3 20 141-160 253-272 (394)
144 PF02796 HTH_7: Helix-turn-hel 37.9 40 0.00087 21.0 2.7 29 186-214 16-44 (45)
145 COG2731 EbgC Beta-galactosidas 37.3 1.8E+02 0.0039 23.5 7.0 53 109-161 62-134 (154)
146 PRK02290 3-dehydroquinate synt 35.8 2E+02 0.0043 26.5 7.7 84 74-161 250-336 (344)
147 PF05721 PhyH: Phytanoyl-CoA d 34.8 69 0.0015 25.2 4.3 27 139-165 180-207 (211)
148 KOG0500 Cyclic nucleotide-gate 34.0 74 0.0016 30.7 4.8 32 116-149 348-379 (536)
149 PHA00672 hypothetical protein 31.6 2.6E+02 0.0057 22.1 7.8 69 94-169 46-114 (152)
150 PF04074 DUF386: Domain of unk 31.4 2.6E+02 0.0056 22.0 8.2 67 94-160 45-134 (153)
151 KOG1356 Putative transcription 28.8 21 0.00045 36.3 0.3 61 101-164 761-824 (889)
152 PF13348 Y_phosphatase3C: Tyro 28.3 40 0.00087 22.7 1.6 25 191-215 43-67 (68)
153 PF13384 HTH_23: Homeodomain-l 27.0 80 0.0017 19.5 2.8 27 191-217 17-43 (50)
154 PF12937 F-box-like: F-box-lik 26.9 86 0.0019 19.2 2.9 21 191-211 3-24 (47)
155 PRK05467 Fe(II)-dependent oxyg 26.4 1.9E+02 0.0041 24.8 5.7 24 140-163 142-165 (226)
156 PRK14585 pgaD putative PGA bio 26.1 74 0.0016 25.3 2.9 25 190-214 88-112 (137)
157 PF13994 PgaD: PgaD-like prote 25.7 78 0.0017 24.8 3.1 23 192-214 101-123 (138)
158 PF02787 CPSase_L_D3: Carbamoy 25.5 61 0.0013 25.1 2.4 26 191-216 72-97 (123)
159 KOG0501 K+-channel KCNQ [Inorg 24.7 1.1E+02 0.0024 30.4 4.4 59 94-161 568-626 (971)
160 PF13613 HTH_Tnp_4: Helix-turn 24.2 68 0.0015 20.7 2.1 25 190-214 18-42 (53)
161 COG3542 Uncharacterized conser 23.9 4E+02 0.0087 21.7 13.5 88 95-187 44-139 (162)
162 KOG2132 Uncharacterized conser 22.9 67 0.0014 29.4 2.4 76 86-162 241-349 (355)
163 COG3758 Uncharacterized protei 22.5 3.6E+02 0.0078 22.7 6.5 39 114-155 58-97 (193)
164 PF01987 AIM24: Mitochondrial 22.5 2.2E+02 0.0047 23.5 5.4 42 118-160 131-172 (215)
165 TIGR02408 ectoine_ThpD ectoine 21.8 1.1E+02 0.0024 26.6 3.6 38 140-177 212-251 (277)
166 KOG1633 F-box protein JEMMA an 21.6 98 0.0021 31.5 3.5 75 101-176 142-233 (776)
167 PF01959 DHQS: 3-dehydroquinat 21.6 2.8E+02 0.0061 25.6 6.1 85 74-162 260-347 (354)
168 PF00166 Cpn10: Chaperonin 10 21.3 2.7E+02 0.0058 20.1 5.0 35 124-161 42-76 (93)
169 PF15240 Pro-rich: Proline-ric 20.6 81 0.0018 26.2 2.3 21 5-25 2-22 (179)
170 PRK14584 hmsS hemin storage sy 20.4 1.1E+02 0.0025 24.7 3.0 24 191-214 98-121 (153)
171 PF01238 PMI_typeI: Phosphoman 20.2 69 0.0015 29.5 2.0 21 141-161 252-272 (373)
No 1
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.94 E-value=4e-26 Score=207.61 Aligned_cols=159 Identities=18% Similarity=0.273 Sum_probs=141.9
Q ss_pred CCCCCCCCCCeEEecCCCCCCcCCCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEE
Q 048761 51 KNSSEATTDDFVFSGLKSAGNFSDTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSG 130 (221)
Q Consensus 51 k~~~~vt~~df~~~~l~~~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~ 130 (221)
+.+..-.+..|+|+....++.. ..|++++.++..++|+++ ++++++++++||+..++|||++++|++||++|+++++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~p~~-~~gG~~~~~~~~~~p~~~--~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~ 280 (367)
T TIGR03404 204 TGPAGEVPGPFTYHLSEQKPKQ-VPGGTVRIADSTNFPVSK--TIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMT 280 (367)
T ss_pred cCCCCCCCccEEEEhhhCCcee-cCCceEEEEChhhccCcc--eEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEE
Confidence 3444455667999976666543 778899999999999987 4899999999999999999999999999999999999
Q ss_pred EEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCCCCceecccchhcCCCCHHHHHHHhCCCHHHHHH
Q 048761 131 FVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSGIDVELLEKAFGLSPKQIGT 210 (221)
Q Consensus 131 ~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg~~~~~~~lf~~~~p~evla~af~~~~~~v~~ 210 (221)
+.+++++.+.+.+++||+++||+|..|+++|.|+++++++++|++..++.+.++.++. .+|++||+++|+++.+++++
T Consensus 281 v~d~~g~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL~if~s~~~~~i~l~~~l~--~~p~~vl~~~~~~~~~~~~~ 358 (367)
T TIGR03404 281 VFAAGGNARTFDYQAGDVGYVPRNMGHYVENTGDETLVFLEVFKADRFADVSLNQWLA--LTPPQLVAAHLNLDDEVIDS 358 (367)
T ss_pred EEecCCcEEEEEECCCCEEEECCCCeEEEEECCCCCEEEEEEECCCCCceeEHHHHHh--hCCHHHHHHHhCcCHHHHHh
Confidence 9877776667999999999999999999999999999999999999999999988774 59999999999999999999
Q ss_pred hhhc
Q 048761 211 MRRR 214 (221)
Q Consensus 211 l~~~ 214 (221)
|++.
T Consensus 359 l~~~ 362 (367)
T TIGR03404 359 LKKE 362 (367)
T ss_pred cccc
Confidence 9875
No 2
>PLN00212 glutelin; Provisional
Probab=99.91 E-value=1.7e-23 Score=195.51 Aligned_cols=140 Identities=20% Similarity=0.356 Sum_probs=124.6
Q ss_pred CCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCC-CceEEEEecCCcEEEEc
Q 048761 74 DTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFARVIKQGEVMVFP 152 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~-~k~~~~~L~~GDv~~~P 152 (221)
+.++.++.++..++|+|+++++++.+++|.||++.+||||++|+|++||++|++++++++++ ++++...|++||+++||
T Consensus 327 ~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVP 406 (493)
T PLN00212 327 PRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIP 406 (493)
T ss_pred CCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEEC
Confidence 88999999999999999999999999999999999999999999999999999999999877 57888999999999999
Q ss_pred CCCeEEEEecCCCCEEEEEEEcCCCCCceecc--cchhcCCCCHHHHHHHhCCCHHHHHHhhhcC
Q 048761 153 RGLMHFQMNVGDEPATIFGSFNSQNPGNQKIP--SAIFGSGIDVELLEKAFGLSPKQIGTMRRRF 215 (221)
Q Consensus 153 ~G~~H~~~N~g~~~a~~l~v~ss~~pg~~~~~--~~lf~~~~p~evla~af~~~~~~v~~l~~~~ 215 (221)
+|.+|..... ++...+++...+.++-...++ .++|+ .||.+||++||+++.+++++||..+
T Consensus 407 qg~~v~~~A~-~egfe~v~F~tna~~~~s~laG~~Sv~~-alp~eVla~Af~is~eea~~lk~n~ 469 (493)
T PLN00212 407 QHYAVLKKAE-REGCQYIAFKTNANAMVSHIAGKNSIFR-ALPVDVIANAYRISREEARRLKNNR 469 (493)
T ss_pred CCCeEEEeec-CCceEEEEeecCCCccccccccHHHHHH-hCCHHHHHHHcCCCHHHHHHHHhcc
Confidence 9999987654 566777776666554333332 68998 9999999999999999999999885
No 3
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.90 E-value=6.1e-23 Score=186.81 Aligned_cols=151 Identities=23% Similarity=0.334 Sum_probs=127.0
Q ss_pred CCCCCCeEEecCCCCCCcCCCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeC
Q 048761 55 EATTDDFVFSGLKSAGNFSDTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDS 134 (221)
Q Consensus 55 ~vt~~df~~~~l~~~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~ 134 (221)
.+....|.|+.-+++ . ..|+.++.++..++|++++ +++.+++++||+..++|||. +.|++||++|+++++++++
T Consensus 32 ~~p~~~~~~~~~~~~--~-~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH~-~~E~~yVl~G~~~v~~~d~ 105 (367)
T TIGR03404 32 SVPNLKWSFSDSHNR--L-ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWHK-EAEWAYVLYGSCRITAVDE 105 (367)
T ss_pred ccccceeeeccccCc--c-ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccCC-CceEEEEEeeEEEEEEEcC
Confidence 444444555532222 1 5688999999999999986 79999999999999999995 7899999999999999987
Q ss_pred CCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCC---CCceecccchhcCCCCHHHHHHHhCCCHHHHHHh
Q 048761 135 SSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQN---PGNQKIPSAIFGSGIDVELLEKAFGLSPKQIGTM 211 (221)
Q Consensus 135 ~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~---pg~~~~~~~lf~~~~p~evla~af~~~~~~v~~l 211 (221)
+++.+.+.|++||+++||+|.+|+++|.+ +.+.++.+|++.+ ++.+.+..+ |+ .+|++||+|+|+++.+++++|
T Consensus 106 ~g~~~~~~L~~GD~~~fP~g~~H~~~n~~-~~~~~l~vf~~~~f~~~~~~~~~~~-l~-~~p~~Vla~~f~l~~~~~~~l 182 (367)
T TIGR03404 106 NGRNYIDDVGAGDLWYFPPGIPHSLQGLD-EGCEFLLVFDDGNFSEDGTFLVTDW-LA-HTPKDVLAKNFGVPESAFDNL 182 (367)
T ss_pred CCcEEEeEECCCCEEEECCCCeEEEEECC-CCeEEEEEeCCcccCCcceeeHHHH-HH-hCCHHHHHHHhCCCHHHHHhc
Confidence 78887778999999999999999999985 5688888888753 556777765 46 699999999999999999999
Q ss_pred hhc
Q 048761 212 RRR 214 (221)
Q Consensus 212 ~~~ 214 (221)
++.
T Consensus 183 ~~~ 185 (367)
T TIGR03404 183 PLK 185 (367)
T ss_pred ccc
Confidence 875
No 4
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.89 E-value=7.1e-23 Score=163.34 Aligned_cols=125 Identities=34% Similarity=0.579 Sum_probs=108.7
Q ss_pred CCCeEEEEecCCCCCCcccc-ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCC-----ceEEEE--ecC
Q 048761 74 DTGLATIPVNPTVFPGINTL-GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSS-----RVFARV--IKQ 145 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~-g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~-----k~~~~~--L~~ 145 (221)
..++.++.++..++|.+... ++.+.+..++||++..|||| ++.|+.||++|+++++++.+++ +..... +++
T Consensus 12 ~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~ 90 (144)
T PF00190_consen 12 NEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKA 90 (144)
T ss_dssp ETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEET
T ss_pred CCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccccceeeeceeeeec
Confidence 78999999999999965554 56677777899999999999 8999999999999999998765 344566 999
Q ss_pred CcEEEEcCCCeEEEEecCCCCEEEEEEEcCCCCCceecccchhcCCCCHHHHHHHhCCCHHHHH
Q 048761 146 GEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSGIDVELLEKAFGLSPKQIG 209 (221)
Q Consensus 146 GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg~~~~~~~lf~~~~p~evla~af~~~~~~v~ 209 (221)
||++++|+|.+||+.|.++++...+.++.+.+|..+ +|+|+++++|+++.++++
T Consensus 91 Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~----------l~~~v~~~~F~~~~~~~~ 144 (144)
T PF00190_consen 91 GDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ----------LPPEVLAKAFFLSGEEVQ 144 (144)
T ss_dssp TEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE----------SSHHHHHHHEESSHHHHB
T ss_pred ccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc----------CCcHHHHHhcCCCcCcCC
Confidence 999999999999999999888999999998888776 899999999999998863
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.86 E-value=2.1e-20 Score=149.43 Aligned_cols=133 Identities=38% Similarity=0.740 Sum_probs=115.8
Q ss_pred CCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCC-CceEEEEecCCcEEEEc
Q 048761 74 DTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-SRVFARVIKQGEVMVFP 152 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~-~k~~~~~L~~GDv~~~P 152 (221)
..|+.++.++...+|.+++.++.+.+++++||+..++|+|++..|++||++|++++.+.+.. ++.+.+.+++||++++|
T Consensus 9 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip 88 (146)
T smart00835 9 NEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVP 88 (146)
T ss_pred CCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEEC
Confidence 67888898988899999999999999999999999999998789999999999999987643 34457999999999999
Q ss_pred CCCeEEEEecCCCCEEEEEEEcCCCCCce---ecccchhcCCCCHHHHHHHhCCCHHHH
Q 048761 153 RGLMHFQMNVGDEPATIFGSFNSQNPGNQ---KIPSAIFGSGIDVELLEKAFGLSPKQI 208 (221)
Q Consensus 153 ~G~~H~~~N~g~~~a~~l~v~ss~~pg~~---~~~~~lf~~~~p~evla~af~~~~~~v 208 (221)
+|..|++.|.++++++++ ++.+++|... ....++|+ ++++++++++|+++++++
T Consensus 89 ~g~~H~~~n~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 145 (146)
T smart00835 89 QGHPHFQVNSGDENLEFV-AFNTNDPNRRFFLAGRNSVLR-GLPPEVLAAAFGVSAEEV 145 (146)
T ss_pred CCCEEEEEcCCCCCEEEE-EEecCCCCceeEeecccchhh-cCCHHHHHHHhCcChHHc
Confidence 999999999999999999 5666777653 12246776 999999999999999875
No 6
>PLN00212 glutelin; Provisional
Probab=99.84 E-value=5.4e-20 Score=172.05 Aligned_cols=140 Identities=20% Similarity=0.353 Sum_probs=118.0
Q ss_pred CCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCC-----Cce----------
Q 048761 74 DTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS-----SRV---------- 138 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~-----~k~---------- 138 (221)
..|+ +++.+..+.+.|.+.|+++.|++++|+++.+||+| ++.+++||++|++.++++.++ .+.
T Consensus 60 se~G-~~E~~~~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~ 137 (493)
T PLN00212 60 SEAG-VTEYFDEKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQS 137 (493)
T ss_pred ccCc-eeeecCCCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccc
Confidence 3344 67888889999999999999999999999999999 599999999999999999642 111
Q ss_pred ----------EEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCCCCc--------eec-----------------
Q 048761 139 ----------FARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGN--------QKI----------------- 183 (221)
Q Consensus 139 ----------~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg~--------~~~----------------- 183 (221)
..+.|++||++++|+|++||++|.|+++++++++++..|+.. +.+
T Consensus 138 ~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~~~~~ 217 (493)
T PLN00212 138 QSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGRSIEQ 217 (493)
T ss_pred cccccccccccceEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccccccc
Confidence 126999999999999999999999999999999998655332 111
Q ss_pred --ccchhcCCCCHHHHHHHhCCCHHHHHHhhhcCC
Q 048761 184 --PSAIFGSGIDVELLEKAFGLSPKQIGTMRRRFD 216 (221)
Q Consensus 184 --~~~lf~~~~p~evla~af~~~~~~v~~l~~~~~ 216 (221)
+.++|+ +|..++|++||+++.++++||+....
T Consensus 218 ~~~~nifs-GF~~e~La~Afnv~~e~~~klq~~~d 251 (493)
T PLN00212 218 HSGQNIFS-GFSTELLSEALGINAQVAKRLQSQND 251 (493)
T ss_pred cccCchhh-cCCHHHHHHHHCCCHHHHHHHhcccc
Confidence 245998 99999999999999999999986643
No 7
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=134.05 Aligned_cols=151 Identities=25% Similarity=0.413 Sum_probs=129.3
Q ss_pred CCCCeEEecCCCCCCcCCCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcE--EEEEEeCcEEEEEEeC
Q 048761 57 TTDDFVFSGLKSAGNFSDTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATE--IAYVVQGSVYSGFVDS 134 (221)
Q Consensus 57 t~~df~~~~l~~~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E--~~yVl~G~~~v~~~~~ 134 (221)
..+||+|..+..... ..++.+.......+|+. .-..+.+.||++...||||.++| +.||++|++.+.+.++
T Consensus 49 ~~~~~~yel~~~~~~--~~~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~ 121 (209)
T COG2140 49 KEDDFVYELLESEPG--ERGGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKP 121 (209)
T ss_pred CCCceEEEeeccccc--ccCCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcC
Confidence 678899886544322 34888888888888877 45677899999999999999999 9999999999999998
Q ss_pred CCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCCCCceecccchhcCCCCHHHHHHHhCCCHHHHHHhhhc
Q 048761 135 SSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQKIPSAIFGSGIDVELLEKAFGLSPKQIGTMRRR 214 (221)
Q Consensus 135 ~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg~~~~~~~lf~~~~p~evla~af~~~~~~v~~l~~~ 214 (221)
+|+.....+++||++++|++..|+..|+|+++++++.++....+....+..++++ ++..+++..++.+.+.++.++-+
T Consensus 122 ~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~D~p~~~ 199 (209)
T COG2140 122 EGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPADAGQDYDLIAWLGG--MPPVLVENGLNKNPKYVDVPRIK 199 (209)
T ss_pred CCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCCCCceeeeeehhcc--CCceeeccccccCcccccCcccc
Confidence 8988889999999999999999999999999999999999877666666666664 99999999999888888887666
Q ss_pred CC
Q 048761 215 FD 216 (221)
Q Consensus 215 ~~ 216 (221)
+.
T Consensus 200 ~~ 201 (209)
T COG2140 200 FA 201 (209)
T ss_pred cc
Confidence 55
No 8
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=99.52 E-value=4e-14 Score=98.48 Aligned_cols=70 Identities=31% Similarity=0.480 Sum_probs=63.6
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEE
Q 048761 99 RADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSF 173 (221)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ 173 (221)
+++++||+..++|+|+...|++||++|++++.+. ++ ...+++||.+++|+|..|...|.+++++++++++
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~~~---~~--~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLTVD---GE--RVELKPGDAIYIPPGVPHQVRNPGDEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEEET---TE--EEEEETTEEEEEETTSEEEEEEESSSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEEEc---cE--EeEccCCEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence 5789999999999999655999999999999953 45 4999999999999999999999999999999885
No 9
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.47 E-value=5.3e-13 Score=104.47 Aligned_cols=85 Identities=28% Similarity=0.462 Sum_probs=73.6
Q ss_pred CCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCC
Q 048761 86 VFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDE 165 (221)
Q Consensus 86 ~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 165 (221)
-.+...+..+.+.+++++||+..++|+||...+.+||++|+++++.. ++ .+.+++||++++|+|..|+..|.++.
T Consensus 34 ~~~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~---g~--~~~l~~Gd~i~ip~g~~H~~~a~~~~ 108 (131)
T COG1917 34 VLPRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE---GE--KKELKAGDVIIIPPGVVHGLKAVEDE 108 (131)
T ss_pred eccCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec---CC--ceEecCCCEEEECCCCeeeeccCCCC
Confidence 34444556789999999999999999998668999999999999987 44 39999999999999999999999988
Q ss_pred CEEEEEEEcC
Q 048761 166 PATIFGSFNS 175 (221)
Q Consensus 166 ~a~~l~v~ss 175 (221)
+.+.|+++..
T Consensus 109 ~~~~l~v~~~ 118 (131)
T COG1917 109 PMVLLLVFPL 118 (131)
T ss_pred ceeEEEEeee
Confidence 8777777765
No 10
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=7.4e-13 Score=103.71 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=74.6
Q ss_pred cceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 93 LGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 93 ~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
...++.++.++||+...+|.|.+.+|++||++|++.+.+. ++ ...|++||++++|+|..|+..|.|..++.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~---~~--~~~v~~gd~~~iP~g~~H~~~N~G~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG---GE--EVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCcceEEEEE
Confidence 4689999999999999998888889999999999999987 45 499999999999999999999999999999999
Q ss_pred EcCCCCCc
Q 048761 173 FNSQNPGN 180 (221)
Q Consensus 173 ~ss~~pg~ 180 (221)
......+.
T Consensus 109 ~~p~~~~e 116 (127)
T COG0662 109 QSPPYLGE 116 (127)
T ss_pred ecCCcCCC
Confidence 87655443
No 11
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=99.41 E-value=2.6e-12 Score=100.63 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=70.4
Q ss_pred cceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEE-EEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEE
Q 048761 93 LGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSG-FVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFG 171 (221)
Q Consensus 93 ~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~-~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 171 (221)
.++++.+++++||+..+.|+|.. .|++||++|++++. +.+ ++ .+.|++||++++|++.+|++.|. +++++|+
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~--g~--~~~L~aGD~i~~~~~~~H~~~N~--e~~~~l~ 105 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLAT--GE--VHPIRPGTMYALDKHDRHYLRAG--EDMRLVC 105 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCC--CE--EEEeCCCeEEEECCCCcEEEEcC--CCEEEEE
Confidence 46899999999999999999974 79999999999998 531 45 49999999999999999999997 8999999
Q ss_pred EEcCCCCCc
Q 048761 172 SFNSQNPGN 180 (221)
Q Consensus 172 v~ss~~pg~ 180 (221)
+++..-+|.
T Consensus 106 v~tP~~~~~ 114 (125)
T PRK13290 106 VFNPPLTGR 114 (125)
T ss_pred EECCCCCCc
Confidence 998655554
No 12
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.38 E-value=1.2e-11 Score=103.38 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=77.1
Q ss_pred CCCccccceEEEEEEecCCCc------CCCccCCCC--cEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEE
Q 048761 87 FPGINTLGMSFVRADLRVGAI------NPPHFHPRA--TEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHF 158 (221)
Q Consensus 87 ~P~l~~~g~s~~rv~l~pgg~------~ppH~Hp~a--~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~ 158 (221)
.|..+..++.+....++||.. .+.|+|+.. .|+.||++|++.+.+.+.+++.....+++||+++||+|..|.
T Consensus 60 ~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~ 139 (191)
T PRK04190 60 EPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHR 139 (191)
T ss_pred cCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEE
Confidence 344555679999999999986 567999754 499999999999999876555556899999999999999999
Q ss_pred EEecCCCCEEEEEEEcCC
Q 048761 159 QMNVGDEPATIFGSFNSQ 176 (221)
Q Consensus 159 ~~N~g~~~a~~l~v~ss~ 176 (221)
..|.|++++++++++...
T Consensus 140 ~iN~G~epl~fl~v~p~~ 157 (191)
T PRK04190 140 SVNTGDEPLVFLACYPAD 157 (191)
T ss_pred eEECCCCCEEEEEEEcCC
Confidence 999999999999998854
No 13
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=99.29 E-value=1.7e-11 Score=98.35 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=74.6
Q ss_pred CCCCCccccceEEEEEEecCCCcC-CCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCC--CeEEEEe
Q 048761 85 TVFPGINTLGMSFVRADLRVGAIN-PPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG--LMHFQMN 161 (221)
Q Consensus 85 ~~~P~l~~~g~s~~rv~l~pgg~~-ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G--~~H~~~N 161 (221)
..+-||... .+....++||+.. ..|||...+|++|||+|++++.+. +. .+.|++||++-||+| ..|.++|
T Consensus 34 G~~~Gl~~f--Gvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~d---~~--e~~lrpGD~~gFpAG~~~aHhliN 106 (161)
T COG3837 34 GDALGLKRF--GVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRED---GG--ETRLRPGDSAGFPAGVGNAHHLIN 106 (161)
T ss_pred hhhcChhhc--ccceEEeCCCCccccccccccCceEEEEEcCceEEEEC---Ce--eEEecCCceeeccCCCcceeEEee
Confidence 456667654 4555688999874 789999999999999999999876 33 389999999999999 8999999
Q ss_pred cCCCCEEEEEEEcCCCCCcee
Q 048761 162 VGDEPATIFGSFNSQNPGNQK 182 (221)
Q Consensus 162 ~g~~~a~~l~v~ss~~pg~~~ 182 (221)
.++..+++|++-+...-....
