BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048764
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 201 bits (512), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 165/284 (58%), Gaps = 20/284 (7%)
Query: 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCS--NSATDPSLKDSALRHGFR 87
L C+K D+ A+ LY+ A +LS +H+N LLY+CS +AT+ S + L GF
Sbjct: 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS-PNPGLSRGFD 91
Query: 88 VFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147
+F QM+ + V+PNEA T+ ARLA +K D + AF+++K+M F + PRLR+Y PALF F
Sbjct: 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGF 150
Query: 148 CENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194
C +A KAYE E E+ ALLKVS T +KVY+ LQ+LR VR V++
Sbjct: 151 CRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSK 210
Query: 195 ETGKIIEDWFSGQ---KVNGVSCDLGLVKNAVLKNXXXXXXXXXXXXXKWVVKRGSVDES 251
T +IE+WF + K D+ +++AV+ KW VKR +DE+
Sbjct: 211 STFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDEN 270
Query: 252 GKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSESQ 295
G C C +L C+DI+ ETE FA S+ LA E+EVKANF++ Q
Sbjct: 271 GVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQ 314
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 160/284 (56%), Gaps = 20/284 (7%)
Query: 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCS--NSATDPSLKDSALRHGFR 87
L C+K D+ A+ LY+ A +LS +H+N LLY+CS +AT+ S + L GF
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESS-PNPGLSRGFD 91
Query: 88 VFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147
+F Q + + V+PNEA T+ ARLA +K D + AF+ +K+ F + PRLR+Y PALF F
Sbjct: 92 IFKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXK-AFGIQPRLRSYGPALFGF 150
Query: 148 CENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194
C +A KAYE E E+ ALLKVS T +KVY+ LQ+LR VR V++
Sbjct: 151 CRKGDADKAYEVDAHXVESEVVPEEPELAALLKVSXDTKNADKVYKTLQRLRDLVRQVSK 210
Query: 195 ETGKIIEDWFSGQ---KVNGVSCDLGLVKNAVLKNXXXXXXXXXXXXXKWVVKRGSVDES 251
T IE+WF + K D+ +++AV+ KW VKR DE+
Sbjct: 211 STFDXIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEXDEN 270
Query: 252 GKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSESQ 295
G C C +L C+DI+ ETE FA S+ LA E+EVKANF++ Q
Sbjct: 271 GVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQ 314
>pdb|2E1N|A Chain A, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
pdb|2E1N|B Chain B, Crystal Structure Of The Cyanobacterium Circadian Clock
Modifier Pex
Length = 138
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 110 LAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVS 169
LA + + Y ELI+ + + P R D L+ + LE +EQ I+ K
Sbjct: 40 LAVLRHEDSYGTELIQHLETHW---PNYRLSDTVLYTALKFLE-----DEQIISGYWKKV 91
Query: 170 AGTGRVEKVYQYLQ 183
G GR ++YQ Q
Sbjct: 92 EGRGRPRRMYQLAQ 105
>pdb|2ZFW|A Chain A, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|B Chain B, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|D Chain D, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
pdb|2ZFW|E Chain E, Crystal Structure Of Pex From Synechococcus Sp. (Strain
Pcc 7942) (Anacystis Nidulans R2)
Length = 148
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 110 LAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVS 169
LA + + Y ELI+ + + P R D L+ + LE +EQ I+ K
Sbjct: 50 LAVLRHEDSYGTELIQHLETHW---PNYRLSDTVLYTALKFLE-----DEQIISGYWKKV 101
Query: 170 AGTGRVEKVYQYLQ 183
G GR ++YQ Q
Sbjct: 102 EGRGRPRRMYQLAQ 115
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6F|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
Length = 455
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV 134
+ M++ N +P + + +L K+D D FEL KR + F ++
Sbjct: 244 EDMIAENALPAKTKTAGLRKL--KKEDIDQVFELFKRYQSRFELI 286
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
Length = 422
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV 134
+ M++ N +P + + +L K+D D FEL KR + F ++
Sbjct: 211 EDMIAENALPAKTKTAGLRKL--KKEDIDQVFELFKRYQSRFELI 253
>pdb|1VPY|A Chain A, Crystal Structure Of A Duf72 Family Protein (ef0366) From
Enterococcus Faecalis V583 At 2.52 A Resolution
Length = 289
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 156 AYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKI--IEDWF 204
A EE+ ITA L+ A +K++ +L + T C E + I WF
Sbjct: 92 ASEEEXITAFLESXAPLIESKKLFAFLVQFSGTFGCTKENVAYLQKIRHWF 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,984,445
Number of Sequences: 62578
Number of extensions: 242759
Number of successful extensions: 694
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 684
Number of HSP's gapped (non-prelim): 9
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)