BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048764
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1
Length = 576
Score = 315 bits (807), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/300 (53%), Positives = 210/300 (70%), Gaps = 27/300 (9%)
Query: 23 ETNFLISLQSCTKSKDLATAISLYESAL-SLNFRLSLHHFNALLYLCSNSATDPSLKDSA 81
E + LI+L SC+K KDL+ A++LY++A+ S + RL+ HF +LLYLCS +DPSL+ A
Sbjct: 89 EKSLLINLHSCSKRKDLSAALALYDAAITSSDIRLNQQHFQSLLYLCSAFISDPSLQTVA 148
Query: 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTY 140
+ GF++FD+M+S+ + PNE+ VT+VARLAA+K D DYAF+L+K + V VPRLRTY
Sbjct: 149 IDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRTY 208
Query: 141 DPALFCFCENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187
PAL CFC+ LEA+K YE E EI+ALLKVSA TGR KVY+YLQKLR
Sbjct: 209 APALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLRE 268
Query: 188 TVRCVNEETGKIIEDWFSGQKV-----NGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV 242
V CV+EET K IE+WF G K NG+ D+ L++ AVLKNGGGWHGLGW+G+GKW+
Sbjct: 269 CVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKWI 328
Query: 243 VKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVK-------ANFSESQ 295
VK+G+V +GKC SC LACVD ++ ETE F S+ LAME++ K A+FSE Q
Sbjct: 329 VKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEFQ 388
>sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1
Length = 528
Score = 303 bits (775), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 167/305 (54%), Positives = 218/305 (71%), Gaps = 20/305 (6%)
Query: 10 SKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESAL-SLNFRLSLHHFNALLYLC 68
S+PNKK+K + NPETN L +L SC+KSKDL+ A++LY++A+ S RLS HF LLYLC
Sbjct: 17 SRPNKKKKVSRNPETNLLFNLNSCSKSKDLSAALALYDAAITSSEVRLSQQHFQTLLYLC 76
Query: 69 SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128
S S TD SL+ A+ GF +FD+M+S+ + PNEA VTSVARLAA+K + DYAF+++K
Sbjct: 77 SASITDISLQYLAIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFV 136
Query: 129 NEFNV-VPRLRTYDPALFCFCENLEAQKAY-------------EEQEITALLKVSAGTGR 174
+ V +PRLRTY PAL CFCE LEA+K Y EE EI+ALLKVSA TGR
Sbjct: 137 SVGGVSIPRLRTYAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGR 196
Query: 175 VEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKV-----NGVSCDLGLVKNAVLKNGGG 229
KVY+YL KLR V CV+EET KIIE+WF G+K NG+ D+G+++ AVL NGGG
Sbjct: 197 ENKVYRYLHKLREYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGG 256
Query: 230 WHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKA 289
WHG GW+G+GKW VK+G+V +G+C SC QLACVD ++ ET++F S+ ALAM+++ K
Sbjct: 257 WHGHGWVGEGKWTVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKM 316
Query: 290 NFSES 294
N E+
Sbjct: 317 NSCET 321
>sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=PRORP1 PE=1 SV=1
Length = 572
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 134/310 (43%), Positives = 187/310 (60%), Gaps = 20/310 (6%)
Query: 4 TTSANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNA 63
+ S N S+ KK+ +PE L C+K D+ A+ LY+ A +LS +H+N
Sbjct: 78 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNV 137
Query: 64 LLYLCS--NSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAF 121
LLY+CS +AT+ S + L GF +F QM+ + V+PNEA T+ ARLA +K D + AF
Sbjct: 138 LLYVCSLAEAATESS-PNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAF 196
Query: 122 ELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------------EQEITALLKV 168
+++K+M F + PRLR+Y PALF FC +A KAYE E E+ ALLKV
Sbjct: 197 DMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 255
Query: 169 SAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQ---KVNGVSCDLGLVKNAVLK 225
S T +KVY+ LQ+LR VR V++ T +IE+WF + K D+ +++AV+
Sbjct: 256 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVS 315
Query: 226 NGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQ 285
GGGWHG GW+G GKW VKR +DE+G C C +L C+DI+ ETE FA S+ LA E+