T Consensus 107 ~s~~~~~yL~vG~r~~~d~i~ 127 (161)
T COG3837 107 RSDVILRYLEVGTREPDDIIT 127 (161)
T ss_pred cCCceEEEEEeccccccceee
Confidence 999999999998755433333
No 14
>PRK11171 hypothetical protein; Provisional
Probab=99.25 E-value=1.1e-10 Score=102.18 Aligned_cols=111 Identities=19% Similarity=0.191 Sum_probs=86.2
Q ss_pred cCCCCCCCCCCeEEecCCCCCCcCCCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCC-CCcEEEEEEeCcEE
Q 048761 50 CKNSSEATTDDFVFSGLKSAGNFSDTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHP-RATEIAYVVQGSVY 128 (221)
Q Consensus 50 ck~~~~vt~~df~~~~l~~~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp-~a~E~~yVl~G~~~ 128 (221)
-++.+.+++++.+++.| |+ -.+..++.+.. |.. +.++.+.+++++||+....|.|+ ...|++||++|+++
T Consensus 25 ~~~~a~~~p~~~v~~~l--p~---~~~~~~~~L~~---~~~-~~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~ 95 (266)
T PRK11171 25 TEAYAVIPPDDIVTSVL--PG---WENTRAWVLAR---PGL-GATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEIT 95 (266)
T ss_pred ecCeEEECCcCEEeecC--CC---CCCeEEEEEeC---CCC-CCcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEE
Confidence 34567778888888866 32 22334444432 222 34689999999999987767765 45899999999999
Q ss_pred EEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEc
Q 048761 129 SGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFN 174 (221)
Q Consensus 129 v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~s 174 (221)
+.+. ++ .+.|++||.++||++..|.+.|.++++++++++..
T Consensus 96 v~~~---g~--~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~~ 136 (266)
T PRK11171 96 LTLE---GK--THALSEGGYAYLPPGSDWTLRNAGAEDARFHWIRK 136 (266)
T ss_pred EEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEEEEc
Confidence 9975 55 49999999999999999999999999999998864
No 15
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.22 E-value=9.3e-11 Score=110.22 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=71.6
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSF 173 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ 173 (221)
++.+.+++++||+..+.|+|++.+|.+||++|++++.+. ++ .+.|++||+++||+|.+|.+.|.|+++++++++.
T Consensus 375 ~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~d---g~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~ 449 (468)
T TIGR01479 375 RYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIG---DE--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQ 449 (468)
T ss_pred CEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEE
Confidence 689999999999998889988889999999999999986 55 4899999999999999999999999999999998
Q ss_pred cCC
Q 048761 174 NSQ 176 (221)
Q Consensus 174 ss~ 176 (221)
..+
T Consensus 450 ~~~ 452 (468)
T TIGR01479 450 SGS 452 (468)
T ss_pred cCC
Confidence 743
No 16
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.20 E-value=1.1e-10 Score=109.83 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=70.9
Q ss_pred cceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 93 LGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 93 ~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
.++.+.+++++||+....|+|...+|++||++|++++.+. ++ .+.|++||.++||+|.+|.+.|.|++++++|++
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id---g~--~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V 457 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID---GD--IKLLGENESIYIPLGATHCLENPGKIPLDLIEV 457 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC---CE--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEE
Confidence 3688999999999987778887788999999999999986 56 499999999999999999999999999999999
Q ss_pred EcC
Q 048761 173 FNS 175 (221)
Q Consensus 173 ~ss 175 (221)
...
T Consensus 458 ~~g 460 (478)
T PRK15460 458 RSG 460 (478)
T ss_pred EcC
Confidence 764
No 17
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=99.20 E-value=1.4e-10 Score=93.65 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=71.0
Q ss_pred cceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 93 LGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 93 ~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
.++.+.|+++.||....+|.|...+|.++|++|++.+.+. ++ .+.+++||.+++|+|..|.+.|.|+.++.+|.+
T Consensus 61 ~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~~---~~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEV 135 (151)
T PF01050_consen 61 EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTLD---DE--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEV 135 (151)
T ss_pred CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEEC---CE--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEE
Confidence 4688999999999999999999999999999999999985 45 489999999999999999999999999999987
Q ss_pred Ec
Q 048761 173 FN 174 (221)
Q Consensus 173 ~s 174 (221)
-.
T Consensus 136 q~ 137 (151)
T PF01050_consen 136 QT 137 (151)
T ss_pred ec
Confidence 55
No 18
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=99.19 E-value=2e-10 Score=95.05 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=65.9
Q ss_pred cceEEEEEEecCCCcC-CCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEE
Q 048761 93 LGMSFVRADLRVGAIN-PPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFG 171 (221)
Q Consensus 93 ~g~s~~rv~l~pgg~~-ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 171 (221)
..+.+.+.+++||+.. +.|+|+ ..|++||++|++++.+. ++ .+.|++||.++||.+.+|.+.|.+++++++++
T Consensus 105 ~~~~~~~~~~~pg~~~~~~~~h~-~~E~~~Vl~G~~~~~~~---~~--~~~l~~Gd~~~~~~~~~H~~~n~~~~~~~~l~ 178 (185)
T PRK09943 105 RTLAMIFETYQPGTTTGERIKHQ-GEEIGTVLEGEIVLTIN---GQ--DYHLVAGQSYAINTGIPHSFSNTSAGICRIIS 178 (185)
T ss_pred CeeEEEEEEccCCCCcccccccC-CcEEEEEEEeEEEEEEC---CE--EEEecCCCEEEEcCCCCeeeeCCCCCCeEEEE
Confidence 3467778899999865 467786 69999999999999985 45 49999999999999999999999999999998
Q ss_pred EEc
Q 048761 172 SFN 174 (221)
Q Consensus 172 v~s 174 (221)
+..
T Consensus 179 ~~~ 181 (185)
T PRK09943 179 AHT 181 (185)
T ss_pred EeC
Confidence 865
No 19
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=9.2e-10 Score=84.65 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=72.9
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCce-EEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
++-+-.++++||+..-.|-|...+-.+||++|+....++ +++ +..+.++||+|+||+|++|.-.|.+++++..+.+
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G---~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~vIa 121 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYG---NRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSAVIA 121 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeec---cceeeeEEecCCCeEEcCCCCCCcccccCCCCeEEEEE
Confidence 678888999999999999999888899999999999987 343 4578999999999999999999999999999888
Q ss_pred EcCCCCC
Q 048761 173 FNSQNPG 179 (221)
Q Consensus 173 ~ss~~pg 179 (221)
-+..||.
T Consensus 122 RsDp~~~ 128 (142)
T COG4101 122 RSDPNPQ 128 (142)
T ss_pred ccCCCCC
Confidence 7755554
No 20
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.04 E-value=2.7e-09 Score=93.26 Aligned_cols=75 Identities=13% Similarity=0.052 Sum_probs=65.3
Q ss_pred ceEEEEEEecCCCcCCC-ccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 94 GMSFVRADLRVGAINPP-HFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 94 g~s~~rv~l~pgg~~pp-H~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
++.+.+++++||+..+. |.|. .+|.+|||+|++.+... ++ ...+++||++++|++.+|+.+|.|++++++|.-
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~~---g~--~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l~y 251 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNLD---NN--WVPVEAGDYIWMGAYCPQACYAGGRGEFRYLLY 251 (260)
T ss_pred CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEEC---CE--EEEecCCCEEEECCCCCEEEEecCCCcEEEEEE
Confidence 57888899999999985 5565 68899999999999875 56 499999999999999999999999999999854
Q ss_pred Ec
Q 048761 173 FN 174 (221)
Q Consensus 173 ~s 174 (221)
-+
T Consensus 252 kd 253 (260)
T TIGR03214 252 KD 253 (260)
T ss_pred cc
Confidence 43
No 21
>PRK11171 hypothetical protein; Provisional
Probab=99.04 E-value=1.9e-09 Score=94.45 Aligned_cols=75 Identities=15% Similarity=0.055 Sum_probs=66.7
Q ss_pred ceEEEEEEecCCCcCCCc-cCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 94 GMSFVRADLRVGAINPPH-FHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH-~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
.+.+.+++++||+..+.| .|. .+|.+||++|++++.+. ++ .+.|++||++.|+++.+|++.|.|+++++++..
T Consensus 183 ~~~~~~~~l~PG~~~~~~~~~~-~ee~i~Vl~G~~~~~~~---~~--~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~~ 256 (266)
T PRK11171 183 DMHVNIVTFEPGASIPFVETHV-MEHGLYVLEGKGVYRLN---ND--WVEVEAGDFIWMRAYCPQACYAGGPGPFRYLLY 256 (266)
T ss_pred CcEEEEEEECCCCEEccCcCCC-ceEEEEEEeCEEEEEEC---CE--EEEeCCCCEEEECCCCCEEEECCCCCcEEEEEE
Confidence 478999999999998874 564 78999999999999875 55 499999999999999999999999999999976
Q ss_pred Ec
Q 048761 173 FN 174 (221)
Q Consensus 173 ~s 174 (221)
-+
T Consensus 257 k~ 258 (266)
T PRK11171 257 KD 258 (266)
T ss_pred cc
Confidence 65
No 22
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.03 E-value=2.9e-09 Score=93.10 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=66.8
Q ss_pred cceEEEEEEecCCCcC-CCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEE
Q 048761 93 LGMSFVRADLRVGAIN-PPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFG 171 (221)
Q Consensus 93 ~g~s~~rv~l~pgg~~-ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 171 (221)
..+.+..++++||+.. .+|.|+..+|++||++|++++.+. ++ .+.|++||.+++|+|..|.+.|.+++++++++
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~~---g~--~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~ 130 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTAE---GE--THELREGGYAYLPPGSKWTLANAQAEDARFFL 130 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEEC---CE--EEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence 3588999999998765 456677568999999999999875 55 48999999999999999999999999999998
Q ss_pred EEc
Q 048761 172 SFN 174 (221)
Q Consensus 172 v~s 174 (221)
+-.
T Consensus 131 v~k 133 (260)
T TIGR03214 131 YKK 133 (260)
T ss_pred EEe
Confidence 764
No 23
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=98.95 E-value=8e-09 Score=82.40 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=55.6
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCC----CceEEEEecCCcEEEEcCCCeEEEEecC-CCCEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS----SRVFARVIKQGEVMVFPRGLMHFQMNVG-DEPAT 168 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~----~k~~~~~L~~GDv~~~P~G~~H~~~N~g-~~~a~ 168 (221)
.+.+..-++.||...|+|.|. .+|+++|++|+++..+..+. |+...+.+.+++.|.||.+..|..+|.+ .+++.
T Consensus 43 evEVwlQTfAPG~~TPiHRHs-CEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq 121 (167)
T PF02041_consen 43 EVEVWLQTFAPGSATPIHRHS-CEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ 121 (167)
T ss_dssp SEEEEEEEE-TT-B--EEEES-S-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred eeeEEeeeecCCCCCCCcccc-ccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence 478999999999999999997 89999999999999988654 5666799999999999999999999999 58999
Q ss_pred EEEEEcC
Q 048761 169 IFGSFNS 175 (221)
Q Consensus 169 ~l~v~ss 175 (221)
++++++.
T Consensus 122 vlViiSr 128 (167)
T PF02041_consen 122 VLVIISR 128 (167)
T ss_dssp EEEEEES
T ss_pred EEEEecC
Confidence 9988774
No 24
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.74 E-value=1.7e-07 Score=77.84 Aligned_cols=84 Identities=24% Similarity=0.355 Sum_probs=58.4
Q ss_pred ccceEEEEEEecCCCc------CCCccCCC------CcEEEEEEeCcEEEEEEeCCC----ceEEEEecCCcEEEEcCCC
Q 048761 92 TLGMSFVRADLRVGAI------NPPHFHPR------ATEIAYVVQGSVYSGFVDSSS----RVFARVIKQGEVMVFPRGL 155 (221)
Q Consensus 92 ~~g~s~~rv~l~pgg~------~ppH~Hp~------a~E~~yVl~G~~~v~~~~~~~----k~~~~~L~~GDv~~~P~G~ 155 (221)
..++..-...+.||.+ ..-|+|+. ..|+.+|++|++.+-+.+.++ +.+...+++||+++||++.
T Consensus 47 ~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~y 126 (182)
T PF06560_consen 47 KRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGY 126 (182)
T ss_dssp ---EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-
T ss_pred eeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCc
Confidence 3457777778888854 35699997 889999999999999998877 6778999999999999999
Q ss_pred eEEEEecCCCCEEEEEEEcC
Q 048761 156 MHFQMNVGDEPATIFGSFNS 175 (221)
Q Consensus 156 ~H~~~N~g~~~a~~l~v~ss 175 (221)
.|...|+|++++++.+.+.+
T Consensus 127 aH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 127 AHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp EEEEEE-SSS-EEEEEEEET
T ss_pred eEEEEECCCCcEEEEEEEec
Confidence 99999999999999988875
No 25
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.70 E-value=5.2e-08 Score=80.27 Aligned_cols=66 Identities=18% Similarity=0.285 Sum_probs=53.8
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 103 RVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 103 ~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
.||.....|+|+ .+|++|+++|++.+.+.+. |+.....|++||++++|+|++|..+.. +..+.+.+
T Consensus 42 Gpn~r~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~fllP~gvpHsP~r~--~~tv~Lvi 107 (177)
T PRK13264 42 GPNARTDFHYDP-GEEFFYQLEGDMYLKVQED-GKRRDVPIREGEMFLLPPHVPHSPQRE--AGSIGLVI 107 (177)
T ss_pred cCCcccccccCC-CceEEEEECCeEEEEEEcC-CceeeEEECCCCEEEeCCCCCcCCccC--CCeEEEEE
Confidence 566778899998 7999999999999999863 544469999999999999999998763 34444444
No 26
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=98.67 E-value=1.5e-07 Score=76.44 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=50.4
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 103 RVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 103 ~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
.||.....|.|+ .+|++|+++|++.+.+.+. |+.....|++||++++|+|++|.....++
T Consensus 36 Gpn~R~d~H~~~-tdE~FyqleG~~~l~v~d~-g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDP-GEEFFYQLKGEMYLKVTEE-GKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCC-CceEEEEEcceEEEEEEcC-CcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 556667789998 7999999999999998864 44446999999999999999999877543
No 27
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=98.50 E-value=6.2e-07 Score=68.07 Aligned_cols=65 Identities=25% Similarity=0.359 Sum_probs=47.0
Q ss_pred CCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEc
Q 048761 104 VGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFN 174 (221)
Q Consensus 104 pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~s 174 (221)
++...++|+|+ .-|+.||++|++++.+. ++ .+.+++||++++|+|.+|.....++++...+.+.=
T Consensus 12 ~~~~~~~h~h~-~~~i~~v~~G~~~~~~~---~~--~~~l~~g~~~li~p~~~H~~~~~~~~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHD-FYEIIYVLSGEGTLHID---GQ--EYPLKPGDLFLIPPGQPHSYYPDSNEPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEET---TE--EEEE-TT-EEEE-TTS-EEEEE-TTSEEEEEEEEE
T ss_pred CCCccCCEECC-CEEEEEEeCCEEEEEEC---CE--EEEEECCEEEEecCCccEEEecCCCCCEEEEEEEE
Confidence 34456889997 79999999999999875 45 49999999999999999999988776766665554
No 28
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=98.46 E-value=4.5e-07 Score=66.75 Aligned_cols=81 Identities=27% Similarity=0.383 Sum_probs=58.4
Q ss_pred CCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCC
Q 048761 75 TGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154 (221)
Q Consensus 75 ~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G 154 (221)
.|.++..+.. .+. ..|..+..+.++||+..|.|.|+ +.|.+|||+|++..+ . ..+.+||.+..|+|
T Consensus 8 ~Gv~~~~L~~--~~~--~~g~~~~L~r~~pG~~~p~H~H~-g~ee~~VLeG~~~d~------~---~~~~~G~~~~~p~g 73 (91)
T PF12973_consen 8 PGVSVKPLHR--DEG--ETGERVSLLRLEPGASLPRHRHP-GGEEILVLEGELSDG------D---GRYGAGDWLRLPPG 73 (91)
T ss_dssp TTEEEEEEEE--CSS--STTEEEEEEEE-TTEEEEEEEES-S-EEEEEEECEEEET------T---CEEETTEEEEE-TT
T ss_pred CCEEEEEecc--CCC--cccCEEEEEEECCCCCcCccCCC-CcEEEEEEEEEEEEC------C---ccCCCCeEEEeCCC
Confidence 4555555552 221 13578889999999999999998 688889999999732 2 34699999999999
Q ss_pred CeEEEEecCCCCEEEEE
Q 048761 155 LMHFQMNVGDEPATIFG 171 (221)
Q Consensus 155 ~~H~~~N~g~~~a~~l~ 171 (221)
..|.... ++.+.++.
T Consensus 74 ~~h~~~s--~~gc~~~v 88 (91)
T PF12973_consen 74 SSHTPRS--DEGCLILV 88 (91)
T ss_dssp EEEEEEE--SSCEEEEE
T ss_pred CccccCc--CCCEEEEE
Confidence 9999884 55566654
No 29
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=98.43 E-value=2e-06 Score=63.07 Aligned_cols=73 Identities=25% Similarity=0.309 Sum_probs=54.9
Q ss_pred ceEEEEEEecCCCcCC-CccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 94 GMSFVRADLRVGAINP-PHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 94 g~s~~rv~l~pgg~~p-pH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
.++...++++||+.-+ -+++. ..-++||++|.+++.+. +. ...+.+|+++++|+|-.-.+.|.++++|+++.+
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~-~~~vF~V~~G~v~Vti~---~~--~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF~ 84 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRD-NTMVFYVIKGKVEVTIH---ET--SFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFFV 84 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--S-EEEEEEEEESEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEE-SSS-EEEEEE
T ss_pred CceeEEEEeCCCCccCCcccCC-cEEEEEEEeCEEEEEEc---Cc--EEEEeCCCEEEECCCCEEEEEECCCCcEEEEEe
Confidence 4678899999999864 46664 68899999999999995 23 489999999999999999999999999998754
No 30
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.43 E-value=2.1e-06 Score=69.81 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=52.7
Q ss_pred CCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcC
Q 048761 108 NPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNS 175 (221)
Q Consensus 108 ~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss 175 (221)
...|+|. .+|+-|+++|++.+.+...+++..+..+++||.+++|+|+.||+.-..+....++=.|..
T Consensus 85 ~~EH~H~-deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i~aiRlF~~ 151 (157)
T PF03079_consen 85 FEEHTHE-DEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYIKAIRLFKD 151 (157)
T ss_dssp CS-EEES-S-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSEEEEEEESS
T ss_pred heeEecC-hheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcEEEEEeecC
Confidence 4689998 599999999999999998777766689999999999999999998766777888777764
No 31
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=98.39 E-value=1.4e-06 Score=74.29 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=62.8
Q ss_pred eEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEc
Q 048761 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFN 174 (221)
Q Consensus 95 ~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~s 174 (221)
..+..+.++||+.+|.|+|. +.|+.+||+|++. ++ . ..+.+||++..|.|..|...+.++++++.+++.+
T Consensus 127 ~~v~Ll~i~pG~~~p~H~H~-G~E~tlVLeG~f~----de--~---g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~d 196 (215)
T TIGR02451 127 ARVRLLYIEAGQSIPQHTHK-GFELTLVLHGAFS----DE--T---GVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLD 196 (215)
T ss_pred cEEEEEEECCCCccCCCcCC-CcEEEEEEEEEEE----cC--C---CccCCCeEEECCCCCCcCcccCCCCCeEEEEEec
Confidence 46778899999999999996 7999999999963 22 2 4689999999999999999999999999999988
Q ss_pred CC
Q 048761 175 SQ 176 (221)
Q Consensus 175 s~ 176 (221)
..
T Consensus 197 ap 198 (215)
T TIGR02451 197 AP 198 (215)
T ss_pred CC
Confidence 64
No 32
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=98.39 E-value=8.6e-07 Score=77.04 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=58.5
Q ss_pred CCCCCCeEEecCCCCCCcCCCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeC
Q 048761 55 EATTDDFVFSGLKSAGNFSDTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDS 134 (221)
Q Consensus 55 ~vt~~df~~~~l~~~~~~~~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~ 134 (221)
.|.++|..|.-+.-..+ ..+.....+. ..|. ..|.+..|+.+++|...|||+|. +++-+||++|++..+
T Consensus 2 ~v~~~d~~w~~~~p~~~--~~~~~~~~L~--gd~~--~~g~~~~~vkf~~g~~~pph~H~-~~~~~~Vi~G~~~~~---- 70 (251)
T PF14499_consen 2 VVHADDVKWGPLNPARG--DKGPGAAVLW--GDPT--KDGPSGMRVKFPAGFSSPPHIHN-ADYRGTVISGELHNG---- 70 (251)
T ss_dssp GGGS--EEEE--TTS-T--TS--EEEEEE--EE----TTS-EEEEEEE-TT-EE--BEES-S-EEEEEEESEEEET----
T ss_pred ccchhhccccccCCCCC--CCCcceeeee--cCcc--cCCcceEEEEcCCCccCCCccee-eeEEEEEEEeEEEcC----
Confidence 36788999984322111 2333433333 3332 24789999999999999999997 899999999987653
Q ss_pred CCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEE
Q 048761 135 SSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIF 170 (221)
Q Consensus 135 ~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 170 (221)
+.+....-|.+|..+..|+|..|+....+++.+.++
T Consensus 71 ~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~ 106 (251)
T PF14499_consen 71 DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFI 106 (251)
T ss_dssp TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEE
T ss_pred CCcccceecCCCceEeccCCCceeeeccCccEEEEE
Confidence 223334679999999999999999877776655554
No 33
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=98.35 E-value=4.9e-06 Score=71.18 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=52.0
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSF 173 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ 173 (221)
.|+...+.++. ...+ ||....|+.||++|++++.+. |+ .+.+++||+++||+|..|.+.+.+ .++++.+.
T Consensus 156 ~m~aGf~~~~~-~sf~--wtl~~dEi~YVLEGe~~l~Id---G~--t~~l~pGDvlfIPkGs~~hf~tp~--~aRflyV~ 225 (233)
T PRK15457 156 SMAAGFMQWEN-AFFP--WTLNYDEIDMVLEGELHVRHE---GE--TMIAKAGDVMFIPKGSSIEFGTPS--SVRFLYVA 225 (233)
T ss_pred ceeeEEEEEec-Cccc--eeccceEEEEEEEeEEEEEEC---CE--EEEeCCCcEEEECCCCeEEecCCC--CeeEEEEE
Confidence 45555566654 3334 555679999999999999985 56 499999999999999995554443 56666554
Q ss_pred c
Q 048761 174 N 174 (221)
Q Consensus 174 s 174 (221)
.
T Consensus 226 ~ 226 (233)
T PRK15457 226 W 226 (233)
T ss_pred e
Confidence 3
No 34
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=98.25 E-value=4.6e-06 Score=74.14 Aligned_cols=60 Identities=18% Similarity=0.160 Sum_probs=50.0
Q ss_pred EEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCC
Q 048761 100 ADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDE 165 (221)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 165 (221)
..-+|..+.++|||. .-|+.|+++|++.+.+. |+ .+.+++||++++++|.+|.....++.
T Consensus 31 ~~~~~~~m~~~HwH~-e~Ei~yv~~G~~~~~i~---g~--~~~l~~Gd~ili~s~~~H~~~~~~~~ 90 (302)
T PRK10371 31 EFRPPHIMPTSHWHG-QVEVNVPFDGDVEYLIN---NE--KVQINQGHITLFWACTPHQLTDPGNC 90 (302)
T ss_pred EeeCCCCCCCCCccc-cEEEEEecCCcEEEEEC---CE--EEEEcCCcEEEEecCCcccccccCCC
Confidence 355667788999997 69999999999998875 56 48999999999999999987655443
No 35
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.21 E-value=1.3e-05 Score=65.49 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=62.0
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCCCCce
Q 048761 109 PPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQ 181 (221)
Q Consensus 109 ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg~~ 181 (221)
.-|.|. ..|+-|++.|.+.+.+...+|+.+...+.+||.+.+|+|.-||+--..+-..+++=.|. ..||-+
T Consensus 89 ~EH~H~-d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f~AvRlF~-~~~gWV 159 (181)
T COG1791 89 QEHLHT-DDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNFKAVRLFT-EPEGWV 159 (181)
T ss_pred HHhccC-CceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcEEEEEEee-CCCCce
Confidence 469997 69999999999999999988899999999999999999999999877777788877777 355655
No 36
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=98.14 E-value=1.4e-05 Score=72.33 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=64.4
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSF 173 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ 173 (221)
.+....-.+.||...++|.|. +.-+.+|++|++....++ |+ ...+++||+|+.|.+..|...|.|++++..+...
