Query 048764
Match_columns 295
No_of_seqs 274 out of 2211
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 12:56:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.2E-30 2.6E-35 258.7 22.7 237 25-275 292-626 (697)
2 PLN03218 maturation of RBCL 1; 100.0 4.9E-30 1.1E-34 260.1 24.8 183 15-206 463-661 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 1.6E-29 3.5E-34 256.2 24.1 208 16-228 499-750 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 4.2E-29 9.1E-34 252.9 23.0 171 98-275 551-788 (857)
5 PLN03081 pentatricopeptide (PP 100.0 1.4E-27 3E-32 236.8 21.7 177 17-206 252-438 (697)
6 PLN03077 Protein ECB2; Provisi 99.9 6.9E-27 1.5E-31 236.8 19.3 203 21-228 149-420 (857)
7 PF13041 PPR_2: PPR repeat fam 99.6 1.7E-15 3.6E-20 98.7 5.4 50 99-149 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.5 1.5E-13 3.2E-18 89.5 6.3 48 22-69 1-49 (50)
9 KOG4422 Uncharacterized conser 99.4 6.8E-12 1.5E-16 113.0 15.5 171 23-206 207-445 (625)
10 PRK11788 tetratricopeptide rep 99.3 7.7E-10 1.7E-14 102.3 21.3 168 25-204 143-325 (389)
11 PRK11788 tetratricopeptide rep 99.2 1.6E-09 3.4E-14 100.2 17.6 159 25-195 182-354 (389)
12 PF12854 PPR_1: PPR repeat 99.1 6.1E-11 1.3E-15 70.4 4.3 34 95-128 1-34 (34)
13 KOG4422 Uncharacterized conser 99.0 4.9E-09 1.1E-13 94.8 13.2 120 55-206 204-324 (625)
14 PF12854 PPR_1: PPR repeat 98.8 9.3E-09 2E-13 60.9 3.7 33 18-50 1-34 (34)
15 TIGR02917 PEP_TPR_lipo putativ 98.7 6E-06 1.3E-10 83.3 22.7 152 25-188 535-698 (899)
16 TIGR00756 PPR pentatricopeptid 98.6 4.5E-08 9.8E-13 57.8 3.7 35 102-137 1-35 (35)
17 TIGR02917 PEP_TPR_lipo putativ 98.6 8E-06 1.7E-10 82.4 22.1 117 82-203 752-880 (899)
18 TIGR00756 PPR pentatricopeptid 98.6 1E-07 2.2E-12 56.3 4.2 34 25-58 2-35 (35)
19 PF08579 RPM2: Mitochondrial r 98.5 1.6E-06 3.6E-11 65.0 11.0 89 25-113 27-116 (120)
20 PF13812 PPR_3: Pentatricopept 98.5 1.3E-07 2.8E-12 55.7 3.7 33 102-135 2-34 (34)
21 TIGR02521 type_IV_pilW type IV 98.5 8.3E-05 1.8E-09 62.4 22.2 153 25-188 33-198 (234)
22 KOG4318 Bicoid mRNA stability 98.5 5E-07 1.1E-11 88.2 8.1 61 162-229 207-268 (1088)
23 PF13812 PPR_3: Pentatricopept 98.4 5.1E-07 1.1E-11 53.1 4.5 32 25-56 3-34 (34)
24 KOG4318 Bicoid mRNA stability 98.4 1.2E-06 2.6E-11 85.6 8.8 170 16-198 17-275 (1088)
25 PF01535 PPR: PPR repeat; Int 98.3 7.8E-07 1.7E-11 51.0 3.0 31 102-133 1-31 (31)
26 TIGR02521 type_IV_pilW type IV 98.2 0.00025 5.4E-09 59.4 18.7 152 25-187 67-231 (234)
27 PF01535 PPR: PPR repeat; Int 98.2 2.3E-06 5E-11 49.0 3.6 30 25-54 2-31 (31)
28 PF10037 MRP-S27: Mitochondria 98.1 3E-05 6.6E-10 72.1 11.9 119 23-150 66-186 (429)
29 PRK15174 Vi polysaccharide exp 98.1 0.00068 1.5E-08 67.4 21.6 119 25-155 146-264 (656)
30 PF08579 RPM2: Mitochondrial r 98.1 2.7E-05 6E-10 58.5 8.8 78 62-149 29-116 (120)
31 PF06239 ECSIT: Evolutionarily 98.0 3.7E-05 8E-10 64.5 8.5 98 55-156 44-157 (228)
32 PF06239 ECSIT: Evolutionarily 98.0 0.00013 2.9E-09 61.2 11.4 93 25-117 49-154 (228)
33 PF13429 TPR_15: Tetratricopep 97.9 3.1E-05 6.8E-10 68.5 8.0 103 82-187 126-242 (280)
34 PF13429 TPR_15: Tetratricopep 97.9 0.00026 5.7E-09 62.6 12.9 151 25-187 112-276 (280)
35 TIGR00990 3a0801s09 mitochondr 97.9 0.002 4.4E-08 63.6 20.1 150 25-188 333-496 (615)
36 PRK15174 Vi polysaccharide exp 97.9 0.002 4.4E-08 64.0 19.8 46 82-128 126-171 (656)
37 TIGR00990 3a0801s09 mitochondr 97.8 0.0056 1.2E-07 60.5 21.7 165 25-204 367-552 (615)
38 PRK09782 bacteriophage N4 rece 97.7 0.0061 1.3E-07 63.1 20.2 149 25-188 544-706 (987)
39 PRK10747 putative protoheme IX 97.6 0.0083 1.8E-07 56.0 18.7 165 25-206 189-373 (398)
40 PRK12370 invasion protein regu 97.6 0.0064 1.4E-07 59.3 18.6 137 36-185 317-467 (553)
41 PRK12370 invasion protein regu 97.6 0.0099 2.1E-07 58.0 19.3 149 25-187 340-501 (553)
42 COG4783 Putative Zn-dependent 97.5 0.021 4.6E-07 53.3 19.4 158 20-198 304-463 (484)
43 PRK09782 bacteriophage N4 rece 97.5 0.022 4.8E-07 59.1 21.5 146 33-195 519-677 (987)
44 PF10037 MRP-S27: Mitochondria 97.5 0.0027 5.8E-08 59.3 13.6 105 45-158 50-159 (429)
45 PRK11447 cellulose synthase su 97.5 0.015 3.3E-07 61.6 20.7 89 98-188 600-700 (1157)
46 PRK10049 pgaA outer membrane p 97.5 0.031 6.8E-07 56.7 22.0 163 29-203 278-469 (765)
47 PRK10747 putative protoheme IX 97.4 0.03 6.6E-07 52.2 20.0 152 24-187 119-291 (398)
48 COG2956 Predicted N-acetylgluc 97.3 0.073 1.6E-06 47.6 19.6 113 77-195 118-285 (389)
49 TIGR00540 hemY_coli hemY prote 97.3 0.021 4.5E-07 53.5 17.6 168 25-205 189-381 (409)
50 KOG1840 Kinesin light chain [C 97.3 0.016 3.4E-07 55.5 16.8 163 17-187 191-395 (508)
51 PRK14574 hmsH outer membrane p 97.3 0.022 4.8E-07 57.9 18.7 156 22-195 34-203 (822)
52 TIGR03302 OM_YfiO outer membra 97.2 0.059 1.3E-06 46.1 18.0 100 25-137 35-148 (235)
53 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.01 2.2E-07 55.1 13.9 118 25-158 171-289 (395)
54 KOG1840 Kinesin light chain [C 97.1 0.031 6.8E-07 53.5 16.5 159 19-186 277-477 (508)
55 PRK11447 cellulose synthase su 97.1 0.052 1.1E-06 57.7 19.5 148 28-192 578-745 (1157)
56 PF05843 Suf: Suppressor of fo 97.0 0.015 3.2E-07 51.7 12.8 133 25-188 3-136 (280)
57 cd05804 StaR_like StaR_like; a 97.0 0.1 2.2E-06 47.4 18.5 147 30-187 50-214 (355)
58 PRK10049 pgaA outer membrane p 97.0 0.11 2.3E-06 52.9 20.0 148 25-185 17-176 (765)
59 PRK11189 lipoprotein NlpI; Pro 97.0 0.26 5.7E-06 44.0 21.8 92 26-128 67-159 (296)
60 TIGR00540 hemY_coli hemY prote 96.9 0.15 3.3E-06 47.8 19.3 155 25-195 120-297 (409)
61 PRK14574 hmsH outer membrane p 96.9 0.13 2.9E-06 52.3 19.6 156 29-195 298-484 (822)
62 KOG1126 DNA-binding cell divis 96.9 0.015 3.3E-07 56.0 12.1 163 21-204 417-601 (638)
63 KOG2076 RNA polymerase III tra 96.9 0.062 1.3E-06 53.6 16.3 183 10-197 125-354 (895)
64 TIGR02552 LcrH_SycD type III s 96.9 0.062 1.4E-06 41.5 13.7 108 25-145 19-126 (135)
65 PF04733 Coatomer_E: Coatomer 96.8 0.0093 2E-07 53.2 9.8 138 31-188 110-265 (290)
66 PRK15359 type III secretion sy 96.8 0.056 1.2E-06 42.9 12.9 110 19-142 21-130 (144)
67 KOG1070 rRNA processing protei 96.7 0.082 1.8E-06 55.3 16.4 162 21-194 1454-1669(1710)
68 KOG3941 Intermediate in Toll s 96.7 0.023 4.9E-07 49.8 10.3 102 25-128 69-186 (406)
69 cd00189 TPR Tetratricopeptide 96.6 0.052 1.1E-06 37.5 10.6 93 26-128 3-95 (100)
70 COG3063 PilF Tfp pilus assembl 96.6 0.41 8.8E-06 40.9 17.5 162 25-199 37-212 (250)
71 KOG4626 O-linked N-acetylgluco 96.6 0.18 3.9E-06 48.9 16.3 154 25-194 322-489 (966)
72 COG3071 HemY Uncharacterized e 96.5 0.42 9.1E-06 43.8 18.0 168 23-206 187-373 (400)
73 PF09976 TPR_21: Tetratricopep 96.5 0.13 2.8E-06 40.7 13.4 93 25-128 14-112 (145)
74 PF04733 Coatomer_E: Coatomer 96.5 0.028 6.1E-07 50.2 10.4 141 28-186 70-228 (290)
75 PRK10370 formate-dependent nit 96.5 0.13 2.8E-06 43.2 14.0 111 25-146 75-186 (198)
76 PF09295 ChAPs: ChAPs (Chs5p-A 96.4 0.087 1.9E-06 49.0 13.6 115 59-187 170-296 (395)
77 TIGR02795 tol_pal_ybgF tol-pal 96.4 0.17 3.6E-06 37.7 13.1 99 25-132 4-106 (119)
78 PF09976 TPR_21: Tetratricopep 96.3 0.27 5.8E-06 38.9 14.2 116 59-184 13-143 (145)
79 PRK11189 lipoprotein NlpI; Pro 96.2 0.58 1.3E-05 41.8 17.4 138 37-186 40-192 (296)
80 cd05804 StaR_like StaR_like; a 96.1 0.78 1.7E-05 41.5 18.2 155 27-191 118-296 (355)
81 KOG3941 Intermediate in Toll s 96.0 0.019 4.1E-07 50.3 6.3 99 55-157 64-178 (406)
82 KOG1129 TPR repeat-containing 95.9 0.15 3.3E-06 45.7 11.7 121 25-158 258-379 (478)
83 TIGR02552 LcrH_SycD type III s 95.9 0.13 2.9E-06 39.6 10.6 80 82-187 33-113 (135)
84 KOG4626 O-linked N-acetylgluco 95.9 0.17 3.8E-06 49.0 12.5 156 25-186 220-415 (966)
85 PRK10153 DNA-binding transcrip 95.8 0.95 2.1E-05 43.8 17.7 150 25-204 339-496 (517)
86 PF12921 ATP13: Mitochondrial 95.7 0.15 3.3E-06 39.6 9.7 82 57-146 1-97 (126)
87 PF14559 TPR_19: Tetratricopep 95.7 0.048 1E-06 36.8 6.3 62 79-144 4-65 (68)
88 KOG1914 mRNA cleavage and poly 95.6 0.32 7E-06 46.3 13.0 130 17-158 360-493 (656)
89 KOG3081 Vesicle coat complex C 95.6 1 2.2E-05 39.4 14.9 110 30-158 115-228 (299)
90 PRK15359 type III secretion sy 95.5 0.25 5.3E-06 39.2 10.6 88 82-197 40-128 (144)
91 PF12569 NARP1: NMDA receptor- 95.5 1.6 3.5E-05 42.2 18.0 106 98-206 189-309 (517)
92 PLN03088 SGT1, suppressor of 95.4 0.41 8.9E-06 44.0 13.1 104 31-147 10-113 (356)
93 KOG4340 Uncharacterized conser 95.4 0.36 7.8E-06 42.9 11.8 143 32-184 153-335 (459)
94 PF12921 ATP13: Mitochondrial 95.3 0.23 5E-06 38.5 9.6 94 100-205 1-99 (126)
95 PRK10370 formate-dependent nit 95.3 1.1 2.4E-05 37.6 14.5 114 82-200 55-184 (198)
96 cd00189 TPR Tetratricopeptide 95.1 0.19 4E-06 34.5 8.0 49 79-128 13-61 (100)
97 PF13170 DUF4003: Protein of u 95.1 0.68 1.5E-05 41.5 13.1 137 39-200 78-223 (297)
98 COG2956 Predicted N-acetylgluc 95.1 0.62 1.3E-05 41.8 12.4 106 82-192 51-174 (389)
99 PRK02603 photosystem I assembl 95.1 1.4 3E-05 35.8 14.1 114 25-152 37-166 (172)
100 smart00299 CLH Clathrin heavy 95.0 1.3 2.8E-05 34.5 13.6 88 25-128 9-96 (140)
101 CHL00033 ycf3 photosystem I as 95.0 1 2.2E-05 36.3 13.0 94 25-127 37-139 (168)
102 COG3071 HemY Uncharacterized e 94.8 3.2 7E-05 38.2 20.5 165 18-193 113-297 (400)
103 KOG2003 TPR repeat-containing 94.7 1.5 3.2E-05 41.2 14.3 154 36-204 503-704 (840)
104 PF12895 Apc3: Anaphase-promot 94.7 0.065 1.4E-06 38.0 4.6 80 36-126 2-83 (84)
105 PF03704 BTAD: Bacterial trans 94.7 0.18 4E-06 39.7 7.6 98 33-139 16-138 (146)
106 KOG2076 RNA polymerase III tra 94.6 1 2.3E-05 45.3 14.0 159 25-186 318-510 (895)
107 PRK15179 Vi polysaccharide bio 94.6 2 4.3E-05 43.2 16.2 120 25-158 88-209 (694)
108 KOG0547 Translocase of outer m 94.6 1 2.2E-05 42.7 13.0 149 25-187 396-565 (606)
109 KOG3081 Vesicle coat complex C 94.5 1 2.3E-05 39.3 12.0 110 30-153 144-257 (299)
110 COG5010 TadD Flp pilus assembl 94.2 2.3 5E-05 36.9 13.5 142 30-185 73-228 (257)
111 COG3063 PilF Tfp pilus assembl 94.1 3.4 7.3E-05 35.5 16.2 157 19-187 63-235 (250)
112 TIGR03302 OM_YfiO outer membra 94.1 2.9 6.3E-05 35.5 14.4 140 25-187 72-231 (235)
113 PF12895 Apc3: Anaphase-promot 94.0 0.042 9.2E-07 39.0 2.4 47 80-126 3-50 (84)
114 PF04840 Vps16_C: Vps16, C-ter 94.0 2.6 5.7E-05 38.1 14.4 93 82-185 193-288 (319)
115 KOG1129 TPR repeat-containing 93.9 1.6 3.4E-05 39.4 12.3 155 25-193 224-392 (478)
116 PF03704 BTAD: Bacterial trans 93.9 0.4 8.7E-06 37.7 8.1 77 102-202 63-144 (146)
117 KOG1155 Anaphase-promoting com 93.8 6.2 0.00013 37.3 16.3 146 29-187 336-494 (559)
118 PRK02603 photosystem I assembl 93.8 1.9 4.1E-05 35.0 12.1 113 78-205 47-162 (172)
119 KOG2002 TPR-containing nuclear 93.8 0.28 6.1E-06 49.6 8.2 145 37-191 626-801 (1018)
120 PRK15179 Vi polysaccharide bio 93.7 5.5 0.00012 40.1 17.3 119 55-187 83-216 (694)
121 KOG2003 TPR repeat-containing 93.7 1.2 2.6E-05 41.8 11.6 121 25-158 560-681 (840)
122 KOG2002 TPR-containing nuclear 93.7 2 4.4E-05 43.7 13.9 160 32-196 573-751 (1018)
123 PF12688 TPR_5: Tetratrico pep 93.6 2.5 5.4E-05 32.4 11.7 102 32-149 10-118 (120)
124 COG5010 TadD Flp pilus assembl 93.6 1.1 2.4E-05 38.9 10.6 122 25-158 102-223 (257)
125 TIGR02795 tol_pal_ybgF tol-pal 93.3 1.6 3.5E-05 32.2 10.4 86 82-188 18-105 (119)
126 PRK14720 transcript cleavage f 92.9 11 0.00023 39.0 17.9 161 19-187 25-197 (906)
127 PF13432 TPR_16: Tetratricopep 92.9 0.49 1.1E-05 31.4 6.1 47 81-128 12-58 (65)
128 KOG1915 Cell cycle control pro 92.7 6.2 0.00013 37.5 14.6 101 82-187 157-272 (677)
129 PF13281 DUF4071: Domain of un 92.5 8.7 0.00019 35.5 16.7 155 25-188 144-334 (374)
130 PF14559 TPR_19: Tetratricopep 92.4 0.56 1.2E-05 31.4 6.0 64 34-108 2-65 (68)
131 COG4235 Cytochrome c biogenesi 92.4 2.4 5.3E-05 37.5 11.2 117 20-147 152-270 (287)
132 PLN03088 SGT1, suppressor of 92.4 1.9 4.2E-05 39.6 11.2 75 78-156 14-89 (356)
133 KOG3785 Uncharacterized conser 92.0 7.5 0.00016 35.6 13.9 111 82-197 375-497 (557)
134 KOG4570 Uncharacterized conser 92.0 0.84 1.8E-05 40.8 7.8 94 25-128 66-162 (418)
135 PF05843 Suf: Suppressor of fo 91.7 3.1 6.8E-05 36.8 11.4 113 20-147 33-150 (280)
136 KOG1155 Anaphase-promoting com 91.6 12 0.00027 35.4 16.5 122 24-158 365-487 (559)
137 PF12569 NARP1: NMDA receptor- 91.3 15 0.00032 35.7 17.1 128 19-158 187-326 (517)
138 KOG3616 Selective LIM binding 91.1 2.3 4.9E-05 42.4 10.3 130 31-184 740-875 (1636)
139 KOG2053 Mitochondrial inherita 91.0 20 0.00043 36.6 17.5 117 19-148 37-155 (932)
140 CHL00033 ycf3 photosystem I as 91.0 4.8 0.0001 32.3 11.1 64 82-148 51-117 (168)
141 PF13424 TPR_12: Tetratricopep 91.0 1.2 2.6E-05 30.7 6.6 67 101-185 5-72 (78)
142 COG4783 Putative Zn-dependent 90.9 15 0.00032 34.9 16.9 147 25-186 276-435 (484)
143 KOG1126 DNA-binding cell divis 90.9 8.7 0.00019 37.7 14.0 156 18-187 448-619 (638)
144 PRK10803 tol-pal system protei 90.7 8.1 0.00018 33.9 12.9 93 25-128 145-244 (263)
145 KOG1914 mRNA cleavage and poly 90.7 8 0.00017 37.3 13.2 135 41-188 349-501 (656)
146 KOG0985 Vesicle coat protein c 90.6 16 0.00034 38.2 15.8 159 25-198 986-1172(1666)
147 KOG1915 Cell cycle control pro 90.5 6 0.00013 37.6 12.1 145 35-188 378-536 (677)
148 PF07035 Mic1: Colon cancer-as 90.5 8.3 0.00018 31.4 12.0 93 86-185 14-115 (167)
149 PLN03098 LPA1 LOW PSII ACCUMUL 90.5 9.1 0.0002 36.2 13.4 63 55-128 72-139 (453)
150 COG5107 RNA14 Pre-mRNA 3'-end 90.4 9.8 0.00021 36.0 13.3 112 82-200 413-541 (660)
151 KOG1173 Anaphase-promoting com 90.2 9.4 0.0002 36.9 13.4 76 81-158 429-510 (611)
152 PF13432 TPR_16: Tetratricopep 90.2 1.9 4.1E-05 28.5 6.8 56 30-94 4-59 (65)
153 PF13929 mRNA_stabil: mRNA sta 89.6 14 0.0003 32.8 13.2 140 38-206 143-290 (292)
154 PF04840 Vps16_C: Vps16, C-ter 89.4 11 0.00025 34.0 13.0 81 99-184 175-262 (319)
155 PF12688 TPR_5: Tetratrico pep 89.3 6 0.00013 30.3 9.6 75 81-158 16-96 (120)
156 KOG3616 Selective LIM binding 89.3 3.9 8.4E-05 40.9 10.2 43 141-183 886-932 (1636)
157 PLN03098 LPA1 LOW PSII ACCUMUL 88.8 6.2 0.00014 37.2 11.0 58 98-158 72-133 (453)
158 PRK04841 transcriptional regul 88.5 21 0.00045 36.9 16.0 148 31-187 460-640 (903)
159 PF11207 DUF2989: Protein of u 88.3 5.5 0.00012 33.5 9.3 74 83-157 123-198 (203)
160 PF14938 SNAP: Soluble NSF att 88.2 16 0.00034 32.3 13.1 152 25-188 37-225 (282)
161 KOG2376 Signal recognition par 88.1 17 0.00038 35.3 13.6 28 26-53 15-42 (652)
162 PF13525 YfiO: Outer membrane 88.0 15 0.00031 30.7 12.9 120 58-187 6-138 (203)
163 KOG1070 rRNA processing protei 87.7 39 0.00084 36.6 16.6 124 20-157 1527-1654(1710)
164 PF13170 DUF4003: Protein of u 87.5 3 6.6E-05 37.3 8.0 99 38-143 118-223 (297)
165 KOG1173 Anaphase-promoting com 86.9 2.5 5.5E-05 40.6 7.3 119 18-148 407-533 (611)
166 KOG2047 mRNA splicing factor [ 86.9 30 0.00065 34.3 14.4 111 82-196 154-285 (835)
167 KOG0985 Vesicle coat protein c 86.6 24 0.00052 36.9 14.1 47 137-183 1249-1303(1666)
168 smart00299 CLH Clathrin heavy 86.2 14 0.0003 28.6 14.4 120 61-203 10-134 (140)
169 KOG0553 TPR repeat-containing 86.1 7.9 0.00017 34.5 9.5 84 111-199 91-187 (304)
170 PF13424 TPR_12: Tetratricopep 86.1 2.5 5.5E-05 29.0 5.5 62 59-128 6-73 (78)
171 PF14938 SNAP: Soluble NSF att 85.7 20 0.00043 31.6 12.3 124 25-158 77-217 (282)
172 KOG3785 Uncharacterized conser 85.5 20 0.00043 33.0 11.8 152 22-185 285-454 (557)
173 KOG2053 Mitochondrial inherita 85.2 18 0.00039 36.9 12.5 120 80-206 23-157 (932)
174 PF13414 TPR_11: TPR repeat; P 85.1 2.1 4.5E-05 28.6 4.5 30 101-131 3-32 (69)
175 KOG0547 Translocase of outer m 84.9 18 0.0004 34.5 11.7 127 19-158 422-558 (606)
176 PRK10803 tol-pal system protei 84.8 19 0.00042 31.6 11.6 93 101-198 143-254 (263)
177 KOG1128 Uncharacterized conser 84.8 13 0.00027 37.1 11.0 157 25-187 426-615 (777)
178 PRK15363 pathogenicity island 84.7 18 0.00039 29.1 10.3 91 65-169 43-133 (157)
179 PRK04841 transcriptional regul 84.6 53 0.0011 33.9 17.5 154 25-188 533-720 (903)
180 PRK14720 transcript cleavage f 84.4 47 0.001 34.5 15.4 130 29-188 122-252 (906)
181 PF13176 TPR_7: Tetratricopept 84.2 1.9 4.2E-05 25.1 3.5 26 103-128 1-26 (36)
182 COG3629 DnrI DNA-binding trans 83.9 6.3 0.00014 34.9 8.0 67 139-205 155-238 (280)
183 KOG3617 WD40 and TPR repeat-co 83.6 7.9 0.00017 39.3 9.2 47 6-52 783-829 (1416)
184 KOG2376 Signal recognition par 83.6 17 0.00037 35.4 11.1 114 25-150 378-505 (652)
185 PF02284 COX5A: Cytochrome c o 83.5 8 0.00017 28.8 7.0 62 83-146 27-88 (108)
186 KOG2297 Predicted translation 83.3 8.2 0.00018 34.6 8.3 49 19-73 161-211 (412)
187 PF10602 RPN7: 26S proteasome 83.2 24 0.00052 28.9 11.2 109 25-144 38-158 (177)
188 KOG0495 HAT repeat protein [RN 82.5 56 0.0012 32.6 16.5 116 80-201 598-726 (913)
189 PF13414 TPR_11: TPR repeat; P 82.4 6.9 0.00015 25.9 6.3 61 58-128 3-65 (69)