Sbjct: 316 GGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACER 375
Query: 286 EVKANFSESQ 295
EVKANF++ Q
Sbjct: 376 EVKANFNQFQ 385
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSA 81
+ ++ +Q+C D + ++LY+ ++ H F+ ++ LC K+
Sbjct: 292 KITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLC---------KEGK 342
Query: 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD 141
L G+ VF+ M+ PN A+ T + A + A L+ RM +E P + TY
Sbjct: 343 LNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDE-GFKPDVVTYS 401
Query: 142 PALFCFCENLEAQKAYE 158
+ C+N ++A +
Sbjct: 402 VVVNGLCKNGRVEEALD 418
>sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010,
mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2
SV=2
Length = 572
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 59/151 (39%), Gaps = 15/151 (9%)
Query: 70 NSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN 129
NS P K +VFD+ML + P + R+ + ++ FEL+ +M
Sbjct: 377 NSLIKPLCKARKTEEAKQVFDEMLEKGLFPTIRTYHAFMRILRTGEE---VFELLAKMRK 433
Query: 130 E------------FNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEK 177
+ R R +D L + E E + ++ G++E+
Sbjct: 434 MGCEPTVETYIMLIRKLCRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEE 493
Query: 178 VYQYLQKLRSTVRCVNEETGKIIEDWFSGQK 208
Y Y ++++ NE +I+ WFSG++
Sbjct: 494 AYGYYKEMKDKGMRPNENVEDMIQSWFSGKQ 524
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 13/129 (10%)
Query: 13 NKKRKTNPNP-ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS 71
+K RK+ +P + F L +CT S L S++ L + + LH SNS
Sbjct: 210 SKMRKSTSDPNDYTFTALLSACTGSGALGQGRSVHCQTLHMGLKSYLH--------ISNS 261
Query: 72 ATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF 131
K L+ FR+FDQ + +V+ +++ A+ + + A EL + M +
Sbjct: 262 LISMYCKCGDLKDAFRIFDQFSNKDVVSWNSMIAGYAQHGLAMQ----AIELFELMMPKS 317
Query: 132 NVVPRLRTY 140
P TY
Sbjct: 318 GTKPDAITY 326
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 39.7 bits (91), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 16 RKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDP 75
+K P T + C+K K + A+ LY S++ F LL
Sbjct: 466 KKLEPTVVTYTSLMGGYCSKGK-INKALRLYHEMTGKGIAPSIYTFTTLL--------SG 516
Query: 76 SLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135
+ +R ++F++M NV PN + + D AFE +K M E +VP
Sbjct: 517 LFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEM-TEKGIVP 575
Query: 136 RLRTYDPALFCFCENLEAQKA 156
+Y P + C +A +A
Sbjct: 576 DTYSYRPLIHGLCLTGQASEA 596
Score = 33.1 bits (74), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL 144
G + D+ML P+EA V+S+ + + A L+KR+ +F V P L Y+ +
Sbjct: 316 GLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRV-VDFGVSPNLFVYNALI 374
Query: 145 FCFCENLEAQKA 156
C+ + +A
Sbjct: 375 DSLCKGRKFHEA 386
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 14 KKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT 73
K+ +PN T F + K+ DL A+SLY+ + L++ + AL+
Sbjct: 190 KRDALSPNVVT-FTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALI-------- 240
Query: 74 DPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNE 130
D K ++ ++ +M+ + V PN + T++ + DSD A + + +M N+
Sbjct: 241 DGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQ 297
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 11 KPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSN 70
K +K + P T F+ + KS D+ ++ +++ ++H FN L+ N
Sbjct: 578 KEMQKLRHRPTTRT-FMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLI----N 632
Query: 71 SATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNE 130
+ + A+ + D+M V NE T + + AS D+ AFE R+ NE
Sbjct: 633 GLVEKRQMEKAVE----ILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNE 688
Query: 131 FNVVPRLRTYDPALFCFCENLEAQKA 156
+ + TY+ L C++ Q A
Sbjct: 689 -GLDVDIFTYEALLKACCKSGRMQSA 713
>sp|Q9LUJ4|PP248_ARATH Pentatricopeptide repeat-containing protein At3g22670,
mitochondrial OS=Arabidopsis thaliana GN=At3g22670 PE=2
SV=1
Length = 562