T Consensus 80 tl~a~~q~l~pGe~~~~HRht-~sAl~~vveG~G~~t~V~--g~--~~~~~~gD~~~tP~w~wH~H~n~~d~~~~wld~l 154 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRHT-QSALRFIVEGKGAFTAVD--GE--RTTMHPGDFIITPSWTWHDHGNPGDEPMIWLDGL 154 (335)
T ss_pred hHHhhhEEeCCCCCCCccccc-cceEEEEEEcCceEEEEC--CE--EEeeeCCCEEEeCCCeeEecccCCCCcEEEEecC
Confidence 455666789999999999997 789999999999766653 55 4999999999999999999999999997776565
Q ss_pred c
Q 048761 174 N 174 (221)
Q Consensus 174 s 174 (221)
+
T Consensus 155 D 155 (335)
T TIGR02272 155 D 155 (335)
T ss_pred C
Confidence 5
No 37
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=98.12 E-value=4e-05 Score=59.68 Aligned_cols=82 Identities=21% Similarity=0.326 Sum_probs=71.4
Q ss_pred ccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEE
Q 048761 92 TLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFG 171 (221)
Q Consensus 92 ~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 171 (221)
+.|+|+-.-.+.+|.....|+-. .-|.+|+++|++++.-.++ |+. +.+++|.++...+.-.|+++... ++++++
T Consensus 32 gmGFS~h~T~i~aGtet~~~Ykn-HlEAvyci~G~Gev~~~~~-G~~--~~i~pGt~YaLd~hD~H~lra~~--dm~~vC 105 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHYKN-HLEAVYCIEGEGEVEDLDT-GEV--HPIKPGTMYALDKHDRHYLRAKT--DMRLVC 105 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEecC-ceEEEEEEeceEEEEEccC-CcE--EEcCCCeEEecCCCccEEEEecC--CEEEEE
Confidence 56899999999999999999865 5899999999999988753 664 99999999999999999998754 899999
Q ss_pred EEcCCCCC
Q 048761 172 SFNSQNPG 179 (221)
Q Consensus 172 v~ss~~pg 179 (221)
+|+..--|
T Consensus 106 VFnPpltG 113 (126)
T PF06339_consen 106 VFNPPLTG 113 (126)
T ss_pred EcCCCCcC
Confidence 99965333
No 38
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=98.06 E-value=2.9e-05 Score=67.50 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=44.2
Q ss_pred CCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEec
Q 048761 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNV 162 (221)
Q Consensus 105 gg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~ 162 (221)
+...++|||. ..|++||++|++++.+. ++ .+.+++||++++|+|..|.....
T Consensus 33 ~~~~~~H~H~-~~ei~~v~~G~~~~~i~---~~--~~~l~~g~l~~i~p~~~H~~~~~ 84 (278)
T PRK10296 33 ESVSGLHQHD-YYEFTLVLTGRYYQEIN---GK--RVLLERGDFVFIPLGSHHQSFYE 84 (278)
T ss_pred hcCCCCcccc-cEEEEEEEeceEEEEEC---CE--EEEECCCcEEEeCCCCccceeee
Confidence 3456899996 79999999999998875 56 48999999999999999976543
No 39
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=98.02 E-value=8.7e-05 Score=58.49 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=53.4
Q ss_pred CeEEEEecCCC-CCCccccceEEEEE-EecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCc-EEEEc
Q 048761 76 GLATIPVNPTV-FPGINTLGMSFVRA-DLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGE-VMVFP 152 (221)
Q Consensus 76 g~~v~~~~~~~-~P~l~~~g~s~~rv-~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GD-v~~~P 152 (221)
.|.++.+.... .| ..- -.+..+ ..++|....+|.|....|+++|++|++.+.+.+..++ ..+.|...+ .+.+|
T Consensus 15 RG~L~~~e~~~~ip-f~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~-~~~~L~~~~~~L~Ip 90 (131)
T PF05523_consen 15 RGSLSVIERFDDIP-FEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREE-EEFILDEPNKGLYIP 90 (131)
T ss_dssp TEEEEEEETTTSSS-S-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-E-EEEEE--TTEEEEE-
T ss_pred CCcEEEEeccCCCC-CCc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCc-EEEEECCCCeEEEEC
Confidence 55666666543 33 211 122233 2444445789999999999999999999998864433 467777665 89999
Q ss_pred CCCeEEEEecCCCCEEEEEEEcCC
Q 048761 153 RGLMHFQMNVGDEPATIFGSFNSQ 176 (221)
Q Consensus 153 ~G~~H~~~N~g~~~a~~l~v~ss~ 176 (221)
+|..|.+.|.++. +++++ +++.
T Consensus 91 pg~w~~~~~~s~~-svlLv-~as~ 112 (131)
T PF05523_consen 91 PGVWHGIKNFSED-SVLLV-LASE 112 (131)
T ss_dssp TT-EEEEE---TT--EEEE-EESS
T ss_pred CchhhHhhccCCC-cEEEE-EcCC
Confidence 9999999999877 66664 4543
No 40
>PRK13500 transcriptional activator RhaR; Provisional
Probab=98.02 E-value=2.4e-05 Score=69.67 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=46.7
Q ss_pred CCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 104 VGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 104 pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
|....++|||+ ..|++||++|++...+. ++ .+.+++||++++++|.+|.+....+
T Consensus 57 ~~~~~~~H~H~-~~el~~v~~G~g~~~v~---~~--~~~l~~Gdl~~I~~~~~H~~~~~~~ 111 (312)
T PRK13500 57 PQDVFAEHTHD-FCELVIVWRGNGLHVLN---DR--PYRITRGDLFYIHADDKHSYASVND 111 (312)
T ss_pred CCCCCCccccc-eEEEEEEEcCeEEEEEC---CE--EEeecCCeEEEECCCCeecccccCC
Confidence 44456899997 79999999999998875 45 4999999999999999999876544
No 41
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=97.99 E-value=2e-05 Score=68.57 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=48.8
Q ss_pred CCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEE
Q 048761 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIF 170 (221)
Q Consensus 105 gg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 170 (221)
+...++|||.+.-|++|+++|++.+.+. ++ .+.+++||++++|+|.+|.+...++....++
T Consensus 33 ~~~~~~H~H~~~~~l~~~~~G~~~~~~~---~~--~~~l~~g~~~ii~~~~~H~~~~~~~~~~~~i 93 (287)
T TIGR02297 33 GRNMPVHFHDRYYQLHYLTEGSIALQLD---EH--EYSEYAPCFFLTPPSVPHGFVTDLDADGHVL 93 (287)
T ss_pred CCCCCCcccccceeEEEEeeCceEEEEC---CE--EEEecCCeEEEeCCCCccccccCCCcceEEE
Confidence 3457999996458999999999998875 45 4899999999999999999876554443333
No 42
>PRK13501 transcriptional activator RhaR; Provisional
Probab=97.98 E-value=2.6e-05 Score=68.31 Aligned_cols=56 Identities=21% Similarity=0.127 Sum_probs=46.9
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 103 RVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 103 ~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
.+....++|||. ..|++||++|++++.+. ++ .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~H~-~~ei~~i~~G~~~~~i~---~~--~~~l~~g~~~~I~p~~~H~~~~~~~ 81 (290)
T PRK13501 26 YPQETFVEHTHQ-FCEIVIVWRGNGLHVLN---DH--PYRITCGDVFYIQAADHHSYESVHD 81 (290)
T ss_pred CCCCCCcccccc-ceeEEEEecCceEEEEC---Ce--eeeecCCeEEEEcCCCcccccccCC
Confidence 344456799997 79999999999999875 55 4999999999999999999875443
No 43
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.98 E-value=1.4e-05 Score=63.18 Aligned_cols=68 Identities=19% Similarity=0.361 Sum_probs=54.6
Q ss_pred CCCcC-CCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEc
Q 048761 104 VGAIN-PPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFN 174 (221)
Q Consensus 104 pgg~~-ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~s 174 (221)
.|+++ --|+|.++.|++.|++|+..+.++..+|. +..+++||++++|+|+-|.- +....+..++..+.
T Consensus 51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~--el~v~~GDvlliPAGvGH~r-l~sS~DF~VvGaYp 119 (163)
T COG4297 51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQ--ELEVGEGDVLLIPAGVGHCR-LHSSADFQVVGAYP 119 (163)
T ss_pred cccccccccccCCcceEEEEecceeEEEecCCCCc--eeeecCCCEEEEecCccccc-ccCCCCeEEEcccC
Confidence 34554 46899999999999999999999988877 48999999999999999964 44445555555554
No 44
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=97.86 E-value=0.00012 Score=62.18 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=64.5
Q ss_pred eEEEEEEecCCC-cCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEE
Q 048761 95 MSFVRADLRVGA-INPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSF 173 (221)
Q Consensus 95 ~s~~rv~l~pgg-~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ 173 (221)
++--.+++.|+| .-.+-.-++++-++||++|++.+.+. |+ ++.|++|+..++|+|..|.++|...+++++..+-
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~---G~--th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAE---GK--THALREGGYAYLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEc---Ce--EEEeccCCeEEeCCCCcceEeeccCCceEEEEEe
Confidence 455568898877 45677778889999999999999987 67 4999999999999999999999999999988765
Q ss_pred c
Q 048761 174 N 174 (221)
Q Consensus 174 s 174 (221)
-
T Consensus 136 k 136 (264)
T COG3257 136 K 136 (264)
T ss_pred e
Confidence 4
No 45
>PRK13502 transcriptional activator RhaR; Provisional
Probab=97.80 E-value=9.3e-05 Score=64.39 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=46.7
Q ss_pred cCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 103 RVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 103 ~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
.|+...++|||. .-|++||++|++++.+. ++ .+.+++||++++|+|.+|.+...++
T Consensus 26 ~~~~~~~~H~h~-~~~l~~v~~G~~~~~i~---~~--~~~l~~g~l~li~~~~~H~~~~~~~ 81 (282)
T PRK13502 26 YPQDVFAEHTHE-FCELVMVWRGNGLHVLN---ER--PYRITRGDLFYIRAEDKHSYTSVND 81 (282)
T ss_pred CCCCCCCccccc-eEEEEEEecCcEEEEEC---CE--EEeecCCcEEEECCCCcccccccCC
Confidence 444457899997 79999999999998875 55 4999999999999999999865443
No 46
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.78 E-value=4.7e-05 Score=67.41 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=73.2
Q ss_pred EEecCCCCCCccccc-----eEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCC
Q 048761 80 IPVNPTVFPGINTLG-----MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRG 154 (221)
Q Consensus 80 ~~~~~~~~P~l~~~g-----~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G 154 (221)
+.+-.-..|+|++.. +-...--+.||-..|.|.|. .+-+-+|+||++-.+.++ |+ ...+++||.+.-|++
T Consensus 72 RRvi~L~NP~l~g~ssiT~TLyAglQlilPGEvApsHrHs-qsAlRFvveG~Ga~T~Vd--Ge--r~~M~~GDfilTP~w 146 (351)
T COG3435 72 RRVIYLENPGLRGRSSITPTLYAGLQLILPGEVAPSHRHN-QSALRFVVEGKGAYTVVD--GE--RTPMEAGDFILTPAW 146 (351)
T ss_pred eEEEEecCCCCCCcccccHHHHhhhheecCcccCCccccc-ccceEEEEeccceeEeec--Cc--eeeccCCCEEEccCc
Confidence 334445678887653 12233457899999999997 789999999999988885 44 389999999999999
Q ss_pred CeEEEEecCCCCEEEEEEEcC
Q 048761 155 LMHFQMNVGDEPATIFGSFNS 175 (221)
Q Consensus 155 ~~H~~~N~g~~~a~~l~v~ss 175 (221)
..|..-|.|.+|++.+-.++.
T Consensus 147 ~wHdHgn~g~eP~iWlDgLDi 167 (351)
T COG3435 147 TWHDHGNEGTEPCIWLDGLDI 167 (351)
T ss_pred eeccCCCCCCCceEEEcccch
Confidence 999999999999998877663
No 47
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.76 E-value=7.1e-05 Score=53.18 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=43.5
Q ss_pred eEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEE
Q 048761 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 95 ~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~ 160 (221)
++....+..||.. +.++. .+|++|||+|++++... +|+ .+++++||++++|+|..-.+.
T Consensus 7 ~~~g~w~~~pg~~-~~~~~--~~E~~~vleG~v~it~~--~G~--~~~~~aGD~~~~p~G~~~~w~ 65 (74)
T PF05899_consen 7 FSAGVWECTPGKF-PWPYP--EDEFFYVLEGEVTITDE--DGE--TVTFKAGDAFFLPKGWTGTWE 65 (74)
T ss_dssp EEEEEEEEECEEE-EEEES--SEEEEEEEEEEEEEEET--TTE--EEEEETTEEEEE-TTEEEEEE
T ss_pred EEEEEEEECCcee-EeeCC--CCEEEEEEEeEEEEEEC--CCC--EEEEcCCcEEEECCCCEEEEE
Confidence 5566667777653 34444 49999999999998764 366 499999999999999865543
No 48
>PRK13503 transcriptional activator RhaS; Provisional
Probab=97.75 E-value=6.7e-05 Score=64.89 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=45.8
Q ss_pred CCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecC
Q 048761 104 VGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVG 163 (221)
Q Consensus 104 pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g 163 (221)
+....++|||. ..|++||++|++++.+. ++ .+.+++||++++|+|..|.+.+..
T Consensus 24 ~~~~~~~H~H~-~~ei~~v~~G~~~~~i~---~~--~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 24 PQAAFPEHHHD-FHEIVIVEHGTGIHVFN---GQ--PYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred ccccccccccC-ceeEEEEecCceeeEec---CC--cccccCCcEEEECCCccchhhhcc
Confidence 44557899996 79999999999998886 44 389999999999999999876553
No 49
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.69 E-value=0.00011 Score=59.80 Aligned_cols=58 Identities=22% Similarity=0.455 Sum_probs=51.4
Q ss_pred CCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCC
Q 048761 108 NPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEP 166 (221)
Q Consensus 108 ~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 166 (221)
...|.|. -+|+-||++|++++-+.+.+++..+.-+++||.+++|+|+-|.+.-..+.-
T Consensus 86 fEEhlh~-deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~n~ 143 (179)
T KOG2107|consen 86 FEEHLHE-DEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPSNY 143 (179)
T ss_pred HHHhcCc-hhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCchHH
Confidence 4789998 499999999999999998888888999999999999999999997655443
No 50
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=97.67 E-value=0.0005 Score=55.19 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=48.6
Q ss_pred EEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCCCC
Q 048761 100 ADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPG 179 (221)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg 179 (221)
+.=.|+...-.|..+ .+|++|-++|...+.+.+. |+.....+++||++..|++++|+-+-.. ..+.+++-....+|
T Consensus 38 vVGGPN~R~DyHine-~eE~FyQ~kG~m~Lkv~e~-g~~kdi~I~EGe~fLLP~~vpHsP~R~~--~tiGLViEr~R~~~ 113 (151)
T PF06052_consen 38 VVGGPNQRTDYHINE-TEEFFYQLKGDMCLKVVED-GKFKDIPIREGEMFLLPANVPHSPQRPA--DTIGLVIERKRPEG 113 (151)
T ss_dssp EEESSB--SSEEE-S-S-EEEEEEES-EEEEEEET-TEEEEEEE-TTEEEEE-TT--EEEEE-T--T-EEEEEEE---TT
T ss_pred EEcCCCCCCccccCC-cceEEEEEeCcEEEEEEeC-CceEEEEeCCCcEEecCCCCCCCCcCCC--CcEEEEEEeccCCC
Confidence 344566677789998 7999999999999999975 6767899999999999999999977654 34444444333333
Q ss_pred c
Q 048761 180 N 180 (221)
Q Consensus 180 ~ 180 (221)
.
T Consensus 114 ~ 114 (151)
T PF06052_consen 114 E 114 (151)
T ss_dssp S
T ss_pred C
Confidence 3
No 51
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.44 E-value=0.00058 Score=61.90 Aligned_cols=88 Identities=19% Similarity=0.106 Sum_probs=62.9
Q ss_pred CCeEEEEecCCCCC-CccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcC
Q 048761 75 TGLATIPVNPTVFP-GINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPR 153 (221)
Q Consensus 75 ~g~~v~~~~~~~~P-~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~ 153 (221)
.|-.+.-++...=+ ...+++..+ ..+++|....+|.|. .+.+++|++|+++..++ ++ ....++||+|++|.
T Consensus 231 ~g~~l~y~NP~TG~~~~pti~~~~--q~L~~G~~t~~~r~T-~s~Vf~VieG~G~s~ig---~~--~~~W~~gD~f~vPs 302 (335)
T TIGR02272 231 HGLKLRYVNPATGGYPMPTIGAFI--QLLPKGFRTATYRST-DATVFCVVEGRGQVRIG---DA--VFRFSPKDVFVVPS 302 (335)
T ss_pred ceEEEEEeCCCCCCCcchhHHHHH--hccCCCCCCCCcccc-ccEEEEEEeCeEEEEEC---CE--EEEecCCCEEEECC
Confidence 34455555543333 233444443 467888889999996 68999999999999986 45 48999999999999
Q ss_pred CCeEEEEecCCCCEEEEEE
Q 048761 154 GLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 154 G~~H~~~N~g~~~a~~l~v 172 (221)
-..|...|. ++++++.+
T Consensus 303 W~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 303 WHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred CCcEecccC--CCeEEEEe
Confidence 988877664 45655443
No 52
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=97.40 E-value=0.00034 Score=56.53 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=45.9
Q ss_pred eEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEc
Q 048761 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFN 174 (221)
Q Consensus 95 ~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~s 174 (221)
++...++++.. +.-|.-.-+|+.||++|++++... |+ .+..++||+++||+|.--.+... ..++++.+..
T Consensus 77 l~~Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~~~---G~--~~~A~~GDvi~iPkGs~I~fst~--~~a~~~Yv~y 146 (152)
T PF06249_consen 77 LSAGFMELEKT---SFPWTLTYDEIKYVLEGTLEISID---GQ--TVTAKPGDVIFIPKGSTITFSTP--DYARFFYVTY 146 (152)
T ss_dssp SEEEEEEEEEE---EEEEE-SSEEEEEEEEEEEEEEET---TE--EEEEETT-EEEE-TT-EEEEEEE--EEEEEEEEEE
T ss_pred eeeEEEEEeCC---CccEEeecceEEEEEEeEEEEEEC---CE--EEEEcCCcEEEECCCCEEEEecC--CCEEEEEEEC
Confidence 45555666653 345666679999999999988743 66 49999999999999976555433 3455554433
No 53
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.27 E-value=0.0026 Score=51.24 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=50.5
Q ss_pred eEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEE
Q 048761 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSF 173 (221)
Q Consensus 95 ~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ 173 (221)
+++...++++ ..+|+-- +-+|+-||+||++.+... |+ ...-++||++++|+|.---+.-.|. ++++.+-
T Consensus 100 l~aG~m~~~~-~tf~wtl--~yDe~d~VlEGrL~V~~~---g~--tv~a~aGDvifiPKgssIefst~ge--a~flyvt 168 (176)
T COG4766 100 LGAGLMEMKN-TTFPWTL--NYDEIDYVLEGRLHVRID---GR--TVIAGAGDVIFIPKGSSIEFSTTGE--AKFLYVT 168 (176)
T ss_pred cccceeeecc-ccCccee--cccceeEEEeeeEEEEEc---CC--eEecCCCcEEEecCCCeEEEeccce--EEEEEEE
Confidence 5555667776 5555544 368999999999999876 55 3789999999999997666655544 6665543
No 54
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=97.13 E-value=0.0086 Score=49.37 Aligned_cols=82 Identities=18% Similarity=0.162 Sum_probs=57.7
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCc--------eEEEEecCCcEEEEcCCCeEEEEecC-C
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSR--------VFARVIKQGEVMVFPRGLMHFQMNVG-D 164 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k--------~~~~~L~~GDv~~~P~G~~H~~~N~g-~ 164 (221)
.+++..+...||...+.|=|.++.=++.|++|+++-......+. .....+..|..++++++.+|.+.|.+ +
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~ 153 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGD 153 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SS
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCC
Confidence 57788899999999999999866668889999988765542221 12345778888899999999999876 8
Q ss_pred CCEEEEEEEcC
Q 048761 165 EPATIFGSFNS 175 (221)
Q Consensus 165 ~~a~~l~v~ss 175 (221)
++++-|=+++.
T Consensus 154 ~~avSLHvYsp 164 (175)
T PF05995_consen 154 EPAVSLHVYSP 164 (175)
T ss_dssp S-EEEEEEEES
T ss_pred CCEEEEEEcCC
Confidence 99988888875
No 55
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=96.98 E-value=0.0069 Score=50.03 Aligned_cols=67 Identities=19% Similarity=0.380 Sum_probs=55.1
Q ss_pred CCCcCCCccCCCC-cEEEEEEeCcEEEEEEeCC------CceEEEEecCC--cEEEEcCCCeEEEEecCCCCEEEE
Q 048761 104 VGAINPPHFHPRA-TEIAYVVQGSVYSGFVDSS------SRVFARVIKQG--EVMVFPRGLMHFQMNVGDEPATIF 170 (221)
Q Consensus 104 pgg~~ppH~Hp~a-~E~~yVl~G~~~v~~~~~~------~k~~~~~L~~G--Dv~~~P~G~~H~~~N~g~~~a~~l 170 (221)
||-+..+|+|... .+++.|++|++..-+++-. ++.....|.+- ..+.+|+|..|.++|.+++..+++
T Consensus 54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y 129 (173)
T COG1898 54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVY 129 (173)
T ss_pred CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEE
Confidence 8888899999987 8999999999998888632 45556677765 889999999999999998874444
No 56
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=96.97 E-value=0.0012 Score=50.99 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=43.8
Q ss_pred eEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEE
Q 048761 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 95 ~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~ 160 (221)
+.....+-.||.. |++-...|+.++|+|+.++.-. +|+ ...+++||+++||+|..=-+.
T Consensus 45 ~~~GiWe~TpG~~---r~~y~~~E~chil~G~v~~T~d--~Ge--~v~~~aGD~~~~~~G~~g~W~ 103 (116)
T COG3450 45 VETGIWECTPGKF---RVTYDEDEFCHILEGRVEVTPD--GGE--PVEVRAGDSFVFPAGFKGTWE 103 (116)
T ss_pred eeEeEEEecCccc---eEEcccceEEEEEeeEEEEECC--CCe--EEEEcCCCEEEECCCCeEEEE
Confidence 4555556666543 4454569999999999997754 366 499999999999999865554
No 57
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.74 E-value=0.0093 Score=55.61 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=53.9
Q ss_pred CCCCCeEEecCCCC--CCcC-CCCeEEEEecCCCCCCccccceEEEEEEecCCCc-CCCccCCCCcEEEEEEeCcEEEEE
Q 048761 56 ATTDDFVFSGLKSA--GNFS-DTGLATIPVNPTVFPGINTLGMSFVRADLRVGAI-NPPHFHPRATEIAYVVQGSVYSGF 131 (221)
Q Consensus 56 vt~~df~~~~l~~~--~~~~-~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~-~ppH~Hp~a~E~~yVl~G~~~v~~ 131 (221)
+++..+.|..+..| .++. -.|-. + +.-.+.|..+. |+.+....... .+ ...-.+.+++|++++-+|++.+..