190 COG3629 DnrI DNA-binding trans 81.7 15 0.00033 32.6 9.5 65 81-146 168-236 (280)
191 PF13176 TPR_7: Tetratricopept 81.6 3.8 8.2E-05 23.8 4.1 26 25-50 1-26 (36)
192 KOG1125 TPR repeat-containing 81.4 55 0.0012 31.9 13.7 105 39-156 410-517 (579)
193 PRK14956 DNA polymerase III su 81.2 48 0.001 31.9 13.3 106 83-200 183-289 (484)
194 cd00923 Cyt_c_Oxidase_Va Cytoc 81.0 7.8 0.00017 28.5 6.2 63 82-146 23-85 (103)
195 KOG4340 Uncharacterized conser 80.7 42 0.00091 30.2 11.7 162 20-194 7-213 (459)
196 PF04053 Coatomer_WDAD: Coatom 80.6 27 0.00058 33.2 11.5 133 34-184 272-427 (443)
197 PF13371 TPR_9: Tetratricopept 79.5 16 0.00034 24.4 7.7 20 109-128 3-22 (73)
198 PF13762 MNE1: Mitochondrial s 79.4 24 0.00052 28.0 9.0 93 48-150 27-128 (145)
199 PRK15363 pathogenicity island 79.1 32 0.00069 27.7 10.1 76 109-188 43-132 (157)
200 PRK10153 DNA-binding transcrip 78.6 29 0.00064 33.7 11.3 88 40-141 401-490 (517)
201 KOG4570 Uncharacterized conser 78.5 34 0.00074 31.0 10.5 97 51-158 57-156 (418)
202 KOG2041 WD40 repeat protein [G 78.4 30 0.00064 34.7 10.9 123 25-158 738-873 (1189)
203 KOG3617 WD40 and TPR repeat-co 78.1 29 0.00063 35.5 10.9 109 25-158 728-847 (1416)
204 PF07035 Mic1: Colon cancer-as 78.1 36 0.00078 27.7 12.8 123 44-185 15-146 (167)
205 KOG0495 HAT repeat protein [RN 77.9 79 0.0017 31.6 19.4 205 32-255 593-814 (913)
206 KOG2280 Vacuolar assembly/sort 77.0 9.8 0.00021 38.0 7.4 99 82-185 664-770 (829)
207 PF11663 Toxin_YhaV: Toxin wit 76.6 2 4.4E-05 33.5 2.2 32 78-111 107-138 (140)
208 COG5107 RNA14 Pre-mRNA 3'-end 76.2 33 0.00073 32.6 10.2 81 101-183 397-490 (660)
209 PF13428 TPR_14: Tetratricopep 76.0 6.1 0.00013 24.0 3.9 33 103-138 3-35 (44)
210 PF13371 TPR_9: Tetratricopept 75.9 19 0.00041 24.0 6.9 57 31-96 3-59 (73)
211 KOG1125 TPR repeat-containing 75.7 38 0.00082 32.9 10.7 122 79-204 407-552 (579)
212 PF13374 TPR_10: Tetratricopep 75.5 6.6 0.00014 22.9 4.0 28 101-128 2-29 (42)
213 PF11207 DUF2989: Protein of u 75.4 35 0.00076 28.7 9.3 64 113-179 119-198 (203)
214 KOG1174 Anaphase-promoting com 75.4 74 0.0016 30.0 15.5 175 20-205 228-482 (564)
215 PF11663 Toxin_YhaV: Toxin wit 74.5 3 6.6E-05 32.6 2.7 32 36-69 108-139 (140)
216 PF11848 DUF3368: Domain of un 74.0 12 0.00026 23.5 5.0 38 30-67 9-46 (48)
217 PRK10564 maltose regulon perip 74.0 8.1 0.00018 34.5 5.5 43 20-62 252-296 (303)
218 PF13512 TPR_18: Tetratricopep 73.8 43 0.00092 26.5 11.8 88 56-154 9-99 (142)
219 PF11848 DUF3368: Domain of un 72.6 19 0.00041 22.6 5.6 42 60-110 5-46 (48)
220 PF13374 TPR_10: Tetratricopep 71.7 9.6 0.00021 22.1 4.1 27 25-51 4-30 (42)
221 KOG2796 Uncharacterized conser 71.6 54 0.0012 29.1 9.8 42 25-66 214-255 (366)
222 COG0735 Fur Fe2+/Zn2+ uptake r 70.4 8.8 0.00019 30.4 4.6 42 163-204 24-65 (145)
223 KOG1156 N-terminal acetyltrans 68.6 1.3E+02 0.0028 29.9 13.7 126 19-158 364-503 (700)
224 PF02284 COX5A: Cytochrome c o 68.1 23 0.0005 26.4 5.9 45 20-66 41-87 (108)
225 KOG0553 TPR repeat-containing 67.7 91 0.002 27.9 10.6 110 25-148 83-193 (304)
226 COG3898 Uncharacterized membra 67.2 1.1E+02 0.0024 28.7 14.0 36 102-137 189-224 (531)
227 PF13762 MNE1: Mitochondrial s 67.2 19 0.00041 28.6 5.7 51 22-72 78-129 (145)
228 TIGR00373 conserved hypothetic 66.7 6.9 0.00015 31.5 3.3 33 248-281 125-157 (158)
229 PF04423 Rad50_zn_hook: Rad50 66.6 9.6 0.00021 24.5 3.4 27 251-282 20-46 (54)
230 PF13428 TPR_14: Tetratricopep 66.5 26 0.00056 21.1 5.3 28 25-52 3-30 (44)
231 KOG2796 Uncharacterized conser 66.1 97 0.0021 27.5 12.5 112 82-198 193-323 (366)
232 PRK10866 outer membrane biogen 65.5 89 0.0019 26.9 14.2 83 56-148 31-115 (243)
233 PF10366 Vps39_1: Vacuolar sor 64.9 56 0.0012 24.4 7.9 65 105-187 3-67 (108)
234 PRK07764 DNA polymerase III su 64.3 1.2E+02 0.0027 31.3 12.4 99 83-193 182-281 (824)
235 PRK08691 DNA polymerase III su 64.0 1.7E+02 0.0037 29.7 12.9 102 83-197 181-283 (709)
236 KOG0548 Molecular co-chaperone 63.8 29 0.00063 33.4 7.2 78 77-158 13-91 (539)
237 KOG1538 Uncharacterized conser 63.4 1.4E+02 0.003 30.0 11.6 69 112-190 758-848 (1081)
238 PF04053 Coatomer_WDAD: Coatom 63.3 81 0.0018 30.0 10.3 125 22-180 294-436 (443)
239 KOG1156 N-terminal acetyltrans 62.2 1.7E+02 0.0038 29.1 15.9 90 98-190 366-470 (700)
240 PRK06266 transcription initiat 62.0 9.6 0.00021 31.4 3.4 34 248-282 133-166 (178)
241 PRK14958 DNA polymerase III su 61.8 1.6E+02 0.0035 28.6 13.2 95 93-200 192-286 (509)
242 PF07721 TPR_4: Tetratricopept 61.6 16 0.00034 19.4 3.1 22 104-125 4-25 (26)
243 PF00637 Clathrin: Region in C 61.1 2.7 5.9E-05 32.7 -0.0 86 28-128 12-97 (143)
244 COG4455 ImpE Protein of avirul 60.5 74 0.0016 27.4 8.3 77 25-111 3-82 (273)
245 KOG1128 Uncharacterized conser 60.0 75 0.0016 32.0 9.4 135 20-158 453-608 (777)
246 KOG1127 TPR repeat-containing 59.5 2E+02 0.0044 30.3 12.5 75 79-158 575-651 (1238)
247 PF00637 Clathrin: Region in C 59.1 2.4 5.2E-05 33.1 -0.7 108 80-204 21-135 (143)
248 PRK10564 maltose regulon perip 58.1 13 0.00029 33.1 3.8 47 97-144 252-299 (303)
249 smart00804 TAP_C C-terminal do 58.0 10 0.00022 25.5 2.3 23 37-59 39-62 (63)
250 PF09613 HrpB1_HrpK: Bacterial 57.2 1E+02 0.0022 24.9 9.4 62 82-149 26-88 (160)
251 KOG0548 Molecular co-chaperone 56.9 1.9E+02 0.0042 28.0 14.8 149 28-201 303-464 (539)
252 KOG4077 Cytochrome c oxidase, 56.6 50 0.0011 25.7 6.1 60 84-145 67-126 (149)
253 KOG4162 Predicted calmodulin-b 55.6 2.4E+02 0.0052 28.7 14.3 187 25-228 325-545 (799)
254 TIGR03504 FimV_Cterm FimV C-te 55.6 19 0.00042 22.2 3.2 26 106-132 4-29 (44)
255 PF12796 Ank_2: Ankyrin repeat 55.5 36 0.00077 23.6 5.1 83 31-137 2-87 (89)
256 PF10300 DUF3808: Protein of u 55.4 1.4E+02 0.003 28.6 10.5 43 82-126 249-292 (468)
257 KOG4555 TPR repeat-containing 55.3 1E+02 0.0022 24.3 7.7 76 111-189 53-145 (175)
258 PF06945 DUF1289: Protein of u 55.3 10 0.00022 24.3 1.9 36 245-280 7-47 (51)
259 COG4105 ComL DNA uptake lipopr 54.9 1.5E+02 0.0032 26.0 15.3 139 55-204 32-211 (254)
260 PF07079 DUF1347: Protein of u 54.2 2.1E+02 0.0045 27.5 14.1 118 25-155 48-185 (549)
261 KOG2047 mRNA splicing factor [ 53.4 2.5E+02 0.0054 28.2 14.0 121 25-158 140-269 (835)
262 TIGR02508 type_III_yscG type I 52.3 89 0.0019 23.4 6.6 87 38-141 20-106 (115)
263 KOG0543 FKBP-type peptidyl-pro 52.0 1.8E+02 0.0039 27.2 10.1 99 31-141 216-328 (397)
264 KOG2280 Vacuolar assembly/sort 52.0 84 0.0018 31.8 8.3 92 82-184 700-795 (829)
265 PF00515 TPR_1: Tetratricopept 52.0 40 0.00086 18.6 4.1 28 25-52 3-30 (34)
266 PRK07003 DNA polymerase III su 51.7 2.9E+02 0.0063 28.5 12.8 110 82-204 180-290 (830)
267 PF13431 TPR_17: Tetratricopep 51.4 19 0.0004 20.6 2.5 24 98-121 10-33 (34)
268 KOG0276 Vesicle coat complex C 51.3 97 0.0021 30.7 8.4 90 79-184 650-746 (794)
269 PF10602 RPN7: 26S proteasome 50.7 1.3E+02 0.0029 24.5 8.4 66 102-188 37-102 (177)
270 PF07079 DUF1347: Protein of u 50.5 2.4E+02 0.0051 27.1 11.8 116 79-199 19-172 (549)
271 PF10300 DUF3808: Protein of u 50.5 2.4E+02 0.0051 27.1 14.8 18 111-128 315-332 (468)
272 COG1675 TFA1 Transcription ini 50.1 16 0.00034 30.0 2.7 40 248-288 129-168 (176)
273 PF14803 Nudix_N_2: Nudix N-te 49.4 2.7 5.9E-05 24.5 -1.3 21 253-273 2-22 (34)
274 PLN02789 farnesyltranstransfer 49.3 2E+02 0.0044 26.0 18.0 27 25-51 39-65 (320)
275 KOG2297 Predicted translation 49.3 2.1E+02 0.0045 26.0 10.3 51 126-178 281-340 (412)
276 PF12029 DUF3516: Domain of un 49.2 19 0.0004 33.9 3.3 21 77-97 91-111 (461)
277 PRK10866 outer membrane biogen 48.5 1.8E+02 0.0039 25.1 18.9 81 21-112 31-115 (243)
278 KOG0624 dsRNA-activated protei 47.8 2.3E+02 0.005 26.2 15.3 155 31-194 46-256 (504)
279 PF14689 SPOB_a: Sensor_kinase 47.6 25 0.00054 23.4 3.0 45 82-128 6-50 (62)
280 KOG2114 Vacuolar assembly/sort 47.6 1.6E+02 0.0035 30.3 9.6 100 82-186 413-517 (933)
281 PF01475 FUR: Ferric uptake re 47.4 86 0.0019 23.5 6.4 42 163-204 11-53 (120)
282 KOG3060 Uncharacterized conser 47.3 2E+02 0.0044 25.3 15.3 145 36-195 25-188 (289)
283 KOG4521 Nuclear pore complex, 46.0 4.2E+02 0.0091 28.7 15.5 31 248-278 1185-1218(1480)
284 PF10083 DUF2321: Uncharacteri 45.9 16 0.00035 29.2 2.1 36 248-283 65-115 (158)
285 PF11846 DUF3366: Domain of un 45.5 1.2E+02 0.0026 24.9 7.5 45 82-128 127-171 (193)
286 PRK08691 DNA polymerase III su 45.3 3.5E+02 0.0076 27.5 11.6 85 40-136 181-279 (709)
287 COG4455 ImpE Protein of avirul 45.0 82 0.0018 27.1 6.2 65 79-146 14-81 (273)
288 PRK14136 recX recombination re 44.8 2.2E+02 0.0047 25.7 9.1 92 15-138 154-245 (309)
289 COG5108 RPO41 Mitochondrial DN 43.8 2.4E+02 0.0052 28.5 9.9 81 28-113 33-115 (1117)
290 COG3898 Uncharacterized membra 43.6 2.9E+02 0.0063 26.1 15.9 169 19-193 182-397 (531)
291 cd00280 TRFH Telomeric Repeat 43.5 1.9E+02 0.0042 24.1 8.9 91 82-184 85-182 (200)
292 PRK14958 DNA polymerase III su 43.5 3.2E+02 0.0069 26.6 11.3 79 48-138 190-281 (509)
293 PRK14952 DNA polymerase III su 43.2 3.5E+02 0.0075 26.9 12.6 99 83-193 180-279 (584)
294 PF13934 ELYS: Nuclear pore co 42.9 2.1E+02 0.0046 24.4 10.8 81 60-158 78-161 (226)
295 PF06107 DUF951: Bacterial pro 42.7 14 0.00029 24.3 1.0 26 237-262 17-42 (57)
296 PF04184 ST7: ST7 protein; In 42.7 93 0.002 30.0 6.8 132 19-152 196-346 (539)
297 KOG1127 TPR repeat-containing 42.5 4.5E+02 0.0097 28.0 12.5 135 39-186 474-657 (1238)
298 KOG0935 Clathrin adaptor compl 42.3 23 0.00051 26.9 2.4 30 264-293 21-51 (143)
299 PRK13341 recombination factor 41.8 3.4E+02 0.0074 27.7 11.2 109 83-199 171-298 (725)
300 PF14689 SPOB_a: Sensor_kinase 41.5 43 0.00093 22.2 3.4 25 163-187 27-51 (62)
301 PF15496 DUF4646: Domain of un 41.2 22 0.00047 27.4 2.2 25 258-282 39-63 (123)
302 COG1729 Uncharacterized protei 41.1 2.5E+02 0.0055 24.7 10.4 104 60-197 144-251 (262)
303 PF10366 Vps39_1: Vacuolar sor 40.8 1.1E+02 0.0024 22.8 5.9 27 25-51 41-67 (108)
304 PF13512 TPR_18: Tetratricopep 40.8 1.8E+02 0.0039 23.0 10.1 86 19-115 7-96 (142)
305 PF09205 DUF1955: Domain of un 40.7 1.8E+02 0.004 23.0 11.9 132 81-224 17-148 (161)
306 PRK14963 DNA polymerase III su 40.4 3.5E+02 0.0077 26.2 12.4 100 82-195 177-277 (504)
307 COG1729 Uncharacterized protei 39.7 2.6E+02 0.0057 24.6 12.1 92 25-128 144-242 (262)
308 PF09670 Cas_Cas02710: CRISPR- 39.3 3.2E+02 0.0069 25.4 11.3 46 82-128 147-196 (379)
309 TIGR03504 FimV_Cterm FimV C-te 39.0 77 0.0017 19.5 4.0 26 29-54 5-30 (44)
310 PF10764 Gin: Inhibitor of sig 38.8 6.8 0.00015 24.6 -0.8 31 248-278 15-45 (46)
311 TIGR02508 type_III_yscG type I 38.8 1.7E+02 0.0036 22.0 7.4 59 81-145 20-78 (115)
312 KOG0991 Replication factor C, 38.8 1.9E+02 0.0041 25.3 7.5 48 55-112 236-283 (333)
313 COG4003 Uncharacterized protei 38.5 1E+02 0.0022 22.0 4.9 37 164-201 36-72 (98)
314 PRK05563 DNA polymerase III su 38.2 4E+02 0.0087 26.2 12.2 98 83-193 181-279 (559)
315 TIGR02561 HrpB1_HrpK type III 38.2 2.1E+02 0.0045 22.9 12.0 94 82-186 26-120 (153)
316 PF09613 HrpB1_HrpK: Bacterial 37.7 2.2E+02 0.0047 23.0 11.8 105 21-139 5-114 (160)
317 PRK15331 chaperone protein Sic 37.6 2.2E+02 0.0049 23.1 11.5 88 59-158 39-126 (165)
318 KOG4648 Uncharacterized conser 37.6 1.1E+02 0.0025 28.1 6.3 73 110-185 106-184 (536)
319 KOG3060 Uncharacterized conser 37.0 3E+02 0.0064 24.3 15.2 121 25-158 54-175 (289)
320 PF08311 Mad3_BUB1_I: Mad3/BUB 36.8 1.2E+02 0.0025 23.3 5.7 43 84-126 81-124 (126)
321 COG2987 HutU Urocanate hydrata 36.6 30 0.00064 32.7 2.6 59 36-115 216-278 (561)
322 PF09868 DUF2095: Uncharacteri 36.6 1.9E+02 0.0041 22.0 6.4 39 164-203 66-104 (128)
323 PF13174 TPR_6: Tetratricopept 36.1 34 0.00073 18.5 2.0 23 30-52 7-29 (33)
324 PRK13342 recombination factor 35.6 3.7E+02 0.0081 25.1 10.1 98 104-204 230-332 (413)
325 PRK14951 DNA polymerase III su 35.5 4.7E+02 0.01 26.2 12.9 99 83-194 186-285 (618)
326 PF09477 Type_III_YscG: Bacter 35.4 2E+02 0.0042 21.8 7.5 59 81-145 21-79 (116)
327 COG3313 Predicted Fe-S protein 35.2 32 0.0007 23.8 2.0 39 243-281 11-53 (74)
328 COG2812 DnaX DNA polymerase II 35.2 2.8E+02 0.0061 27.0 9.0 88 38-139 179-282 (515)
329 PF03745 DUF309: Domain of unk 35.1 1.4E+02 0.0029 19.9 6.8 54 62-124 4-62 (62)
330 PRK14953 DNA polymerase III su 35.0 4.2E+02 0.0092 25.5 11.4 98 93-204 192-289 (486)
331 COG4306 Uncharacterized protei 34.7 39 0.00084 26.0 2.5 33 250-282 67-114 (160)
332 PF07719 TPR_2: Tetratricopept 34.2 81 0.0018 17.0 4.1 27 25-51 3-29 (34)
333 PF13181 TPR_8: Tetratricopept 34.1 83 0.0018 17.1 4.2 27 25-51 3-29 (34)
334 TIGR01228 hutU urocanate hydra 34.1 33 0.00072 32.8 2.5 66 36-122 207-277 (545)
335 PRK14950 DNA polymerase III su 34.0 4.7E+02 0.01 25.8 12.4 97 85-194 184-281 (585)
336 COG4481 Uncharacterized protei 33.6 65 0.0014 20.9 3.0 38 237-277 20-57 (60)
337 PF08631 SPO22: Meiosis protei 33.6 3.3E+02 0.0071 23.8 15.5 157 33-195 3-193 (278)
338 PRK14951 DNA polymerase III su 33.3 5.1E+02 0.011 25.9 11.1 78 48-137 195-285 (618)
339 PRK05414 urocanate hydratase; 32.8 36 0.00078 32.7 2.6 66 36-122 216-286 (556)
340 PF08542 Rep_fac_C: Replicatio 32.4 1.4E+02 0.003 20.8 5.2 49 20-70 2-50 (89)
341 PF08542 Rep_fac_C: Replicatio 32.3 77 0.0017 22.2 3.8 49 56-114 3-51 (89)
342 KOG0687 26S proteasome regulat 31.7 4.1E+02 0.0089 24.4 9.2 94 25-128 106-208 (393)
343 TIGR01206 lysW lysine biosynth 31.6 39 0.00084 21.9 1.8 17 252-268 23-39 (54)
344 KOG0159 Cytochrome P450 CYP11/ 31.5 5E+02 0.011 25.3 10.6 45 82-128 314-358 (519)
345 PF05664 DUF810: Protein of un 31.2 4.1E+02 0.0088 26.9 9.7 87 52-142 211-307 (677)
346 KOG1174 Anaphase-promoting com 30.2 4.9E+02 0.011 24.8 15.1 70 82-156 420-490 (564)
347 KOG2908 26S proteasome regulat 30.1 4.4E+02 0.0096 24.3 10.7 93 18-119 70-175 (380)
348 PRK07003 DNA polymerase III su 29.8 6.5E+02 0.014 26.1 10.9 84 41-136 182-279 (830)
349 PF03943 TAP_C: TAP C-terminal 29.5 10 0.00023 24.2 -1.1 23 37-59 27-50 (51)
350 PF04097 Nic96: Nup93/Nic96; 29.4 5.7E+02 0.012 25.4 10.5 83 31-128 266-354 (613)
351 PLN02789 farnesyltranstransfer 29.2 4.3E+02 0.0093 23.8 19.2 45 83-128 125-169 (320)
352 KOG4567 GTPase-activating prot 29.2 3E+02 0.0065 25.0 7.5 43 44-94 264-306 (370)
353 cd08326 CARD_CASP9 Caspase act 29.1 2.1E+02 0.0046 20.2 6.3 61 85-154 18-78 (84)
354 PF13281 DUF4071: Domain of un 29.0 4.8E+02 0.01 24.3 10.2 66 82-148 157-228 (374)
355 PF10579 Rapsyn_N: Rapsyn N-te 28.9 1.8E+02 0.0039 20.6 4.9 42 82-123 22-65 (80)
356 cd08819 CARD_MDA5_2 Caspase ac 28.6 2.3E+02 0.0049 20.4 7.8 66 84-156 20-85 (88)
357 PF09477 Type_III_YscG: Bacter 28.0 2.7E+02 0.0058 21.1 7.6 90 35-141 18-107 (116)
358 PHA02743 Viral ankyrin protein 28.0 2.9E+02 0.0062 21.9 6.9 85 30-124 24-114 (166)
359 PF09454 Vps23_core: Vps23 cor 27.8 1.8E+02 0.004 19.5 4.7 45 21-66 6-50 (65)
360 PF13929 mRNA_stabil: mRNA sta 27.6 4.5E+02 0.0097 23.5 9.6 106 25-139 166-280 (292)
361 PF14853 Fis1_TPR_C: Fis1 C-te 27.3 1.7E+02 0.0038 18.7 4.5 36 167-204 9-44 (53)
362 PF13248 zf-ribbon_3: zinc-rib 27.1 26 0.00057 18.8 0.4 12 250-261 15-26 (26)
363 PF12793 SgrR_N: Sugar transpo 26.3 2.9E+02 0.0062 20.9 7.6 62 55-126 16-95 (115)
364 COG3947 Response regulator con 25.6 4.1E+02 0.0089 24.0 7.6 54 103-158 281-334 (361)
365 PRK14956 DNA polymerase III su 25.3 6.3E+02 0.014 24.4 9.6 77 51-138 195-284 (484)
366 KOG2063 Vacuolar assembly/sort 24.7 5.4E+02 0.012 26.9 9.4 120 25-151 506-640 (877)
367 PF11846 DUF3366: Domain of un 24.4 2.1E+02 0.0046 23.3 5.6 52 105-156 112-163 (193)
368 PRK06645 DNA polymerase III su 24.3 6.7E+02 0.014 24.4 12.9 103 82-195 189-293 (507)
369 KOG1920 IkappaB kinase complex 24.2 4.8E+02 0.01 28.2 8.9 17 267-283 1162-1178(1265)
370 PHA02875 ankyrin repeat protei 24.1 4.2E+02 0.009 24.4 8.2 42 27-72 36-80 (413)
371 PF10475 DUF2450: Protein of u 23.6 4.5E+02 0.0097 23.2 7.9 22 29-50 133-154 (291)
372 COG5108 RPO41 Mitochondrial DN 23.3 4.2E+02 0.009 26.9 7.8 79 63-149 33-115 (1117)
373 PF10892 DUF2688: Protein of u 23.3 69 0.0015 20.9 1.8 20 251-278 38-57 (60)
374 PRK14971 DNA polymerase III su 23.1 7.6E+02 0.017 24.6 12.8 88 93-193 194-281 (614)
375 PRK11639 zinc uptake transcrip 23.1 3.3E+02 0.0072 22.0 6.4 60 93-154 18-77 (169)
376 PF12926 MOZART2: Mitotic-spin 23.1 3E+02 0.0064 19.9 8.5 42 87-128 29-70 (88)
377 PRK09857 putative transposase; 22.7 4.2E+02 0.0092 23.6 7.5 89 37-137 186-275 (292)
378 PF13878 zf-C2H2_3: zinc-finge 22.6 47 0.001 20.1 1.0 21 252-272 14-34 (41)
379 TIGR02710 CRISPR-associated pr 22.5 6.4E+02 0.014 23.5 11.4 48 81-128 145-198 (380)
380 PF13525 YfiO: Outer membrane 22.3 4.5E+02 0.0097 21.6 13.8 137 25-188 8-170 (203)
381 PF06221 zf-C2HC5: Putative zi 22.1 77 0.0017 20.8 1.9 22 251-276 35-56 (57)