Score = 37.0 bits (84), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 11/128 (8%)
Query: 19 NPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLK 78
NPN T + I + S KSK +A A+ +YE +++L+++ S + K
Sbjct: 340 NPNVVT-YTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTG---RFK 395
Query: 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNE--FNVVPR 136
D+A +F+ M + V + + ++ A + A L+KRM +E + P
Sbjct: 396 DAA-----EIFEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPN 450
Query: 137 LRTYDPAL 144
+ TY P L
Sbjct: 451 VETYAPLL 458
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD 141
++ F F +ML + PNE + R S D+D + +L +M E + P L Y+
Sbjct: 511 IKDAFDCFKEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKM-KENGLSPDLYAYN 569
Query: 142 PALFCFCENLEAQKAYEEQEITALLKV 168
+ FC+ + +KA E+ + +L++
Sbjct: 570 ATIQSFCKMRKVKKA--EELLKTMLRI 594
>sp|Q9SZ10|PP338_ARATH Pentatricopeptide repeat-containing protein At4g26680,
mitochondrial OS=Arabidopsis thaliana GN=At4g26680 PE=2
SV=1
Length = 521
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 68/168 (40%), Gaps = 31/168 (18%)
Query: 17 KTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY---------- 66
K +PNP T ++ C +S L I L + L FR + +N L+
Sbjct: 233 KISPNPYTLNMVMSGYC-RSGKLDKGIELLQDMERLGFRATDVSYNTLIAGHCEKGLLSS 291
Query: 67 ------LCSNSATDPSLKD-SALRHGF----------RVFDQMLSNNVIPNEALVTSVAR 109
+ S P++ + L HGF +VF +M + NV PN ++
Sbjct: 292 ALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLIN 351
Query: 110 LAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKA 156
+ + D + AF + M N + R + TY+ +F C+ + +KA
Sbjct: 352 GYSQQGDHEMAFRFYEDM--VCNGIQRDILTYNALIFGLCKQAKTRKA 397
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSL 77
PN T N LI+ ++ D A YE + + + +NAL++ LC + T
Sbjct: 341 PNTVTYNTLIN--GYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKT---- 394
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137
R + ++ N++PN + +++ +K++D FEL K M P
Sbjct: 395 -----RKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFELYKSMIRS-GCHPNE 448
Query: 138 RTYDPALFCFCEN 150
+T++ + FC N
Sbjct: 449 QTFNMLVSAFCRN 461
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 35.0 bits (79), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 12/139 (8%)
Query: 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALL-YLCSNSATDPSLK 78
P+ +T + I ++ + +D + A +++ L N + L +NALL LC + D
Sbjct: 206 PSAKT-YSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDG--- 261
Query: 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138
G+++F +M + + P+ D A++++ RM +++VP +
Sbjct: 262 ------GYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMK-RYDLVPNVY 314
Query: 139 TYDPALFCFCENLEAQKAY 157
T++ + C+N + AY
Sbjct: 315 TFNHIIKTLCKNEKVDDAY 333
>sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080,
chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2
SV=1
Length = 576
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 38 DLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96
+L+ + S ES ++ + ++ H LLY LC K + L+ RV + M+S+
Sbjct: 86 NLSDSFSHLESLVTGGHKPNVAHSTQLLYDLC---------KANRLKKAIRVIELMVSSG 136
Query: 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNE 130
+IP+ + T + + + YA +L+++M +
Sbjct: 137 IIPDASAYTYLVNQLCKRGNVGYAMQLVEKMEDH 170
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 34.7 bits (78), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 70 NSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN 129
S D +K S + G +VFD+M NV+ L++ AR + +D L RM N
Sbjct: 132 TSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSM----NDEVLTLFMRMQN 187
Query: 130 EFNVVPRLRTYDPALFCFCE 149
E P T+ AL E
Sbjct: 188 E-GTQPNSFTFAAALGVLAE 206
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 68/190 (35%), Gaps = 37/190 (19%)
Query: 6 SANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALL 65
S +P K K+ NP F + S T+ A + +Y L RLS