T Consensus 86 ~~p~~lrw~p~~~p~~~~~dfvdgl~-t-i~g~gd~~~~~-g~ai~~y~~~~-sM~~~~f~NaDGD~Li~~q~G~l~l~T 161 (424)
T PF04209_consen 86 PTPNQLRWDPFPIPSDEPTDFVDGLR-T-IAGAGDPLSNN-GVAIHVYAANA-SMDDRAFRNADGDELIFPQQGSLRLET 161 (424)
T ss_dssp ---S-EEE-S----TT----TTTTEE-E-EEEECECCCTE-EEEEEEEEE-S----SEEEEESSEEEEEEEEES-EEEEE
T ss_pred CCccccccCCCCCCCcCCCCcccccc-c-cccCccccccC-CcEEEEEEcCC-CCCCcceEcCCCCEEEEEEECCEEEEe
Confidence 46778888876555 2222 23332 2 22335555543 45544333222 22 233446689999999999998765
Q ss_pred EeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 132 VDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 132 ~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
. -|+ ..+++||+++||+|+.+.+.-. ++++.+.+
T Consensus 162 e--~G~---L~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~ 195 (424)
T PF04209_consen 162 E--FGR---LDVRPGDYVVIPRGTRFRVELP--GPARGYII 195 (424)
T ss_dssp T--TEE---EEE-TTEEEEE-TT--EEEE-S--SSEEEEEE
T ss_pred c--Cee---EEEcCCeEEEECCeeEEEEEeC--CCceEEEE
Confidence 3 466 6899999999999999998766 45555543
No 58
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=96.56 E-value=0.024 Score=46.94 Aligned_cols=77 Identities=13% Similarity=0.318 Sum_probs=55.2
Q ss_pred cCCCcCCCccCCCC---cEEEEEEeCcEEEEEEeC------CCceEEEEecCCc--EEEEcCCCeEEEEecCCCCEEEEE
Q 048761 103 RVGAINPPHFHPRA---TEIAYVVQGSVYSGFVDS------SSRVFARVIKQGE--VMVFPRGLMHFQMNVGDEPATIFG 171 (221)
Q Consensus 103 ~pgg~~ppH~Hp~a---~E~~yVl~G~~~v~~~~~------~~k~~~~~L~~GD--v~~~P~G~~H~~~N~g~~~a~~l~ 171 (221)
.+|.+..+|+|... ..++.|++|++..-++|- -|+.....|.+++ .++||+|..|.+.+.+++.. ++.
T Consensus 51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~-v~Y 129 (176)
T PF00908_consen 51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAE-VLY 129 (176)
T ss_dssp ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEE-EEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceE-EEE
Confidence 34777789998754 689999999999888872 2677788998886 69999999999999987643 333
Q ss_pred EEcC-CCCCc
Q 048761 172 SFNS-QNPGN 180 (221)
Q Consensus 172 v~ss-~~pg~ 180 (221)
..+. =+|+.
T Consensus 130 ~~t~~y~p~~ 139 (176)
T PF00908_consen 130 KVTNYYDPED 139 (176)
T ss_dssp EESS---GGG
T ss_pred ecCCccCccc
Confidence 3342 24544
No 59
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=96.54 E-value=0.017 Score=47.81 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=58.4
Q ss_pred cCCCcCCCccCC--CCcEEEEEEeCcEEEEEEeCC------CceEEEEecC--CcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 103 RVGAINPPHFHP--RATEIAYVVQGSVYSGFVDSS------SRVFARVIKQ--GEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 103 ~pgg~~ppH~Hp--~a~E~~yVl~G~~~v~~~~~~------~k~~~~~L~~--GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
.+|.+..+|.|. ....+++|++|++..-++|-. |+.....|.+ +..++||+|..|.+.+.+++ +.++..
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~-a~v~Y~ 130 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE-AEFLYK 130 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC-eEEEEe
Confidence 557777899983 368999999999998888732 5666788887 55999999999999998866 555444
Q ss_pred EcCC-CCCc
Q 048761 173 FNSQ-NPGN 180 (221)
Q Consensus 173 ~ss~-~pg~ 180 (221)
.+.. +|+.
T Consensus 131 ~~~~y~p~~ 139 (176)
T TIGR01221 131 CTDYYAPEY 139 (176)
T ss_pred CCCCcCccc
Confidence 4433 4544
No 60
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.20 E-value=0.0036 Score=54.60 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=53.9
Q ss_pred CCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcC
Q 048761 74 DTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPR 153 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~ 153 (221)
+.|..++.++ ..|.- -++.-..+.++.|....+|+|+ ..|-.|||+|++.++.....+ ...|.+|..+.-|.
T Consensus 154 ~~g~~~a~Lw--gd~~~--g~~~gll~kLPagf~g~i~~h~-~~eraVvI~G~~~~~~~~~~~---~~~L~~GSYf~s~~ 225 (251)
T PF14499_consen 154 PPGAQIAFLW--GDPNT--GQYTGLLLKLPAGFTGRIHTHA-SNERAVVISGELDYQSYGASN---FGTLDPGSYFGSPG 225 (251)
T ss_dssp T-SEEEEEEE--E-TTS---EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEET---TEEEEE-TT-EE--
T ss_pred CCcceEEEEe--cCCCC--CceeeEEEEcCCCCcCceeccC-CceEEEEEEeEEEEeecccCC---CccccCCcccccCC
Confidence 5677776666 33322 2466677788888888999998 799999999999986543222 38999999999999
Q ss_pred CCeEEEEecCCCCEEEEEEEcC
Q 048761 154 GLMHFQMNVGDEPATIFGSFNS 175 (221)
Q Consensus 154 G~~H~~~N~g~~~a~~l~v~ss 175 (221)
+..|... .++++++++.-.+.
T Consensus 226 ~~~H~~~-~~e~~~vlyIRtdG 246 (251)
T PF14499_consen 226 HITHGIF-ITEDECVLYIRTDG 246 (251)
T ss_dssp E-------EESS-EEEEEEESS
T ss_pred ccccccc-ccCCCEEEEEEECC
Confidence 9999998 77888888866553
No 61
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.15 E-value=0.034 Score=46.79 Aligned_cols=69 Identities=19% Similarity=0.360 Sum_probs=47.7
Q ss_pred EEEEEecC-CCcCCCccCCCCcEEEEEEeCcEEEEEEeCCC-----------------------------------ceEE
Q 048761 97 FVRADLRV-GAINPPHFHPRATEIAYVVQGSVYSGFVDSSS-----------------------------------RVFA 140 (221)
Q Consensus 97 ~~rv~l~p-gg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~-----------------------------------k~~~ 140 (221)
...+-+.+ |...++|+.+ ..-++.++.|+=++.+..+.. +.+.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~ 210 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYE 210 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEE
T ss_pred ccEEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeE
Confidence 44566666 4567899987 678999999998887776431 1236
Q ss_pred EEecCCcEEEEcCCCeEEEEecCCCC
Q 048761 141 RVIKQGEVMVFPRGLMHFQMNVGDEP 166 (221)
Q Consensus 141 ~~L~~GDv~~~P~G~~H~~~N~g~~~ 166 (221)
.+|++||+++||+|..|+++|..+++
T Consensus 211 ~~l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 211 VVLEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EEEETT-EEEE-TT-EEEEEESTTSS
T ss_pred EEECCCeEEEECCCCeEEEEEcCCCC
Confidence 89999999999999999999984333
No 62
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.13 E-value=0.018 Score=51.29 Aligned_cols=65 Identities=28% Similarity=0.284 Sum_probs=53.6
Q ss_pred EecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 101 DLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
-++||-...+|.|. .+-+.-|.+|+++..+. |+ ++...+||+|++|.=..|...|. .+.+++++.
T Consensus 267 lL~~Gf~~~~~r~t-~s~iy~V~eGsg~~~Ig---~~--rf~~~~~D~fvVPsW~~~~~~~g-s~da~LFsf 331 (351)
T COG3435 267 LLPPGFHGKAHRHT-DSTIYHVVEGSGYTIIG---GE--RFDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSF 331 (351)
T ss_pred hcCCcccCCceecc-CCEEEEEEecceeEEEC---CE--EeeccCCCEEEccCcceeecccC-CcceEEEec
Confidence 46788888899887 47788899999999886 55 48999999999999988888885 667776643
No 63
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=95.97 E-value=0.066 Score=50.09 Aligned_cols=58 Identities=19% Similarity=0.186 Sum_probs=44.8
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 109 PPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 109 ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
..-.+.+++|++++-+|++.+... -|+ ..+++||+++||+|+.+.+.- .+.+++.+.+
T Consensus 147 ~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyi~ 204 (438)
T PRK05341 147 RYFYNADGELLIVPQQGRLRLATE--LGV---LDVEPGEIAVIPRGVKFRVEL-PDGPARGYVC 204 (438)
T ss_pred ceeecCCCCEEEEEEeCCEEEEEe--ccc---eEecCCCEEEEcCccEEEEec-CCCCeeEEEE
Confidence 344566899999999999997765 377 789999999999999988863 3345555543
No 64
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=95.89 E-value=0.091 Score=49.05 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=46.3
Q ss_pred CCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEc
Q 048761 108 NPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFN 174 (221)
Q Consensus 108 ~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~s 174 (221)
...-.+.+++|++++-+|++.+... -|+ ..+++||+++||+|+.+.+.-.+.....++.++.
T Consensus 140 ~~~f~NaDGD~Livpq~G~l~i~TE--fG~---L~v~pgei~VIPRG~~frv~l~gp~rgyi~E~~g 201 (429)
T TIGR01015 140 NRAFYNADGDFLIVPQQGALLITTE--FGR---LLVEPNEICVIPRGVRFRVTVLEPARGYICEVYG 201 (429)
T ss_pred cceeeccCCCEEEEEEeCcEEEEEe--ccc---eEecCCCEEEecCccEEEEeeCCCceEEEEeccC
Confidence 3444566899999999999997765 377 7899999999999999988765533333343333
No 65
>COG3806 ChrR Transcriptional activator [Transcription]
Probab=95.84 E-value=0.055 Score=45.52 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=68.2
Q ss_pred CCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcC
Q 048761 74 DTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPR 153 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~ 153 (221)
..|+.+..+..... ....++++.+.||..+|-|+|- +-|.+.|++|.. .+++| .+.+||...-+.
T Consensus 112 ~~G~rv~~v~l~~d-----ds~~V~llki~~g~s~P~HtH~-G~E~t~vl~G~~----sde~G-----~y~vgD~~~~d~ 176 (216)
T COG3806 112 GPGGRVEPVRLPTD-----DSRRVALLKIEPGRSFPDHTHV-GIERTAVLEGAF----SDENG-----EYLVGDFTLADG 176 (216)
T ss_pred cCCcceeecccCCC-----CCceeEEEEeccCccccccccc-ceEEEEEEeecc----ccCCC-----ccccCceeecCC
Confidence 34566655544333 3568999999999999999997 799999999975 34444 478899999999
Q ss_pred CCeEEEEecCCCCEEEEEEEcC
Q 048761 154 GLMHFQMNVGDEPATIFGSFNS 175 (221)
Q Consensus 154 G~~H~~~N~g~~~a~~l~v~ss 175 (221)
++.|.-.-..+.++..+++++.
T Consensus 177 ~v~H~piv~~~~eClcl~al~~ 198 (216)
T COG3806 177 TVQHSPIVLPPGECLCLAALDG 198 (216)
T ss_pred ccccccccCCCCCceEEEEcCC
Confidence 9999976677788888888774
No 66
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.83 E-value=0.084 Score=49.35 Aligned_cols=107 Identities=12% Similarity=0.092 Sum_probs=63.2
Q ss_pred CCCCCeEEecCCCCCCcC-CCCeEEEEecCCCCCCccccceEEEEEEecCCC-c-CCCccCCCCcEEEEEEeCcEEEEEE
Q 048761 56 ATTDDFVFSGLKSAGNFS-DTGLATIPVNPTVFPGINTLGMSFVRADLRVGA-I-NPPHFHPRATEIAYVVQGSVYSGFV 132 (221)
Q Consensus 56 vt~~df~~~~l~~~~~~~-~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg-~-~ppH~Hp~a~E~~yVl~G~~~v~~~ 132 (221)
++++.+.|.=+..|.... ..-+..+.+. ...|.++ .|+.+-. +.++. + ...-.+.+++|++++-+|++.+...
T Consensus 88 ~~p~qlrW~P~~~p~~~~Dfv~gl~tl~g-ngD~~~~-~G~ai~i--y~~n~sM~~~~f~NaDGD~Livpq~G~l~i~TE 163 (435)
T PLN02658 88 TTPTQLRWRPFPVPDSPVDFVDGLFTVCG-AGSPFLR-HGYAIHM--YVANKSMDDCAFCNADGDFLIVPQQGRLWIKTE 163 (435)
T ss_pred CCccccccCCCCCCcCCCCchhhhhhhhc-CCCcccc-cCcEEEE--EeCCCCCccceeecCCCCEEEEEEeCCEEEEEe
Confidence 667777777554432111 2222222222 2334332 2444332 23332 3 2335567899999999999997765
Q ss_pred eCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 133 DSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 133 ~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
-|+ ..+++||+++||+|+.+.+.- .+++++.+.+
T Consensus 164 --fG~---L~v~pgei~VIPRG~~frv~l-~~gp~rgyv~ 197 (435)
T PLN02658 164 --LGK---LQVSPGEIVVIPRGFRFAVDL-PDGPSRGYVL 197 (435)
T ss_pred --ccc---eEecCCCEEEecCccEEEEec-CCCCeeEEEE
Confidence 377 689999999999999988753 2345555433
No 67
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=95.62 E-value=0.056 Score=46.25 Aligned_cols=76 Identities=21% Similarity=0.351 Sum_probs=47.7
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEe-CcEEEEEEeCC--C--------------ceE------EEEecCCcEEEEcCC
Q 048761 98 VRADLRVGAINPPHFHPRATEIAYVVQ-GSVYSGFVDSS--S--------------RVF------ARVIKQGEVMVFPRG 154 (221)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~E~~yVl~-G~~~v~~~~~~--~--------------k~~------~~~L~~GDv~~~P~G 154 (221)
..+-+.+|...|.|+|..-.|=++--- |.+.+.+..++ + +.+ ...|+||+.+-+++|
T Consensus 90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg 169 (225)
T PF07385_consen 90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG 169 (225)
T ss_dssp EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence 346678899999999999889887775 57777766532 1 110 368999999999999
Q ss_pred CeEEEEecCCCCEEEEEEEcC
Q 048761 155 LMHFQMNVGDEPATIFGSFNS 175 (221)
Q Consensus 155 ~~H~~~N~g~~~a~~l~v~ss 175 (221)
+.|+++..+.. +++.=+|+
T Consensus 170 ~yH~Fw~e~g~--vLigEVSt 188 (225)
T PF07385_consen 170 IYHWFWGEGGD--VLIGEVST 188 (225)
T ss_dssp EEEEEEE-TTS--EEEEEEEE
T ss_pred CeeeEEecCCC--EEEEeeec
Confidence 99999986544 55554453
No 68
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=95.50 E-value=0.069 Score=40.68 Aligned_cols=64 Identities=28% Similarity=0.405 Sum_probs=46.6
Q ss_pred CCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcC--CCeEEEEecCC-CCEEEEEE
Q 048761 105 GAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPR--GLMHFQMNVGD-EPATIFGS 172 (221)
Q Consensus 105 gg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~--G~~H~~~N~g~-~~a~~l~v 172 (221)
+..+++|-|.+-+-+.||++|+++-. |+.|. ...|++||+-++-+ |+.|.-.|.++ +++..+-+
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H~--Ds~G~--~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRHR--DSLGN--RGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEEE--ETTSE--EEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEEE--CCCCC--eeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 55568999986666789999988643 55554 37899999988875 57999999887 77777644
No 69
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=95.30 E-value=0.17 Score=45.45 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=44.2
Q ss_pred EEEEEEecCCC--cCCCccCCCCcEEEEEEeCcEEEEEEeCC------------------CceEEEEecCCcEEEEcCCC
Q 048761 96 SFVRADLRVGA--INPPHFHPRATEIAYVVQGSVYSGFVDSS------------------SRVFARVIKQGEVMVFPRGL 155 (221)
Q Consensus 96 s~~rv~l~pgg--~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~------------------~k~~~~~L~~GDv~~~P~G~ 155 (221)
..+.+.+.|++ .+.||+=. .+-+++=++|+=+..+.... ......+|++||++++|+|.
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D~-~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~ 192 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYDD-HDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGW 192 (319)
T ss_dssp EEEEEEEETSSBEESECEE-S-SEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-
T ss_pred cceEEEecCCCCCCccCEECC-cccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCc
Confidence 34455677777 68999976 46677778898777776521 01236899999999999999
Q ss_pred eEEEEecC
Q 048761 156 MHFQMNVG 163 (221)
Q Consensus 156 ~H~~~N~g 163 (221)
+|.....+
T Consensus 193 ~H~~~~~~ 200 (319)
T PF08007_consen 193 WHQAVTTD 200 (319)
T ss_dssp EEEEEESS
T ss_pred cCCCCCCC
Confidence 99999988
No 70
>PF12852 Cupin_6: Cupin
Probab=95.27 E-value=0.082 Score=43.28 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=36.0
Q ss_pred cEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecC
Q 048761 117 TEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVG 163 (221)
Q Consensus 117 ~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g 163 (221)
.-+.+|++|+.++.+.+. ++ ...|++||++++|+|..|.+....
T Consensus 36 ~~fh~V~~G~~~l~~~~~-~~--~~~L~~GDivllp~g~~H~l~~~~ 79 (186)
T PF12852_consen 36 ASFHVVLRGSCWLRVPGG-GE--PIRLEAGDIVLLPRGTAHVLSSDP 79 (186)
T ss_pred eEEEEEECCeEEEEEcCC-CC--eEEecCCCEEEEcCCCCeEeCCCC
Confidence 568889999999997531 23 489999999999999999996443
No 71
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=95.25 E-value=0.082 Score=45.24 Aligned_cols=74 Identities=14% Similarity=0.058 Sum_probs=59.0
Q ss_pred ccceEEEEEEecCCCcCCC-ccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEE
Q 048761 92 TLGMSFVRADLRVGAINPP-HFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIF 170 (221)
Q Consensus 92 ~~g~s~~rv~l~pgg~~pp-H~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 170 (221)
...|.+..++++||+.+|- -+|- -+-=+|||||++...+. +. ...+++||.+..-+-.+.+.+..|....++|
T Consensus 179 r~Dmhv~ivsFePGa~ip~aEtHv-mEHGlyvLeGk~vYrLn---~d--wv~V~aGD~mwm~A~cpQacyagG~g~frYL 252 (264)
T COG3257 179 RFDMHVHIVSFEPGASIPYAETHV-MEHGLYVLEGKGVYRLN---NN--WVPVEAGDYIWMGAYCPQACYAGGRGAFRYL 252 (264)
T ss_pred CcceEEEEEEecCCcccchhhhhh-hhcceEEEecceEEeec---Cc--eEEeecccEEEeeccChhhhccCCCCceEEE
Confidence 3468899999999999873 5564 34468999999999885 34 3899999999999988888888887766665
Q ss_pred E
Q 048761 171 G 171 (221)
Q Consensus 171 ~ 171 (221)
-
T Consensus 253 l 253 (264)
T COG3257 253 L 253 (264)
T ss_pred E
Confidence 4
No 72
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=94.99 E-value=0.096 Score=45.64 Aligned_cols=49 Identities=22% Similarity=0.257 Sum_probs=38.6
Q ss_pred CccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 110 PHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 110 pH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
||-+. +-++.++++|++.+... ++ .+.+++||++++|+|.+|......+
T Consensus 44 ~~~~~-~~~i~~~~~G~~~~~~~---~~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMK-GYILNLTIRGQGVIFNG---GR--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCcc-ceEEEEEEeccEEEecC---Ce--eEecCCCCEEEECCCCceeeccCCC
Confidence 44443 57889999999998653 45 4999999999999999998765443
No 73
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=94.96 E-value=0.13 Score=43.14 Aligned_cols=78 Identities=22% Similarity=0.254 Sum_probs=49.5
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEE-eCcEEEEEEeCC----------------CceE------EEEecCCcEEEEcCC
Q 048761 98 VRADLRVGAINPPHFHPRATEIAYVV-QGSVYSGFVDSS----------------SRVF------ARVIKQGEVMVFPRG 154 (221)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~E~~yVl-~G~~~v~~~~~~----------------~k~~------~~~L~~GDv~~~P~G 154 (221)
..+-+.+|...|.|.|++..|=++=- .|++.+.+...+ |+.. ...|+||+.+-+|+|
T Consensus 89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesitL~Pg 168 (225)
T COG3822 89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESITLPPG 168 (225)
T ss_pred eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEecCCC
Confidence 34567799999999999655533322 234444443221 1100 268999999999999
Q ss_pred CeEEEEecCCCCEEEEEEEcCCC
Q 048761 155 LMHFQMNVGDEPATIFGSFNSQN 177 (221)
Q Consensus 155 ~~H~~~N~g~~~a~~l~v~ss~~ 177 (221)
+.|+++..+.. +++.-.|+-|
T Consensus 169 ~~HsFwae~g~--vlvgEvSsvn 189 (225)
T COG3822 169 LYHSFWAEEGG--VLVGEVSSVN 189 (225)
T ss_pred ceeeeeecCCc--EEEEEEeecc
Confidence 99999975543 4444444433
No 74
>COG1741 Pirin-related protein [General function prediction only]
Probab=94.89 E-value=0.11 Score=45.94 Aligned_cols=72 Identities=28% Similarity=0.403 Sum_probs=54.6
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcC--CCeEEEEec--CCCCEEEEEEEc
Q 048761 99 RADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPR--GLMHFQMNV--GDEPATIFGSFN 174 (221)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~--G~~H~~~N~--g~~~a~~l~v~s 174 (221)
...+.||.-++||-|.+-+-+.||++|+++-. |+.|.. ..+++||+-.+-+ |..|.-.|. .++++..+-+.-
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn~--~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv 123 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGNK--GVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWV 123 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCce--eeecccceeEEcCCCceeecccCCccCCCccceeeeec
Confidence 45688999999999986666789999998754 444442 8999999988886 579999886 344666665554
No 75
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=94.68 E-value=0.11 Score=38.46 Aligned_cols=69 Identities=32% Similarity=0.415 Sum_probs=33.4
Q ss_pred EEecCCCcCCCccCCCCc--EEEEEE--eCcEEEEEEeCC------------------CceEEEEecCCcEEEEcCCCeE
Q 048761 100 ADLRVGAINPPHFHPRAT--EIAYVV--QGSVYSGFVDSS------------------SRVFARVIKQGEVMVFPRGLMH 157 (221)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~--E~~yVl--~G~~~v~~~~~~------------------~k~~~~~L~~GDv~~~P~G~~H 157 (221)
...++|+...+|.|+++. =++||- ++...+.+.++. ...+....++||+++||.-+.|
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H 84 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWH 84 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEE
Confidence 356788899999998632 234432 223333444331 1233568899999999999999
Q ss_pred EEE-ecCCCCEE
Q 048761 158 FQM-NVGDEPAT 168 (221)
Q Consensus 158 ~~~-N~g~~~a~ 168 (221)
... |.++++-+
T Consensus 85 ~v~p~~~~~~Ri 96 (101)
T PF13759_consen 85 GVPPNNSDEERI 96 (101)
T ss_dssp EE----SSS-EE
T ss_pred eccCcCCCCCEE
Confidence 975 44554433
No 76
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=94.61 E-value=0.057 Score=45.94 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=47.7
Q ss_pred CCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEec
Q 048761 104 VGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNV 162 (221)
Q Consensus 104 pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~ 162 (221)
|+...-.|..+ ..|++|=.+|...+.+.+. ++.....+++||++..|+.++|+-+--
T Consensus 42 PN~RkdyHiee-geE~FyQ~KGdMvLKVie~-g~~rDivI~qGe~flLParVpHSPqRF 98 (279)
T KOG3995|consen 42 PNTRKDYHIEE-GEEVFYQLKGDMVLKVLEQ-GKHRDVVIRQGEIFLLPARVPHSPQRF 98 (279)
T ss_pred CCcccccccCC-cchhheeecCceEEeeecc-CcceeeEEecCcEEEeccCCCCChhhh
Confidence 44555678887 7999999999999999875 566689999999999999999985443
No 77
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=94.13 E-value=0.37 Score=39.09 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=48.8
Q ss_pred CCCCCCccc--cceEEEEEEecCCCcCCCccCCCCcE----EEEEE-eCcEEEEEEeCCCceEEEEecCCcEEEEcCCCe
Q 048761 84 PTVFPGINT--LGMSFVRADLRVGAINPPHFHPRATE----IAYVV-QGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLM 156 (221)
Q Consensus 84 ~~~~P~l~~--~g~s~~rv~l~pgg~~ppH~Hp~a~E----~~yVl-~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~ 156 (221)
..++|.... .-..+....+.||+.+.||.-+.... +-.++ .+...+.+. ++ .+..++|++++|.-...