382 PRK07764 DNA polymerase III su 21.9 5.5E+02 0.012 26.7 8.9 75 50-136 193-281 (824)
383 PF11201 DUF2982: Protein of u 21.8 82 0.0018 25.2 2.4 41 238-278 15-59 (152)
384 COG5030 APS2 Clathrin adaptor 21.7 77 0.0017 24.9 2.2 29 266-294 23-52 (152)
385 PRK13342 recombination factor 21.7 6.6E+02 0.014 23.4 12.3 111 82-200 153-271 (413)
386 smart00028 TPR Tetratricopepti 21.7 1.2E+02 0.0026 14.8 3.4 27 25-51 3-29 (34)
387 PLN03025 replication factor C 21.3 5.9E+02 0.013 22.7 10.9 84 40-135 162-257 (319)
388 KOG4555 TPR repeat-containing 21.2 4.2E+02 0.0092 21.0 9.9 88 32-128 52-142 (175)
389 PRK15331 chaperone protein Sic 21.2 4.6E+02 0.0099 21.3 7.3 99 19-128 31-132 (165)
390 COG3825 Uncharacterized protei 21.0 3.1E+02 0.0066 24.9 6.0 60 43-111 3-62 (393)
391 PF14840 DNA_pol3_delt_C: Proc 21.0 1E+02 0.0022 23.7 2.8 29 35-63 9-37 (125)
392 PF05944 Phage_term_smal: Phag 20.9 1.9E+02 0.0042 22.5 4.3 38 20-57 45-83 (132)
393 PF13005 zf-IS66: zinc-finger 20.9 72 0.0016 19.5 1.6 15 251-265 2-16 (47)
394 PF13453 zf-TFIIB: Transcripti 20.8 91 0.002 18.6 2.0 20 253-276 21-40 (41)
395 PF02607 B12-binding_2: B12 bi 20.5 1.8E+02 0.0039 19.7 3.8 32 82-113 17-48 (79)
396 PF07443 HARP: HepA-related pr 20.4 69 0.0015 20.9 1.4 28 118-146 9-36 (55)
397 PRK14960 DNA polymerase III su 20.3 9.3E+02 0.02 24.5 12.9 100 82-194 179-279 (702)
398 COG5469 Predicted metal-bindin 20.1 93 0.002 24.3 2.3 40 252-291 21-61 (143)
399 PHA02874 ankyrin repeat protei 20.0 5.7E+02 0.012 23.7 8.3 14 29-42 38-51 (434)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=258.68 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-C--------------------------CCc
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-D--------------------------PSL 77 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~--------------------------~~~ 77 (295)
+||++|.+|++.|+.++|+.+|++|.+.|+.||..||+++|++|.+.+. + .+.
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~ 371 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHH
Confidence 9999999999999999999999999999999999999999997765543 1 023
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
++|.+++|.++|++|.+ ||.+|||+||.+|+++|+.++|+++|++|. ..|+.||.+||+++|.+|++.|++++|.
T Consensus 372 k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 372 KWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHH
Confidence 45556666666665543 555556666666666666666666666665 5555566666666666666555555555
Q ss_pred c--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH--------------------------
Q 048764 158 E--------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG-------------------------- 197 (295)
Q Consensus 158 ~--------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~-------------------------- 197 (295)
+ ..+|++||++|++.|++++|++++++| +..|+..+|
T Consensus 447 ~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~ 523 (697)
T PLN03081 447 EIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM 523 (697)
T ss_pred HHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC
Confidence 5 012555555555555555555555543 234444444
Q ss_pred --------HHHHHHHhccccCCccc-chhHHHHHHHhcCCc-cccCCCccccceEEeeee--------------------
Q 048764 198 --------KIIEDWFSGQKVNGVSC-DLGLVKNAVLKNGGG-WHGLGWIGQGKWVVKRGS-------------------- 247 (295)
Q Consensus 198 --------~~l~~~~~~~~~g~~~~-~~~~v~~~~~~~g~~-~~~~~w~~~~~w~~~~~~-------------------- 247 (295)
..+.+.|.. .++| ++..+++.|.+.|.. .+|.+|+..++.++.+..
T Consensus 524 ~p~~~~~y~~L~~~y~~----~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~ 599 (697)
T PLN03081 524 GPEKLNNYVVLLNLYNS----SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMK 599 (697)
T ss_pred CCCCCcchHHHHHHHHh----CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHH
Confidence 444444433 5678 477899999998875 688999999888877653
Q ss_pred -eCCCCCcCcCCCeeeEeeCChHHHHHHH
Q 048764 248 -VDESGKCCSCGNQLACVDIDDAETERFA 275 (295)
Q Consensus 248 -v~~~g~C~~c~~~l~~~~l~~~e~~~~~ 275 (295)
+...|+++. ......|++++|++..+
T Consensus 600 ~~~~~gy~~~--~~~~~~~~~~~~~~~~~ 626 (697)
T PLN03081 600 EISEYGYVAE--ENELLPDVDEDEEKVSG 626 (697)
T ss_pred HHHHcCCCCC--cchhhccccHHHHHHHH
Confidence 344677763 34445788888887653
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=4.9e-30 Score=260.05 Aligned_cols=183 Identities=14% Similarity=0.236 Sum_probs=140.5
Q ss_pred hhcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Q 048764 15 KRKTNPNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQML 93 (295)
Q Consensus 15 ~~~~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~ 93 (295)
.++.+..|+. +|+++|.+|++.|++++|+.+|++|.+.|+.||.+|||+||.+|.+.+. +++|.++|++|.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~--------~eeAl~lf~~M~ 534 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ--------VAKAFGAYGIMR 534 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC--------HHHHHHHHHHHH
Confidence 3455666665 8888888888888888888888888877888888888888885555442 778888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhh--cCCCCCcccHHHHHHHHHhcCCHHHhhc-------------
Q 048764 94 SNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNE--FNVVPRLRTYDPALFCFCENLEAQKAYE------------- 158 (295)
Q Consensus 94 ~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~--~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------- 158 (295)
+.|+.||.+|||+||.+|++.|++++|+++|++|. . .|+.||.+||++||.+|++.|++++|.+
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~-~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~ 613 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK-AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888886 4 5778888888888888888888887777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
...|++||.+|++.|++++|..+|++|...|+.|+..||..+...+..
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k 661 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH 661 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 134788888888888888888888888888888887788777776643
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.97 E-value=1.6e-29 Score=256.25 Aligned_cols=208 Identities=16% Similarity=0.195 Sum_probs=128.0
Q ss_pred hcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-C-------------------
Q 048764 16 RKTNPNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-D------------------- 74 (295)
Q Consensus 16 ~~~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~------------------- 74 (295)
.+.+..|+. ||+++|.+|++.|++++|+++|++|++.|+.||.+|||+||.+|.+.+. +
T Consensus 499 ~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD 578 (1060)
T PLN03218 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD 578 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 344556665 7777777777777777777777777777777777777777775554442 0
Q ss_pred ---------CCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 75 ---------PSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 75 ---------~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
.+.++|.+++|.++|++|.+.|+.||..+||+||.+|++.|++++|+++|++|. ..|+.||..||++||.
T Consensus 579 ~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~-~~Gv~PD~~TynsLI~ 657 (1060)
T PLN03218 579 HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVD 657 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHH
Confidence 011333355666666666666666666666666666666666666666666666 6666666666666666
Q ss_pred HHHhcCCHHHhhc-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCc
Q 048764 146 CFCENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGV 212 (295)
Q Consensus 146 ~~~~~g~~~~A~~-------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~ 212 (295)
+|++.|++++|.+ ...|++||.+|++.|++++|.++|++|...++.|+..+|+.++..|+. .+
T Consensus 658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k----~G 733 (1060)
T PLN03218 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE----GN 733 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----CC
Confidence 6666666666655 223666666666666666666666666666666666666666666633 22
Q ss_pred cc-chhHHHHHHHhcCC
Q 048764 213 SC-DLGLVKNAVLKNGG 228 (295)
Q Consensus 213 ~~-~~~~v~~~~~~~g~ 228 (295)
.+ ++..+.+.|...|.
T Consensus 734 ~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGL 750 (1060)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 32 23344444554444
No 4
>PLN03077 Protein ECB2; Provisional
Probab=99.97 E-value=4.2e-29 Score=252.94 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=139.1
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------------HHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------------EQEIT 163 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------------e~~y~ 163 (295)
.||.++||+||.+|+++|+.++|+++|++|. ..|+.||.+||+++|.+|++.|++++|.+ ..+|+
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMV-ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 4566778899999999999999999999999 99999999999999999999999999988 22499
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc------------------------------cccCCcc
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG------------------------------QKVNGVS 213 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~------------------------------~~~g~~~ 213 (295)
+|+++|++.|++++|.+++++|. ..|+..+|..|...+.. .++..++
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 99999999999999999999994 68999988876665432 1234567
Q ss_pred c-chhHHHHHHHhcCCc-cccCCCccccceEEeeee---------------------eCCCCCcCcCCCeeeEeeCChHH
Q 048764 214 C-DLGLVKNAVLKNGGG-WHGLGWIGQGKWVVKRGS---------------------VDESGKCCSCGNQLACVDIDDAE 270 (295)
Q Consensus 214 ~-~~~~v~~~~~~~g~~-~~~~~w~~~~~w~~~~~~---------------------v~~~g~C~~c~~~l~~~~l~~~e 270 (295)
| ++..+++.|.+.|.. .+|.+||+.+..++.+.. +...|+.+.... ..|.++||
T Consensus 707 ~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~---~~~~~~~~ 783 (857)
T PLN03077 707 WDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESS---SMDEIEVS 783 (857)
T ss_pred hHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcch---hccccHHH
Confidence 8 578999999998887 588999999998887754 344566553322 23667777
Q ss_pred HHHHH
Q 048764 271 TERFA 275 (295)
Q Consensus 271 ~~~~~ 275 (295)
++..+
T Consensus 784 k~~~~ 788 (857)
T PLN03077 784 KDDIF 788 (857)
T ss_pred HHHHH
Confidence 76653
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=236.84 Aligned_cols=177 Identities=11% Similarity=0.022 Sum_probs=162.8
Q ss_pred cCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 17 KTNPNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 17 ~~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
+.+..|+. +||+||++|++.|++++|..+|++|. .+|+++||+||.+|.+.+. .++|.++|++|.+.
T Consensus 252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~--------~~eA~~lf~~M~~~ 319 (697)
T PLN03081 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGY--------SEEALCLYYEMRDS 319 (697)
T ss_pred HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCC--------HHHHHHHHHHHHHc
Confidence 44566666 99999999999999999999999995 4688999999996666663 99999999999999
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------HHHHHHHH
Q 048764 96 NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------EQEITALL 166 (295)
Q Consensus 96 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------e~~y~~ll 166 (295)
|+.||..||+++|++|++.|++++|.+++..|. +.|+.||..+|++||++|++.|++++|.+ ..+||+||
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999 22399999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 167 KVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
.+|++.|+.++|.++|++|...|+.||..|+..+...+..
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888744
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.95 E-value=6.9e-27 Score=236.82 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=159.8
Q ss_pred CcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCC-------------------------
Q 048764 21 NPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATD------------------------- 74 (295)
Q Consensus 21 ~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~------------------------- 74 (295)
.|+. +||++|.+|++.|++++|+.+|++|+..|+.||.+||+++|++|...+.-
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 4555 99999999999999999999999999999999999999999877643210
Q ss_pred ---------------------------------CCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048764 75 ---------------------------------PSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAF 121 (295)
Q Consensus 75 ---------------------------------~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~ 121 (295)
.+.+.|..++|+++|.+|...|+.||.+||+++|.+|++.|+++.|.
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~ 308 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence 01245556777777777777777777777777777777777777777
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCC
Q 048764 122 ELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCV 192 (295)
Q Consensus 122 ~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p 192 (295)
+++..|. ..|+.||..+||+||.+|++.|++++|.+ ...||+||.+|++.|++++|.++|++|.+.++.|
T Consensus 309 ~l~~~~~-~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 309 EMHGYVV-KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHH-HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 7777777 77777888888888888888888888877 2239999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHhccccCCcccc-hhHHHHHHHhcCC
Q 048764 193 NEETGKIIEDWFSGQKVNGVSCD-LGLVKNAVLKNGG 228 (295)
Q Consensus 193 ~~~t~~~l~~~~~~~~~g~~~~~-~~~v~~~~~~~g~ 228 (295)
+..|+..+...+.. .+.++ +..+.+.+.+.|.
T Consensus 388 d~~t~~~ll~a~~~----~g~~~~a~~l~~~~~~~g~ 420 (857)
T PLN03077 388 DEITIASVLSACAC----LGDLDVGVKLHELAERKGL 420 (857)
T ss_pred CceeHHHHHHHHhc----cchHHHHHHHHHHHHHhCC
Confidence 99999998887744 22332 3445555555554
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.59 E-value=1.7e-15 Score=98.74 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
||+++||+||++|++.|++++|+++|++|. +.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~-~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK-KRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 99999999999999999986
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.46 E-value=1.5e-13 Score=89.45 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=45.6
Q ss_pred cHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 048764 22 PET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCS 69 (295)
Q Consensus 22 p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~ 69 (295)
|+. +||++|++|++.|++++|+++|++|++.|++||.+||++||++|.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 566 999999999999999999999999999999999999999999765
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=6.8e-12 Score=112.97 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=138.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 23 ~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
+.||.+||.+.||--..+.|.++|.+-.....+.+..+||.||.+-+-. ...++..+|.+..+.||..
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~------------~~K~Lv~EMisqkm~Pnl~ 274 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS------------VGKKLVAEMISQKMTPNLF 274 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh------------ccHHHHHHHHHhhcCCchH
Confidence 4499999999999999999999999999888999999999999954332 2368899999999999999
Q ss_pred HHHHHHHHHHcCCCHHH----HHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------------------
Q 048764 103 LVTSVARLAASKKDSDY----AFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------------------- 158 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~----A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-------------------- 158 (295)
|||+++...++.|+++. |.+++.+|+ .-||.|..-+|..+|.-+++.++..+...
T Consensus 275 TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 275 TFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999998765 478999999 99999999999999999999887644322
Q ss_pred -------------------------------------------HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 159 -------------------------------------------EQE-ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 159 -------------------------------------------e~~-y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
++- |.-++.+.|.....+.-+..++.|.-+-.-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 000 455666666666777777777777766667777
Q ss_pred hHHHHHHHHHhc
Q 048764 195 ETGKIIEDWFSG 206 (295)
Q Consensus 195 ~t~~~l~~~~~~ 206 (295)
.+...|.+....