Sbjct: 7 SLSPKHVLKLLKSEKNPRAAFAL-FDSATRHPGYAHSAVVYHHILR---RLS-------- 54
Query: 66 YLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIK 125
+ + H R+ + + S +E + SV + D A ++ K
Sbjct: 55 ------------ETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFK 102
Query: 126 RMNNEFNVVPRLRTYDPALFCFCE-----NLEAQKAYEE--------QEITALLKVSAGT 172
RM F P +R+Y+ L F E +E+ AY E Q L+K+S
Sbjct: 103 RMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKK 162
Query: 173 GRVEKVYQYL 182
EK +L
Sbjct: 163 KEFEKARGFL 172
>sp|Q0WLC6|PP349_ARATH Pentatricopeptide repeat-containing protein At4g34830,
chloroplastic OS=Arabidopsis thaliana
GN=At4g34830/At4g34820 PE=2 SV=2
Length = 1089
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 59/158 (37%), Gaps = 32/158 (20%)
Query: 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89
+ SC KS + ++ + +LH F AL+ C+ + + F +
Sbjct: 509 ISSCAKSGKVDAMFEVFHQMSNSGVEANLHTFGALIDGCARAGQ--------VAKAFGAY 560
Query: 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149
+ S NV P+ + ++ D AF+++ M E + + DP
Sbjct: 561 GILRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI------DP------- 607
Query: 150 NLEAQKAYEEQEITALLKVSAGTGRVEK---VYQYLQK 184
+ I AL+K G+VE+ VYQ + K
Sbjct: 608 --------DHISIGALMKACCNAGQVERAKEVYQMIHK 637
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRV 88
+ +C +KD A+ LYE S+ R ++ NAL+ LC + + L
Sbjct: 721 MGACCNAKDWKKALELYEKIKSIKLRPTISTMNALITALC---------EGNQLPKAMEY 771
Query: 89 FDQMLSNNVIPNEALVTSVARLAASKKDS-DYAFELIKRMNNEFNVVPRLRTYDPALFCF 147
D++ + + PN + S+ LA+ +KD + +F+L+ + + V P L + C
Sbjct: 772 LDEIKTLGLKPN-TITYSMLMLASERKDDFEVSFKLLSQAKGD-GVSPNL------IMCR 823
Query: 148 CENLEAQKAYEE 159
C ++ +E+
Sbjct: 824 CITSLCKRRFEK 835
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 6 SANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALL 65
+A K ++R P+ T + I + + +S ++ AI L S L +H ++ L+
Sbjct: 392 AAKMVKEMEERGIKPSKVT-YTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLI 450
Query: 66 Y-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDY-AFEL 123
+ C + R+F M+ N PNE + ++ L K+ S Y A +L
Sbjct: 451 HGFCIKGQ---------MNEASRLFKSMVEKNCEPNEVIYNTMI-LGYCKEGSSYRALKL 500
Query: 124 IKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156
+K M E + P + +Y + C+ ++++A
Sbjct: 501 LKEM-EEKELAPNVASYRYMIEVLCKERKSKEA 532
>sp|O75127|PTCD1_HUMAN Pentatricopeptide repeat-containing protein 1, mitochondrial
OS=Homo sapiens GN=PTCD1 PE=1 SV=2
Length = 700
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSAL 82
E+N+ + + C + L A +LY + S + AL +C+ S KDSAL
Sbjct: 173 ESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAES----PWKDSAL 228
Query: 83 RHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV 134
+ ++ Q+ + N N ++ ++AA D ++ K + ++ +VV
Sbjct: 229 QSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVV 280
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 70 NSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN 129
NS K + +++ +RV +M S V PN + R + + D AF++ ++M
Sbjct: 346 NSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIK 405
Query: 130 EFNVVPRLRTYDPALFCFCENLEAQKA 156
P TY + FCE E + A
Sbjct: 406 VCE--PDADTYTMVIKMFCEKKEMETA 430
>sp|Q5R655|PTCD1_PONAB Pentatricopeptide repeat-containing protein 1, mitochondrial
OS=Pongo abelii GN=PTCD1 PE=2 SV=1
Length = 698
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSAL 82
E+N+ + C + L A SLY + S + AL +C+ S KDSAL
Sbjct: 171 ESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAES----PWKDSAL 226
Query: 83 RHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV 134
+ ++ Q+ + N N ++ ++AA D ++ K + ++ +VV
Sbjct: 227 QSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHKGHVV 278
>sp|Q5XEY7|PP309_ARATH Pentatricopeptide repeat-containing protein At4g14170
OS=Arabidopsis thaliana GN=PCMP-E17 PE=2 SV=2
Length = 477
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138
D + F++FD+ML + PN V A + ++ L R+ E+N+VP L+