T Consensus 67 l~~lp~~~~~~~~~~~~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~~v~---~~--~~~w~~G~~~~fD~s~~ 141 (163)
T PF05118_consen 67 LEQLPGVTGGCPLGRVRFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYIRVG---GE--TRHWREGECWVFDDSFE 141 (163)
T ss_dssp CCCSHHHHCSTTCEEEEEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEEEET---TE--EEB--CTEEEEE-TTS-
T ss_pred HHhCcccccccchhhEEEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEEEEC---Ce--EEEeccCcEEEEeCCEE
Confidence 345555443 22345556779999999998764222 22233 234444443 44 48899999999999999
Q ss_pred EEEEecCCCCEEEEE
Q 048761 157 HFQMNVGDEPATIFG 171 (221)
Q Consensus 157 H~~~N~g~~~a~~l~ 171 (221)
|...|.|+++-+.+.
T Consensus 142 H~~~N~~~~~Rv~L~ 156 (163)
T PF05118_consen 142 HEVWNNGDEDRVVLI 156 (163)
T ss_dssp EEEEESSSS-EEEEE
T ss_pred EEEEeCCCCCEEEEE
Confidence 999999987655553
No 78
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=93.74 E-value=0.47 Score=42.04 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=56.0
Q ss_pred cceEEEEEEecCCC-c--CCCccCCCCcEEEE---EEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCC
Q 048761 93 LGMSFVRADLRVGA-I--NPPHFHPRATEIAY---VVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEP 166 (221)
Q Consensus 93 ~g~s~~rv~l~pgg-~--~ppH~Hp~a~E~~y---Vl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 166 (221)
-.+-+....+.||+ . .|||.|.+..|..+ +-++...+.+..+-++..-..++-+|+++.|+=.+|... |...
T Consensus 173 ~qLlmG~tvltPGg~WSSyPPHkHDrr~E~YlYf~l~~~qrV~h~mG~pdETrh~~v~n~~aVisP~wsih~g~--gt~~ 250 (276)
T PRK00924 173 CQLVMGLTELEPGSVWNTMPCHTHDRRMEVYFYFDMPEDARVFHFMGEPQETRHIVVHNEQAVISPSWSIHSGV--GTSN 250 (276)
T ss_pred ccEEEEEEEEcCCCCCCCCCCccCCCCcceEEEEEcCCCceEEecCCCccceeeEEEECCCEEECCCcceecCc--Cccc
Confidence 35677777789998 4 49999997777544 223333333332223322378999999999999999764 4556
Q ss_pred EEEEEEEcCCC
Q 048761 167 ATIFGSFNSQN 177 (221)
Q Consensus 167 a~~l~v~ss~~ 177 (221)
-.+|+....+|
T Consensus 251 y~fiw~m~gen 261 (276)
T PRK00924 251 YTFIWGMAGEN 261 (276)
T ss_pred cEEEEEecccC
Confidence 67888877666
No 79
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=93.72 E-value=0.44 Score=41.62 Aligned_cols=66 Identities=9% Similarity=0.060 Sum_probs=46.5
Q ss_pred ceEEEEEEecCCCcC-----CCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 94 GMSFVRADLRVGAIN-----PPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 94 g~s~~rv~l~pgg~~-----ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
++.+.++...+.... ..|.+.+.--++++++|++.+... |+ ...+++||++++|++.+|.+.-.++
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~---g~--~~~l~~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQD---DR--QVQLAAGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEEC---Ce--EEEEcCCCEEEEECCCCcEeecCCC
Confidence 456777766665332 234444445577789999998765 55 3899999999999999998765444
No 80
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=93.58 E-value=0.36 Score=40.80 Aligned_cols=78 Identities=28% Similarity=0.316 Sum_probs=46.6
Q ss_pred EEEEEEecCCCcCCCccCCCC--cEEEEEE--eCcEEEEEEeCCC------------------ceEEEEecCCcEEEEcC
Q 048761 96 SFVRADLRVGAINPPHFHPRA--TEIAYVV--QGSVYSGFVDSSS------------------RVFARVIKQGEVMVFPR 153 (221)
Q Consensus 96 s~~rv~l~pgg~~ppH~Hp~a--~E~~yVl--~G~~~v~~~~~~~------------------k~~~~~L~~GDv~~~P~ 153 (221)
.+-...+++|+....|.|+++ +=++||- +|.....|.++.- ......-++||+++||.
T Consensus 97 ~~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS 176 (201)
T TIGR02466 97 KAWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFES 176 (201)
T ss_pred eEeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECC
Confidence 445567789999999999974 2344444 2223333332210 01113448999999999
Q ss_pred CCeEEEE-ecCCCCEEEEEEEc
Q 048761 154 GLMHFQM-NVGDEPATIFGSFN 174 (221)
Q Consensus 154 G~~H~~~-N~g~~~a~~l~v~s 174 (221)
-+.|... |.++++ ++-..|+
T Consensus 177 ~L~H~v~p~~~~~~-RISiSFN 197 (201)
T TIGR02466 177 WLRHEVPPNESEEE-RISVSFN 197 (201)
T ss_pred CCceecCCCCCCCC-EEEEEEe
Confidence 9999975 455443 3333443
No 81
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=93.54 E-value=0.35 Score=42.50 Aligned_cols=61 Identities=7% Similarity=-0.064 Sum_probs=46.9
Q ss_pred cCCCcCCCccC-CCCcEEEEEEeCcEEEEEEeCCCce-EEEEecC-CcEEEEcCCCeEEEEecC
Q 048761 103 RVGAINPPHFH-PRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQ-GEVMVFPRGLMHFQMNVG 163 (221)
Q Consensus 103 ~pgg~~ppH~H-p~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~-GDv~~~P~G~~H~~~N~g 163 (221)
-|++...+|.| +...|.+.|++|++.+.+-++++.. ....+.+ ++.-++|++..|...-.+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s 82 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAAS 82 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcC
Confidence 36778889998 6778999999999999888776643 3345555 456579999999998754
No 82
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=93.49 E-value=0.15 Score=37.88 Aligned_cols=29 Identities=38% Similarity=0.627 Sum_probs=21.7
Q ss_pred ceEEEEecCCcEEEEcCCCeEEEEecCCC
Q 048761 137 RVFARVIKQGEVMVFPRGLMHFQMNVGDE 165 (221)
Q Consensus 137 k~~~~~L~~GDv~~~P~G~~H~~~N~g~~ 165 (221)
+.++.+-++||.+++|+|..|+..|.|..
T Consensus 79 ~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~ 107 (114)
T PF02373_consen 79 PVYRFVQKPGEFVFIPPGAYHQVFNLGDN 107 (114)
T ss_dssp --EEEEEETT-EEEE-TT-EEEEEESSSE
T ss_pred ccccceECCCCEEEECCCceEEEEeCCce
Confidence 34568899999999999999999999864
No 83
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=93.16 E-value=0.47 Score=40.12 Aligned_cols=83 Identities=20% Similarity=0.243 Sum_probs=59.5
Q ss_pred ccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCC----------ceEEE-------EecCCc-EEEEcC
Q 048761 92 TLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSS----------RVFAR-------VIKQGE-VMVFPR 153 (221)
Q Consensus 92 ~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~----------k~~~~-------~L~~GD-v~~~P~ 153 (221)
...+++...-++||..+|+|=||+-+=+.-|+.|++.+.-.+--. +.... .-.+++ .+..|.
T Consensus 41 ~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~ 120 (200)
T PF07847_consen 41 DEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPT 120 (200)
T ss_pred CCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccC
Confidence 346788888999999999999998777777999999987654211 00001 112223 345554
Q ss_pred --CCeEEEEecCCCCEEEEEEEcC
Q 048761 154 --GLMHFQMNVGDEPATIFGSFNS 175 (221)
Q Consensus 154 --G~~H~~~N~g~~~a~~l~v~ss 175 (221)
|-+|.+.+.+ +++.++-++..
T Consensus 121 ~ggNiH~f~a~~-~p~AflDIL~P 143 (200)
T PF07847_consen 121 SGGNIHEFTALT-GPCAFLDILAP 143 (200)
T ss_pred CCCeeEEEEeCC-CCeEEEEEccC
Confidence 5899999987 89999999883
No 84
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.05 E-value=0.8 Score=41.92 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=50.9
Q ss_pred cceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEE
Q 048761 93 LGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFG 171 (221)
Q Consensus 93 ~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~ 171 (221)
.|+.+-...+..+-....-+..+.+|++|+-+|++.+...- |. ..+++||..+||+|+.-...-...+ ++.+.
T Consensus 123 ~g~~i~~y~~n~sm~~~~f~NADge~Livpq~G~l~l~te~--G~---l~v~pgeiavIPRG~~frve~~~~~-~rgy~ 195 (427)
T COG3508 123 DGVAIHVYKVNESMTKRFFRNADGELLIVPQQGELRLKTEL--GV---LEVEPGEIAVIPRGTTFRVELKDGE-ARGYG 195 (427)
T ss_pred CceEEEEEEccccchhhhhhcCCCCEEEEeecceEEEEEee--ce---EEecCCcEEEeeCCceEEEEecCCc-eEEEE
Confidence 35555443333332224556778999999999999876543 65 7999999999999999888765444 44443
No 85
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=93.03 E-value=0.53 Score=35.21 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=43.3
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEc
Q 048761 98 VRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFN 174 (221)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~s 174 (221)
..+.++||+.......+...-++||++|++.+. ++. ..+.+|+++++..|..=.+.+.+ +.++++.+-.
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~-----~~~--~~~~~~~~~~l~~g~~i~~~a~~-~~a~~lll~G 70 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEVG-----GEE--DPLEAGQLVVLEDGDEIELTAGE-EGARFLLLGG 70 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEET-----TTT--EEEETTEEEEE-SECEEEEEESS-SSEEEEEEEE
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEEC-----CCc--ceECCCcEEEECCCceEEEEECC-CCcEEEEEEc
Confidence 457888887653222222356999999998653 332 67999999999977655565553 6777764433
No 86
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=92.57 E-value=0.53 Score=32.33 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=41.1
Q ss_pred EecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 048761 101 DLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMN 161 (221)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N 161 (221)
++.||....++-.. ...+.|.+|++.++.. +....+-|++||.+.+++|.--++..
T Consensus 3 ~L~~g~~~~lr~~~--~~~l~v~~G~vWlT~~---g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLSLRAAA--GQRLRVESGRVWLTRE---GDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEEeEcCC--CcEEEEccccEEEECC---CCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 56677666665443 3449999999999875 33346999999999999997655543
No 87
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=92.45 E-value=2.7 Score=33.44 Aligned_cols=105 Identities=15% Similarity=0.059 Sum_probs=66.1
Q ss_pred CCCeEEEEecCCCCCCcc------ccceEEEEEEecCCCcCCCccCCCCcEEEEEEeC-cEEEEEEeCCCceEEEEec--
Q 048761 74 DTGLATIPVNPTVFPGIN------TLGMSFVRADLRVGAINPPHFHPRATEIAYVVQG-SVYSGFVDSSSRVFARVIK-- 144 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~------~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G-~~~v~~~~~~~k~~~~~L~-- 144 (221)
|.|+..++.......... ....+..+.-+.++....+|.- +++|+++-..| .+++.+.+++++.....|.
T Consensus 14 pEGG~fret~rs~~~~~~~~~~~~R~~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d 92 (139)
T PF06172_consen 14 PEGGYFRETYRSPETVSPPSLGPSRSASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSYETVVLGPD 92 (139)
T ss_dssp TTSSEEEEEEE-SSEEECCTCSSCEES-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTEEEEEESST
T ss_pred CCCccEEEEEECCCcccCCCCCCCcccceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCC
Confidence 556666665543321111 2246677777888888888876 58999999998 6999999888876565663
Q ss_pred --CCc--EEEEcCCCeEEEEecCCCCEEEEEEEcCCCCCce
Q 048761 145 --QGE--VMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQ 181 (221)
Q Consensus 145 --~GD--v~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg~~ 181 (221)
+|+ .+++|+|.....+..+...-.++...- -||+.
T Consensus 93 ~~~g~~~q~vVp~G~W~aa~l~~~~~y~Lvsc~V--aPGF~ 131 (139)
T PF06172_consen 93 LAAGERPQVVVPAGTWQAAELEPEGDYSLVSCTV--APGFD 131 (139)
T ss_dssp TCTTEBSEEEE-TTSEEEEEECESSSEEEEEEEE--SSC--
T ss_pred CCCCceEEEEECCCEEEEccccCCCCEEEEEEEE--cCCCc
Confidence 454 489999988887655555555554333 36664
No 88
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=92.31 E-value=1.2 Score=33.13 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=41.4
Q ss_pred EecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEE
Q 048761 101 DLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSF 173 (221)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ 173 (221)
.+.||- .+....+.|+.-|++|++++.+-++ .. .+.+++|+.|.+|++.--.++.. ++..+++.+
T Consensus 29 Vm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~-~e--w~~~~aGesF~VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 29 VMLPGE---YTFGTSAPERMEVVSGELEVKLPGE-DE--WQTYSAGESFEVPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp EE-SEC---EEEEESS-EEEEEEESEEEEEETT--SS---EEEETT-EEEE-TTEEEEEEES--S-EEEEEEE
T ss_pred EEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCC-cc--cEEeCCCCeEEECCCCeEEEEEC--cceeeEEEe
Confidence 455654 2233346899999999999998643 23 48999999999999987766653 455555543
No 89
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=92.20 E-value=1 Score=39.49 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=52.3
Q ss_pred eEEEEecCCCCCCccccceEEEEEEecCCCc--CCCccCCCC--------cEEEEE-Ee---CcEEEEEEeCC-CceEEE
Q 048761 77 LATIPVNPTVFPGINTLGMSFVRADLRVGAI--NPPHFHPRA--------TEIAYV-VQ---GSVYSGFVDSS-SRVFAR 141 (221)
Q Consensus 77 ~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~--~ppH~Hp~a--------~E~~yV-l~---G~~~v~~~~~~-~k~~~~ 141 (221)
-.|......+.+. .-.+-+..+.-++|.. .|||.|.+. +|+.|- +. |-+.-.+.+.+ ......
T Consensus 135 R~V~~~i~~~~~~--~~~Lv~get~~~~G~WsSyPPH~Hd~~~~~~e~~leEiYyf~~~p~~Gfg~q~~y~~~~~~d~~~ 212 (261)
T PF04962_consen 135 RTVRNIIDPNVPP--ASRLVVGETITPGGNWSSYPPHKHDRRMEPDETELEEIYYFRFNPPQGFGFQRVYTDDPQLDEHY 212 (261)
T ss_dssp EEEEEEESTTT-----SS-EEEEEEETTT-EES-SEEE-CCEEEESEECTEEEEEEESSTTS-EEEEEEE-TTSSSEEEE
T ss_pred EEEEEeeCCCCcc--cceEEEEEEEeCCCccCCcCCccCCCcCCCccccceeEEEEEccCcccEEEEEEECCCCCCcEEE
Confidence 3444454444442 2245666655444443 499999852 565554 22 22221112111 223368
Q ss_pred EecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCC
Q 048761 142 VIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQN 177 (221)
Q Consensus 142 ~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~ 177 (221)
.++-||++.+|+| -|-+.......+.+|.++...+
T Consensus 213 ~V~~~d~V~iP~g-yHp~~aapGy~~Yylw~maG~~ 247 (261)
T PF04962_consen 213 VVRNGDAVLIPSG-YHPVVAAPGYDMYYLWVMAGEN 247 (261)
T ss_dssp EEETTEEEEESTT-B-SEEEEEESSEEEEEEEESSS
T ss_pred EEECCCEEEeCCC-CCCcCcCCCcCcEEEEEEEcCC
Confidence 9999999999999 4455444445667888888776
No 90
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=0.15 Score=48.35 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=43.1
Q ss_pred cCCC-cCCCccCCCCcEEEEEEeCcEEEEEEeCC-------------------C-ceEEEEecCCcEEEEcCCCeEEEEe
Q 048761 103 RVGA-INPPHFHPRATEIAYVVQGSVYSGFVDSS-------------------S-RVFARVIKQGEVMVFPRGLMHFQMN 161 (221)
Q Consensus 103 ~pgg-~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~-------------------~-k~~~~~L~~GDv~~~P~G~~H~~~N 161 (221)
+||+ .++|||-. -+-++.=++|+=...+..+. | -+....|++||+++||+|.+|....
T Consensus 325 PagSqGfaPHyDd-IeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t 403 (629)
T KOG3706|consen 325 PAGSQGFAPHYDD-IEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADT 403 (629)
T ss_pred CCCCCCCCCchhh-hhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeeccc
Confidence 4554 47999985 56677788998766655432 1 1224789999999999999998765
Q ss_pred cC
Q 048761 162 VG 163 (221)
Q Consensus 162 ~g 163 (221)
..
T Consensus 404 ~~ 405 (629)
T KOG3706|consen 404 PA 405 (629)
T ss_pred cc
Confidence 44
No 91
>COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily [General function prediction only]
Probab=91.80 E-value=1 Score=36.91 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=46.8
Q ss_pred eEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEE---eCC---CceEEEEecCCcEEEEcCCCeEEEEecCCCCEE
Q 048761 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV---DSS---SRVFARVIKQGEVMVFPRGLMHFQMNVGDEPAT 168 (221)
Q Consensus 95 ~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~---~~~---~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~ 168 (221)
+++..+++.||...|+|-|- -.-++=|+.|.=+-.+. .+. .....+.+.+|++- .-+|-+|.+.|.+.....
T Consensus 73 ltV~~~t~~PG~~~p~HnH~-~wglVgil~G~E~n~~y~~~~~~~~~P~~qdk~~apgeV~-lSpgdihsv~n~~sdrs~ 150 (191)
T COG5553 73 LTVYHITLSPGVQYPPHNHL-MWGLVGILWGGETNFIYPLAGEEVDEPERQDKFAAPGEVH-LSPGDIHSVANTGSDRSG 150 (191)
T ss_pred EEEEEEEeCCCcccCCcccc-hheeeeeeecccccceecccCCCCCCcchhhhhcCcceEe-eCCCCeeeecccCCCccc
Confidence 68999999999999999995 56677788874322211 110 01113456666666 444667777766654433
Q ss_pred EEEEE
Q 048761 169 IFGSF 173 (221)
Q Consensus 169 ~l~v~ 173 (221)
.|=++
T Consensus 151 aiHvy 155 (191)
T COG5553 151 AIHVY 155 (191)
T ss_pred eEEEE
Confidence 33333
No 92
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.73 E-value=0.92 Score=41.68 Aligned_cols=75 Identities=15% Similarity=0.192 Sum_probs=52.8
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSF 173 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ 173 (221)
.+.+.++++++|...-.-.-+ +.-++.|++|++++...+ +++ ..+++||+++||+...-.+. ..+++...+-++
T Consensus 332 eF~v~~~~v~~g~~~~~~~~~-~~SIllv~~G~g~l~~~t-~~~---~~v~rG~V~fI~a~~~i~~~-~~sd~~~~yrAf 405 (411)
T KOG2757|consen 332 EFAVLETKVPTGESYKFPGVD-GPSILLVLKGSGILKTDT-DSK---ILVNRGDVLFIPANHPIHLS-SSSDPFLGYRAF 405 (411)
T ss_pred ceeEEEeecCCCceEEeecCC-CceEEEEEecceEEecCC-CCc---eeeccCcEEEEcCCCCceee-ccCcceeeeecc
Confidence 578889999997653333333 577999999999988753 233 89999999999999765443 344445555444
Q ss_pred c
Q 048761 174 N 174 (221)
Q Consensus 174 s 174 (221)
.
T Consensus 406 ~ 406 (411)
T KOG2757|consen 406 S 406 (411)
T ss_pred c
Confidence 4
No 93
>PRK10579 hypothetical protein; Provisional
Probab=91.70 E-value=1.3 Score=32.98 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=40.4
Q ss_pred CCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 115 RATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 115 ~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
.+.|+.-|++|++++.+-++ ...+.+++|+.|.+|++.--.++.. +...+++.
T Consensus 40 ~~~E~MeivsG~l~V~Lpg~---~ew~~~~aG~sF~VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 40 AEPEEMTVISGALNVLLPGA---TDWQVYEAGEVFNVPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred CCcEEEEEEeeEEEEECCCC---cccEEeCCCCEEEECCCCeEEEEEC--cceeeEEE
Confidence 37899999999999998643 2358999999999999987766553 34445443
No 94
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=91.25 E-value=2.6 Score=32.84 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=46.2
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIF 170 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 170 (221)
++.+.++.....-.+...-+.+.--+.+.++|...+... ++ ...+.+||+++++++.++.+...++.....+
T Consensus 33 ~~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~~---g~--~~~~~pg~~~l~d~~~~~~~~~~~~~~~~~l 104 (172)
T PF14525_consen 33 GLRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQG---GR--EVELAPGDVVLLDPGQPYRLEFSAGCRQLSL 104 (172)
T ss_pred CEEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEEC---CE--EEEEcCCeEEEEcCCCCEEEEECCCccEEEE
Confidence 356666666543332111112234466678888887765 45 4999999999999999988876544443333
No 95
>PLN02288 mannose-6-phosphate isomerase
Probab=90.22 E-value=0.94 Score=42.14 Aligned_cols=58 Identities=19% Similarity=0.162 Sum_probs=40.9
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCC
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGL 155 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~ 155 (221)
.+.+.++++.++.......+ ++.++++|++|++++... +......|++|+++++|++.
T Consensus 333 eF~v~~~~l~~~~~~~~~~~-~gp~Illv~~G~~~i~~~---~~~~~~~l~~G~~~fv~a~~ 390 (394)
T PLN02288 333 EFEVDHCDVPPGASVVFPAV-PGPSVFLVIEGEGVLSTG---SSEDGTAAKRGDVFFVPAGT 390 (394)
T ss_pred ceEEEEEEeCCCCeEeecCC-CCCEEEEEEcCEEEEecC---CccceEEEeceeEEEEeCCC
Confidence 57888888887754222223 367899999999998543 22113569999999999864
No 96
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=89.68 E-value=1.9 Score=39.96 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=41.7
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~ 160 (221)
.+.+.++++..+..... ....++++|++|++++... +. +..|++|+++++|++......
T Consensus 320 ~F~~~~~~l~~~~~~~~---~~~~~Illv~~G~~~i~~~---~~--~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 320 DFAFSLHDLSDQPTTLS---QQSAAILFCVEGEAVLWKG---EQ--QLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CcEEEEEEECCceEEec---CCCcEEEEEEcceEEEEeC---Ce--EEEECCCCEEEEeCCCccEEE
Confidence 46677777765422222 2357999999999998632 33 378999999999998766654
No 97
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=88.92 E-value=2.8 Score=30.36 Aligned_cols=48 Identities=17% Similarity=0.030 Sum_probs=36.8
Q ss_pred cEEEEEEeCcEEEEEEeCCCc--eEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 117 TEIAYVVQGSVYSGFVDSSSR--VFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 117 ~E~~yVl~G~~~v~~~~~~~k--~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
-.-+.|++|++.+...++++. .....+.+|+.-++++...|.+.-.++
T Consensus 26 Wg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~ 75 (82)
T PF09313_consen 26 WGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSD 75 (82)
T ss_dssp EEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESST
T ss_pred EEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCC
Confidence 346789999999998876532 235789999999999999999987765
No 98
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=88.16 E-value=3.3 Score=36.86 Aligned_cols=60 Identities=22% Similarity=0.155 Sum_probs=42.6
Q ss_pred cceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEE
Q 048761 93 LGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 93 ~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~ 160 (221)
.-+.+.++++...... ..+ ....+++|++|++++... +. ...|++|+.+++|++.-....