T Consensus 434 ~~m~~~lrA~~v 445 (625)
T KOG4422|consen 434 QTMIHLLRALDV 445 (625)
T ss_pred hhHHHHHHHHhh
Confidence 776666554433
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.28 E-value=7.7e-10 Score=102.26 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
+++.++..|.+.|++++|+.+|+.+.+.+-.++. ..|..+...+...+ ++++|...|+++.+.. +.+
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~-p~~ 213 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG--------DLDAARALLKKALAAD-PQC 213 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHhHC-cCC
Confidence 5555555555555555555555555543322111 11222222222222 2777777777776643 233
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHHHHHHHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQEITALLKVS 169 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~y~~ll~~~ 169 (295)
..++..+...|.+.|++++|.++|+++. ..+-.+...+++.+..+|++.|+.++|.. ...+..+...+
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~ 292 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIEALERVE-EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 5566777777777888888888888777 44322223456777777888888877777 11256677778
Q ss_pred HhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 170 AGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
.+.|++++|..++.++... .|+..++..+...+
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~ 325 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYH 325 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHh
Confidence 8888888888888877664 57766666554444
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.18 E-value=1.6e-09 Score=100.20 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+.+.|++++|..+|+++.+.. +.+...+..+...+...+. +++|.++|+++.+.+......++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~p~~~~~~~ 252 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGD--------YAAAIEALERVEEQDPEYLSEVL 252 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHChhhHHHHH
Confidence 45667778899999999999999998753 3345566666674444442 99999999999875433335678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHHHHHHHHHHHh--
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQEITALLKVSAG-- 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~y~~ll~~~~~-- 171 (295)
+.++.+|...|++++|..+++.+. .. .|+...+..+...+.+.|+.++|.. ...++.++..+..
T Consensus 253 ~~l~~~~~~~g~~~~A~~~l~~~~-~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 253 PKLMECYQALGDEAEGLEFLRRAL-EE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 999999999999999999999998 54 5787788999999999999999998 2347777877765
Q ss_pred -cCCHHHHHHHHHHHHHcccCCChh
Q 048764 172 -TGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 172 -~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.|+.+++..++++|.+.++.|++.
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC
Confidence 568999999999999988888876
No 12
>PF12854 PPR_1: PPR repeat
Probab=99.14 E-value=6.1e-11 Score=70.39 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+|+.||.+|||+||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999999995
No 13
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=4.9e-09 Score=94.82 Aligned_cols=120 Identities=13% Similarity=0.138 Sum_probs=101.9
Q ss_pred CCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC
Q 048764 55 RLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV 133 (295)
Q Consensus 55 ~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi 133 (295)
+-...||.+||. +|.-.. .++|+++|++-.....+.+..+||.+|.+-+..-+ ..++.+|. ...+
T Consensus 204 PKT~et~s~mI~Gl~K~~~---------~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi-sqkm 269 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSS---------LERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI-SQKM 269 (625)
T ss_pred CCCchhHHHHHHHHHHHHh---------HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH-Hhhc
Confidence 456689999999 777766 99999999999998899999999999987765433 78999999 9999
Q ss_pred CCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 134 VPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 134 ~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
+||..|||++|++.++.|.++.| ...|.+++.+|++-|+.|+-.++..|+..|+.
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~a------------------r~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDA------------------RKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHH------------------HHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 99999999988888888877654 23467888999999999999999888888865
No 14
>PF12854 PPR_1: PPR repeat
Probab=98.76 E-value=9.3e-09 Score=60.92 Aligned_cols=33 Identities=12% Similarity=0.288 Sum_probs=30.4
Q ss_pred CCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 18 TNPNPET-NFLISLQSCTKSKDLATAISLYESAL 50 (295)
Q Consensus 18 ~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~ 50 (295)
++..|+. |||+||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4678887 99999999999999999999999984
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.66 E-value=6e-06 Score=83.27 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+...+.+.|+.++|..+|+++.+.+ +.+...+..+...+...+ .+++|..+++.+... .+.+..+|
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~-~~~~~~~~ 604 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG--------QLKKALAILNEAADA-APDSPEAW 604 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC--------CHHHHHHHHHHHHHc-CCCCHHHH
Confidence 34444444444444444444444443322 223333333333222222 266666666666542 23455666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...|...|++++|...|+.+. ... ..+...+..+...|.+.|+.++|.. ...+..+...+...
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 682 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLL-ALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA 682 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 666666666666666666666665 332 2234455566666666666666665 11255556666666
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
|++++|..+++.+...
T Consensus 683 ~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 683 KRTESAKKIAKSLQKQ 698 (899)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 6666666666666554
No 16
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.62 E-value=4.5e-08 Score=57.82 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
+|||+||++|++.|++++|.++|++|. ..|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~-~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEML-ERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCC
Confidence 489999999999999999999999999 99999984
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.61 E-value=8e-06 Score=82.36 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
.++|.+.++.+.+.. +.+..+++.+...|...|+.++|..+|+++. ... .++...++.+...+.+.|+ .+|..
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVV-KKA-PDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 444555555444422 2344555555555555555555555555555 333 2344455555555555555 44444
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHH
Q 048764 159 ---------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 203 (295)
Q Consensus 159 ---------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~ 203 (295)
...+..+-..+...|++++|..+++++.+.+-. ++.++..+...
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 880 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALA 880 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHH
Confidence 111344555566666677777777666664422 44444333333
No 18
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.56 E-value=1e-07 Score=56.29 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL 58 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~ 58 (295)
+||++|.+|++.|++++|.++|++|++.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999984
No 19
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.54 E-value=1.6e-06 Score=64.97 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
|=...|..|...+++.....+|+.+++.|+ .|++.+|+.+|....+...+...-+..+-..+.+|++|...+++||..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445578888999999999999999999999 9999999999994444443333334457788999999999999999999
Q ss_pred HHHHHHHHHc
Q 048764 104 VTSVARLAAS 113 (295)
Q Consensus 104 y~~li~~~~~ 113 (295)
||.+|..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 20
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.51 E-value=1.3e-07 Score=55.69 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
.|||++|++|++.|+++.|+++|++|+ ..|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~-~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMK-EQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC
Confidence 699999999999999999999999999 999998
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.50 E-value=8.3e-05 Score=62.36 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+...|...|++++|...|+++.+.. +.+...+..+...+...+. +++|.+.|++..+.. +.+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~ 102 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGE--------LEKAEDSFRRALTLN-PNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CCCHHHH
Confidence 77888899999999999999999987653 3345666666665554442 999999999988754 3456788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
..+...+...|++++|..+|+... .....| ....+..+-..+...|+.++|.. ...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAI-EDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-hccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 888999999999999999999998 533223 33456677788899999999988 1226677788889
Q ss_pred cCCHHHHHHHHHHHHHc
Q 048764 172 TGRVEKVYQYLQKLRST 188 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~~ 188 (295)
.|++++|..++.+....
T Consensus 182 ~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT 198 (234)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998876
No 22
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.46 E-value=5e-07 Score=88.21 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh-HHHHHHHHHhccccCCcccchhHHHHHHHhcCCc
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE-TGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGG 229 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~-t~~~l~~~~~~~~~g~~~~~~~~v~~~~~~~g~~ 229 (295)
|.+++++-..+|+.+-|..++.+|++.|....+. .|.+|.. . +...-.+.|.+.+...|.-
T Consensus 207 l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~----~~~q~~e~vlrgmqe~gv~ 268 (1088)
T KOG4318|consen 207 LHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---I----NAAQVFEFVLRGMQEKGVQ 268 (1088)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---C----ccchHHHHHHHHHHHhcCC
Confidence 7888888888999999999999999999888775 4555422 0 1111234566666666543
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.41 E-value=5.1e-07 Score=53.06 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRL 56 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p 56 (295)
+||++|.+|++.|+++.|+.+|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999999999999988
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.39 E-value=1.2e-06 Score=85.64 Aligned_cols=170 Identities=12% Similarity=0.044 Sum_probs=109.3
Q ss_pred hcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------------CCCHHhHHHHHHHHHc
Q 048764 16 RKTNPNPET-NFLISLQSCTKSKDLATAISLYESALSLNF------------------------RLSLHHFNALLYLCSN 70 (295)
Q Consensus 16 ~~~~~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~------------------------~pd~~ty~~ll~~~~~ 70 (295)
...+.-|+. ||.++|.-||..|+++.|- +|..|+-... .|...||+.|+.+|+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~ 95 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRI 95 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHh
Confidence 455677776 9999999999999999998 7777753322 4556677777777766
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHh----CCC-----------------CCCHHHHHHHHHHHHcCCCHHHHHHHH-----
Q 048764 71 SATDPSLKDSALRHGFRVFDQMLS----NNV-----------------IPNEALVTSVARLAASKKDSDYAFELI----- 124 (295)
Q Consensus 71 ~~~~~~~~~~~~~~a~~lf~~M~~----~g~-----------------~pd~~ty~~li~~~~~~g~~~~A~~l~----- 124 (295)
.++-. .++...+.+..+.. .|+ .||..+ +|....-.|.++.++.++
T Consensus 96 hGDli-----~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 96 HGDLI-----LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred ccchH-----HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHHHHhhCCc
Confidence 54210 13334432222211 232 233322 222222233333333332
Q ss_pred -----------H-------------HhhhhcCC-CCCcccHHHHHHHHHhcCCHHHhhc---HH----------HHHHHH
Q 048764 125 -----------K-------------RMNNEFNV-VPRLRTYDPALFCFCENLEAQKAYE---EQ----------EITALL 166 (295)
Q Consensus 125 -----------~-------------~M~~~~gi-~P~~~ty~~ll~~~~~~g~~~~A~~---e~----------~y~~ll 166 (295)
+ .|. +.+. .|+..+|.+++++-.-+|+++.|.. ++ .|-.||
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~~c-ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLNMC-KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHHHH-HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 1 122 2222 4999999999999999999999988 22 256665
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcccCCChhHHH
Q 048764 167 KVSAGTGRVEKVYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 198 (295)
-+ .++..-+..+++.|++.|+.|+.+|+.
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhH
Confidence 55 888889999999999999999999874
No 25
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.27 E-value=7.8e-07 Score=51.03 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNV 133 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi 133 (295)
+|||+||++|++.|++++|.++|++|. +.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~-~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR-ERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh-HCcC
Confidence 489999999999999999999999999 8775
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.23 E-value=0.00025 Score=59.39 Aligned_cols=152 Identities=14% Similarity=0.129 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~~t 103 (295)
.+..+...|...|++++|...|++..+.. +.+...+..+-..+...+. +++|...|+....... +.+...
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~ 137 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGK--------YEQAMQQFEQAIEDPLYPQPARS 137 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhccccccchHH
Confidence 77888889999999999999999988764 3344555555554444332 9999999999987432 234556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
+..+...+...|++++|...|++.. ... ..+...+..+...+...|+.++|.. ...+..+...+..
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (234)
T TIGR02521 138 LENAGLCALKAGDFDKAEKYLTRAL-QID-PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7778888999999999999999987 543 2245578888899999999999987 1225566777778
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.|+.++|..+.+.+..
T Consensus 216 ~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 216 LGDVAAAQRYGAQLQK 231 (234)
T ss_pred HhhHHHHHHHHHHHHh
Confidence 8999999888887754
No 27
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=2.3e-06 Score=49.02 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF 54 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~ 54 (295)
|||++|++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 799999999999999999999999999885
No 28
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.13 E-value=3e-05 Score=72.14 Aligned_cols=119 Identities=13% Similarity=0.064 Sum_probs=104.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 23 ETNFLISLQSCTKSKDLATAISLYESALSL--NFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 23 ~~t~~~li~~~~~~g~~~~A~~lf~~m~~~--g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
......+++.+....+++.+..++...+.. ....-..|..++|+.|-..+. .+.++.++..=...|+-||
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~--------~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGA--------EDELLELLKNRLQYGIFPD 137 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCC--------HHHHHHHHhChhhcccCCC
Confidence 348888999999999999999999998866 333334566799998877763 8999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCEN 150 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~ 150 (295)
..|||.||+.+.+.|++..|.+++.+|. ..+.-.+..|+.-.+.+|.+-
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~-lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMM-LQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHH-HhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999 888888889999999988877
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.11 E-value=0.00068 Score=67.40 Aligned_cols=119 Identities=9% Similarity=-0.018 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+...|++++|...+..+....-.+ ...+..++.+...++ +++|..+++.+......++...+
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~~~l~~~g~---------~~eA~~~~~~~l~~~~~~~~~~~ 215 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATCLSFLNKSR---------LPEDHDLARALLPFFALERQESA 215 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHcCC---------HHHHHHHHHHHHhcCCCcchhHH
Confidence 55555666666666666666666554332111 122222222333333 56666666665554333344444
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQK 155 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~ 155 (295)
..+...+...|++++|...|+... ... ..+...+..+-..|...|+.++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al-~~~-p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESAL-ARG-LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHcCCchh
Confidence 444555556666666666666655 332 1123334445555555555543
No 30
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.10 E-value=2.7e-05 Score=58.47 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=65.7
Q ss_pred HHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHhhhhc
Q 048764 62 NALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNEALVTSVARLAASKK--------DSDYAFELIKRMNNEF 131 (295)
Q Consensus 62 ~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~~ty~~li~~~~~~g--------~~~~A~~l~~~M~~~~ 131 (295)
..-|. .+..++ +.....+|+.++..|+ .|++.+||.++++.++.. ++-..+.+++.|. ..
T Consensus 29 i~~I~~~~~~~d---------~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~ 98 (120)
T PF08579_consen 29 IDNINSCFENED---------YNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SN 98 (120)
T ss_pred HHHHHHHHhhcc---------hHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-Hh
Confidence 33455 556655 9999999999999999 999999999999998742 3446788999999 99
Q ss_pred CCCCCcccHHHHHHHHHh
Q 048764 132 NVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 132 gi~P~~~ty~~ll~~~~~ 149 (295)
+++|+..||+.+|..+.+
T Consensus 99 ~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 99 KLKPNDETYNIVLGSLLK 116 (120)
T ss_pred ccCCcHHHHHHHHHHHHH
Confidence 999999999999988765
No 31
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.99 E-value=3.7e-05 Score=64.52 Aligned_cols=98 Identities=12% Similarity=0.145 Sum_probs=81.4
Q ss_pred CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC----------------CCHH
Q 048764 55 RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK----------------KDSD 118 (295)
Q Consensus 55 ~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~----------------g~~~ 118 (295)
.-|..+|..+|..+..... .+.|+++-....+..|.+.|+.-|..+|+.||+.+=+. .+-+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~---~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDV---RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred cccHHHHHHHHHHHHhcCC---CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 5577889999996655431 45678999999999999999999999999999988762 2347
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 119 YAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 119 ~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
-|++++++|. ..||.||..|+..|++.|.+.+..-..
T Consensus 121 c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p~~K 157 (228)
T PF06239_consen 121 CAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHPMKK 157 (228)
T ss_pred HHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHHHHH
Confidence 7899999999 999999999999999998887765443
No 32
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.96 E-value=0.00013 Score=61.23 Aligned_cols=93 Identities=14% Similarity=0.198 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCC--------cchHHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKS-----KDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPS--------LKDSALRHGFRVFDQ 91 (295)
Q Consensus 25 t~~~li~~~~~~-----g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~--------~~~~~~~~a~~lf~~ 91 (295)
+|..+|+.|.+. |.++=....+..|.+-|+.-|..+|+.||+.+=++...+. -...+.+-|.+|+++
T Consensus 49 ~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~q 128 (228)
T PF06239_consen 49 TFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQ 128 (228)
T ss_pred HHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHH
Confidence 888899999865 6788888889999999999999999999998877775331 122336779999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCH
Q 048764 92 MLSNNVIPNEALVTSVARLAASKKDS 117 (295)
Q Consensus 92 M~~~g~~pd~~ty~~li~~~~~~g~~ 117 (295)
|...||.||..|+..|++.+++.+.+
T Consensus 129 ME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 129 MENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999998865
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.95 E-value=3.1e-05 Score=68.52 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc-
Q 048764 82 LRHGFRVFDQMLSN-NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~-g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~- 158 (295)
++++..+++..... ..++|...|..+...+.+.|+.++|++++++.. .. .|+ ....+.++..+...|+.+++..
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al-~~--~P~~~~~~~~l~~~li~~~~~~~~~~~ 202 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL-EL--DPDDPDARNALAWLLIDMGDYDEAREA 202 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH-HH---TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 55555555554331 223444455555555555555555555555544 22 233 3334445555555555544333
Q ss_pred -------HH---H-HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -------EQ---E-ITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -------e~---~-y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.+ . +..+-.++...|+.++|+.++.+...
T Consensus 203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 00 0 34444555555555555555555443
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.89 E-value=0.00026 Score=62.62 Aligned_cols=151 Identities=19% Similarity=0.140 Sum_probs=97.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN-FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ 102 (295)
.+..+|..+.+.++++++..+++.+.... .+.|...|..+-..+.+.+ ..++|.++|++..+. .| |..
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G--------~~~~A~~~~~~al~~--~P~~~~ 181 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG--------DPDKALRDYRKALEL--DPDDPD 181 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC--------HHHHHHHHHHHHHHH---TT-HH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHc--CCCCHH
Confidence 77888999999999999999999987543 4556677777777666655 399999999999874 35 578
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH-HHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE-ITALLKVSA 170 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~-y~~ll~~~~ 170 (295)
..+.++..+...|+.+++.+++.... ... ..|...+..+-.+|...|+.++|+. .+. ...+-+++.
T Consensus 182 ~~~~l~~~li~~~~~~~~~~~l~~~~-~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 182 ARNALAWLLIDMGDYDEAREALKRLL-KAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALE 259 (280)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH-HH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHH-HHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999987 443 4566677899999999999999999 122 567778899
Q ss_pred hcCCHHHHHHHHHHHHH
Q 048764 171 GTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~ 187 (295)
..|+.++|..+..+...
T Consensus 260 ~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 260 QAGRKDEALRLRRQALR 276 (280)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 99999999998877543
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.88 E-value=0.002 Score=63.57 Aligned_cols=150 Identities=7% Similarity=-0.044 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|+.+-..+...|++++|+..|++..+. .|+ ...|..+-..+...+. +++|...|+...+.. +-+..+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~--------~~eA~~~~~~al~~~-p~~~~~ 401 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGD--------PDKAEEDFDKALKLN-SEDPDI 401 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhC-CCCHHH
Confidence 6677777777889999999999887764 343 4455555554444332 889999999887643 345678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
|..+...|...|++++|...|++.. .. .|+ ...|..+-..+.+.|+.++|.. ...|+.+-..+.
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal-~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSI-DL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 8888888889999999999998877 43 354 4556667778888899888888 122677778888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048764 171 GTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~ 188 (295)
..|++++|...+++-...
T Consensus 479 ~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HccCHHHHHHHHHHHHhc
Confidence 899999999999887664
No 36
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.85 E-value=0.002 Score=64.03 Aligned_cols=46 Identities=11% Similarity=-0.055 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+++|...|+...+.. +.+...+..+...+...|++++|...++.+.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 555555555554421 1223444555555555555555555555443
No 37
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.79 E-value=0.0056 Score=60.45 Aligned_cols=165 Identities=10% Similarity=0.016 Sum_probs=118.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|+++.+.. +-+...|..+-.++...+. +++|...|++..+.. +.+...|
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGE--------FAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-ccCHHHH
Confidence 77788888889999999999999987653 3455667776665544442 999999999987743 2356777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------HHH-----------HHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------EQE-----------ITA 164 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e~~-----------y~~ 164 (295)
..+...+.+.|++++|+.+|+... .. .|+ ...|+.+-..+...|+.++|.. .+. ++.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al-~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCK-KN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 888888999999999999999887 43 354 5678888888999999999987 111 122
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcccCCChh-HHHHHHHHH
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE-TGKIIEDWF 204 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~-t~~~l~~~~ 204 (295)
.+..+...|++++|..++.+.... .|+.. .+..+...+
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 222334468999999999986653 35443 344444444
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.66 E-value=0.0061 Score=63.07 Aligned_cols=149 Identities=10% Similarity=0.031 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.+..+...+.+.|++++|...|++..+.. +.+...+..+... ...++ +++|...|++..+. .|+...
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr---------~~eAl~~~~~AL~l--~P~~~a 611 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ---------PELALNDLTRSLNI--APSANA 611 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHh--CCCHHH
Confidence 34444455566666666666666665543 1121222221111 11233 78888888877653 366778
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSA 170 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~ 170 (295)
|..+-..+.+.|++++|...|+... .. .|+.. .++.+-..+...|+.++|.. .| .+..+-.++.
T Consensus 612 ~~~LA~~l~~lG~~deA~~~l~~AL-~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 612 YVARATIYRQRHNVPAAVSDLRAAL-EL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888888888888888888888877 43 45544 44555557788888888876 11 2566777778
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048764 171 GTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~ 188 (295)
..|++++|...+++....
T Consensus 689 ~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 689 RLDDMAATQHYARLVIDD 706 (987)
T ss_pred HCCCHHHHHHHHHHHHhc
Confidence 888888888888887653
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.60 E-value=0.0083 Score=56.02 Aligned_cols=165 Identities=9% Similarity=-0.030 Sum_probs=117.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL-------HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.+..+...|.+.|++++|+.++..+.+.+..++. .+|..++. .-...+ .+...++++.+...
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~---------~~~l~~~w~~lp~~- 258 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG---------SEGLKRWWKNQSRK- 258 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC---------HHHHHHHHHhCCHH-
Confidence 7778888888889999999999888877754322 12333333 222222 45556666665332
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH-HHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE-ITA 164 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~-y~~ 164 (295)
.+.+......+.+++...|+.++|..++++.. +. .||. -..++.+....++.+++.. .+. +.+
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l-~~--~~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~ 333 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGL-KR--QYDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWST 333 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc--CCCH--HHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence 34578889999999999999999999999887 53 4444 2234555556788888887 222 667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
+=..+.+.+++++|.+.|+.... ..|+..++..+...+..