Sbjct: 314 DGDVVMSFKLFDEMLKEGIEPNAVTFLGVLSACAHGGLVEKSW-LYFRLMQEYNIVPELK 372
Query: 139 TYDPALFCFCEN---LEAQKAYEEQEI 162
Y C EA+K E+ +
Sbjct: 373 HYASVADCMSRAGLLEEAEKFLEDMPV 399
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 91 QMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN-EFNVVPRLRTYDPALFCFCE 149
+M+SN + P+E S+ + D AFEL+ M + EF+ P + TY+ L FC
Sbjct: 463 EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFH--PSVVTYNIVLLGFC- 519
Query: 150 NLEAQKAYEEQEITALLKVSAGTG 173
KA+ ++ +L+ G G
Sbjct: 520 -----KAHRIEDAINVLESMVGNG 538
>sp|C5M5D9|CCM1_CANTT Mitochondrial group I intron splicing factor CCM1 OS=Candida
tropicalis (strain ATCC MYA-3404 / T1) GN=CCM1 PE=3 SV=1
Length = 753
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/134 (20%), Positives = 64/134 (47%), Gaps = 25/134 (18%)
Query: 33 CTKSKDLATAISLYESALS------LNFRLSLHHFNALLYLCSNSATDPS---------L 77
K+K+L + S+Y+S LS + R ++ F+++ +L ++ D +
Sbjct: 288 VMKAKNLPLSKSIYKSILSSYVYYTKDHRRAIEVFDSMKFLSESTKPDAKVYAQIIISCM 347
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDS-----DYAFELIKRMNNEFN 132
+ + G + +M NNV PN+++++++A+ A + ++ F++ E+
Sbjct: 348 MNDDIDKGLDLLQEMRDNNVKPNQSILSALAKGCARSRQHKFQAWNHLFQIY-----EYG 402
Query: 133 VVPRLRTYDPALFC 146
P L+T++ L+
Sbjct: 403 WTPTLQTFEHMLYI 416
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 42/231 (18%)
Query: 15 KRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSAT 73
+RK NPN T F + + K L A LY+ + + + +++L+ C +
Sbjct: 323 ERKINPNVVT-FNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 381
Query: 74 DPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV 133
D + +H +F+ M+S + PN ++ K D EL + M+ +
Sbjct: 382 DEA------KH---MFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQR-GL 431
Query: 134 VPRLRTYDPALFCF-----CENLEAQKAYEE----------QEITALLKVSAGTGRVEK- 177
V TY + F C+N AQ +++ LL G++EK
Sbjct: 432 VGNTVTYTTLIHGFFQARDCDN--AQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKA 489
Query: 178 --VYQYLQ--KLRSTVRCVNE------ETGKIIEDW--FSGQKVNGVSCDL 216
V++YLQ K+ T+ N + GK+ + W F + GV D+
Sbjct: 490 MVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDV 540
>sp|P0C8Q3|PP326_ARATH Pentatricopeptide repeat-containing protein At4g19890
OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1
Length = 701
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137
K+ L +F +M + PN T++ A+EL+ M +E +P +
Sbjct: 370 KEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDE-GFMPNI 428
Query: 138 RTYDPALFCFCENLEAQKAYE 158
TY+ A+ C+ A +AYE
Sbjct: 429 YTYNAAIDSLCKKSRAPEAYE 449
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 42 AISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101
AI + + L F+ +L +F +L+ D K +++ F + ++M+ N PN
Sbjct: 271 AIWYFRKMIDLGFKPNLINFTSLI--------DGLCKKGSIKQAFEMLEEMVRNGWKPNV 322
Query: 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156
T++ + ++ AF L ++ P + TY + +C+ + +A
Sbjct: 323 YTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRA 377
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 12/127 (9%)
Query: 58 LHHFNALLYLCSNSATDPSL-----------KDSALRHGFRVFDQMLSNNVIPNEALVTS 106
LH N + L + +P + K + G R+F ++ S +IPN +
Sbjct: 366 LHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNT 425
Query: 107 VARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALL 166
+ + A EL + M + V P + TY L C+N E KA E E
Sbjct: 426 LVLGFCQSGKLNAAKELFQEMVSR-GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKS 484
Query: 167 KVSAGTG 173
+++ G G
Sbjct: 485 RMTLGIG 491
>sp|A8MHC4|TRMD_ALKOO tRNA (guanine-N(1)-)-methyltransferase OS=Alkaliphilus oremlandii
(strain OhILAs) GN=trmD PE=3 SV=1
Length = 249
Score = 32.7 bits (73), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 62 NALLYLCSN-SATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYA 120
NAL+ LC + D + D + + D +L+ IP L+ +VARL D +
Sbjct: 111 NALILLCGHYEGIDQRVIDEIVTDEISIGDYVLTGGEIPAMVLIDAVARLIPGVLSQDAS 170