T Consensus 233 ~~F~~~~~~~~~~~~~--~~~-~~~~il~v~~G~~~i~~~---~~--~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 233 EYFSVYKWDISGKAEF--IQQ-QSALILSVLEGSGRIKSG---GK--TLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCeEEEEEEeCCceee--ccC-CCcEEEEEEcceEEEEEC---CE--EEEEecccEEEEccCCccEEE
Confidence 3577888887644211 123 367899999999988642 33 378999999999999865544
No 99
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=87.82 E-value=5.4 Score=33.61 Aligned_cols=122 Identities=13% Similarity=0.087 Sum_probs=76.3
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCce-EEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
+.......+++|..+-..=.+ ...+++|++|.+.+...+++|+. ....+.+||++-+..+..+.....--++++++.+
T Consensus 35 ~~~~~~~~~~kge~l~~~Gd~-~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~~~~~~~~~A~~ds~v~~i 113 (230)
T PRK09391 35 GLVASEFSYKKGEEIYGEGEP-ADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESGSTHRFTAEAIVDTTVRLI 113 (230)
T ss_pred cceeeeEEECCCCEEECCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCCCcCCeEEEEcCceEEEEE
Confidence 456777889998775433333 57899999999999988777763 3455689999877665544333333345554433
Q ss_pred Ec-------CCCCCcee----------------------------cccch------------hcCCCCHHHHHHHhCCCH
Q 048761 173 FN-------SQNPGNQK----------------------------IPSAI------------FGSGIDVELLEKAFGLSP 205 (221)
Q Consensus 173 ~s-------s~~pg~~~----------------------------~~~~l------------f~~~~p~evla~af~~~~ 205 (221)
-. ..+|.... +...+ +.-.++.+-||...|+++
T Consensus 114 ~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rla~~Ll~l~~~~g~~~~i~i~lt~~~IA~~lGisr 193 (230)
T PRK09391 114 KRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMERVAAFLLEMDERLGGAGMMALPMSRRDIADYLGLTI 193 (230)
T ss_pred EHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCH
Confidence 22 12443310 00111 011467789999999999
Q ss_pred HHHHHhhhcCC
Q 048761 206 KQIGTMRRRFD 216 (221)
Q Consensus 206 ~~v~~l~~~~~ 216 (221)
+++.|+.+.+.
T Consensus 194 etlsR~L~~L~ 204 (230)
T PRK09391 194 ETVSRALSQLQ 204 (230)
T ss_pred HHHHHHHHHHH
Confidence 99888766543
No 100
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=87.53 E-value=1.4 Score=40.55 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=42.8
Q ss_pred EecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCC--ce---------------EEEEecCCcEEEEcCCCeEEEEecC
Q 048761 101 DLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSS--RV---------------FARVIKQGEVMVFPRGLMHFQMNVG 163 (221)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~--k~---------------~~~~L~~GDv~~~P~G~~H~~~N~g 163 (221)
-.++||.+.+|+-+ -+-+++=..|+=+..+....+ .. ....|.+||++++|+|.+|+-+..+
T Consensus 125 ~a~~GGgvg~H~D~-YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~ 203 (383)
T COG2850 125 FAAPGGGVGPHFDQ-YDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAED 203 (383)
T ss_pred EecCCCccCccccc-hheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccc
Confidence 45678899999987 355555555555555543211 00 1368999999999999999988763
No 101
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=86.78 E-value=2 Score=29.53 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=34.0
Q ss_pred EecCCCcC-CCccCCCCcEEEEEEeCcEEEEEEeCCCce-EEEEecCCcEE
Q 048761 101 DLRVGAIN-PPHFHPRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQGEVM 149 (221)
Q Consensus 101 ~l~pgg~~-ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~GDv~ 149 (221)
++++|..+ ..+-+ ...+++|++|.+.+...+.+++. ....+.+||++
T Consensus 3 ~~~~g~~i~~~g~~--~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~ 51 (91)
T PF00027_consen 3 TYKKGEVIYRQGDP--CDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIF 51 (91)
T ss_dssp EESTTEEEEETTSB--ESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEE
T ss_pred EECCCCEEEeCCCc--CCEEEEEEECceEEEeceecceeeeecceeeeccc
Confidence 56666554 33333 58999999999999998776653 25688888886
No 102
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=83.21 E-value=11 Score=30.70 Aligned_cols=119 Identities=14% Similarity=0.135 Sum_probs=70.9
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCc-eEEEEecCCcEEEEc----CCCeEEEEecCCCCEEEEEE
Q 048761 98 VRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSR-VFARVIKQGEVMVFP----RGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k-~~~~~L~~GDv~~~P----~G~~H~~~N~g~~~a~~l~v 172 (221)
....+++|..+-..=.+ ...+++|++|.+.+...+.+|+ .....+.+||++-.. .+..+...-...+++.++.+
T Consensus 21 ~~~~~~kg~~l~~~g~~-~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~~~~v~~i 99 (211)
T PRK11753 21 HIHKYPAKSTLIHAGEK-AETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEI 99 (211)
T ss_pred eEEEeCCCCEEEeCCCC-CCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCceEEEEEcCcEEEEEE
Confidence 45688888765433333 5789999999999987766554 334678999997443 22222222223445555543
Q ss_pred Ec-------CCCCCcee----------------------------cccch---------------hcCCCCHHHHHHHhC
Q 048761 173 FN-------SQNPGNQK----------------------------IPSAI---------------FGSGIDVELLEKAFG 202 (221)
Q Consensus 173 ~s-------s~~pg~~~----------------------------~~~~l---------------f~~~~p~evla~af~ 202 (221)
-. .++|.... +...+ +.-.++.+-||+-+|
T Consensus 100 ~~~~~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lG 179 (211)
T PRK11753 100 SYKKFRQLIQVNPDILMALSAQMARRLQNTSRKVGDLAFLDVTGRIAQTLLDLAKQPDAMTHPDGMQIKITRQEIGRIVG 179 (211)
T ss_pred cHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcCCcCCCCceecCCCHHHHHHHhC
Confidence 22 23454410 01111 011467788999999
Q ss_pred CCHHHHHHhhhcCCC
Q 048761 203 LSPKQIGTMRRRFDP 217 (221)
Q Consensus 203 ~~~~~v~~l~~~~~~ 217 (221)
++++++.|+.+.+..
T Consensus 180 ~tr~tvsR~l~~l~~ 194 (211)
T PRK11753 180 CSREMVGRVLKMLED 194 (211)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999988766543
No 103
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=81.83 E-value=5.5 Score=32.34 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=36.2
Q ss_pred EEEecCCCcCCCccCC-CCcEEEEEEeCcEEEEEEeCCCceE-EEEecCCcEEEE
Q 048761 99 RADLRVGAINPPHFHP-RATEIAYVVQGSVYSGFVDSSSRVF-ARVIKQGEVMVF 151 (221)
Q Consensus 99 rv~l~pgg~~ppH~Hp-~a~E~~yVl~G~~~v~~~~~~~k~~-~~~L~~GDv~~~ 151 (221)
...+++|..+-..--+ ....+++|++|.+.+...+++|+.. ...+.+||++-.
T Consensus 8 ~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 8 TVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred eeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 4567777654222121 1467999999999999888777643 455699998754
No 104
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=77.15 E-value=17 Score=32.35 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=37.9
Q ss_pred CcE-EEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEe--cCCCCEEEEEE
Q 048761 116 ATE-IAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMN--VGDEPATIFGS 172 (221)
Q Consensus 116 a~E-~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N--~g~~~a~~l~v 172 (221)
..| .++.+.|++.+.+. |+. +.|.+.|.+++|+|..-.... ....++.+...
T Consensus 73 rrE~giV~lgG~~~V~vd---G~~--~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~ 127 (276)
T PRK00924 73 RRELGIINIGGAGTVTVD---GET--YELGHRDALYVGKGAKEVVFASADAANPAKFYLN 127 (276)
T ss_pred CcEEEEEEccceEEEEEC---CEE--EecCCCcEEEECCCCcEEEEEecCCCCCcEEEEE
Confidence 455 56678899999975 554 669999999999998766654 23456666544
No 105
>PLN02868 acyl-CoA thioesterase family protein
Probab=76.21 E-value=9.2 Score=35.40 Aligned_cols=53 Identities=9% Similarity=0.057 Sum_probs=39.0
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEE
Q 048761 98 VRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVF 151 (221)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~ 151 (221)
....+++|..+-.-=.+ ...+++|++|++++...+.+++.....+++||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~-~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEP-GDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCc-CceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 34577888765333233 678999999999998877666655678899998863
No 106
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=75.93 E-value=19 Score=32.61 Aligned_cols=59 Identities=15% Similarity=0.124 Sum_probs=41.5
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~ 160 (221)
.+++.+.++..-... .+ + +...+++|++|++++... ++ ...|++|+.+++|+...-+..
T Consensus 241 ~F~l~~~~i~~~~~~-~~-~-~~~~il~v~eG~~~l~~~---~~--~~~l~~G~s~~ipa~~~~~~i 299 (312)
T COG1482 241 DFALYKWDISGTAEF-IK-Q-ESFSILLVLEGEGTLIGG---GQ--TLKLKKGESFFIPANDGPYTI 299 (312)
T ss_pred ceEEEEEeccChhhh-cc-C-CCcEEEEEEcCeEEEecC---CE--EEEEcCCcEEEEEcCCCcEEE
Confidence 466777766641111 12 2 268999999999998764 44 499999999999998655443
No 107
>PF04622 ERG2_Sigma1R: ERG2 and Sigma1 receptor like protein; InterPro: IPR006716 This family consists of the fungal C-8 sterol isomerase and mammalian sigma1 receptor. C-8 sterol isomerase (delta-8--delta-7 sterol isomerase), catalyses a reaction in ergosterol biosynthesis, which results in unsaturation at C-7 in the B ring of sterols []. Sigma 1 receptor is a low molecular mass mammalian protein located in the endoplasmic reticulum [], which interacts with endogenous steroid hormones, such as progesterone and testosterone []. It also binds the sigma ligands, which are a set of chemically unrelated drugs including haloperidol, pentazocine, and ditolylguanidine []. Sigma1 effectors are not well understood, but sigma1 agonists have been observed to affect NMDA receptor function, the alpha-adrenergic system and opioid analgesia.; GO: 0000247 C-8 sterol isomerase activity, 0006696 ergosterol biosynthetic process, 0005783 endoplasmic reticulum
Probab=75.24 E-value=6.8 Score=33.56 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=57.1
Q ss_pred CcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCCCCc--eec
Q 048761 106 AINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGN--QKI 183 (221)
Q Consensus 106 g~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg~--~~~ 183 (221)
|....|| ++-..+|++|+...-.. |+......++||..+.|+|......-..+ .-++.--..--|-. +..
T Consensus 112 GhsGrh~---ad~y~tIL~G~~~~~~~---g~~~~evy~pGd~~~l~rg~a~~y~m~~~--tw~LEY~RG~IP~~lpf~~ 183 (216)
T PF04622_consen 112 GHSGRHW---ADDYFTILSGEQWAWSP---GSLEPEVYKPGDSHHLPRGEAKQYQMPPG--TWALEYGRGWIPSMLPFGF 183 (216)
T ss_pred CCCcceE---eeeEEEEEEEEEEEEcC---CCCCceEeccCCEEEecCceEEEEEeCCC--eEEEEecCCchhhhhHHHH
Confidence 4445554 67789999999876543 44446899999999999998887665433 22332111111211 123
Q ss_pred ccchhcCCCCHHHHHHHhCCCHHH
Q 048761 184 PSAIFGSGIDVELLEKAFGLSPKQ 207 (221)
Q Consensus 184 ~~~lf~~~~p~evla~af~~~~~~ 207 (221)
.+++|+ .++-..+-++..+..++
T Consensus 184 ~dt~~s-TlDf~t~~~T~~~~~~~ 206 (216)
T PF04622_consen 184 ADTLFS-TLDFPTLYRTVYITARE 206 (216)
T ss_pred HHHHHh-ccchHHHHHHHHHHHHH
Confidence 456665 66666677766665543
No 108
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.96 E-value=10 Score=27.79 Aligned_cols=41 Identities=27% Similarity=0.189 Sum_probs=33.2
Q ss_pred CcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEE
Q 048761 116 ATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQ 159 (221)
Q Consensus 116 a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~ 159 (221)
+.|...|+.|.+++.+.++ .+ .++..+|+.|.+|.+.-.-+
T Consensus 41 ~~E~Mtvv~Gal~v~lpgs-~d--Wq~~~~Ge~F~VpgnS~F~l 81 (94)
T COG3123 41 APEEMTVVSGALTVLLPGS-DD--WQVYTAGEVFNVPGNSEFDL 81 (94)
T ss_pred CceEEEEEeeEEEEEcCCC-cc--cEEecCCceEEcCCCCeEEE
Confidence 6799999999999998754 23 48999999999998764433
No 109
>PRK03606 ureidoglycolate hydrolase; Provisional
Probab=74.16 E-value=25 Score=28.71 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=47.1
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEeCC-----CceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 109 PPHFHPRATEIAYVVQGSVYSGFVDSS-----SRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 109 ppH~Hp~a~E~~yVl~G~~~v~~~~~~-----~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
..-.||..+|.++-+.|+-.+-++.++ ++...+..+.|+.+.+-+|++|...-.=+.+..++.+
T Consensus 72 ~mERHp~~sQafiPl~~~~~lvvVA~~~~~~~~~~raF~~~~~qgV~y~~G~WH~pl~~l~~~~dF~vv 140 (162)
T PRK03606 72 MLERHPLGSQAFIPLNGRPFLVVVAPDGDGDPGTPRAFVTNGRQGVNYHRGVWHHPLLALGEVSDFLVV 140 (162)
T ss_pred eEEeCCCceEEEEECCCCEEEEEEeCCCCCCccceEEEEecCCcEEEeCCCcccccccccCCCceEEEE
Confidence 345678789999999999887777653 2456799999999999999999754322344555433
No 110
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=73.52 E-value=19 Score=29.28 Aligned_cols=81 Identities=25% Similarity=0.276 Sum_probs=44.9
Q ss_pred ceEEEEEEecCCCc--CCCccCCCCcEEEEEEeCcE-EEEEEeCC------CceEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 94 GMSFVRADLRVGAI--NPPHFHPRATEIAYVVQGSV-YSGFVDSS------SRVFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 94 g~s~~rv~l~pgg~--~ppH~Hp~a~E~~yVl~G~~-~v~~~~~~------~k~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
++++.|..-.+.-. .-.-.|+..+|.++-+.|+. .+-++-.+ ++...+.+..|+.+.+-+|++|...-.=+
T Consensus 56 ~~si~~~~~~~~p~~v~~lERHp~tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~gqgV~~~~GvWH~~~~~l~ 135 (165)
T PF04115_consen 56 GISIFRAQPRELPFEVSMLERHPLTSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGGQGVNYHRGVWHHPLLPLD 135 (165)
T ss_dssp EEEEEEEEBE-SSEEEEEEEE-TTB-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS-EEEE-TT-EE-S-EESS
T ss_pred EEEEEEeeccCCccccceeccCCCeeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCCEEEEECCCceeCCccccC
Confidence 45555553333221 23455777899999999987 44444322 35567999999999999999999544334
Q ss_pred CCEEEEEEEc
Q 048761 165 EPATIFGSFN 174 (221)
Q Consensus 165 ~~a~~l~v~s 174 (221)
+++.++.+-.
T Consensus 136 ~~~~f~vv~~ 145 (165)
T PF04115_consen 136 EPADFLVVDR 145 (165)
T ss_dssp SEEEEEEEEE
T ss_pred CcceEEEEeC
Confidence 6677776633
No 111
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=72.69 E-value=17 Score=26.08 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=37.3
Q ss_pred EEecCCCcCCCccCC---CCcEEEEE--Ee-Cc-----EEEEEEeC---CCceEEEE-----ecCCcEEEEcC-CCeEEE
Q 048761 100 ADLRVGAINPPHFHP---RATEIAYV--VQ-GS-----VYSGFVDS---SSRVFARV-----IKQGEVMVFPR-GLMHFQ 159 (221)
Q Consensus 100 v~l~pgg~~ppH~Hp---~a~E~~yV--l~-G~-----~~v~~~~~---~~k~~~~~-----L~~GDv~~~P~-G~~H~~ 159 (221)
..+.+|+...||+.. ....+.++ +. .. ++..+... ++...... .++|++++|+. ...|..
T Consensus 4 ~~y~~G~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~~~~~H~v 83 (100)
T PF13640_consen 4 NRYPPGGFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPSDNSLHGV 83 (100)
T ss_dssp EEEETTEEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEESCTCEEEE
T ss_pred EEECcCCEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeCCCCeecC
Confidence 355888888999875 33333333 44 22 34444432 12222233 88999999999 999998
Q ss_pred Eec
Q 048761 160 MNV 162 (221)
Q Consensus 160 ~N~ 162 (221)
.-.
T Consensus 84 ~~v 86 (100)
T PF13640_consen 84 TPV 86 (100)
T ss_dssp EEE
T ss_pred ccc
Confidence 766
No 112
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=70.87 E-value=24 Score=30.91 Aligned_cols=69 Identities=16% Similarity=0.092 Sum_probs=44.5
Q ss_pred eEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCC--------cEEEEcCCCeEEEEecCCCC
Q 048761 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQG--------EVMVFPRGLMHFQMNVGDEP 166 (221)
Q Consensus 95 ~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~G--------Dv~~~P~G~~H~~~N~g~~~ 166 (221)
+.+..+++++|.....-.. +.+-.++.++|++++.+. |+. .+.|..- |++++|+|..-.+.+.++
T Consensus 27 ~~~~~l~L~~g~~~~~~~~-~~E~~vv~l~G~~~v~~~---g~~-~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~-- 99 (261)
T PF04962_consen 27 MGFGVLRLEAGESLEFELE-RRELGVVNLGGKATVTVD---GEE-FYELGGRESVFDGPPDALYVPRGTKVVIFASTD-- 99 (261)
T ss_dssp BECCCEEEECCHCCCCCCC-SEEEEEEEESSSEEEEET---TEE-EEEE-TTSSGGGS--EEEEE-TT--EEEEESST--
T ss_pred cceEEEEecCCCEEeccCC-CcEEEEEEeCCEEEEEeC---Cce-EEEecccccccCCCCcEEEeCCCCeEEEEEcCC--
Confidence 4455678888876654443 335566778999999984 421 3667776 999999999877777544
Q ss_pred EEEE
Q 048761 167 ATIF 170 (221)
Q Consensus 167 a~~l 170 (221)
+.+.
T Consensus 100 ae~~ 103 (261)
T PF04962_consen 100 AEFA 103 (261)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 5554
No 113
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=70.44 E-value=6.8 Score=35.60 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=34.5
Q ss_pred ceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcCCCCCce
Q 048761 137 RVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNSQNPGNQ 181 (221)
Q Consensus 137 k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss~~pg~~ 181 (221)
+......++|+.+++|.|..|-+.|...+-|+---..+.+|-+++
T Consensus 261 kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~~V 305 (407)
T KOG2130|consen 261 KPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFPFV 305 (407)
T ss_pred CCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCcee
Confidence 344678999999999999999999987766555544555666554
No 114
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=69.55 E-value=2.6 Score=37.45 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.6
Q ss_pred EEEecCCcEEEEcCCCeEE
Q 048761 140 ARVIKQGEVMVFPRGLMHF 158 (221)
Q Consensus 140 ~~~L~~GDv~~~P~G~~H~ 158 (221)
...+++||++++|+|.+|.
T Consensus 152 ~v~v~~Gd~i~ipaGt~HA 170 (302)
T TIGR00218 152 RIKLKPGDFFYVPSGTPHA 170 (302)
T ss_pred ccccCCCCEEEeCCCCccc
Confidence 3789999999999999997
No 115
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=69.30 E-value=22 Score=24.81 Aligned_cols=53 Identities=11% Similarity=0.051 Sum_probs=35.7
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCc-eEEEEecCCcEEEE
Q 048761 98 VRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSR-VFARVIKQGEVMVF 151 (221)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k-~~~~~L~~GDv~~~ 151 (221)
....+++|..+-. .......+.+|++|.+.+...+.+++ .....+.+||.+-.
T Consensus 18 ~~~~~~~g~~l~~-~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 71 (120)
T smart00100 18 EPVRYPAGEVIIR-QGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGE 71 (120)
T ss_pred eEEEeCCCCEEEe-CCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceech
Confidence 3456778876522 22336789999999999887654443 34577788887644
No 116
>PHA02890 hypothetical protein; Provisional
Probab=69.04 E-value=39 Score=29.76 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=35.0
Q ss_pred EEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 048761 119 IAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMN 161 (221)
Q Consensus 119 ~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N 161 (221)
++.+++|+..+..... ++..+..+++||.|.+.-+.-|....
T Consensus 95 FVlCL~Gs~~In~~~~-d~~iS~~I~kGeaF~mdv~t~H~i~T 136 (278)
T PHA02890 95 FVACIEGSCKINVNIG-DREISDHIHENQGFIMDVGLDHAIDS 136 (278)
T ss_pred EEEEeCCeEEEEEecC-CceeeeeeecCceEEEEccceEEEEc
Confidence 4456789999887743 56678999999999999999999876
No 117
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=68.57 E-value=20 Score=24.97 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=34.9
Q ss_pred EEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCc-eEEEEecCCcEEE
Q 048761 98 VRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSR-VFARVIKQGEVMV 150 (221)
Q Consensus 98 ~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k-~~~~~L~~GDv~~ 150 (221)
...++++|...-..--+ ...+.+|++|.+.+...+++|+ .....+.+|+++-
T Consensus 18 ~~~~~~~g~~l~~~~~~-~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g 70 (115)
T cd00038 18 EERRFPAGEVIIRQGDP-ADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFG 70 (115)
T ss_pred eeeeeCCCCEEEcCCCC-CCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcC
Confidence 44567777765222122 4779999999999988766543 3456778888763
No 118
>PHA02984 hypothetical protein; Provisional
Probab=65.83 E-value=40 Score=29.89 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=37.7
Q ss_pred EEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEE
Q 048761 119 IAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIF 170 (221)
Q Consensus 119 ~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 170 (221)
++.+++|+..+..... ++..+..+++||.|.+.-+.-|..... +..++++
T Consensus 96 FvlCl~G~~~I~~~~~-~~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L~ 145 (286)
T PHA02984 96 FVLCLNGKTSIECFNK-GSKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHLA 145 (286)
T ss_pred EEEEcCCeEEEEEecC-CceeeeEEecCceEEEEccceEEEEeC-CCceEEE
Confidence 4557789999888754 455689999999999999999998643 3334433
No 119
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=65.36 E-value=5.5 Score=35.96 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEecCCcEEEEcCCCeEEEE
Q 048761 140 ARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 140 ~~~L~~GDv~~~P~G~~H~~~ 160 (221)
...|++||.+++|+|.+|...
T Consensus 159 ~v~lkpGe~~fl~Agt~HA~~ 179 (312)
T COG1482 159 RVKLKPGEAFFLPAGTPHAYL 179 (312)
T ss_pred EEecCCCCEEEecCCCceeec
Confidence 378999999999999999874
No 120
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=65.18 E-value=22 Score=31.62 Aligned_cols=46 Identities=2% Similarity=-0.055 Sum_probs=37.3
Q ss_pred cEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCC
Q 048761 117 TEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEP 166 (221)
Q Consensus 117 ~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~ 166 (221)
.-++++.+|...+...+ ++ ...+.++..+++|++..|.+.|...+.
T Consensus 39 ~~li~v~~G~~~i~~~~--g~--~l~i~~p~~~~~p~~~~~~~~~~~~~~ 84 (291)
T PRK15186 39 SVLIKLTTGKISITTSS--GE--YITASGPMLIFLAKDQTIHITMEETHE 84 (291)
T ss_pred eEEEEeccceEEEEeCC--Cc--eEEeCCCeEEEEeCCcEEEEEecccCC
Confidence 45899999999987642 44 378999999999999999999876544
No 121
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=63.67 E-value=23 Score=29.60 Aligned_cols=52 Identities=6% Similarity=-0.042 Sum_probs=36.3
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCce-EEEEecCCcEEEE
Q 048761 99 RADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQGEVMVF 151 (221)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~GDv~~~ 151 (221)
...+++|..+-.. ......+.+|++|.+.+...+.+|+. ....+.+||++-.
T Consensus 33 ~~~~~kge~l~~~-G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 33 LFHFLAREYIVQE-GQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred heeeCCCCEEEcC-CCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 3467777655222 22257899999999999988777763 3456889998754
No 122
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=63.12 E-value=61 Score=26.86 Aligned_cols=51 Identities=10% Similarity=0.087 Sum_probs=35.1
Q ss_pred EEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCce-EEEEecCCcEEEE
Q 048761 100 ADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQGEVMVF 151 (221)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~GDv~~~ 151 (221)
..+++|..+-.-=- ....+++|++|.+.+...+++|+. ....+.+||++-.