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~ 373 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDR 373 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHH
Confidence 77889999999999999999987 46888887777666643
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=97.60 E-value=0.0064 Score=59.30 Aligned_cols=137 Identities=10% Similarity=-0.003 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK 115 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g 115 (295)
.+++++|...+++..+.. +-+...+..+-.++...+. +++|...|++..+.+ +.+...|..+-..|...|
T Consensus 317 ~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE--------YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAG 386 (553)
T ss_pred chHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 344556666665555432 2233333333332222221 555666666555432 122344555555555566
Q ss_pred CHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhhc------------HHH-HHHHHHHHHhcCCHHHHHHH
Q 048764 116 DSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAYE------------EQE-ITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~~------------e~~-y~~ll~~~~~~g~~~~a~~l 181 (295)
++++|...|+... .. .|+.. .+..++..+...|+.++|.. .+. +..+-.++...|+.++|...
T Consensus 387 ~~~eAi~~~~~Al-~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 387 QLEEALQTINECL-KL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred CHHHHHHHHHHHH-hc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666554 22 23322 12222333444555555544 011 23333344455666666665
Q ss_pred HHHH
Q 048764 182 LQKL 185 (295)
Q Consensus 182 l~~m 185 (295)
+.++
T Consensus 464 ~~~~ 467 (553)
T PRK12370 464 TKEI 467 (553)
T ss_pred HHHh
Confidence 5554
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=97.57 E-value=0.0099 Score=57.98 Aligned_cols=149 Identities=10% Similarity=0.023 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|...|+++.+.+ +-+...+..+-..+...+. +++|...|+...+.... +...+
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~--------~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQ--------LEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCC-ChhhH
Confidence 67777677888999999999999988764 3344555555555544442 99999999998875432 22233
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc-HHHHHHHHHhcCCHHHhhc--------HHH----HHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT-YDPALFCFCENLEAQKAYE--------EQE----ITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t-y~~ll~~~~~~g~~~~A~~--------e~~----y~~ll~~~~~ 171 (295)
..+...+...|++++|...+++.. ... .|+... +..+-.+|...|+.++|.. .++ .+.|-..++.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l-~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELR-SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH-Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 344445667899999999999887 443 354443 5666677888999999988 111 3445555666
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.| ++|...++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 488 NS--ERALPTIREFLE 501 (553)
T ss_pred cH--HHHHHHHHHHHH
Confidence 66 578887777655
No 42
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.51 E-value=0.021 Score=53.29 Aligned_cols=158 Identities=15% Similarity=0.102 Sum_probs=124.2
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 20 ~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
..+..-|...|. +...|++++|+..++++... .||...|..+.. .+..... ..+|.+.|+.++.. .
T Consensus 304 ~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk--------~~~A~e~~~kal~l--~ 370 (484)
T COG4783 304 GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANK--------AKEAIERLKKALAL--D 370 (484)
T ss_pred cchHHHHHHHHH-HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhc--C
Confidence 444558888887 45678999999999998765 678788888877 5554442 99999999999874 4
Q ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHH
Q 048764 99 PN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEK 177 (295)
Q Consensus 99 pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~ 177 (295)
|+ ....-.+-.+|.+.|++.+|..+++.-. . ..+-|...|..|-.+|...|+..++ ..+.-.++...|++++
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~-~-~~p~dp~~w~~LAqay~~~g~~~~a-----~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYL-F-NDPEDPNGWDLLAQAYAELGNRAEA-----LLARAEGYALAGRLEQ 443 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHh-h-cCCCCchHHHHHHHHHHHhCchHHH-----HHHHHHHHHhCCCHHH
Confidence 66 5566677789999999999999999987 3 4467788999999999999999988 4555566788999999
Q ss_pred HHHHHHHHHHcccCCChhHHH
Q 048764 178 VYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 178 a~~ll~~m~~~~~~p~~~t~~ 198 (295)
|..++..-++.. .++..+|.
T Consensus 444 A~~~l~~A~~~~-~~~~~~~a 463 (484)
T COG4783 444 AIIFLMRASQQV-KLGFPDWA 463 (484)
T ss_pred HHHHHHHHHHhc-cCCcHHHH
Confidence 999999887653 44555543
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.50 E-value=0.022 Score=59.08 Aligned_cols=146 Identities=14% Similarity=0.086 Sum_probs=100.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 33 CTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 33 ~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
+.+.|++++|...|+++... +|+...+..+.. +...++ .++|...|+...+.+ +++...+..+...+
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd---------~~eA~~~l~qAL~l~-P~~~~l~~~La~~l 586 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGN---------GAARDRWLQQAEQRG-LGDNALYWWLHAQR 586 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCC---------HHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 35788888888888876543 333333434434 333444 888888888887754 23333333443444
Q ss_pred HcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------H----HHHHHHHHHHHhcCCHHHHH
Q 048764 112 ASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------E----QEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e----~~y~~ll~~~~~~g~~~~a~ 179 (295)
...|++++|...|++.. .. .|+...|..+-..+.+.|+.++|.. . ..++.+-..+...|+.++|.
T Consensus 587 ~~~Gr~~eAl~~~~~AL-~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi 663 (987)
T PRK09782 587 YIPGQPELALNDLTRSL-NI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSR 663 (987)
T ss_pred HhCCCHHHHHHHHHHHH-Hh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45689999999998877 43 4777788888889999999999888 1 12566667788899999999
Q ss_pred HHHHHHHHcccCCChh
Q 048764 180 QYLQKLRSTVRCVNEE 195 (295)
Q Consensus 180 ~ll~~m~~~~~~p~~~ 195 (295)
.++.+..+. .|+..
T Consensus 664 ~~l~~AL~l--~P~~~ 677 (987)
T PRK09782 664 EMLERAHKG--LPDDP 677 (987)
T ss_pred HHHHHHHHh--CCCCH
Confidence 999987663 56543
No 44
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.0027 Score=59.35 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=81.2
Q ss_pred HHHHHH---hcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHcCCCHHH
Q 048764 45 LYESAL---SLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN--NVIPNEALVTSVARLAASKKDSDY 119 (295)
Q Consensus 45 lf~~m~---~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~--g~~pd~~ty~~li~~~~~~g~~~~ 119 (295)
++..|. ..+.+.+......+++.|.... +++.+..++-..... ....-..|..++|+.|...|..+.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~--------~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~ 121 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKD--------DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDE 121 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHh--------HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHH
Confidence 455543 3456778888888898777766 388999888887664 222222345699999999999999
Q ss_pred HHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 120 AFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 120 A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++++++.=. .+||-||..|||.||+.+.+.|+...|.+
T Consensus 122 ~l~~L~n~~-~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~ 159 (429)
T PF10037_consen 122 LLELLKNRL-QYGIFPDNFSFNLLMDHFLKKGNYKSAAK 159 (429)
T ss_pred HHHHHhChh-hcccCCChhhHHHHHHHHhhcccHHHHHH
Confidence 999999988 99999999998888887777777666655
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.48 E-value=0.015 Score=61.61 Aligned_cols=89 Identities=11% Similarity=-0.008 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------H----HHHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------E----QEITAL 165 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e----~~y~~l 165 (295)
+++...+..+-..+.+.|++++|++.|+... ... ..+...+..+...|...|+.++|.. . ..+..+
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al-~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~l 677 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVL-TRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRV 677 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 4455667778888888999999999999887 543 2345678888889999999999987 1 114455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 048764 166 LKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 166 l~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
-.++...|+.++|..+++++...
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhh
Confidence 56677899999999999998764
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.46 E-value=0.031 Score=56.69 Aligned_cols=163 Identities=11% Similarity=-0.029 Sum_probs=112.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--------
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRL---SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-------- 97 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-------- 97 (295)
+-..|...|++++|+.+|+++....-.. ....+..|..++...+ .+++|..+++.+....-
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g--------~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE--------NYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc--------cHHHHHHHHHHHhhcCCceEeecCC
Confidence 4557777888888888888776432110 1223444444333333 39999999999987421
Q ss_pred ---CCC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HHH--
Q 048764 98 ---IPN---EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQE-- 161 (295)
Q Consensus 98 ---~pd---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~~-- 161 (295)
.|| ...+..+...+...|++++|+++|+++. ... .-+...+..+...+...|+.++|.. .|+
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al-~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~ 427 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELA-YNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNI 427 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh
Confidence 234 2355677788889999999999999998 442 3345567788888899999999998 222
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHH
Q 048764 162 --ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 203 (295)
Q Consensus 162 --y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~ 203 (295)
+..+...+...|++++|..+++++.. ..|+......+.+.
T Consensus 428 ~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 428 NLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34444567789999999999999987 46776655554433
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.43 E-value=0.03 Score=52.24 Aligned_cols=152 Identities=9% Similarity=-0.016 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHH--HHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALL--YLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll--~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
..|-..-....+.|+++.|...|.++.+ ..|+...+..+. ..+...+ +.+.|...++.+.+.. +-+.
T Consensus 119 l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g--------~~~~Al~~l~~~~~~~-P~~~ 187 (398)
T PRK10747 119 VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARN--------ENHAARHGVDKLLEVA-PRHP 187 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcC-CCCH
Confidence 3444444555788889999998888865 355554443222 2333333 2889999999987755 3457
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-------ccHHHHHHHHHhcCCHHHhhc------------HHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-------RTYDPALFCFCENLEAQKAYE------------EQEI 162 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-------~ty~~ll~~~~~~g~~~~A~~------------e~~y 162 (295)
..+..+...|.+.|++++|.+++..+. +.+..++. .+|..++.......+.+.... .+-.
T Consensus 188 ~al~ll~~~~~~~gdw~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~ 266 (398)
T PRK10747 188 EVLRLAEQAYIRTGAWSSLLDILPSMA-KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQ 266 (398)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHH
Confidence 788888899999999999999999998 66544322 233333333333322222211 1125
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.++...+...|+.++|..++.+...
T Consensus 267 ~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 267 VAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6677778888888888888887766
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.073 Score=47.55 Aligned_cols=113 Identities=16% Similarity=0.309 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH-HHH-------
Q 048764 77 LKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF-CFC------- 148 (295)
Q Consensus 77 ~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~-~~~------- 148 (295)
...|-+++|..+|..+...|. .-+...-.|+..|-+..++++|+++-.+.. +.+-. +|+.-|. .||
T Consensus 118 m~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~-k~~~q----~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLV-KLGGQ----TYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HcCCc----cchhHHHHHHHHHHHHHh
Confidence 355668888888888876543 334556677888888888888888888777 44322 3333332 222
Q ss_pred hcCCHHHhhc------------------------------------------HHH-----HHHHHHHHHhcCCHHHHHHH
Q 048764 149 ENLEAQKAYE------------------------------------------EQE-----ITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 149 ~~g~~~~A~~------------------------------------------e~~-----y~~ll~~~~~~g~~~~a~~l 181 (295)
-..+++.|.. .++ ...|..+|...|+.++...+
T Consensus 192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 2344444444 112 47788899999999999999
Q ss_pred HHHHHHcccCCChh
Q 048764 182 LQKLRSTVRCVNEE 195 (295)
Q Consensus 182 l~~m~~~~~~p~~~ 195 (295)
+.++.+....++..
T Consensus 272 L~~~~~~~~g~~~~ 285 (389)
T COG2956 272 LRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHccCCccHH
Confidence 99988776665554
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.33 E-value=0.021 Score=53.54 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-H----HHcCCCCCCcchHHHHHHHHHHHHHHhCCC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-L----CSNSATDPSLKDSALRHGFRVFDQMLSNNV-- 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~----~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-- 97 (295)
.+..+...+.+.|++++|..++..+.+.++.++ ..+..+-. + ...+. .+.+...+..+.+...
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~~a~~~~l~~~~---------~~~~~~~L~~~~~~~p~~ 258 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQKAEIGLLDEAM---------ADEGIDGLLNWWKNQPRH 258 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHH---------HhcCHHHHHHHHHHCCHH
Confidence 666777777777777777777777777764322 22221111 1 11111 2222334444443221
Q ss_pred -CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH-HHHHH--HHhcCCHHHhhc-----------HH--
Q 048764 98 -IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD-PALFC--FCENLEAQKAYE-----------EQ-- 160 (295)
Q Consensus 98 -~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~-~ll~~--~~~~g~~~~A~~-----------e~-- 160 (295)
+.+...+..+...+...|+.+.|.+++++.. +. .||..... .++.. ....++.+.+.. .+
T Consensus 259 ~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l-~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~ 335 (409)
T TIGR00540 259 RRHNIALKIALAEHLIDCDDHDSAQEIIFDGL-KK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC 335 (409)
T ss_pred HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH
Confidence 1378899999999999999999999999988 43 35554311 13332 334566655555 33
Q ss_pred H-HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHh
Q 048764 161 E-ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 205 (295)
Q Consensus 161 ~-y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~ 205 (295)
. ..++=..+.+.|++++|.+.|+........|++..+..+-..+.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 2 23556668889999999999996555556888888777766663
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.33 E-value=0.016 Score=55.46 Aligned_cols=163 Identities=14% Similarity=0.124 Sum_probs=114.4
Q ss_pred cCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHH
Q 048764 17 KTNPNPET--NFLISLQSCTKSKDLATAISLYESALSL-----N-FRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFR 87 (295)
Q Consensus 17 ~~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-----g-~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~ 87 (295)
.....|.. +...+-..|...|+++.|..+|....+. | ..|.+.+.-..+. ++...+ .+.+|..
T Consensus 191 ~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--------k~~eAv~ 262 (508)
T KOG1840|consen 191 LGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--------KYDEAVN 262 (508)
T ss_pred cccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--------cHHHHHH
Confidence 34445554 7788999999999999999999987654 2 2344443333233 555444 2888888
Q ss_pred HHHHHHh-----CCC-CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCC-CCCccc-HHHHHHHHHhcCCHH
Q 048764 88 VFDQMLS-----NNV-IP-NEALVTSVARLAASKKDSDYAFELIKRMNN----EFNV-VPRLRT-YDPALFCFCENLEAQ 154 (295)
Q Consensus 88 lf~~M~~-----~g~-~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi-~P~~~t-y~~ll~~~~~~g~~~ 154 (295)
+|+++.. .|- .| -..|++.|-.+|.+.|++++|..+++.-.+ ..|. .|.+.+ ++-+...|+..+.++
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 8888766 221 22 245677788899999999999888876432 1222 234433 556677788889999
Q ss_pred Hhhc--------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 155 KAYE--------------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 155 ~A~~--------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.|.. ...|+.|=..|-..|++++|++++++...
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 9888 22388888899999999999999998644
No 51
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.31 E-value=0.022 Score=57.87 Aligned_cols=156 Identities=12% Similarity=0.069 Sum_probs=102.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 048764 22 PETNFLISLQSCTKSKDLATAISLYESALSLNFRLSL--HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP 99 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p 99 (295)
|+..|...|. ..+.|+++.|+..|.+..+.. |+. ..+ -++.++...+. .++|+..++... ...+.
T Consensus 34 ~~~~y~~aii-~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~--------~~~A~~~~eka~-~p~n~ 100 (822)
T PRK14574 34 ADTQYDSLII-RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGR--------DQEVIDVYERYQ-SSMNI 100 (822)
T ss_pred hhHHHHHHHH-HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCC--------cHHHHHHHHHhc-cCCCC
Confidence 3345666555 567899999999999887653 332 233 66664444342 788998888877 22233
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------H---HHHHHHHH
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------E---QEITALLK 167 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e---~~y~~ll~ 167 (295)
+.....++...|...|++++|+++|+++. ... |+ ...+..++..+...++.++|+. . ..|-.++.
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL-~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~lay 177 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSL-KKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSY 177 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHH
Confidence 44445555668888899999999999988 443 33 3445577788888899988888 1 12433333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 168 VSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 168 ~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.+...++..+|++.++++.+. .|+..
T Consensus 178 L~~~~~~~~~AL~~~ekll~~--~P~n~ 203 (822)
T PRK14574 178 LNRATDRNYDALQASSEAVRL--APTSE 203 (822)
T ss_pred HHHhcchHHHHHHHHHHHHHh--CCCCH
Confidence 333355665688888888775 46543
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.21 E-value=0.059 Score=46.07 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC-C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL---HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVI-P 99 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~---~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~-p 99 (295)
.+-.+...+.+.|+++.|...|+++.... +.+. .++..+-. +...++ +++|...|+++.+..-. |
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~---------~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGD---------YAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHCcCCC
Confidence 66667777899999999999999987643 2222 23334434 444455 99999999999874322 2
Q ss_pred CH-HHHHHHHHHHHcC--------CCHHHHHHHHHHhhhhcCCCCCc
Q 048764 100 NE-ALVTSVARLAASK--------KDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 100 d~-~ty~~li~~~~~~--------g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
.. .++..+-..+... |+++.|.+.|+... .. .|+.
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~--~p~~ 148 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELI-RR--YPNS 148 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH-HH--CCCC
Confidence 21 1333333444433 78899999999988 43 3554
No 53
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.21 E-value=0.01 Score=55.07 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
--.+++..+...++++.|+.+|+++.+.. |++. ..|..++...+. -.+|.+++++.... .+-|....
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~--------E~~AI~ll~~aL~~-~p~d~~LL 237 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNE--------EVEAIRLLNEALKE-NPQDSELL 237 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCc--------HHHHHHHHHHHHHh-CCCCHHHH
Confidence 33445555666677777777777776554 4432 224443333332 45666666666542 22345555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~~ 158 (295)
..-.+.+.+.++++.|+.+.+++. .+.|+.. +|..|..+|...|+.+.|+.
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 555556666777777777777766 3356554 66666666666666666544
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.13 E-value=0.031 Score=53.49 Aligned_cols=159 Identities=14% Similarity=0.056 Sum_probs=111.9
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHh---c--C-CCCCHHhHHHHHH-HH-HcCCCCCCcchHHHHHHHHH
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALS---L--N-FRLSLHHFNALLY-LC-SNSATDPSLKDSALRHGFRV 88 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~---~--g-~~pd~~ty~~ll~-~~-~~~~~~~~~~~~~~~~a~~l 88 (295)
...|.. +++.|=..|++.|++++|...++...+ . | ..|.+.+..+-+. .| ..+. +++|..+
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~---------~Eea~~l 347 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE---------YEEAKKL 347 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc---------hhHHHHH
Confidence 344444 888888899999999999888886542 2 2 3455555555444 44 4444 7777777
Q ss_pred HHHHHh---CCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hc-C-CCCC-cccHHHHHHHHHhcCCHHH
Q 048764 89 FDQMLS---NNVIPN----EALVTSVARLAASKKDSDYAFELIKRMNN---EF-N-VVPR-LRTYDPALFCFCENLEAQK 155 (295)
Q Consensus 89 f~~M~~---~g~~pd----~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~-g-i~P~-~~ty~~ll~~~~~~g~~~~ 155 (295)
+..-.+ .-..++ ..+|+.|-..|-+.|++++|.++|++... .. | ..+. -..++-|-..|.+.+....
T Consensus 348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~ 427 (508)
T KOG1840|consen 348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE 427 (508)
T ss_pred HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence 775433 222333 35799999999999999999999998753 11 1 1222 3456777778888887776
Q ss_pred hhc-------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 156 AYE-------------------EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 156 A~~-------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
|.. .-+|..|...|.+.|+++.|.++.....
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 666 3348889999999999999999988764
No 55
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.09 E-value=0.052 Score=57.66 Aligned_cols=148 Identities=10% Similarity=0.030 Sum_probs=109.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSV 107 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~l 107 (295)
.+...+...|+.++|+.+++. .+.+...+..|-..+...+. +++|...|+...+.. +.|...+..+
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~--------~~~A~~~y~~al~~~-P~~~~a~~~l 643 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD--------YAAARAAYQRVLTRE-PGNADARLGL 643 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 345678889999999999872 34455555555555544442 999999999998853 3468899999
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--------H---H-------HHHHHHHH
Q 048764 108 ARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE--------E---Q-------EITALLKV 168 (295)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~--------e---~-------~y~~ll~~ 168 (295)
+..|...|++++|..+++... . ..|+. ..+..+-.++...|+.++|.. . + .+..+-+.
T Consensus 644 a~~~~~~g~~~eA~~~l~~ll-~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~ 720 (1157)
T PRK11447 644 IEVDIAQGDLAAARAQLAKLP-A--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARF 720 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHh-c--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHH
Confidence 999999999999999999876 3 34543 445667778889999999988 0 1 13334556
Q ss_pred HHhcCCHHHHHHHHHHHH-HcccCC
Q 048764 169 SAGTGRVEKVYQYLQKLR-STVRCV 192 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~-~~~~~p 192 (295)
+...|+.++|...+++.. ..++.|
T Consensus 721 ~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 721 EAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 788999999999999854 344544
No 56
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.04 E-value=0.015 Score=51.71 Aligned_cols=133 Identities=11% Similarity=0.160 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN-FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
+|..+|...-+.+.++.|..+|.+.++.+ ....++...++|..+...+ .+.|.+||+...+. .+.+...
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d---------~~~A~~Ife~glk~-f~~~~~~ 72 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKD---------PKRARKIFERGLKK-FPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS----------HHHHHHHHHHHHHH-HTT-HHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHH-CCCCHHH
Confidence 68889999999999999999999998654 4677778888887666666 77899999998764 5567888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
|..-|+-+...++.+.|..+|+... .. + |.... ...-|...|+.=.+.|+++.+..+.+
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i-~~-l-~~~~~------------------~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAI-SS-L-PKEKQ------------------SKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHC-CT-S-SCHHH------------------CHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHH-Hh-c-CchhH------------------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999987 43 3 33321 01226777777778888888888888
Q ss_pred HHHHc
Q 048764 184 KLRST 188 (295)
Q Consensus 184 ~m~~~ 188 (295)
++.+.