Query: 121 FE 122
FE
Sbjct: 171 FE 172
>sp|Q9SV46|PP282_ARATH Pentatricopeptide repeat-containing protein At3g54980,
mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2
SV=1
Length = 851
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 85/231 (36%), Gaps = 34/231 (14%)
Query: 26 FLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHG 85
+ +++Q+C K+ DLA A SL + S S+K +
Sbjct: 271 YSLAVQACCKTLDLAMANSLLREMKEKKLCVPSQE-------TYTSVILASVKQGNMDDA 323
Query: 86 FRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145
R+ D+MLS+ + N TS+ D A L +M E P T+ +
Sbjct: 324 IRLKDEMLSDGISMNVVAATSLITGHCKNNDLVSALVLFDKMEKE-GPSPNSVTFSVLIE 382
Query: 146 CFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 205
F +N E +KA E + +L ++ V + Q K + +EE K+ ++ F
Sbjct: 383 WFRKNGEMEKALEFYKKMEVLGLTPSVFHVHTIIQGWLKGQK-----HEEALKLFDESFE 437
Query: 206 GQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVVKRGSVDESGKCCS 256
N C N +L W+ K+G DE+ + S
Sbjct: 438 TGLANVFVC------NTIL---------------SWLCKQGKTDEATELLS 467
>sp|Q9SNB7|PP264_ARATH Pentatricopeptide repeat-containing protein At3g46610
OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1
Length = 665
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89
L +C+K+ + AI ++++ + + ++ + ALL ++ L D A FRV+
Sbjct: 465 LVACSKASETTAAIQIFKAMVDNGEKPTVISYGALL----SALEKGKLYDEA----FRVW 516
Query: 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149
+ M+ + PN T++A + ++ + L+K M ++ + P + T++ +
Sbjct: 517 NHMIKVGIEPNLYAYTTMASVLTGQQKFNLLDTLLKEMASK-GIEPSVVTFNAVISGCAR 575
Query: 150 NLEAQKAYE 158
N + AYE
Sbjct: 576 NGLSGVAYE 584
>sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860
OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1
Length = 850
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 87 RVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135
+VFD+M +V+ +++ S A+L K A E+ RM NEF P
Sbjct: 183 KVFDEMSVWDVVSWNSIIESYAKLGKPK----VALEMFSRMTNEFGCRP 227
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 32/189 (16%)
Query: 15 KRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSAT 73
+RK NPN T F + + K L A LY+ + + + +++L+ C +
Sbjct: 319 ERKINPNVVT-FSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRL 377
Query: 74 DPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV 133
D + +H +F+ M+S + PN ++ + K D EL + M+ +
Sbjct: 378 DEA------KH---MFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQR-GL 427
Query: 134 VPRLRTYDPALFCF-----CENLEAQKAYEE----------QEITALLKVSAGTGRVEK- 177
V TY + F C+N AQ +++ + LL G+VE
Sbjct: 428 VGNTVTYTTLIHGFFQARECDN--AQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485
Query: 178 --VYQYLQK 184
V++YLQ+
Sbjct: 486 LVVFEYLQR 494
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 29/169 (17%)
Query: 15 KRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSAT 73
KR+ P+ T F + +C K ++ A YE + + + ++ L+Y LC S
Sbjct: 249 KREIYPDVFT-FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRL 307
Query: 74 DPS--------------------------LKDSALRHGFRVFDQMLSNNVIPNEALVTSV 107
D + K + HG ++F +M V+ N T +
Sbjct: 308 DEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTIL 367
Query: 108 ARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156
+ + A E+ +RM V P + TY+ L C+N + +KA
Sbjct: 368 IQGYCRAGKLNVAEEIFRRMVF-CGVHPNIITYNVLLHGLCDNGKIEKA 415
>sp|O80608|FB96_ARATH Putative F-box protein At2g02890 OS=Arabidopsis thaliana
GN=At2g02890 PE=4 SV=1
Length = 531
Score = 32.0 bits (71), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 120 AFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158
AF L F+V Y PAL CFCE + K YE
Sbjct: 75 AFTLSLASTAAFSVFSLASAYAPALLCFCETFGSLKGYE 113
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 32.0 bits (71), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 70 NSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN 129