T Consensus 40 ~~~~kge~l~~~Gd-~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 40 KPIQKGQTLFKAGD-ELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred eeecCCCEeECCCC-CcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 46777765432222 256799999999999988777654 3345589999854
No 123
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=63.04 E-value=6.2 Score=36.63 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=18.9
Q ss_pred EEEecCCcEEEEcCCCeEEEE
Q 048761 140 ARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 140 ~~~L~~GDv~~~P~G~~H~~~ 160 (221)
...|++||.+++|+|.+|...
T Consensus 238 ~v~l~pGeaifipAg~~HAyl 258 (389)
T PRK15131 238 VVKLNPGEAMFLFAETPHAYL 258 (389)
T ss_pred EEEeCCCCEEEeCCCCCeEEc
Confidence 478999999999999999874
No 124
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=62.76 E-value=33 Score=28.56 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=35.4
Q ss_pred EEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEE
Q 048761 99 RADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMV 150 (221)
Q Consensus 99 rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~ 150 (221)
...+++|..+- +-......+++|++|.+.+.....+++.....+.+||++-
T Consensus 32 ~~~~~~ge~l~-~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g 82 (236)
T PRK09392 32 LQRFPPGTMLI-TEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFI 82 (236)
T ss_pred eeecCCCCEEE-eCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhh
Confidence 45677776653 2233367899999999999876544454457788899764
No 125
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=61.76 E-value=28 Score=27.63 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=39.1
Q ss_pred EEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCce-EEEEecCCcEEEEcC
Q 048761 96 SFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQGEVMVFPR 153 (221)
Q Consensus 96 s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~GDv~~~P~ 153 (221)
......+++|...-..--+ +.-+++|++|.+.+....++|+. ....+.+||++-...
T Consensus 22 ~~~~~~~~~g~~l~~~g~~-~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 22 KLEVRKLPKGEVLFTEGEE-ADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred hceeEeeCCCCEEEcCCCc-CceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 3445566777554333333 45589999999999999877653 334688999986663
No 126
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=56.77 E-value=1.6e+02 Score=26.85 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=51.2
Q ss_pred CCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEEEcC--CCCCceecc
Q 048761 108 NPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGSFNS--QNPGNQKIP 184 (221)
Q Consensus 108 ~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v~ss--~~pg~~~~~ 184 (221)
...-+..+++=+++--+|.+.+... -|| ..+.++++.+||+|+-..+--.|..+-.++.++.. +-|..-.|.
T Consensus 147 ~safyNsDGDFLiVPQ~G~L~I~TE--fGr---llV~P~EI~VIpqG~RFsi~v~~~sRGYilEvYg~HF~LPDLGPIG 220 (446)
T KOG1417|consen 147 NSAFYNSDGDFLIVPQQGRLWITTE--FGR---LLVTPNEIAVIPQGIRFSIDVPGPSRGYILEVYGAHFQLPDLGPIG 220 (446)
T ss_pred cceeecCCCCEEEecccCcEEEEee--ccc---eeecccceEEeecccEEEEecCCCCcceEEEEecceeecCCCCccc
Confidence 3455666666566666787776543 477 78999999999999988887778888888888874 344444443
No 127
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=54.49 E-value=87 Score=25.81 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=46.2
Q ss_pred CCccCCCCcEEEEEEeC-cEEEEEEeCC-----CceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEEEE
Q 048761 109 PPHFHPRATEIAYVVQG-SVYSGFVDSS-----SRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIFGS 172 (221)
Q Consensus 109 ppH~Hp~a~E~~yVl~G-~~~v~~~~~~-----~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l~v 172 (221)
..-.||..++.+.-+.| ...+-++.++ +....+....|+.+.+-+|++|...-.=+.+..++++
T Consensus 72 ~mERHp~~sQafiPl~~~~~~lvVvap~~~~~pd~~~aF~~~g~qgV~y~~GtWH~pl~~L~~~~dF~vv 141 (171)
T PRK13395 72 MMERHPLGSQAFIPLAAVSRYAVVVAPAGEFRPDEMRAFLAEGWQGVNYAKGVWHHPLLALDAVSDFVVV 141 (171)
T ss_pred eEEECCCceEEEEECCCCCCEEEEEccCCCCCCCceEEEEecCCcEEEeCCCcccccccccCCCccEEEE
Confidence 34567778999998999 7666666443 2456799999999999999999964433344556654
No 128
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=54.01 E-value=1.1e+02 Score=26.82 Aligned_cols=77 Identities=16% Similarity=0.081 Sum_probs=51.6
Q ss_pred CCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCC----C-ceEEEEecCCcEEEEcCCCeEEEE
Q 048761 86 VFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSS----S-RVFARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 86 ~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~----~-k~~~~~L~~GDv~~~P~G~~H~~~ 160 (221)
+-++..- +.+..+++++|.....-.-. .+-++++++|++++...+.. | |.-.+.=++=|.+++|.|..-.+.
T Consensus 22 ~sagw~Y--VGF~~~~L~~Ges~~~~~~~-~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vt 98 (270)
T COG3718 22 ESAGWEY--VGFRLLRLAAGESATEETGD-RERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVT 98 (270)
T ss_pred CCCCcee--EEEEEEEccCCCcccccCCC-ceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEE
Confidence 3445544 34445678899877666554 35677789999999876432 2 322244456799999999988887
Q ss_pred ecCCC
Q 048761 161 NVGDE 165 (221)
Q Consensus 161 N~g~~ 165 (221)
..++.
T Consensus 99 A~t~~ 103 (270)
T COG3718 99 ATTDL 103 (270)
T ss_pred eecce
Confidence 76554
No 129
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=53.08 E-value=31 Score=27.50 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=27.7
Q ss_pred CcEEEEEEeCcEEEEEEeCCCceE-EEEecCCcEEE
Q 048761 116 ATEIAYVVQGSVYSGFVDSSSRVF-ARVIKQGEVMV 150 (221)
Q Consensus 116 a~E~~yVl~G~~~v~~~~~~~k~~-~~~L~~GDv~~ 150 (221)
...+++|++|.+.+...+++|+.. ...+.+||++-
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 456899999999998887776643 46789999874
No 130
>KOG4281 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.14 E-value=6.7 Score=33.59 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=34.1
Q ss_pred ccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEE
Q 048761 92 TLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFV 132 (221)
Q Consensus 92 ~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~ 132 (221)
+.++|+...-++|++++|+|-||.-+-+.-++=|++.+.-.
T Consensus 72 cD~FSigiFclp~ss~IPLHdHPgM~v~sKllyGtmhVksy 112 (236)
T KOG4281|consen 72 CDRFSIGIFCLPPSSVIPLHDHPGMTVLSKLLYGTMHVKSY 112 (236)
T ss_pred cCceeEEEEEcCCCCeeecCCCcchHHHHHhhhceeEeeec
Confidence 34789999999999999999999766666778898887654
No 131
>COG3717 KduI 5-keto 4-deoxyuronate isomerase [Carbohydrate transport and metabolism]
Probab=50.46 E-value=67 Score=28.11 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=50.8
Q ss_pred ceEEEEEEecCCCc---CCCccCCCCcEEEEEE---eCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCE
Q 048761 94 GMSFVRADLRVGAI---NPPHFHPRATEIAYVV---QGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPA 167 (221)
Q Consensus 94 g~s~~rv~l~pgg~---~ppH~Hp~a~E~~yVl---~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a 167 (221)
.+++....++||.. .|.|.|.|..|..+-. +-+-.+.+-..-++..-..++--+.++-|+=.+|.-. |...-
T Consensus 176 QL~mG~T~L~pgsvWNTMP~H~HdRRmE~YlYF~m~e~srVfH~MGqP~ETRHiv~~NEqAViSP~WSIHSG~--GT~~Y 253 (278)
T COG3717 176 QLSMGLTMLAPGSVWNTMPCHVHDRRMEVYLYFDMDEDSRVFHMMGQPQETRHIVMHNEQAVISPPWSIHSGV--GTANY 253 (278)
T ss_pred hhhhcceeecCCCccccCCccccccceeEEEEecCCCcceEEEecCCCCceeEEEEeccceeeCCCceeecCc--cccce
Confidence 46667778999975 4999999999876432 1222223322223333355666667777777778653 44556
Q ss_pred EEEEEEcCCC
Q 048761 168 TIFGSFNSQN 177 (221)
Q Consensus 168 ~~l~v~ss~~ 177 (221)
.+|+....+|
T Consensus 254 tFIWaMaGeN 263 (278)
T COG3717 254 TFIWAMAGEN 263 (278)
T ss_pred EEEEEecccc
Confidence 7777776655
No 132
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=48.53 E-value=89 Score=21.61 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=33.0
Q ss_pred EEeCcEEEEEEeCCC-ceEEEEecCCcEEEEcCCCeEEEEecCCCCEEEE
Q 048761 122 VVQGSVYSGFVDSSS-RVFARVIKQGEVMVFPRGLMHFQMNVGDEPATIF 170 (221)
Q Consensus 122 Vl~G~~~v~~~~~~~-k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~l 170 (221)
-..|+..+++.+.+| ..+...+++||..-++.+..- ....|+-.++-+
T Consensus 4 ~a~~~sWv~V~d~dG~~~~~~~l~~G~~~~~~~~~~~-~i~iGna~~v~v 52 (77)
T PF13464_consen 4 TATGDSWVEVTDADGKVLFSGTLKAGETKTFEGKEPF-RIRIGNAGAVEV 52 (77)
T ss_pred EEeCCeEEEEEeCCCcEeeeeeeCCCcEEEEeCCCCE-EEEEeCCCcEEE
Confidence 345888888886666 567899999999998544433 345566555544
No 133
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=47.17 E-value=22 Score=33.00 Aligned_cols=60 Identities=23% Similarity=0.380 Sum_probs=41.4
Q ss_pred CCCcCCCc---cCCCCcEEEEEEeCcEEEEEEeCCC-------------------------ceEEEEecCCcEEEEcCCC
Q 048761 104 VGAINPPH---FHPRATEIAYVVQGSVYSGFVDSSS-------------------------RVFARVIKQGEVMVFPRGL 155 (221)
Q Consensus 104 pgg~~ppH---~Hp~a~E~~yVl~G~~~v~~~~~~~-------------------------k~~~~~L~~GDv~~~P~G~ 155 (221)
.|...|.| +|. .-+-..+-|+=+.-+..+.. ...+..=++|+++++|.|.
T Consensus 207 ~gSwtp~HaDVf~s--~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Qepge~VFvPsGW 284 (427)
T KOG2131|consen 207 AGSWTPFHADVFHS--PSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQEPGETVFVPSGW 284 (427)
T ss_pred CCCCCccchhhhcC--CcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhccCCceeeccCcc
Confidence 35567888 663 45666777766655554421 1112344799999999999
Q ss_pred eEEEEecCCC
Q 048761 156 MHFQMNVGDE 165 (221)
Q Consensus 156 ~H~~~N~g~~ 165 (221)
-|...|.+++
T Consensus 285 ~hQV~NL~dT 294 (427)
T KOG2131|consen 285 HHQVLNLGDT 294 (427)
T ss_pred ccccccccce
Confidence 9999999986
No 134
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=44.55 E-value=17 Score=27.03 Aligned_cols=11 Identities=36% Similarity=0.670 Sum_probs=7.0
Q ss_pred CCchHHHHHHH
Q 048761 1 MSPKLFVLFVI 11 (221)
Q Consensus 1 ~~~~~~~~~~~ 11 (221)
|.+|.++|+.|
T Consensus 1 MaSK~~llL~l 11 (95)
T PF07172_consen 1 MASKAFLLLGL 11 (95)
T ss_pred CchhHHHHHHH
Confidence 77776666543
No 135
>PRK10202 ebgC cryptic beta-D-galactosidase subunit beta; Reviewed
Probab=44.00 E-value=1.6e+02 Score=23.35 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEeCCC------------------ceEEEEecCCcEEEEcCCCeEEEE
Q 048761 109 PPHFHPRATEIAYVVQGSVYSGFVDSSS------------------RVFARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 109 ppH~Hp~a~E~~yVl~G~~~v~~~~~~~------------------k~~~~~L~~GDv~~~P~G~~H~~~ 160 (221)
.+-.|.+--.+-|+++|+=.+++....+ ......|++|+.++|-++.+|.-.
T Consensus 58 ~~E~Hr~YiDIq~~l~G~E~i~~~~~~~~~~~~~y~~e~D~~f~~~~~~~v~l~~G~F~iffP~daH~P~ 127 (149)
T PRK10202 58 LFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEGQIVICDIHEAYRFI 127 (149)
T ss_pred cccccccEEEEEEEEeCeEEEEEEEcccCccccccCcccCeeeccCCCcEEEeCCCeEEEECCcccccCC
Confidence 4455666788999999988877754221 001468889999999999998764
No 136
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=43.18 E-value=94 Score=24.52 Aligned_cols=65 Identities=17% Similarity=0.314 Sum_probs=43.5
Q ss_pred CCccccceEEEEEEecCCCcCCCccCCCCcEEEEEE----eCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 048761 88 PGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVV----QGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMN 161 (221)
Q Consensus 88 P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl----~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N 161 (221)
|+++. +.+.++.+++|.....- +..|+...+ .|.+.+++.++.+ ..+++||++-+-.|..-.+++
T Consensus 12 P~~kN--~~v~fIvl~~g~~tkTk---dg~~v~~~kVaD~TgsI~isvW~e~~----~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 12 PGLKN--INVTFIVLEYGRATKTK---DGHEVRSCKVADETGSINISVWDEEG----CLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhhc--ceEEEEEEeeceeeecc---CCCEEEEEEEecccceEEEEEecCcC----cccCCccEEEecccchhhhcC
Confidence 67764 56667777777554332 234555444 4778888875433 579999999999988776654
No 137
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=42.20 E-value=1.7e+02 Score=23.08 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=46.8
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEE---ecCCCCEEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQM---NVGDEPATIF 170 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~---N~g~~~a~~l 170 (221)
|+++.|.+-+. ...+.-+. .-+.+|++|+=++.++ ++ .+...+|+.++.+.+++-... ...++|...+
T Consensus 5 gl~i~r~~~~~-~~~~~~y~---p~i~~vlQG~K~~~~g---~~--~~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~l~l 75 (155)
T PF06719_consen 5 GLSIFRSSRPT-PPMPCVYE---PSICIVLQGSKRVHLG---DQ--VFEYDAGQYLVSSVDLPVESEVVEASPEEPYLAL 75 (155)
T ss_pred CEEEEEECCCC-CCcceecC---CeEEEEEeeeEEEEEC---Cc--eEEecCCcEEEecCCCcEEEEEeeccCCCCEEEE
Confidence 45566643332 22222233 4689999999999886 34 388999999999999876543 3456676666
Q ss_pred EE
Q 048761 171 GS 172 (221)
Q Consensus 171 ~v 172 (221)
.+
T Consensus 76 ~l 77 (155)
T PF06719_consen 76 SL 77 (155)
T ss_pred EE
Confidence 54
No 138
>COG1741 Pirin-related protein [General function prediction only]
Probab=41.87 E-value=2.5e+02 Score=24.89 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=28.9
Q ss_pred CCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEE
Q 048761 87 FPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSG 130 (221)
Q Consensus 87 ~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~ 130 (221)
.|--... +....+.+++|+..+.+ -....-++||++|++++.
T Consensus 166 ~pv~~~~-~~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v~ 207 (276)
T COG1741 166 SPVRQDS-LHYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEVN 207 (276)
T ss_pred cccccce-eEEEEEEeCCCceEecC-CCCceEEEEEEEeEEEEc
Confidence 3433333 67788888888887666 222356899999988764
No 139
>TIGR00022 uncharacterized protein, YhcH/YjgK/YiaL family. This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK.
Probab=41.81 E-value=1.3e+02 Score=23.46 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=19.1
Q ss_pred CCCccCCCCcEEEEEEeCcEEEEEE
Q 048761 108 NPPHFHPRATEIAYVVQGSVYSGFV 132 (221)
Q Consensus 108 ~ppH~Hp~a~E~~yVl~G~~~v~~~ 132 (221)
..+-.|.+--.+-|+++|+=++++.
T Consensus 61 ~~~E~Hr~YiDIq~~l~G~E~i~~~ 85 (142)
T TIGR00022 61 KKAELHHRYLDIQLLLRGEENIEVG 85 (142)
T ss_pred cchhhhhheEEEEEeecceEEEEEe
Confidence 3455566678899999999888875
No 140
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.13 E-value=40 Score=33.96 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=35.9
Q ss_pred EEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEE
Q 048761 100 ADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVM 149 (221)
Q Consensus 100 v~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~ 149 (221)
.-+.||..+-.+=.+ -+|+++|++|.+++.-.+.++......|++||.+
T Consensus 445 ~~f~pge~iireGd~-v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~ 493 (727)
T KOG0498|consen 445 EYFTPGEYIIREGDP-VTDMYFIVRGSLESITTDGGGFFVVAILGPGDFF 493 (727)
T ss_pred hccCCCCeEEecCCc-cceeEEEEeeeEEEEEccCCceEEEEEecCCCcc
Confidence 455666666556566 6899999999998766543344456899999997
No 141
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=40.95 E-value=56 Score=33.08 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=34.7
Q ss_pred EEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEE
Q 048761 96 SFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVM 149 (221)
Q Consensus 96 s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~ 149 (221)
.+....++||..+-..=.+ ++++++|++|++.+.....+++.....+++||+|
T Consensus 396 ~~~~~~~~pge~I~~qge~-~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~F 448 (823)
T PLN03192 396 KMKAEYIPPREDVIMQNEA-PDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIF 448 (823)
T ss_pred hhheeeeCCCCEEEECCCC-CceEEEEEecEEEEEEecCCcceeeEEccCCCEe
Confidence 3445568888755332233 5789999999999864322233345689999987
No 142
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=40.80 E-value=60 Score=21.70 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=20.3
Q ss_pred EEEEEeCCCceEEEEecCCcEEEEcCCCeE
Q 048761 128 YSGFVDSSSRVFARVIKQGEVMVFPRGLMH 157 (221)
Q Consensus 128 ~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H 157 (221)
+|++.|+.++.++..|++|..+.--+|.++
T Consensus 11 rVQlTD~Kgr~~Ti~L~~G~~fhThrG~i~ 40 (54)
T PF14801_consen 11 RVQLTDPKGRKHTITLEPGGEFHTHRGAIR 40 (54)
T ss_dssp EEEEEETT--EEEEE--TT-EEEETTEEEE
T ss_pred EEEEccCCCCeeeEEECCCCeEEcCccccc
Confidence 467778778888999999999988888654
No 143
>PLN02288 mannose-6-phosphate isomerase
Probab=40.12 E-value=21 Score=33.27 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=18.7
Q ss_pred EEecCCcEEEEcCCCeEEEE
Q 048761 141 RVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 141 ~~L~~GDv~~~P~G~~H~~~ 160 (221)
..|++||.+++|+|.+|...
T Consensus 253 v~L~PGeaifl~ag~~HAYl 272 (394)
T PLN02288 253 VKLNPGEALYLGANEPHAYL 272 (394)
T ss_pred EecCCCCEEEecCCCCceec
Confidence 79999999999999999875
No 144
>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms. Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....
Probab=37.86 E-value=40 Score=21.00 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=21.9
Q ss_pred chhcCCCCHHHHHHHhCCCHHHHHHhhhc
Q 048761 186 AIFGSGIDVELLEKAFGLSPKQIGTMRRR 214 (221)
Q Consensus 186 ~lf~~~~p~evla~af~~~~~~v~~l~~~ 214 (221)
.|+..+++..-+|+.||++..+|-++++.
T Consensus 16 ~l~~~G~si~~IA~~~gvsr~TvyR~l~~ 44 (45)
T PF02796_consen 16 ELYAEGMSIAEIAKQFGVSRSTVYRYLNK 44 (45)
T ss_dssp HHHHTT--HHHHHHHTTS-HHHHHHHHCC
T ss_pred HHHHCCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 46666899999999999999999998753
No 145
>COG2731 EbgC Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
Probab=37.34 E-value=1.8e+02 Score=23.55 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=38.4
Q ss_pred CCccCCCCcEEEEEEeCcEEEEEEeCCC--------------------ceEEEEecCCcEEEEcCCCeEEEEe
Q 048761 109 PPHFHPRATEIAYVVQGSVYSGFVDSSS--------------------RVFARVIKQGEVMVFPRGLMHFQMN 161 (221)
Q Consensus 109 ppH~Hp~a~E~~yVl~G~~~v~~~~~~~--------------------k~~~~~L~~GDv~~~P~G~~H~~~N 161 (221)
-+-.|-+--++-++++|+=.+++....+ .....+|++|+..+|=+|.+|.-.-
T Consensus 62 ~~E~HrkYiDiqill~G~E~i~~s~~~~~~~~e~y~~e~Di~~~~~~~~e~~v~L~~G~faiFfP~e~H~P~c 134 (154)
T COG2731 62 KFELHRKYIDIQILLKGQEGIEYSPKETAQVKEDYDEEKDIIFYKGIEDESTVELNPGMFAIFFPGEPHRPGC 134 (154)
T ss_pred chhhhhheEEEEEEEeceeeeEEccCcCCccccccccccCEEeecCCccceEEEeCCCCEEEECCCCcccccc
Confidence 3445555789999999987777664322 0124789999999999999998643
No 146
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=35.81 E-value=2e+02 Score=26.46 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=62.3
Q ss_pred CCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCce-EEEEecCCcEE--E
Q 048761 74 DTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQGEVM--V 150 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~GDv~--~ 150 (221)
..|..+..++... ++.-..+.|+.++...+...+...++..+-.+++..-++.+..++|+. -...|++||-+ +
T Consensus 250 ~sG~eVlvVd~~G----~tR~~~VGRvKIE~RPL~lIeAe~~g~~~~viLQnaetIrlv~~dG~~vsVt~Lk~GD~VL~~ 325 (344)
T PRK02290 250 RSGDEVLVVDADG----NTREAIVGRVKIEKRPLLLIEAEYGGKRIRTILQNAETIRLVTPDGKPVSVVDLKPGDEVLGY 325 (344)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeeccEEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 5677877776433 233578889999988877666555678999999999999999988873 45899999985 4
Q ss_pred EcCCCeEEEEe
Q 048761 151 FPRGLMHFQMN 161 (221)
Q Consensus 151 ~P~G~~H~~~N 161 (221)
++.+--|+-..
T Consensus 326 ~~~~~RHfG~~ 336 (344)
T PRK02290 326 LEEAARHFGMA 336 (344)
T ss_pred ecCCcccccce
Confidence 55566666543
No 147
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=34.75 E-value=69 Score=25.17 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=20.7
Q ss_pred EEEEecCCcEEEEcCCCeEEEE-ecCCC
Q 048761 139 FARVIKQGEVMVFPRGLMHFQM-NVGDE 165 (221)
Q Consensus 139 ~~~~L~~GDv~~~P~G~~H~~~-N~g~~ 165 (221)
....+++||++++...++|.-. |.++.
T Consensus 180 ~~~~~~~Gdvl~~~~~~~H~s~~N~s~~ 207 (211)
T PF05721_consen 180 VPVPMKAGDVLFFHSRLIHGSGPNTSDD 207 (211)
T ss_dssp EEE-BSTTEEEEEETTSEEEEE-B-SSS
T ss_pred EEeecCCCeEEEEcCCccccCCCCCCcC
Confidence 4577999999999999999964 55544
No 148
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=33.98 E-value=74 Score=30.69 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=26.2
Q ss_pred CcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEE
Q 048761 116 ATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVM 149 (221)
Q Consensus 116 a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~ 149 (221)
+.|+++|.+|.+.+- +++|+..-.+|++|++|
T Consensus 348 gkEMyIVk~G~L~Vv--~dDg~t~~~~L~~G~~F 379 (536)
T KOG0500|consen 348 GKEMYIVKEGKLAVV--ADDGVTVFVTLKAGSVF 379 (536)
T ss_pred cceEEEEEccEEEEE--ecCCcEEEEEecCCcee
Confidence 789999999999864 44576667899999987
No 149
>PHA00672 hypothetical protein
Probab=31.62 E-value=2.6e+02 Score=22.14 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=51.4
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCCCCEEE
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGDEPATI 169 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~~~a~~ 169 (221)
|+-...+.++.|....--.|- -|-+++.+|.++|..+ +.. +.|+.=-++.-|+|.-...+...|+....