T Consensus 132 R~~~~ 136 (280)
T PF05843_consen 132 RAEEL 136 (280)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 57
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.01 E-value=0.1 Score=47.40 Aligned_cols=147 Identities=17% Similarity=0.025 Sum_probs=98.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EALVTSVA 108 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li 108 (295)
-..+...|++++|..++++..+.. +-|...++.-+.+...+... +....+.+.+.. .....|+ ...+..+-
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~l~~--~~~~~~~~~~~~~~~a 121 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFS-----GMRDHVARVLPL--WAPENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccc-----cCchhHHHHHhc--cCcCCCCcHHHHHHHH
Confidence 334567899999999999987653 44444444211122222210 024455555554 2223344 34445566
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------H---H-----HHHHHHHHHHh
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------E---Q-----EITALLKVSAG 171 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e---~-----~y~~ll~~~~~ 171 (295)
..+...|++++|...+++.. ... |+ ...+..+-..|...|+.++|.. . + .|..+-..+..
T Consensus 122 ~~~~~~G~~~~A~~~~~~al-~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRAL-ELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHH-hhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 77888999999999999988 543 54 4566778888999999999988 1 1 13456777889
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.|+.++|..++++...
T Consensus 199 ~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 199 RGDYEAALAIYDTHIA 214 (355)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999999854
No 58
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.98 E-value=0.11 Score=52.85 Aligned_cols=148 Identities=12% Similarity=0.065 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
...-.+......|+.++|+.+|.+.... -+.+...+..+-.++...+. +++|..+|++..+.. +.+...+
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQ--------WQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 3334455566789999999999988762 24555567777775555553 899999999987642 3456677
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...+...|++++|..++++.. .. .|+...+..+-..+...|+.++|.. ...+..+...+...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l-~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLV-SG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 888889999999999999999987 44 3443337778888889999999988 11245566677788
Q ss_pred CCHHHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKL 185 (295)
Q Consensus 173 g~~~~a~~ll~~m 185 (295)
+..++|+..++..
T Consensus 164 ~~~e~Al~~l~~~ 176 (765)
T PRK10049 164 RLSAPALGAIDDA 176 (765)
T ss_pred CChHHHHHHHHhC
Confidence 8888888777743
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.95 E-value=0.26 Score=44.00 Aligned_cols=92 Identities=13% Similarity=0.009 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHHH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEALV 104 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ty 104 (295)
|..+=..|.+.|+.++|...|++..+.. +-+...|+.+-..+...+. +++|...|+...+. .| +..+|
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~Al~l--~P~~~~a~ 135 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN--------FDAAYEAFDSVLEL--DPTYNYAY 135 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHh--CCCCHHHH
Confidence 4444444556666666666666655542 2334555555443333332 55666555555542 22 23445
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+...+...|++++|.+.|+.-.
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al 159 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555555544
No 60
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.94 E-value=0.15 Score=47.75 Aligned_cols=155 Identities=10% Similarity=-0.005 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH--hHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLH--HFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~--ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
.|-..-....+.|+.+.|...|.++.+.. |+.. .--+.-.+. ..++ ++.|...++.+.+.. |-|.
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~---------~~~Al~~l~~l~~~~-P~~~ 187 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNE---------LHAARHGVDKLLEMA-PRHK 187 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHhC-CCCH
Confidence 33333455667788888888888876543 3332 222223333 3344 999999999998865 3356
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH-HHHHHH---HhcCCH-------HHhhc---------HHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD-PALFCF---CENLEA-------QKAYE---------EQE 161 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~-~ll~~~---~~~g~~-------~~A~~---------e~~ 161 (295)
..+..+...|...|+++.|.+++.... +.++. +...+. .-+.++ ...+.. ..+.. ..-
T Consensus 188 ~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l 265 (409)
T TIGR00540 188 EVLKLAEEAYIRSGAWQALDDIIDNMA-KAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIAL 265 (409)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHH
Confidence 788899999999999999999999999 77643 333332 111111 222211 11222 112
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
+..+...+...|+.++|..++.+.... .|+..
T Consensus 266 ~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~ 297 (409)
T TIGR00540 266 KIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDR 297 (409)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcc
Confidence 677888899999999999999998774 34443
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.90 E-value=0.13 Score=52.33 Aligned_cols=156 Identities=10% Similarity=-0.013 Sum_probs=114.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC-----CCCCHHH
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN-----VIPNEAL 103 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g-----~~pd~~t 103 (295)
.|-+..+.++..++++.|+.|...|.+...++--.+-.+|-... +.++|..+|.+..... .+++...
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~--------~P~kA~~l~~~~~~~~~~~~~~~~~~~~ 369 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR--------LPEKAAPILSSLYYSDGKTFRNSDDLLD 369 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC--------CcHHHHHHHHHHhhccccccCCCcchHH
Confidence 46678889999999999999999998766788888888665555 2889999999996643 2345555
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcC-------------CCCCccc-HHHHHHHHHhcCCHHHhhc-----------
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFN-------------VVPRLRT-YDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~g-------------i~P~~~t-y~~ll~~~~~~g~~~~A~~----------- 158 (295)
...|.-+|.-.+++++|..+++.+. ..- --||... +..++..+.-.|++.+|.+
T Consensus 370 ~~~L~yA~ld~e~~~~A~~~l~~~~-~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~ 448 (822)
T PRK14574 370 ADDLYYSLNESEQLDKAYQFAVNYS-EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA 448 (822)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH-hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7889999999999999999999998 521 1122222 3456777889999999998
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 159 -EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 159 -e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
..-...+=+.+...|...+|+.+++..... .|+..
T Consensus 449 n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~ 484 (822)
T PRK14574 449 NQNLRIALASIYLARDLPRKAEQELKAVESL--APRSL 484 (822)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccH
Confidence 111455666677778888888888554432 55443
No 62
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.015 Score=56.01 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=117.9
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSLNFRL-SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.|++ ||.++=..|+-.++.+.|+..|+...+- .| ..++|+.+=+ .-.... ++.|..-|..-+.
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee---------~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEE---------FDKAMKSFRKALG-- 483 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHH---------HHhHHHHHHhhhc--
Confidence 3444 9999999999999999999999988653 34 6788888777 444444 8899999987654
Q ss_pred CCCCHHHHHH---HHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------HH----
Q 048764 97 VIPNEALVTS---VARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------EQ---- 160 (295)
Q Consensus 97 ~~pd~~ty~~---li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e~---- 160 (295)
.|...||+ |--.|-+.++++.|.-.|+.-. .|-|. .+.-..+-..+-+.|..|+|+. ++
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 56566665 5667889999999999999876 34454 4445555566678899999988 11
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH-HHHHHHH
Q 048764 161 -EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG-KIIEDWF 204 (295)
Q Consensus 161 -~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~-~~l~~~~ 204 (295)
-|. ....+.-.++.++|+..|+++++ ..|++.+. -++-..|
T Consensus 559 ~~~~-~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~ 601 (638)
T KOG1126|consen 559 CKYH-RASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIY 601 (638)
T ss_pred hHHH-HHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHH
Confidence 132 22334456899999999999988 46877654 3444444
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.87 E-value=0.062 Score=53.62 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=118.1
Q ss_pred CChhhhhcCCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCC-------------
Q 048764 10 SKPNKKRKTNPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATD------------- 74 (295)
Q Consensus 10 ~~~~~~~~~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~------------- 74 (295)
++++.+++...+|+. .+.-.-..|++ |++++|..++.+..+.. +.+...|-+|-..+...++.
T Consensus 125 ~~~~~r~~~~l~~~l~~ll~eAN~lfar-g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL 202 (895)
T KOG2076|consen 125 RGRRSRGKSKLAPELRQLLGEANNLFAR-GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL 202 (895)
T ss_pred cCCCCCcccccCHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 333444444555544 66666777787 99999999999998774 56667888887766655431
Q ss_pred -C------------CcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc---
Q 048764 75 -P------------SLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR--- 138 (295)
Q Consensus 75 -~------------~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~--- 138 (295)
+ +.+.|.+++|.-.|....+.. ++|...+--=+..|-+.|+...|++.|.+|. ... .|...
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-~~~-p~~d~er~ 279 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLL-QLD-PPVDIERI 279 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHH-hhC-CchhHHHH
Confidence 0 124445677777777666543 2444444445566777888888888888877 433 12211
Q ss_pred --cHHHHHHHHHhcCCHHHhhc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 139 --TYDPALFCFCENLEAQKAYE--------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 139 --ty~~ll~~~~~~g~~~~A~~--------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
+--.+++.|...++-+.|.+ .++++.+...+.+...++.|...+..+.....+++++-|
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 22233445555666565555 445888888888888888888888888776666666555
No 64
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=96.86 E-value=0.062 Score=41.49 Aligned_cols=108 Identities=7% Similarity=0.034 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
....+...+.+.|++++|...|+.+...+ +.+...+..+-..+...+ ++++|..+|+.....+ +.+..+|
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~~~~~-p~~~~~~ 88 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLK--------EYEEAIDAYALAAALD-PDDPRPY 88 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhcC-CCChHHH
Confidence 45556677888899999999999887754 335555555555443333 2889999999887654 4566777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
-.+-..|...|+++.|...|+... .. .|+...+..+..
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~ 126 (135)
T TIGR02552 89 FHAAECLLALGEPESALKALDLAI-EI--CGENPEYSELKE 126 (135)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-Hh--ccccchHHHHHH
Confidence 777788889999999999998877 43 477766655444
No 65
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.85 E-value=0.0093 Score=53.24 Aligned_cols=138 Identities=15% Similarity=0.181 Sum_probs=93.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVAR 109 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~ 109 (295)
..+...|++++|+++++.- -+.......+. ++..++ ++.|.+.|+.|.+.+ .| .+.+-|..
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R---------~dlA~k~l~~~~~~~--eD-~~l~qLa~ 171 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNR---------PDLAEKELKNMQQID--ED-SILTQLAE 171 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT----------HHHHHHHHHHHHCCS--CC-HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCC---------HHHHHHHHHHHHhcC--Cc-HHHHHHHH
Confidence 3456679999998888642 34566666777 444454 889999999998742 44 44444444
Q ss_pred HHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HH-HHHHHHHHHHhcC
Q 048764 110 LAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQ-EITALLKVSAGTG 173 (295)
Q Consensus 110 ~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~-~y~~ll~~~~~~g 173 (295)
++.. ...+..|+.+|++|. .. ..++..+.|.+..++...|++++|.. .+ ....++-+....|
T Consensus 172 awv~l~~g~e~~~~A~y~f~El~-~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g 249 (290)
T PF04733_consen 172 AWVNLATGGEKYQDAFYIFEELS-DK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLG 249 (290)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHH-CC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCchhHHHHHHHHHHHH-hc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC
Confidence 4443 447899999999987 43 35777888888889999999999988 22 2444555556667
Q ss_pred CH-HHHHHHHHHHHHc
Q 048764 174 RV-EKVYQYLQKLRST 188 (295)
Q Consensus 174 ~~-~~a~~ll~~m~~~ 188 (295)
+. +.+.+++.+|+..
T Consensus 250 k~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 250 KPTEAAERYLSQLKQS 265 (290)
T ss_dssp -TCHHHHHHHHHCHHH
T ss_pred CChhHHHHHHHHHHHh
Confidence 66 6788899998764
No 66
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.77 E-value=0.056 Score=42.90 Aligned_cols=110 Identities=12% Similarity=0.024 Sum_probs=80.5
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 19 NPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 19 ~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
...|+. +...-..+.+.|++++|+..|+...... +.+...|..+-..|...+ ++++|...|+...... +
T Consensus 21 ~~~p~~-~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g--------~~~~A~~~y~~Al~l~-p 89 (144)
T PRK15359 21 SVDPET-VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLK--------EYTTAINFYGHALMLD-A 89 (144)
T ss_pred HcCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHhcC-C
Confidence 344554 3345566788999999999999887653 445666666666665555 3999999999998743 3
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHH
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDP 142 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ 142 (295)
.+..++..+-.++...|++++|...|+.-. . +.|+...|..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al-~--~~p~~~~~~~ 130 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAI-K--MSYADASWSE 130 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH-H--hCCCChHHHH
Confidence 577888888889999999999999999877 3 4576655543
No 67
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.74 E-value=0.082 Score=55.26 Aligned_cols=162 Identities=17% Similarity=0.176 Sum_probs=116.6
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCC---HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSL-NFRLS---LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-g~~pd---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
.|++ .|-..|.-..+.++++.|..+++++... +++-. .-.|.+++++-..-+. -+...++|+...+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~--------eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT--------EESLKKVFERACQ 1525 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc--------HHHHHHHHHHHHH
Confidence 4555 8888899999999999999999988643 22221 2466777774333231 5677888888766
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----------------
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------------- 158 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------------- 158 (295)
.. -....|..|..-|.+.+.+++|-++|+.|..+.| -....|...+..+.+..+.+.|..
T Consensus 1526 yc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 YC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred hc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 32 2246788888899999999999999999974455 444567777777777777555544
Q ss_pred --------------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 159 --------------------------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 159 --------------------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
-.-|+..|+.-.++|+.+.++.+|++....++.|-.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 011788888888899999999999998887776643
No 68
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.65 E-value=0.023 Score=49.85 Aligned_cols=102 Identities=12% Similarity=0.162 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCC----------CcchHHHHHHHHHH
Q 048764 25 NFLISLQSCTKS-----KDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDP----------SLKDSALRHGFRVF 89 (295)
Q Consensus 25 t~~~li~~~~~~-----g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~----------~~~~~~~~~a~~lf 89 (295)
+|-+.+.-|... +.++-....+..|++-|+.-|..+|+.||+.+-++...+ +.++ -+=+.+++
T Consensus 69 sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~Q--Q~C~I~vL 146 (406)
T KOG3941|consen 69 SFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQ--QNCAIKVL 146 (406)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchh--hhHHHHHH
Confidence 788888777654 677778888899999999999999999999988888643 1222 34588999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHhh
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSD-YAFELIKRMN 128 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~-~A~~l~~~M~ 128 (295)
++|...||.||--+--.||+++++.+-+- +..++.-=|.
T Consensus 147 eqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 147 EQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999987653 3344444443
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.59 E-value=0.052 Score=37.46 Aligned_cols=93 Identities=15% Similarity=0.097 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
|..+...+...|++++|+.+|+++.+.. +.+...+..+-..+...+ .+++|.+.|+...... +.+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~~~a~~~~~~~~~~~-~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLG--------KYEEALEDYEKALELD-PDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCC-CcchhHHH
Confidence 5566677888999999999999887653 223344444444444333 2889999999887754 23446888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhh
Q 048764 106 SVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+...+...|+++.|...|....
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 88899999999999999998876
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.57 E-value=0.41 Score=40.90 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
..--|=-+|.+.|+...|..-+++..+.. +-+.-++.++-.+|..-+ ..+.|.+-|..-.+.. +-|..+.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~G--------e~~~A~e~YrkAlsl~-p~~GdVL 106 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLG--------ENDLADESYRKALSLA-PNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC--------ChhhHHHHHHHHHhcC-CCccchh
Confidence 55556678999999999999999998763 334456666666776655 2888999999877633 1345566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhh--hcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNN--EFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~--~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
|.-=--+|..|.+++|...|+.-.. .+|-. ..||.-+--+..+.|+.+.|.. .+....|-+...
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~--s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~ 184 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEP--SDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY 184 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc--chhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence 6666677899999999999998762 23322 3477777778888999998887 333677888888
Q ss_pred hcCCHHHHHHHHHHHHHcccCCChhHHHH
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVNEETGKI 199 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~ 199 (295)
+.|++-.|..++++....+. ++.+..-+
T Consensus 185 ~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L 212 (250)
T COG3063 185 KAGDYAPARLYLERYQQRGG-AQAESLLL 212 (250)
T ss_pred hcccchHHHHHHHHHHhccc-ccHHHHHH
Confidence 99999999999999888775 55544433
No 71
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.55 E-value=0.18 Score=48.86 Aligned_cols=154 Identities=14% Similarity=0.150 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~t 103 (295)
.|+.|-.+.-..|++.+|.+.|.+...-. +--..+.+.|-+.+..-+ .+++|..+|..-.+ +.|. ...
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~--------~~e~A~~ly~~al~--v~p~~aaa 390 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQG--------KIEEATRLYLKALE--VFPEFAAA 390 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc--------cchHHHHHHHHHHh--hChhhhhh
Confidence 67777777777777777777777666432 112344555555555444 38888888887665 4455 456
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSA 170 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~ 170 (295)
+|.|-..|-+.|++++|+..+++-. .|+|+- ..|+-+=..|-..|+++.|.+ .| .++.|-..|.
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k 467 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK 467 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence 8899999999999999999999876 567864 467777778888888888888 22 3678888899
Q ss_pred hcCCHHHHHHHHHHHHHcccCCCh
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
..|++.+|..-++.-.. +.|+.
T Consensus 468 DsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred ccCCcHHHHHHHHHHHc--cCCCC
Confidence 99999999988887543 46654
No 72
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.54 E-value=0.42 Score=43.77 Aligned_cols=168 Identities=12% Similarity=0.043 Sum_probs=120.6
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSL-------HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 23 ~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
....+.....|.+.|++...+.+...|.+.|+--|. .+|+.+|.=+..... .+.-..-+++...
T Consensus 187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~--------~~gL~~~W~~~pr- 257 (400)
T COG3071 187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG--------SEGLKTWWKNQPR- 257 (400)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc--------chHHHHHHHhccH-
Confidence 347888999999999999999999999999865443 688888884444331 3333333443322
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHH---hhc--------HHH-HH
Q 048764 96 NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQK---AYE--------EQE-IT 163 (295)
Q Consensus 96 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~---A~~--------e~~-y~ 163 (295)
..+-+...-.+++.-+...|+.++|.+++.+-. +.+..|+..++ -.+.+-++.+. +.+ .|. +.
T Consensus 258 ~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~ 332 (400)
T COG3071 258 KLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLS 332 (400)
T ss_pred HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHHHH----HhhcCCCCchHHHHHHHHHHHhCCCChhHHH
Confidence 233445566678888889999999999999988 88878873332 33444444332 222 222 78
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
+|=..|.+.+.+.+|...|+. .....|+.+++..+...|..
T Consensus 333 tLG~L~~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~ 373 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEA--ALKLRPSASDYAELADALDQ 373 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHH
Confidence 888889999999999999994 45578999999999888843
No 73
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.52 E-value=0.13 Score=40.65 Aligned_cols=93 Identities=17% Similarity=0.078 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH----HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY----LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~----~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
.|..++..+. .++...+...++.+.... +-+.+..-..|. .+..++ +++|...|+........|+
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~---------~~~A~~~l~~~~~~~~d~~ 82 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGD---------YDEAKAALEKALANAPDPE 82 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHhhCCCHH
Confidence 7888888774 888999999999988763 222232222222 333444 9999999999988763333
Q ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 101 E--ALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 101 ~--~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
. ...-.|...+...|++++|+.+++...
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~ 112 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQIP 112 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhcc
Confidence 2 234446778888999999999997644
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.51 E-value=0.028 Score=50.19 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=80.4
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 28 ISLQSCTKS-KDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 28 ~li~~~~~~-g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
.++..|.+. .+-+.++.-+.+.......++..++..+.. ++...+ .+++|+++++.- .+.-...
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~--------~~~~AL~~l~~~------~~lE~~a 135 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG--------DYEEALKLLHKG------GSLELLA 135 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC--------HHHHHHCCCTTT------TCHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC--------CHHHHHHHHHcc------CcccHHH
Confidence 344455554 445556555555444443333334444443 333333 388888777642 4556666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh--cC--CHHHhhc------------HHHHHHHHHHH
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE--NL--EAQKAYE------------EQEITALLKVS 169 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~--~g--~~~~A~~------------e~~y~~ll~~~ 169 (295)
..|..|.+.+++|.|...++.|. +.+ .| .+-.-|..++.. .| .+.+|+. ....|.+.-++
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~-~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQ-QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH-CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 77888888888888888888888 432 33 333344444443 22 4555655 11256666677
Q ss_pred HhcCCHHHHHHHHHHHH
Q 048764 170 AGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~ 186 (295)
...|++++|.+++.+-.
T Consensus 212 l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHCT-HHHHHHHHHHHC
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 78888888888888754
No 75
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=96.50 E-value=0.13 Score=43.17 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+-..|...|++++|+..|++..+.. +-|...+..+-. ++...+.. ..++|..+|++..+.+. -+..+
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~------~~~~A~~~l~~al~~dP-~~~~a 146 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQH------MTPQTREMIDKALALDA-NEVTA 146 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCC-CChhH
Confidence 88888888999999999999999887654 335556665555 33343310 14789999999887543 35677
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
+..+-..+...|++++|...++.+. ... .|+..-+. +|.+
T Consensus 147 l~~LA~~~~~~g~~~~Ai~~~~~aL-~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 147 LMLLASDAFMQADYAQAIELWQKVL-DLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCccHHH-HHHH
Confidence 8888888889999999999999988 444 55554443 3344
No 76
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.45 E-value=0.087 Score=49.00 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=85.9
Q ss_pred HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 59 HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+...+|+.++..... ++.|..+|+++.+.. |+.. ..|++.+...++-.+|.+++++.. ... .-+..