N+ + K + G ++F +M ++ N ++ + D D A E +M+
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393
Query: 130 EFNVVPRLRTYDPALFCFCENLEAQKA---YEEQE----------ITALLKVSAGTGRVE 176
F + P + TY+ L C+N E +KA +E+ + T +++ TG+VE
Sbjct: 394 -FGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVE 452
Query: 177 KVY 179
+ +
Sbjct: 453 EAW 455
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 19 NPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLK 78
+P+ T F L +C KS+ I ++ + + + L N+L++ + S +
Sbjct: 131 SPDKYT-FPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSAR 189
Query: 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIK 125
+VFD+M NV+ +++ AR +K D F +++
Sbjct: 190 --------KVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVR 228
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 70/182 (38%), Gaps = 32/182 (17%)
Query: 45 LYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104
L E+ F +S H F ++ N+ K + G VF +M ++ N
Sbjct: 377 LDEAKQMFEFMVSKHCFPDVV--TYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434
Query: 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITA 164
+ + D D A E+ K M ++ V P + TY+ L C+N + +KA
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSD-GVPPNIMTYNTLLDGLCKNGKLEKAM------- 486
Query: 165 LLKVSAGTGRVEKVYQYLQ--KLRSTVRCVNE------ETGKIIEDW--FSGQKVNGVSC 214
V++YLQ K+ T+ N + GK+ + W F + GV
Sbjct: 487 ------------VVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKP 534
Query: 215 DL 216
D+
Sbjct: 535 DV 536
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 20/157 (12%)
Query: 4 TTSANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNA 63
T A+ +P K P E FL L+ + +D A+SL+ + FR +++
Sbjct: 30 TKKASSHEPTHKFTRKPWEEVPFLTDLK---EIEDPEEALSLFHQYQEMGFRHDYPSYSS 86
Query: 64 LLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NNVIPNEALVTSVARLAASKKDSDY 119
L+Y + S F DQ+L NV E+L + + D
Sbjct: 87 LIYKLAKS------------RNFDAVDQILRLVRYRNVRCRESLFMGLIQHYGKAGSVDK 134
Query: 120 AFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156
A ++ ++ + F+ V +++ + + +N E +KA
Sbjct: 135 AIDVFHKITS-FDCVRTIQSLNTLINVLVDNGELEKA 170
>sp|O80958|PP194_ARATH Pentatricopeptide repeat-containing protein At2g39230,
mitochondrial OS=Arabidopsis thaliana GN=LOJ PE=1 SV=1
Length = 867
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 75/191 (39%), Gaps = 15/191 (7%)
Query: 26 FLISLQSCTKSKDLATAISLY-ESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRH 84
F +++Q+ K+ DL A+ L E L S + +++ +K+ +
Sbjct: 277 FSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIV--------AFVKEGNMEE 328
Query: 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL 144
RV D+M+ + + TS+ + A +L RM E + P + +
Sbjct: 329 AVRVMDEMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEE-GLAPDKVMFSVMV 387
Query: 145 FCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204
FC+N+E +KA E ++++ + V + Q K S E +I D F
Sbjct: 388 EWFCKNMEMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESP-----EAALEIFNDSF 442
Query: 205 SGQKVNGVSCD 215
+G C+
Sbjct: 443 ESWIAHGFMCN 453
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 14/144 (9%)
Query: 19 NPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSL 77
+P ++ + K D A S Y L + +N+++ LC A D ++
Sbjct: 192 SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAM 251
Query: 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137
+ V + M+ N V+P+ S+ S A +K+M ++ V P +
Sbjct: 252 E---------VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSD-GVEPDV 301
Query: 138 RTYDPALFCFCEN---LEAQKAYE 158
TY + C+N +EA+K ++
Sbjct: 302 VTYSLLMDYLCKNGRCMEARKIFD 325
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,846,194
Number of Sequences: 539616
Number of extensions: 4193167
Number of successful extensions: 12468
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 12391
Number of HSP's gapped (non-prelim): 132
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)