T Consensus 46 GvYARei~IPkGt~LtG~~hk--f~~~ii~sG~itV~td---ge~--~rl~g~~~i~~~aG~KragyAHeDT~wt~ 114 (152)
T PHA00672 46 GVYARTIRIPAGVALTGALIK--VSTVLIFSGHATVFIG---GEA--VELRGYHVIPASAGRKQAFVAHADTDLTM 114 (152)
T ss_pred ceeEEEEeccCceeeeeeeeE--eeEEEEecccEEEEeC---CcE--EEEecceeeecCCCcccceeeeccceEEE
Confidence 778888999999877655663 4556999999998765 453 78888888888888877776665554433
No 150
>PF04074 DUF386: Domain of unknown function (DUF386); InterPro: IPR004375 This family consists of conserved hypothetical proteins, about 150 amino acids in length, with no known function. The family is restricted to the bacteria. It includes three members in Escherichia coli (strain K12) and three in Streptococcus pneumoniae.; PDB: 1S4C_B 1JOP_B.
Probab=31.40 E-value=2.6e+02 Score=21.98 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=36.1
Q ss_pred ceEEEEEEecCCC--cCCCccCCCCcEEEEEEeCcEEEEEE-eCCC--------------------ceEEEEecCCcEEE
Q 048761 94 GMSFVRADLRVGA--INPPHFHPRATEIAYVVQGSVYSGFV-DSSS--------------------RVFARVIKQGEVMV 150 (221)
Q Consensus 94 g~s~~rv~l~pgg--~~ppH~Hp~a~E~~yVl~G~~~v~~~-~~~~--------------------k~~~~~L~~GDv~~ 150 (221)
++.+...+..... ...+-.|-+--.+-|+++|+=++++. ...+ ......|++|+.++
T Consensus 45 ~~~~~v~~~~t~~~~~~~~E~HrkyiDiq~~l~G~E~i~~~~~~~~~~~~~~yd~~~D~~f~~~~~~~~~i~l~~g~f~i 124 (153)
T PF04074_consen 45 DLFANVQEYETKPEEERRFESHRKYIDIQYVLEGEERIGWSADIEDLEVVQPYDEEKDIAFYEDGKNESFITLKPGDFAI 124 (153)
T ss_dssp S-EEEEE--B-B-GGGS-EEE-SSEEEEEEEEES-EEEEEE-S---GGGS---BTTTTBEEES--TTEEEEEE-TTEEEE
T ss_pred cEEEEeeccccccccccceeeeccEEEEEeeccccEEEEEEcCcccCcccccCCCCCCEEEecCCCCceEEEEcCCEEEE
Confidence 3444444444443 34556677778899999999888883 2111 00135799999999
Q ss_pred EcCCCeEEEE
Q 048761 151 FPRGLMHFQM 160 (221)
Q Consensus 151 ~P~G~~H~~~ 160 (221)
|-++-+|.-.
T Consensus 125 ffP~d~H~p~ 134 (153)
T PF04074_consen 125 FFPEDAHRPG 134 (153)
T ss_dssp E-TT--EEEE
T ss_pred ECCCcccccc
Confidence 9999999843
No 151
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=28.84 E-value=21 Score=36.35 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=37.0
Q ss_pred EecCCCcCCCccCCCCcEEEEEEeC---cEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEecCC
Q 048761 101 DLRVGAINPPHFHPRATEIAYVVQG---SVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVGD 164 (221)
Q Consensus 101 ~l~pgg~~ppH~Hp~a~E~~yVl~G---~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g~ 164 (221)
..+-|..+++-.||-.++-+|+-.+ ++.-+++- +..+..=.-||.++||+|.+|.++|.-.
T Consensus 761 ~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGV---e~WtfvQ~LGdAVfIPAGaPHQVrNLkS 824 (889)
T KOG1356|consen 761 CKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGV---EPWTFVQFLGDAVFIPAGAPHQVRNLKS 824 (889)
T ss_pred hHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCC---CccchhhcccceEEecCCCcHHhhhhhh
Confidence 3344455666668876776766544 11111110 1123455679999999999999999643
No 152
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=28.34 E-value=40 Score=22.67 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=17.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHhhhcC
Q 048761 191 GIDVELLEKAFGLSPKQIGTMRRRF 215 (221)
Q Consensus 191 ~~p~evla~af~~~~~~v~~l~~~~ 215 (221)
+-.+.-|.+.+|++++++++||+.+
T Consensus 43 Gs~e~Yl~~~lgl~~~~i~~Lr~~l 67 (68)
T PF13348_consen 43 GSVENYLREELGLSEEDIERLRERL 67 (68)
T ss_dssp SSHHHHHHHT-T--HHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHc
Confidence 3566778889999999999999764
No 153
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=26.97 E-value=80 Score=19.53 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=18.8
Q ss_pred CCCHHHHHHHhCCCHHHHHHhhhcCCC
Q 048761 191 GIDVELLEKAFGLSPKQIGTMRRRFDP 217 (221)
Q Consensus 191 ~~p~evla~af~~~~~~v~~l~~~~~~ 217 (221)
+.+..-+++.+|++..+|.+..+.+.-
T Consensus 17 G~s~~~ia~~lgvs~~Tv~~w~kr~~~ 43 (50)
T PF13384_consen 17 GWSIREIAKRLGVSRSTVYRWIKRYRE 43 (50)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHT----
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHccc
Confidence 688888999999999999999888753
No 154
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=26.88 E-value=86 Score=19.22 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=15.5
Q ss_pred CCCHHHHHHHhC-CCHHHHHHh
Q 048761 191 GIDVELLEKAFG-LSPKQIGTM 211 (221)
Q Consensus 191 ~~p~evla~af~-~~~~~v~~l 211 (221)
.+|+|++.+.|. ++.+++-++
T Consensus 3 ~LP~Eil~~If~~L~~~dl~~~ 24 (47)
T PF12937_consen 3 SLPDEILLEIFSYLDPRDLLRL 24 (47)
T ss_dssp CS-HHHHHHHHTTS-HHHHHHH
T ss_pred HhHHHHHHHHHhcCCHHHHHHH
Confidence 699999999998 677776654
No 155
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=26.36 E-value=1.9e+02 Score=24.84 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEecCCcEEEEcCCCeEEEEecC
Q 048761 140 ARVIKQGEVMVFPRGLMHFQMNVG 163 (221)
Q Consensus 140 ~~~L~~GDv~~~P~G~~H~~~N~g 163 (221)
...+++|++++||...+|...-..
T Consensus 142 ~Vkp~aG~~vlfps~~lH~v~pVt 165 (226)
T PRK05467 142 RVKLPAGDLVLYPSTSLHRVTPVT 165 (226)
T ss_pred EEecCCCeEEEECCCCceeeeecc
Confidence 578899999999999999987643
No 156
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=26.15 E-value=74 Score=25.32 Aligned_cols=25 Identities=0% Similarity=0.076 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHhhhc
Q 048761 190 SGIDVELLEKAFGLSPKQIGTMRRR 214 (221)
Q Consensus 190 ~~~p~evla~af~~~~~~v~~l~~~ 214 (221)
..++++-+|++|+++++.+++|++.
T Consensus 88 ~~~~~~eLA~Sf~is~el~~qL~~~ 112 (137)
T PRK14585 88 YQYTPQEYAESLAIPDELYQQLQKS 112 (137)
T ss_pred CCCChHHHHHHcCCCHHHHHHHhcC
Confidence 3688999999999999999999865
No 157
>PF13994 PgaD: PgaD-like protein
Probab=25.71 E-value=78 Score=24.77 Aligned_cols=23 Identities=39% Similarity=0.736 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHhhhc
Q 048761 192 IDVELLEKAFGLSPKQIGTMRRR 214 (221)
Q Consensus 192 ~p~evla~af~~~~~~v~~l~~~ 214 (221)
++++=+|+.|++++++++++++.
T Consensus 101 ~~~~elA~~f~l~~~~l~~lr~~ 123 (138)
T PF13994_consen 101 VSDEELARSFGLSPEQLQQLRQA 123 (138)
T ss_pred CCHHHHHHHcCCCHHHHHHHHhC
Confidence 78899999999999999999875
No 158
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=25.47 E-value=61 Score=25.06 Aligned_cols=26 Identities=15% Similarity=0.482 Sum_probs=20.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHhhhcCC
Q 048761 191 GIDVELLEKAFGLSPKQIGTMRRRFD 216 (221)
Q Consensus 191 ~~p~evla~af~~~~~~v~~l~~~~~ 216 (221)
|+++..+|+..++++++|+++++..+
T Consensus 72 GFsD~~IA~l~~~~e~~vr~~R~~~~ 97 (123)
T PF02787_consen 72 GFSDRQIARLWGVSEEEVRELRKEHG 97 (123)
T ss_dssp T--HHHHHHHHTS-HHHHHHHHHHHT
T ss_pred CCCHHHHHhccCCCHHHHHHHHHHcC
Confidence 79999999999999999999987643
No 159
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]
Probab=24.67 E-value=1.1e+02 Score=30.43 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=38.7
Q ss_pred ceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 048761 94 GMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMN 161 (221)
Q Consensus 94 g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N 161 (221)
.|.+.....+||-.. -|+-..-+.+.+|++|++++--. ++ ....|.+||+| |-..|-.|
T Consensus 568 Am~f~~~H~APGDLl-YHtGESvDaLcFvVsGSLEVIQD---DE-VVAILGKGDVF----GD~FWK~~ 626 (971)
T KOG0501|consen 568 AMEFQTNHCAPGDLL-YHTGESVDALCFVVSGSLEVIQD---DE-VVAILGKGDVF----GDEFWKEN 626 (971)
T ss_pred HHHHHhccCCCccee-eecCCccceEEEEEecceEEeec---Cc-EEEEeecCccc----hhHHhhhh
Confidence 344444455565443 45555556799999999998654 34 35889999997 55555554
No 160
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=24.21 E-value=68 Score=20.65 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHhhhc
Q 048761 190 SGIDVELLEKAFGLSPKQIGTMRRR 214 (221)
Q Consensus 190 ~~~p~evla~af~~~~~~v~~l~~~ 214 (221)
.+.+.+.||.-||++++++.++...
T Consensus 18 ~~~~~~~La~~FgIs~stvsri~~~ 42 (53)
T PF13613_consen 18 LNLTFQDLAYRFGISQSTVSRIFHE 42 (53)
T ss_pred cCCcHhHHhhheeecHHHHHHHHHH
Confidence 3788899999999999999987653
No 161
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=23.88 E-value=4e+02 Score=21.69 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=52.9
Q ss_pred eEEEEEEecCCCcCCCccCCCCcEEEEEEeC-cEEEEEEeCCCceEEE----EecCCcE--EEEcCCCeEE-EEecCCCC
Q 048761 95 MSFVRADLRVGAINPPHFHPRATEIAYVVQG-SVYSGFVDSSSRVFAR----VIKQGEV--MVFPRGLMHF-QMNVGDEP 166 (221)
Q Consensus 95 ~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G-~~~v~~~~~~~k~~~~----~L~~GDv--~~~P~G~~H~-~~N~g~~~ 166 (221)
.+..+.-++++.+..+|.-. +.|+++...| .+.+.+.. +|+..++ .+++|++ +++|+|.... ....|+.-
T Consensus 44 sT~IYyLLe~~~~s~~HRv~-a~eiwHf~ag~pl~~~l~~-dG~~~s~~LG~d~~~Ge~~Q~vVP~g~w~aS~~~~g~~~ 121 (162)
T COG3542 44 STAIYYLLEEDNISAWHRVT-ADEIWHFYAGAPLELHLSE-DGGAESFTLGPDLEKGERPQYVVPAGTWWASAVSLGEDY 121 (162)
T ss_pred eEEEEEEecCCccchheecc-hhheEEEecCCceEEEEEe-CCCeEEEEecccccCCceeEEEEeCCcEEEEEEecCCCc
Confidence 45556677888865555543 8999999988 47777776 5665444 4567877 6899995433 33444322
Q ss_pred EEEEEEEcCCCCCceecccch
Q 048761 167 ATIFGSFNSQNPGNQKIPSAI 187 (221)
Q Consensus 167 a~~l~v~ss~~pg~~~~~~~l 187 (221)
.++... --||+-.-...+
T Consensus 122 -tLVgCt--VaPGFdF~~Fel 139 (162)
T COG3542 122 -TLVGCT--VAPGFDFEDFEL 139 (162)
T ss_pred -eEEEEE--ecCCccchhccc
Confidence 222211 247775444444
No 162
>KOG2132 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=22.89 E-value=67 Score=29.42 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCC--ce-------------------------
Q 048761 86 VFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSS--RV------------------------- 138 (221)
Q Consensus 86 ~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~--k~------------------------- 138 (221)
.+|+.++.++.+...--+.|.+.|.|.-+. .-++.-+.|+.+..+.-+.. ..
T Consensus 241 ~~~~f~~~~v~~~~w~GpaGtV~pih~dp~-hNi~~qv~G~k~i~l~~p~~s~~lyP~d~~~~~tsqvdvenPdlk~fp~ 319 (355)
T KOG2132|consen 241 SFPNFENEVVDINAWIGPAGTVLPIHMDPW-HNILSQVFGRKRIRLYPPEDSGALYPTDTYLLETSQVDVENPDLKAFPK 319 (355)
T ss_pred ecCCCCccccceeEEeccCCceeccccccc-cceeeeeecceEEEEecCcccCCCCCccchhhcccccccCCCChhhhhH
Confidence 345555545666655556688888887774 67888888888877764321 00
Q ss_pred ------EEEEecCCcEEEEcCCCeEEEEec
Q 048761 139 ------FARVIKQGEVMVFPRGLMHFQMNV 162 (221)
Q Consensus 139 ------~~~~L~~GDv~~~P~G~~H~~~N~ 162 (221)
....|++||++++|+-..|+.+..
T Consensus 320 ~~k~~~l~~lL~pGe~L~iP~kwwhyvrs~ 349 (355)
T KOG2132|consen 320 FAKARFLDCLLEPGEALFIPPKWWHYVRSL 349 (355)
T ss_pred HHHHHHHHHhcCCchhccccHHHhhhhhhc
Confidence 025789999999999999987643
No 163
>COG3758 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.50 E-value=3.6e+02 Score=22.72 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=25.3
Q ss_pred CCCcEEEEEEeCc-EEEEEEeCCCceEEEEecCCcEEEEcCCC
Q 048761 114 PRATEIAYVVQGS-VYSGFVDSSSRVFARVIKQGEVMVFPRGL 155 (221)
Q Consensus 114 p~a~E~~yVl~G~-~~v~~~~~~~k~~~~~L~~GDv~~~P~G~ 155 (221)
|.-+-++-||+|. +.+... ++.+...+++.+-+.||..+
T Consensus 58 pGidR~lsvLeG~gm~L~~~---~~~~~~l~~~~qp~aF~gD~ 97 (193)
T COG3758 58 PGIDRILSVLEGGGMTLSSA---GRAPVVLLRPLQPFAFAGDV 97 (193)
T ss_pred CCcceEEEEEecCceEEecC---CCccceecCCCCcccccCCc
Confidence 3344578888887 554443 44445777888888887664
No 164
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=22.48 E-value=2.2e+02 Score=23.51 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=32.3
Q ss_pred EEEEEEeCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEE
Q 048761 118 EIAYVVQGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQM 160 (221)
Q Consensus 118 E~~yVl~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~ 160 (221)
-+..-++|++.+-+.. .|..+...|.+||-+++.++.+=.+.
T Consensus 131 ~~~~~l~G~G~v~l~~-~G~i~~i~L~~ge~~~Vd~~~lVA~~ 172 (215)
T PF01987_consen 131 LFMLKLSGRGTVFLSG-YGAIYEIDLAPGEEIIVDPGHLVAWS 172 (215)
T ss_dssp EEEEEEESSCEEEEEE-CCSEEEEEEE-EEEEEEEGGGEEEEE
T ss_pred cEEEEEEEEEEEEEEe-CCcEEEEEccCCceEEEcCCCEEEEC
Confidence 4556788999988875 47788899999999999998665554
No 165
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=21.83 E-value=1.1e+02 Score=26.62 Aligned_cols=38 Identities=26% Similarity=0.284 Sum_probs=27.9
Q ss_pred EEEecCCcEEEEcCCCeEEE-EecCC-CCEEEEEEEcCCC
Q 048761 140 ARVIKQGEVMVFPRGLMHFQ-MNVGD-EPATIFGSFNSQN 177 (221)
Q Consensus 140 ~~~L~~GDv~~~P~G~~H~~-~N~g~-~~a~~l~v~ss~~ 177 (221)
...+++||+++|-.-++|.- .|.++ ....++..|++.+
T Consensus 212 ~~~~~aGDvl~f~~~~~H~S~~N~s~~~R~~l~l~y~~~~ 251 (277)
T TIGR02408 212 TFTGKAGSAVWFDCNTMHGSGSNITPWPRSNVFMVFNSVE 251 (277)
T ss_pred eeccCCceEEEEccccccCCCCCCCCCcceeEEEEEecCC
Confidence 35689999999999999996 46544 4556666776543
No 166
>KOG1633 consensus F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains [Chromatin structure and dynamics]
Probab=21.61 E-value=98 Score=31.54 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=45.4
Q ss_pred EecCCCcCC-CccCCCCcEEEEEEeCcEEE----------------EEEeCCCceEEEEecCCcEEEEcCCCeEEEEecC
Q 048761 101 DLRVGAINP-PHFHPRATEIAYVVQGSVYS----------------GFVDSSSRVFARVIKQGEVMVFPRGLMHFQMNVG 163 (221)
Q Consensus 101 ~l~pgg~~p-pH~Hp~a~E~~yVl~G~~~v----------------~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N~g 163 (221)
-+++|+... -|.+. +.-++|.+.++..- -|++.-.+-+...|++|+.++||.|.+|...-..
T Consensus 142 hidfggtsvwyhil~-G~K~f~lI~pt~~nl~~ye~w~~s~~q~~~ffGd~VdkC~~~~l~~g~T~~iPsGwIhAV~Tp~ 220 (776)
T KOG1633|consen 142 HIDFGGTSVWYHILA-GEKTFYLIPPTCENLELYECWESSTPQDEIFFGDCVDKCYKCILKQGQTLFIPSGWIHAVLTPT 220 (776)
T ss_pred ccCCCCcchhhhhhc-cccceeeeCCcccchhhhhhhhhcccccccccCCccceeEEEEeccCceEecccceeEeeecCc
Confidence 345555543 46664 56666666654321 1111112334578999999999999999998766
Q ss_pred CCCEEEEEEEcCC
Q 048761 164 DEPATIFGSFNSQ 176 (221)
Q Consensus 164 ~~~a~~l~v~ss~ 176 (221)
+.-+...-.+.+.
T Consensus 221 d~l~fgGnflhsl 233 (776)
T KOG1633|consen 221 DCLVFGGNFLHSL 233 (776)
T ss_pred chheeccchhhhh
Confidence 6555444444443
No 167
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=21.56 E-value=2.8e+02 Score=25.61 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=62.0
Q ss_pred CCCeEEEEecCCCCCCccccceEEEEEEecCCCcCCCccCCCCcEEEEEEeCcEEEEEEeCCCce-EEEEecCCcEE--E
Q 048761 74 DTGLATIPVNPTVFPGINTLGMSFVRADLRVGAINPPHFHPRATEIAYVVQGSVYSGFVDSSSRV-FARVIKQGEVM--V 150 (221)
Q Consensus 74 ~~g~~v~~~~~~~~P~l~~~g~s~~rv~l~pgg~~ppH~Hp~a~E~~yVl~G~~~v~~~~~~~k~-~~~~L~~GDv~--~ 150 (221)
..|..|..+.... ++.-..+.|++++...+...+-..++.++-.+++..-++.+..++|+. -...|++||-+ +
T Consensus 260 ~sG~~VlvVd~~G----~tR~~~VGRvKIE~RPLllIeA~~~g~~~svilQnaetIRlv~p~G~~vsVt~Lk~GD~vL~~ 335 (354)
T PF01959_consen 260 RSGDEVLVVDADG----RTRTAIVGRVKIERRPLLLIEAEADGKRISVILQNAETIRLVGPDGEPVSVTELKPGDEVLVY 335 (354)
T ss_pred cCCCEEEEEeCCC----CEEEEEeeEEEEeecceEEEEEEeCCeEEEEEEecCcEEEEECCCCCEeeeeecCCCCEEEEE
Confidence 4577777765433 233578889999988776555444688999999999999999988773 34789999985 5
Q ss_pred EcCCCeEEEEec
Q 048761 151 FPRGLMHFQMNV 162 (221)
Q Consensus 151 ~P~G~~H~~~N~ 162 (221)
++.+--|+-...
T Consensus 336 ~~~~~RHfG~~I 347 (354)
T PF01959_consen 336 LEEAGRHFGMKI 347 (354)
T ss_pred ecCCCcccceEe
Confidence 566667765543
No 168
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=21.30 E-value=2.7e+02 Score=20.14 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=21.3
Q ss_pred eCcEEEEEEeCCCceEEEEecCCcEEEEcCCCeEEEEe
Q 048761 124 QGSVYSGFVDSSSRVFARVIKQGEVMVFPRGLMHFQMN 161 (221)
Q Consensus 124 ~G~~~v~~~~~~~k~~~~~L~~GDv~~~P~G~~H~~~N 161 (221)
=|.+... .+|+.....++.||.++||...--.+..
T Consensus 42 VG~G~~~---~~g~~~~~~vk~GD~Vl~~~~~g~~v~~ 76 (93)
T PF00166_consen 42 VGPGRYN---ENGEEVPMDVKVGDKVLFPKYAGTEVKF 76 (93)
T ss_dssp E-SEEET---TTSSEEETSS-TTSEEEEETTTSEEEEE
T ss_pred cCCcccc---CCCcEeeeeeeeccEEeccccCceEEEE
Confidence 3665544 3355445789999999999876444433
No 169
>PF15240 Pro-rich: Proline-rich
Probab=20.56 E-value=81 Score=26.25 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhccccCCC
Q 048761 5 LFVLFVIFILHGHGSRASDPD 25 (221)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~d~~ 25 (221)
|++|+...+|++++|-..|-|
T Consensus 2 LlVLLSvALLALSSAQ~~dEd 22 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDED 22 (179)
T ss_pred hhHHHHHHHHHhhhccccccc
Confidence 344443333334444455544
No 170
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=20.39 E-value=1.1e+02 Score=24.73 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=21.9
Q ss_pred CCCHHHHHHHhCCCHHHHHHhhhc
Q 048761 191 GIDVELLEKAFGLSPKQIGTMRRR 214 (221)
Q Consensus 191 ~~p~evla~af~~~~~~v~~l~~~ 214 (221)
.+++|=+|+.|+++++.++++++.
T Consensus 98 ~l~~dElA~sF~l~~e~i~qLr~~ 121 (153)
T PRK14584 98 DLDDDELASSFALSPELIAQLKSG 121 (153)
T ss_pred CCChHHHHHHcCCCHHHHHHHHhC
Confidence 688999999999999999999875
No 171
>PF01238 PMI_typeI: Phosphomannose isomerase type I; InterPro: IPR001250 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. Type I includes eukaryotic PMI and the enzyme encoded by the manA gene in enterobacteria. PMI has a bound zinc ion, which is essential for activity. A crystal structure of PMI from Candida albicans shows that the enzyme has three distinct domains []. The active site lies in the central domain, contains a single essential zinc atom, and forms a deep, open cavity of suitable dimensions to contain M6P or F6P The central domain is flanked by a helical domain on one side and a jelly-roll like domain on the other.; GO: 0004476 mannose-6-phosphate isomerase activity, 0008270 zinc ion binding, 0005975 carbohydrate metabolic process; PDB: 1PMI_A 1QWR_B 1ZX5_A 3H1Y_A 2WFP_A 3H1M_A 3H1W_A.
Probab=20.24 E-value=69 Score=29.46 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.0
Q ss_pred EEecCCcEEEEcCCCeEEEEe
Q 048761 141 RVIKQGEVMVFPRGLMHFQMN 161 (221)
Q Consensus 141 ~~L~~GDv~~~P~G~~H~~~N 161 (221)
..|++|+.+++|+|.+|....
T Consensus 252 v~L~pGeaifl~a~~~HAYl~ 272 (373)
T PF01238_consen 252 VELQPGEAIFLPAGEPHAYLS 272 (373)
T ss_dssp EEE-TT-EEEEHTTHHEEEEE
T ss_pred EEecCCceEEecCCCcccccc
Confidence 689999999999999998753
Done!