T Consensus 170 yLv~~Ll~~l~~t~~--------~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL-~~~-p~d~~ 235 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQR--------YDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEAL-KEN-PQDSE 235 (395)
T ss_pred HHHHHHHHHHhhccc--------HHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHH-HhC-CCCHH
Confidence 444455565655553 999999999998865 6644 458888888888899999999988 432 22333
Q ss_pred cHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 139 TYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 139 ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
....-...|.+.++.+.|.. -..|..|..+|...|+++.|+-.+..+.-
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 34444556778999999998 12389999999999999999999998754
No 77
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.43 E-value=0.17 Score=37.69 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--CCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF--RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV--IPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~--~pd 100 (295)
++-.+...+.+.|++++|...|.++.+..- +.....+..+-..+...+. ++.|...|+......- +..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK--------YADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHHCCCCCcc
Confidence 455566678889999999999999986531 1112333334444444332 9999999999887431 122
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
..++..+...+.+.|+.++|..++++.. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~ 106 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVI-KRY 106 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHH-HHC
Confidence 4567788888899999999999999998 553
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.34 E-value=0.27 Score=38.86 Aligned_cols=116 Identities=12% Similarity=0.039 Sum_probs=75.9
Q ss_pred HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 59 HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP--NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
..|..++.....++ ...+...++.+.+..-.- .....-.+-..+...|++++|...|+... ...-.|+
T Consensus 13 ~~y~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~-~~~~d~~ 82 (145)
T PF09976_consen 13 ALYEQALQALQAGD---------PAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKAL-ANAPDPE 82 (145)
T ss_pred HHHHHHHHHHHCCC---------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCHH
Confidence 45666666556555 788888999998753211 11222234467778999999999999998 6653333
Q ss_pred cc--cHHHHHHHHHhcCCHHHhhc----------HH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 137 LR--TYDPALFCFCENLEAQKAYE----------EQ-EITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 137 ~~--ty~~ll~~~~~~g~~~~A~~----------e~-~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
.. ..-.|...+...|+.++|.. .+ .+..+=+.+.+.|+.++|...++.
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 22 33345566777888888887 11 134455567788888888877764
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.23 E-value=0.58 Score=41.79 Aligned_cols=138 Identities=10% Similarity=-0.006 Sum_probs=94.9
Q ss_pred CCHHHHHHHHHHHHhcC-CCCCH--HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 048764 37 KDLATAISLYESALSLN-FRLSL--HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS 113 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g-~~pd~--~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~ 113 (295)
+..+.++.-+.++.... ..|+. ..|..+-.++...+. .++|...|++..+.. +.+...|+.+-..+..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~--------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~ 110 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGL--------RALARNDFSQALALR-PDMADAYNYLGIYLTQ 110 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34466777888877543 23322 233333333433332 899999999988754 2457899999999999
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--------HHH--H-HHHHHHHHhcCCHHHHHHH
Q 048764 114 KKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--------EQE--I-TALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 114 ~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--------e~~--y-~~ll~~~~~~g~~~~a~~l 181 (295)
.|+++.|.+.|+... . +.|+ ..+|..+-..+...|+.++|.. .|. + ...+..+...++.++|...
T Consensus 111 ~g~~~~A~~~~~~Al-~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 111 AGNFDAAYEAFDSVL-E--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred CCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHH
Confidence 999999999999987 4 3465 4567777778889999999988 111 2 2222234456789999999
Q ss_pred HHHHH
Q 048764 182 LQKLR 186 (295)
Q Consensus 182 l~~m~ 186 (295)
|.+..
T Consensus 188 l~~~~ 192 (296)
T PRK11189 188 LKQRY 192 (296)
T ss_pred HHHHH
Confidence 97654
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.14 E-value=0.78 Score=41.55 Aligned_cols=155 Identities=11% Similarity=0.016 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCH--HH
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNE--AL 103 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~--~t 103 (295)
..+-..+...|++++|...|++..+.. +.+...+..+-..+...+. +++|...+++.....- .|+. ..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~--------~~eA~~~l~~~l~~~~~~~~~~~~~ 188 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR--------FKEGIAFMESWRDTWDCSSMLRGHN 188 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC--------HHHHHHHHHhhhhccCCCcchhHHH
Confidence 344457788999999999999998764 4455566666664444442 9999999998876322 2343 34
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCCcccH-H--HHHHHHHhcCCHHHhhc--------HHH-------HH-
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTY-D--PALFCFCENLEAQKAYE--------EQE-------IT- 163 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~ty-~--~ll~~~~~~g~~~~A~~--------e~~-------y~- 163 (295)
|..+...+...|++++|..+|++.. .... .+..... + .++.-+...|....+.. .+. +.
T Consensus 189 ~~~la~~~~~~G~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 267 (355)
T cd05804 189 WWHLALFYLERGDYEAALAIYDTHI-APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFND 267 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHh-ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHH
Confidence 6678889999999999999999976 3221 1222111 1 22222333342221111 011 22
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHcccC
Q 048764 164 -ALLKVSAGTGRVEKVYQYLQKLRSTVRC 191 (295)
Q Consensus 164 -~ll~~~~~~g~~~~a~~ll~~m~~~~~~ 191 (295)
....++...|+.++|..++..+......
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~ 296 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASS 296 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 5666778889999999999998775433
No 81
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.00 E-value=0.019 Score=50.30 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=75.6
Q ss_pred CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC----------------CHH
Q 048764 55 RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK----------------DSD 118 (295)
Q Consensus 55 ~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g----------------~~~ 118 (295)
.-|..+|-..+.-+...+. -+.++++-....++.|.+.||..|..+|+.||+.+-+.. +-+
T Consensus 64 ~RdK~sfl~~V~~F~E~sV---r~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~ 140 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSV---RGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN 140 (406)
T ss_pred cccHHHHHHHHHHHHHhhh---cccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence 4456666666665443320 122358888899999999999999999999999887632 224
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 119 YAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 119 ~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
=++.++++|. ..|+.||-.+-..||++|.+.+..-.-+
T Consensus 141 C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~ 178 (406)
T KOG3941|consen 141 CAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKV 178 (406)
T ss_pred HHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHH
Confidence 4788999999 9999999999999999999988765443
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.95 E-value=0.15 Score=45.68 Aligned_cols=121 Identities=8% Similarity=0.053 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
||--|-..|.+..+...|+.+|.+-.+. .|-.+||-.=+. ...... ..++|.++|+...+.. +-|+-.
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~--------~~~~a~~lYk~vlk~~-~~nvEa 326 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME--------QQEDALQLYKLVLKLH-PINVEA 326 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH--------hHHHHHHHHHHHHhcC-Ccccee
Confidence 5555555555555555555555444332 222233222111 222222 3778888888877643 245666
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..++-.+|...++++.|+.++..+. +-|+ -+..-|+.+--+|.-.+++|-++.
T Consensus 327 iAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 327 IACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred eeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 7777788888999999999999998 8885 455566666666667777776655
No 83
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.94 E-value=0.13 Score=39.57 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|+.....+ +.+...|..+-..+...|+++.|..+|+... ..+ |+ ..+|..
T Consensus 33 ~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~--p~~~~~~~~------------------ 90 (135)
T TIGR02552 33 YDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAA-ALD--PDDPRPYFH------------------ 90 (135)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC--CCChHHHHH------------------
Confidence 889999999887754 3477888888888889999999999999876 433 43 333322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+-..+...|+.++|...+.+..+
T Consensus 91 ----la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 ----AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred ----HHHHHHHcCCHHHHHHHHHHHHH
Confidence 22345566677777777766555
No 84
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.87 E-value=0.17 Score=48.96 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=89.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHcCCC-C-------------C------------Cc
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS-LHHFNALLYLCSNSAT-D-------------P------------SL 77 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~ll~~~~~~~~-~-------------~------------~~ 77 (295)
.|+.|=..+-..|++-.|+..|++...-. |+ .-.|-.|=+.++.... + + +-
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy 297 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY 297 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence 56666666666677777777776665321 11 1223333333333221 0 0 12
Q ss_pred chHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
.+|.++-|...|+.-.+ +.|+ ...||.|-.++-..|++.+|.+.+++-. ... .-...+-+-|-..|...|.++.|
T Consensus 298 eqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL-~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL-RLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred ccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHhccchHH
Confidence 45568888888887765 3344 4678888888888888888888887765 322 11233555666666777776666
Q ss_pred hc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 157 YE------------EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 157 ~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.. ...+|.|-..|-..|++++|..-+++-.
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 65 1124555555566666666665555543
No 85
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.79 E-value=0.95 Score=43.84 Aligned_cols=150 Identities=16% Similarity=0.057 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCCCC-HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC-C
Q 048764 25 NFLISLQSCTKSK-----DLATAISLYESALSLNFRLS-LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN-N 96 (295)
Q Consensus 25 t~~~li~~~~~~g-----~~~~A~~lf~~m~~~g~~pd-~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~-g 96 (295)
.|...+.+..... +...|..+|++..+. .|| ...|..+.. ........+ .....+..+.+........ .
T Consensus 339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~-~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQP-LDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhhhccc
Confidence 8888888755432 377999999999875 343 344444322 112222111 1122355555555554442 2
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVE 176 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~ 176 (295)
.+.+..+|.++--.+...|++++|...|++.. ..+ |+... |..+-..+...|+.+
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl-~L~--ps~~a----------------------~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAI-DLE--MSWLN----------------------YVLLGKVYELKGDNR 470 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcC--CCHHH----------------------HHHHHHHHHHcCCHH
Confidence 34455778888666777899999999999988 554 65444 455556677788888
Q ss_pred HHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 177 KVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 177 ~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
+|.+.+.+-.+ ..|...||....++.
T Consensus 471 eA~~~~~~A~~--L~P~~pt~~~~~~~~ 496 (517)
T PRK10153 471 LAADAYSTAFN--LRPGENTLYWIENLV 496 (517)
T ss_pred HHHHHHHHHHh--cCCCCchHHHHHhcc
Confidence 88888877544 467777877765544
No 86
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.71 E-value=0.15 Score=39.55 Aligned_cols=82 Identities=11% Similarity=0.123 Sum_probs=62.5
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS---------------NNVIPNEALVTSVARLAASKKDSDYAF 121 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~---------------~g~~pd~~ty~~li~~~~~~g~~~~A~ 121 (295)
|..++.++|.++++.+. ++....+.+..-. ....|+..+..+++.+|+..+++..|+
T Consensus 1 de~~~~~ii~al~r~g~--------~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al 72 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQ--------LDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL 72 (126)
T ss_pred ChHHHHHHHHHHhhcCC--------HHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence 34566677775555542 6666666554322 234699999999999999999999999
Q ss_pred HHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 122 ELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 122 ~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
.+++.....+++.-+..+|..|++=
T Consensus 73 ~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 73 KLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999988789988888888888874
No 87
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.70 E-value=0.048 Score=36.78 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHH
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL 144 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll 144 (295)
.|.+++|..+|+++..... -|...+-.+...|.+.|++++|..+++.+. .. .|+...|..++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~-~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL-KQ--DPDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH-GG--GTTHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH--CcCHHHHHHHH
Confidence 4569999999999987532 377788889999999999999999999998 44 47755665554
No 88
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.61 E-value=0.32 Score=46.34 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=81.8
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH-HHh
Q 048764 17 KTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQ-MLS 94 (295)
Q Consensus 17 ~~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~-M~~ 94 (295)
.....|+-+|...|..--+..-+..|..+|.++++.+..+ .++.++++|.+++..+ ..-|.+||+- |+.
T Consensus 360 ~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD---------~~~AfrIFeLGLkk 430 (656)
T KOG1914|consen 360 IEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKD---------KETAFRIFELGLKK 430 (656)
T ss_pred hhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCC---------hhHHHHHHHHHHHh
Confidence 3445555577777777777777777777888777777666 7777777777555555 5567777774 343
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc--ccHHHHHHHHHhcCCHHHhhc
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL--RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~--~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|- +..--+.-++-+..-++=..|..+|+... ..++.|+. ..|..+|.-=+.-|++...+.
T Consensus 431 f~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l-~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 431 FGD--SPEYVLKYLDFLSHLNDDNNARALFERVL-TSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred cCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHH-hccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 322 11223445566666666677777777777 55555543 456666665555565555444
No 89
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1 Score=39.37 Aligned_cols=110 Identities=14% Similarity=0.128 Sum_probs=76.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVAR 109 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~ 109 (295)
..-|+..+++++|++.... |-..+....|.-|.+ +.. .++-|.+..+.|.+- -+..|.|-|..
T Consensus 115 a~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~l-k~~---------r~d~A~~~lk~mq~i---ded~tLtQLA~ 177 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHL----GENLEAAALNVQILL-KMH---------RFDLAEKELKKMQQI---DEDATLTQLAQ 177 (299)
T ss_pred hHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHH-HHH---------HHHHHHHHHHHHHcc---chHHHHHHHHH
Confidence 3458888999999888765 334444555544442 112 277899999999872 46677776665
Q ss_pred HHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 110 LAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 110 ~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++.+ .+.+..|+-+|++|. . ...|+..+-+....++...|++++|..
T Consensus 178 awv~la~ggek~qdAfyifeE~s-~-k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEELS-E-KTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHHh-c-ccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 5554 667899999999998 3 246888888887777777777777754
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.51 E-value=0.25 Score=39.16 Aligned_cols=88 Identities=7% Similarity=-0.133 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|+...... +.+...|..+-.++...|++++|...|+... .. .|+ ...+
T Consensus 40 ~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~l--~p~~~~a~-------------------- 95 (144)
T PRK15359 40 YSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHAL-ML--DASHPEPV-------------------- 95 (144)
T ss_pred HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc--CCCCcHHH--------------------
Confidence 889999999887644 3577888888888999999999999999888 43 343 3333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
..+-.++...|+.++|...+..... ..|+...+
T Consensus 96 --~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~ 128 (144)
T PRK15359 96 --YQTGVCLKMMGEPGLAREAFQTAIK--MSYADASW 128 (144)
T ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHH
Confidence 3334445566777777777777654 34544333
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.50 E-value=1.6 Score=42.17 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=77.2
Q ss_pred CCCHHHHH--HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhcHHH----------H--
Q 048764 98 IPNEALVT--SVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYEEQE----------I-- 162 (295)
Q Consensus 98 ~pd~~ty~--~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~e~~----------y-- 162 (295)
+|....|+ -+-.-|-..|++++|+++++.-. .. .|.. .-|..--..|-+.|++.+|...++ |
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI-~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI-EH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYIN 265 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHH
Confidence 35554554 44566778999999999999887 44 4764 457777788889999999999221 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~ 206 (295)
+-....+.++|++++|..++....+.+..|-.....+=.-||..
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~ 309 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET 309 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH
Confidence 45667788999999999999999887765655555444455544
No 92
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.38 E-value=0.41 Score=44.03 Aligned_cols=104 Identities=9% Similarity=0.062 Sum_probs=76.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARL 110 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~ 110 (295)
..+...|++++|+.+|+++.+.. +-+...|..+-.++...+. +++|...++...... +.+...|..+-.+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~--------~~eAl~~~~~Al~l~-P~~~~a~~~lg~~ 79 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGN--------FTEAVADANKAIELD-PSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 45667899999999999998753 3344555555455544442 999999999988743 2357788888889
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
|...|++++|...|+... . +.|+...+..++.-|
T Consensus 80 ~~~lg~~~eA~~~~~~al-~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGA-S--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHhCCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHH
Confidence 999999999999999987 4 457766665555443
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.36 Score=42.87 Aligned_cols=143 Identities=11% Similarity=0.090 Sum_probs=99.4
Q ss_pred HHHhcCCHHHHHHHHHHHHh-cCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC------------
Q 048764 32 SCTKSKDLATAISLYESALS-LNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI------------ 98 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~-~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~------------ 98 (295)
...+.|+.+.|+.-|+...+ .|..| ...||.-|.-++++. .+.|++...++.++|+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy~~~q---------yasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHYSSRQ---------YASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHHhhhh---------HHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 34588999999999998775 55665 478999999888888 89999999999998862
Q ss_pred -CCHH--------HHHHHHHH-------HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHH--HHHHhcCCHHHhhc--
Q 048764 99 -PNEA--------LVTSVARL-------AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL--FCFCENLEAQKAYE-- 158 (295)
Q Consensus 99 -pd~~--------ty~~li~~-------~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll--~~~~~~g~~~~A~~-- 158 (295)
||+. .-++++.+ +.+.|+.+.|.+-+-.|.....-..|.+|...+. ++=++-++-..-+.
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFL 302 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFL 302 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHH
Confidence 4432 23344444 3457899999999999975444455666655432 22222222111111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
..+|..+|-.||+..-++-|-+++.+
T Consensus 303 L~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 303 LQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45688888899999998888888776
No 94
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.35 E-value=0.23 Score=38.52 Aligned_cols=94 Identities=10% Similarity=0.083 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhcCCH
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----EQEITALLKVSAGTGRV 175 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~g~~ 175 (295)
|+.++.++|-++++.|+++....+++. ..||.++...= .+++...-. .....+++.+|+..|++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~---~WgI~~~~~~~---------~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i 68 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS---VWGIDVNGKKK---------EGDYPPSSPLYPTSRLLIAIVHSFGYNGDI 68 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH---hcCCCCCCccc---------cCccCCCCCCCCCHHHHHHHHHHHHhcccH
Confidence 678999999999999999999888864 34444332110 000000000 22267788888999999
Q ss_pred HHHHHHHHHHHHc-ccCCChhHHHHHHHHHh
Q 048764 176 EKVYQYLQKLRST-VRCVNEETGKIIEDWFS 205 (295)
Q Consensus 176 ~~a~~ll~~m~~~-~~~p~~~t~~~l~~~~~ 205 (295)
..|..+++...+. ++..+..+|..|..|--
T Consensus 69 ~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 69 FSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999997664 55666788988877763
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.34 E-value=1.1 Score=37.57 Aligned_cols=114 Identities=9% Similarity=0.066 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHH-HhcCC--HHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCF-CENLE--AQKAY 157 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~-~~~g~--~~~A~ 157 (295)
.+++...++...+.+ +.|...|..|-..|...|+++.|...|+... .. .| |...|..+-.++ ...|+ .++|.
T Consensus 55 ~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 55 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL-QL--RGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 677777777766543 4678899999999999999999999999877 44 45 445566666654 56676 36666
Q ss_pred c--------H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 158 E--------E----QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 158 ~--------e----~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
. . ..+..+-..+...|++++|...++++.+.. .|+.....+|
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~~i 184 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHHHH
Confidence 6 1 125666667889999999999999997753 5555555555
No 96
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.09 E-value=0.19 Score=34.52 Aligned_cols=49 Identities=10% Similarity=0.029 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+.+++|..+|++..+.. +.+..++..+...+...++++.|.++|+...
T Consensus 13 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 13 LGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777766532 2233566667777777777777777777765
No 97
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.08 E-value=0.68 Score=41.47 Aligned_cols=137 Identities=12% Similarity=0.190 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHcCC
Q 048764 39 LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV---IPNEALVTSVARLAASKK 115 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~---~pd~~ty~~li~~~~~~g 115 (295)
+++.+.+++.|++.|+.-+.++|-+.+-+....... ...-.+.+|..+|+.|++... .++-.++.+|+.. ...
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~--~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKE--DYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccc--cHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 456678999999999999988888766644442211 122248899999999999664 5778888888776 333
Q ss_pred CH----HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcc
Q 048764 116 DS----DYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGR--VEKVYQYLQKLRSTV 189 (295)
Q Consensus 116 ~~----~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~--~~~a~~ll~~m~~~~ 189 (295)
++ +.+..+|+.+. ..|...+-.... .+.+|..+..... +.++.++++.+.+.+
T Consensus 154 ~~e~l~~~~E~~Y~~L~-~~~f~kgn~LQ~--------------------LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~ 212 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLA-DAGFKKGNDLQF--------------------LSHILALSEGDDQEKVARVIELYNALKKNG 212 (297)
T ss_pred cHHHHHHHHHHHHHHHH-HhCCCCCcHHHH--------------------HHHHHHhccccchHHHHHHHHHHHHHHHcC
Confidence 43 44566777777 666655432110 1112222111111 557889999999999
Q ss_pred cCCChhHHHHH
Q 048764 190 RCVNEETGKII 200 (295)
Q Consensus 190 ~~p~~~t~~~l 200 (295)
+++....+..+
T Consensus 213 ~kik~~~yp~l 223 (297)
T PF13170_consen 213 VKIKYMHYPTL 223 (297)
T ss_pred CccccccccHH
Confidence 99888776543
No 98
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=95.08 E-value=0.62 Score=41.81 Aligned_cols=106 Identities=17% Similarity=0.150 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc------cHHHHHHHHHhcCCHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR------TYDPALFCFCENLEAQK 155 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~------ty~~ll~~~~~~g~~~~ 155 (295)
.++|.++|-+|.+.. +-+.-+--+|=+.|-+.|.+|.|+++...+. . +||.. ..--|-.-|..+|-+|.
T Consensus 51 ~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~-~---spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 51 PDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLL-E---SPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred cchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHh-c---CCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 459999999998822 1222333456678889999999999999887 2 45532 22234456778999999
Q ss_pred hhc-------HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCC
Q 048764 156 AYE-------EQ-----EITALLKVSAGTGRVEKVYQYLQKLRSTVRCV 192 (295)
Q Consensus 156 A~~-------e~-----~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p 192 (295)
|.. ++ ..-.|+..|-...+|++|.++-.++...+-++
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~ 174 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT 174 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence 988 23 36788999999999999999999988765443
No 99
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.06 E-value=1.4 Score=35.78 Aligned_cols=114 Identities=17% Similarity=0.134 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRL-S-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p-d-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+-..+.+.|++++|+..|++..+....+ + ...+..+-..+...+. +++|...|.+..... +-+..
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~ 107 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE--------HDKALEYYHQALELN-PKQPS 107 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cccHH
Confidence 56666777788899999999998887654322 2 2344444444444442 888888888877642 22455
Q ss_pred HHHHHHHHHHcCCC--------------HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC
Q 048764 103 LVTSVARLAASKKD--------------SDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLE 152 (295)
Q Consensus 103 ty~~li~~~~~~g~--------------~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~ 152 (295)
.+..+...|...|+ +++|.+++.... . ..|+. |..++.-+...|.
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-R--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-h--hCchh--HHHHHHHHHhcCc
Confidence 66666667766665 345555555544 2 23443 5556555554443
No 100
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.00 E-value=1.3 Score=34.52 Aligned_cols=88 Identities=23% Similarity=0.183 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
....+|..+.+.+.....+.+++.+...+ ..+...+|.+|.+++..+ ..+....+.. .++....
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~---------~~~ll~~l~~------~~~~yd~ 72 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD---------PQKEIERLDN------KSNHYDI 72 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC---------HHHHHHHHHh------ccccCCH
Confidence 34566777777777888888888877666 366677777887666554 3344444442 1222233
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.-+++.|-+.+-++++.-++..+.
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~ 96 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDG 96 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhc
Confidence 335555555555555555555544
No 101
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.97 E-value=1 Score=36.31 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRL--SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p--d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+...+...|++++|+..|.........| ...+|..+-.++...+. .++|...|+...... +....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~--------~~eA~~~~~~Al~~~-~~~~~ 107 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE--------HTKALEYYFQALERN-PFLPQ 107 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cCcHH
Confidence 77778888888999999999999987653222 22455555454544442 999999999987642 23345
Q ss_pred HHHHHHHHHH-------cCCCHHHHHHHHHHh
Q 048764 103 LVTSVARLAA-------SKKDSDYAFELIKRM 127 (295)
Q Consensus 103 ty~~li~~~~-------~~g~~~~A~~l~~~M 127 (295)
+++.+...+. ..|+++.|...+++-
T Consensus 108 ~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6677777777 788888776666543
No 102
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.81 E-value=3.2 Score=38.15 Aligned_cols=165 Identities=10% Similarity=0.053 Sum_probs=117.8
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 18 TNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 18 ~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
-+..|...|-.-..+--+.||.+.+-.++.+..+..-.++...+-+.-. +..+++ ++.|..-.++..+.+
T Consensus 113 ~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d---------~~aA~~~v~~ll~~~ 183 (400)
T COG3071 113 HGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD---------YPAARENVDQLLEMT 183 (400)
T ss_pred cCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC---------chhHHHHHHHHHHhC
Confidence 3444555666667777777888888888887776533444444444444 444454 777887777777654
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-------ccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-------RTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-------~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
. -+........+.|.+.|++.....++..|. +.|+--|. .+|+.+++-....+..+.-..
T Consensus 184 p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~-ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~ 261 (400)
T COG3071 184 P-RHPEVLRLALRAYIRLGAWQALLAILPKLR-KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN 261 (400)
T ss_pred c-CChHHHHHHHHHHHHhccHHHHHHHHHHHH-HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc
Confidence 3 456778899999999999999999999999 88865553 478888888777777666222
Q ss_pred HHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC
Q 048764 159 EQE-ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 159 e~~-y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
+++ -.+++.-+.+.|+.++|.+++.+-......|+
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~ 297 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR 297 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh
Confidence 333 46777778899999999999988777666665
No 103
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.71 E-value=1.5 Score=41.16 Aligned_cols=154 Identities=15% Similarity=0.215 Sum_probs=84.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcC
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI-PNEALVTSVARLAASK 114 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~-pd~~ty~~li~~~~~~ 114 (295)
+|+++.|...|.+.....-.-....||.=|.+=+.+. +++|+..|-.+.. +- -+..+.--+.+.|-..
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~---------ldeald~f~klh~--il~nn~evl~qianiye~l 571 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN---------LDEALDCFLKLHA--ILLNNAEVLVQIANIYELL 571 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC---------HHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHh
Confidence 5677777777777764432222223333222223333 6666666655432 10 1233333444455555
Q ss_pred CCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc-----------------------------------
Q 048764 115 KDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE----------------------------------- 158 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~----------------------------------- 158 (295)
.++..|++++-+.. .+.|+ ....+-|-..|-+.|+-..|++
T Consensus 572 ed~aqaie~~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 572 EDPAQAIELLMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred hCHHHHHHHHHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 55666666554332 33343 3345555555666666666665
Q ss_pred ----------HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 159 ----------EQEITALLKV-SAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 ----------e~~y~~ll~~-~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
...|..||.. +.+.|++.+|+++++...+. +.-+..+...|.+..
T Consensus 649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 1127777765 45689999999999998653 344566777777665
No 104
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.69 E-value=0.065 Score=38.03 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 048764 36 SKDLATAISLYESALSLNF-RLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS 113 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~-~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~ 113 (295)
.|+++.|+.+|+++.+..- .++...+-.+-. ++..+. +++|..+++. .+.+. .+....-.+-.+|.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~---------y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK---------YEEAIELLQK-LKLDP-SNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH---------HHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC---------HHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHH
Confidence 4667777777777765532 122222222333 333333 7777777766 22111 122222233556667
Q ss_pred CCCHHHHHHHHHH
Q 048764 114 KKDSDYAFELIKR 126 (295)
Q Consensus 114 ~g~~~~A~~l~~~ 126 (295)
.|++++|+.+|++
T Consensus 71 l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 71 LGKYEEAIKALEK 83 (84)
T ss_dssp TT-HHHHHHHHHH
T ss_pred hCCHHHHHHHHhc
Confidence 7777777777654
No 105
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.65 E-value=0.18 Score=39.68 Aligned_cols=98 Identities=21% Similarity=0.285 Sum_probs=61.5
Q ss_pred HHhcCCHHHHHHHHHHHHhc--C-CCCCHH------------------hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHH
Q 048764 33 CTKSKDLATAISLYESALSL--N-FRLSLH------------------HFNALLYLCSNSATDPSLKDSALRHGFRVFDQ 91 (295)
Q Consensus 33 ~~~~g~~~~A~~lf~~m~~~--g-~~pd~~------------------ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~ 91 (295)
....++...+...+.++... | +-|+.. +...++..+...+ ..++|..+...
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~ 87 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAG--------DYEEALRLLQR 87 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CHHHHHHHHHH
Confidence 35567888888888877632 2 333321 1112222122222 38899999998
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCCCCCccc
Q 048764 92 MLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN----EFNVVPRLRT 139 (295)
Q Consensus 92 M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi~P~~~t 139 (295)
+.... |-|+..|-.+|.+|...|+...|.++|+.+.. ..|+.|+..|
T Consensus 88 ~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 88 ALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 87743 46899999999999999999999999998753 5699998765
No 106
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=94.63 E-value=1 Score=45.28 Aligned_cols=159 Identities=15% Similarity=0.113 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhH-------HHHHHHHHcCCCCCC-------------cchHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHF-------NALLYLCSNSATDPS-------------LKDSALRH 84 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty-------~~ll~~~~~~~~~~~-------------~~~~~~~~ 84 (295)
+++.++..|.+...++.|+.....+...-..+|..-+ ...+..|..++..++ .+. .+.
T Consensus 318 d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~--~e~ 395 (895)
T KOG2076|consen 318 DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKE--REL 395 (895)
T ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccc--cch
Confidence 8889999999999999999998888773333333222 000111111111000 011 223
Q ss_pred HHHHHHHHHhCCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----
Q 048764 85 GFRVFDQMLSNNVI--PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---- 158 (295)
Q Consensus 85 a~~lf~~M~~~g~~--pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---- 158 (295)
...+..-.....+. -+.-.|.-+.++|-..|++.+|+.+|.... ..-.--+...|-.+-.+|-..|..+.|.+
T Consensus 396 ~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~-~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 396 LEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPIT-NREGYQNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred HHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHh-cCccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 33344444455544 356679999999999999999999999998 65555667789999999999999999998
Q ss_pred ----HHH-H---HHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 159 ----EQE-I---TALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 159 ----e~~-y---~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.|. + .+|-..+-+.|+.++|.+.+..|.
T Consensus 475 vl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 475 VLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 221 3 344445778999999999999975
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=94.62 E-value=2 Score=43.21 Aligned_cols=120 Identities=8% Similarity=-0.006 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHH-HHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNA-LLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~-ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.+.-|-..-.+.|.+++|..+++...+. .||-...-. +...+.+.+. +++|+..+++..... +-+...
T Consensus 88 ~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~--------~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 88 FQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQG--------IEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhcc--------HHHHHHHHHHHhhcC-CCCHHH
Confidence 6667777788889999999999988764 565544444 4445655552 999999999988743 234566
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.+.+-.++.+.|++++|.++|++.. .. -|+ ..++..+-.++-..|+.++|..
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~-~~--~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLS-RQ--HPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH-hc--CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777788889999999999999998 53 344 5677777888888999998877
No 108
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=1 Score=42.66 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
+|-+-=+.+.-.+++++|..=|++..+-. +-+++.|--+-. +|..+. ++++...|++-+++ +|--.-.
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k---------~~~~m~~Fee~kkk-FP~~~Ev 464 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHK---------IAESMKTFEEAKKK-FPNCPEV 464 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHh-CCCCchH
Confidence 44444444444445555555555554321 223334433333 333343 88888999987663 4444667
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC--cc--cHHHHHH----HHHhcCCHHHhhc------------HHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPR--LR--TYDPALF----CFCENLEAQKAYE------------EQEIT 163 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~--~~--ty~~ll~----~~~~~g~~~~A~~------------e~~y~ 163 (295)
||-.-..+.-.++++.|.+.|+.-. . +.|+ .+ .-.++|+ .+--.+++..|.+ +-.|.
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai-~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~ 541 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAI-E--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYE 541 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHH-h--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHH
Confidence 8888888888999999999998766 2 2233 11 1111111 1123467776666 33488
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+|-..-...|++++|.++|++-..
T Consensus 542 tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 542 TLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888889999999999999988543
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.46 E-value=1 Score=39.31 Aligned_cols=110 Identities=12% Similarity=0.092 Sum_probs=78.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH----HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY----LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~----~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
+..+.|..+++-|.....+|.+-. +-.|.+-|-. +...+. .+.+|+-+|++|-+ ..+|+..+.|
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge--------k~qdAfyifeE~s~-k~~~T~~lln 211 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE--------KIQDAFYIFEELSE-KTPPTPLLLN 211 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch--------hhhhHHHHHHHHhc-ccCCChHHHc
Confidence 445567778899999999998543 4466665544 333344 49999999999965 4679999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCH
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEA 153 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~ 153 (295)
.+..++-..|++++|..++++.. ... .-+..|..-+|.+--..|.-
T Consensus 212 G~Av~~l~~~~~eeAe~lL~eaL-~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 212 GQAVCHLQLGRYEEAESLLEEAL-DKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHH-hcc-CCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999988 433 12233444444444444443
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.18 E-value=2.3 Score=36.93 Aligned_cols=142 Identities=8% Similarity=-0.037 Sum_probs=85.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
=..+.-.|+-+.++.+..+.... -+-|....+.+.. ....+. +..|...|.+... .-++|..+||.+=
T Consensus 73 a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~---------~~~A~~~~rkA~~-l~p~d~~~~~~lg 141 (257)
T COG5010 73 ATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGN---------FGEAVSVLRKAAR-LAPTDWEAWNLLG 141 (257)
T ss_pred HHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcc---------hHHHHHHHHHHhc-cCCCChhhhhHHH
Confidence 34445556666666665543321 2334344444555 445555 7777777777654 3357777777777
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc--HHH----------HHHHHHHHHhcCCH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE--EQE----------ITALLKVSAGTGRV 175 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~--e~~----------y~~ll~~~~~~g~~ 175 (295)
-+|.+.|+.+.|..-|.+-. + +.|+ ...+|-|.-.|.-.|+.+.|.. .+. -..|.-.....|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl-~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQAL-E--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHH-H--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence 77777777777777776655 2 2233 2345566666667777777776 111 34455556677888
Q ss_pred HHHHHHHHHH
Q 048764 176 EKVYQYLQKL 185 (295)
Q Consensus 176 ~~a~~ll~~m 185 (295)
++|.++...-
T Consensus 219 ~~A~~i~~~e 228 (257)
T COG5010 219 REAEDIAVQE 228 (257)
T ss_pred HHHHhhcccc
Confidence 8888776553
No 111
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.12 E-value=3.4 Score=35.45 Aligned_cols=157 Identities=16% Similarity=0.128 Sum_probs=113.9
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
...|+. +|..+-..|-+.|+.+.|.+-|++..+.. +-+....|..=- +|+++. +++|..-|+.-...
T Consensus 63 ~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~---------~~eA~q~F~~Al~~ 132 (250)
T COG3063 63 EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR---------PEEAMQQFERALAD 132 (250)
T ss_pred HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC---------hHHHHHHHHHHHhC
Confidence 344554 99999999999999999999999887653 223445555555 899997 99999999988774
Q ss_pred CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHH
Q 048764 96 NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEI 162 (295)
Q Consensus 96 g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y 162 (295)
-. .--..||..+--...+.|+.+.|.+.|..-. ... .-...+.-.+..-..+.|+...|.. ....
T Consensus 133 P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL-~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL 210 (250)
T COG3063 133 PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL-ELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESL 210 (250)
T ss_pred CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH-HhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHH
Confidence 32 2234678888777788999999999999987 443 2334567778888889999888876 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
--.|+.-.+.|+.+.+.++=..+.+
T Consensus 211 ~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 211 LLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555566777776666655554
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.07 E-value=2.9 Score=35.46 Aligned_cols=140 Identities=17% Similarity=0.119 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH-HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLSL-HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE- 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~-~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~- 101 (295)
.+..+-..+.+.|++++|+..|+++.+..- .|.. .++..+-..+...........+..+.|.+.|+.+.... |+.
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 149 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSE 149 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCCh
Confidence 566677889999999999999999986532 1221 12222222222221111223356889999999997743 332
Q ss_pred HHHH-----------------HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHH
Q 048764 102 ALVT-----------------SVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITA 164 (295)
Q Consensus 102 ~ty~-----------------~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ 164 (295)
..+. .+-..|.+.|++++|...|.... .. .|+..-+ .+ .+..
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~-------------~~-----a~~~ 208 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVV-EN--YPDTPAT-------------EE-----ALAR 208 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HH--CCCCcch-------------HH-----HHHH
Confidence 2221 23445666788888888888776 32 2332100 00 1445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+..++...|+.++|..+++.+..
T Consensus 209 l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 209 LVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 66667777777777777777654
No 113
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.02 E-value=0.042 Score=39.01 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048764 80 SALRHGFRVFDQMLSNNV-IPNEALVTSVARLAASKKDSDYAFELIKR 126 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~ 126 (295)
+.++.|..+|+.+.+... .|+...+-.+..+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 458999999999987543 23455555688999999999999999988
No 114
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=93.98 E-value=2.6 Score=38.14 Aligned_cols=93 Identities=14% Similarity=0.058 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
...|.++-.+.. | ||..-|-..|++++..+++++-..+... .-. .+-|-+.+.+|.+.|...+|..
T Consensus 193 ~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKs--PIGyepFv~~~~~~~~~~eA~~yI~ 261 (319)
T PF04840_consen 193 EKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS-----KKS--PIGYEPFVEACLKYGNKKEASKYIP 261 (319)
T ss_pred HHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCC--CCChHHHHHHHHHCCCHHHHHHHHH
Confidence 667777765553 3 8889999999999999999876664332 113 3889999999999999888887
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...+..-+..|.+.|++.+|.+.-.+.
T Consensus 262 k~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 262 KIPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred hCChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 333577888888889888887665543
No 115
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.94 E-value=1.6 Score=39.44 Aligned_cols=155 Identities=12% Similarity=0.043 Sum_probs=111.5
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLI-SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~-li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
-|.. +=..|.+.|.+.+|...|.....+--.| .||-.|-..|.+-+ +...|+.+|.+-+. ..|-.+|
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~--dTfllLskvY~rid--------QP~~AL~~~~~gld--~fP~~VT 291 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP--DTFLLLSKVYQRID--------QPERALLVIGEGLD--SFPFDVT 291 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch--hHHHHHHHHHHHhc--------cHHHHHHHHhhhhh--cCCchhh
Confidence 4444 4567788999999999999887765444 46666666888887 48899999998765 3466666
Q ss_pred H-HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH-HHHHHHHHH
Q 048764 104 V-TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE-ITALLKVSA 170 (295)
Q Consensus 104 y-~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~-y~~ll~~~~ 170 (295)
| .-+.+.+-..++.++|.++++... +.. .-|+....++-.+|.=.++.+.|+. .++ |+.+--+|.
T Consensus 292 ~l~g~ARi~eam~~~~~a~~lYk~vl-k~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 292 YLLGQARIHEAMEQQEDALQLYKLVL-KLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHH-hcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 5 457778888999999999999987 443 3466667777778888888888877 333 555555555
Q ss_pred hcCCHHHHHHHHHHHHHcccCCC
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
-.+.+|-++.-|.+-...--+|+
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~ 392 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPG 392 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcc
Confidence 66777777777776655544444
No 116
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.89 E-value=0.4 Score=37.70 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~l 181 (295)
.+...++..+...|+++.|..+...+. ... .-|... |..+|.+|...|+...|.++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l-~~d-P~~E~~----------------------~~~lm~~~~~~g~~~~A~~~ 118 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRAL-ALD-PYDEEA----------------------YRLLMRALAAQGRRAEALRV 118 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH-HHS-TT-HHH----------------------HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH-hcC-CCCHHH----------------------HHHHHHHHHHCcCHHHHHHH
Confidence 345555555556666666666666665 332 122333 66777778888888888877
Q ss_pred HHHHH-----HcccCCChhHHHHHHH
Q 048764 182 LQKLR-----STVRCVNEETGKIIED 202 (295)
Q Consensus 182 l~~m~-----~~~~~p~~~t~~~l~~ 202 (295)
+.++. +.|+.|++.|-.+...
T Consensus 119 Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 119 YERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHHHHHHHHHS----HHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 77753 4588999888766543
No 117
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=6.2 Score=37.29 Aligned_cols=146 Identities=13% Similarity=0.115 Sum_probs=108.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
+=+-|+-.++.+.|...|....+-+ +-....|+.+=+=|..-.. ...|.+-|..-++-+ +.|-..|=.|=
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKN--------t~AAi~sYRrAvdi~-p~DyRAWYGLG 405 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKN--------THAAIESYRRAVDIN-PRDYRAWYGLG 405 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcc--------cHHHHHHHHHHHhcC-chhHHHHhhhh
Confidence 3344555667888888888877654 2233455555555554443 556777777665522 46888899999
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRV 175 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~ 175 (295)
.+|.-.+...-|+-+|++-. .++| |.+.|.+|=++|.+.+++++|.. ...|..|-+.+-+-++.
T Consensus 406 QaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred HHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999866 3455 67889999999999999999998 23488888899999999
Q ss_pred HHHHHHHHHHHH
Q 048764 176 EKVYQYLQKLRS 187 (295)
Q Consensus 176 ~~a~~ll~~m~~ 187 (295)
.+|...+.+-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999888887655
No 118
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=93.76 E-value=1.9 Score=34.97 Aligned_cols=113 Identities=14% Similarity=0.237 Sum_probs=63.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHH
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~ 154 (295)
..|.+++|...|++..+....|+ ...|..+...+.+.|++++|...+.+.. .. .|+ ...+..+-..|...|+..
T Consensus 47 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~ 123 (172)
T PRK02603 47 ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-EL--NPKQPSALNNIAVIYHKRGEKA 123 (172)
T ss_pred HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CcccHHHHHHHHHHHHHcCChH
Confidence 44567778888887766433222 3567777777777888888888777776 32 343 333444444555555554
Q ss_pred HhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHh
Q 048764 155 KAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFS 205 (295)
Q Consensus 155 ~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~ 205 (295)
.+.... .. ....+++|.+++.+... .++..+..+..|+.
T Consensus 124 ~a~~~~--~~------A~~~~~~A~~~~~~a~~----~~p~~~~~~~~~~~ 162 (172)
T PRK02603 124 EEAGDQ--DE------AEALFDKAAEYWKQAIR----LAPNNYIEAQNWLK 162 (172)
T ss_pred hHhhCH--HH------HHHHHHHHHHHHHHHHh----hCchhHHHHHHHHH
Confidence 433210 00 01125666677666554 23444555666663
No 119
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.75 E-value=0.28 Score=49.60 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 048764 37 KDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKD 116 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~ 116 (295)
+..+.|+.+|.+..+.. +-|.+.-|.+=-.++..+ .+.+|..||.+..+... -+..+|-.+-+.|...|+
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg--------~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~q 695 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKG--------RFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQ 695 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhcc--------CchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHH
Confidence 34677888887776553 445555555444333333 49999999999988654 344578889999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH--HHHHHHH---------------
Q 048764 117 SDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE--ITALLKV--------------- 168 (295)
Q Consensus 117 ~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~--y~~ll~~--------------- 168 (295)
+..|+++|+.......-.-+....+.|-.++.+.|.+.+|.. ++. ||..+-.
T Consensus 696 y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~ 775 (1018)
T KOG2002|consen 696 YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTL 775 (1018)
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccH
Confidence 999999999865355544556667888899999999999888 111 2222111
Q ss_pred ---HHhcCCHHHHHHHHHHHHHcccC
Q 048764 169 ---SAGTGRVEKVYQYLQKLRSTVRC 191 (295)
Q Consensus 169 ---~~~~g~~~~a~~ll~~m~~~~~~ 191 (295)
....+.++.|.++|.+|...+-.
T Consensus 776 eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 776 EEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11234577888899998887655
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.71 E-value=5.5 Score=40.06 Aligned_cols=119 Identities=10% Similarity=-0.038 Sum_probs=88.0
Q ss_pred CCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 55 RLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 55 ~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
+.++..+-.|-. .-..+. +++|..+++...+. .|| ......+...+.+.+++++|+..++... ..
T Consensus 83 ~~~~~~~~~La~i~~~~g~---------~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l-~~- 149 (694)
T PRK15179 83 PHTELFQVLVARALEAAHR---------SDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYF-SG- 149 (694)
T ss_pred cccHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh-hc-
Confidence 344555555555 333344 89999999998873 455 6677889999999999999999999987 43
Q ss_pred CCCCcccH-HHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 133 VVPRLRTY-DPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 133 i~P~~~ty-~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.|+..+. ..+-.++...|+.++|.. +..+..+=.++...|+.++|...|++-..
T Consensus 150 -~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 150 -GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5776654 455556778899999888 22366666678888999999999888754
No 121
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.70 E-value=1.2 Score=41.81 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+-.+-+-|-...+...|++++-+...- ++-|....+.|-.+|-+.++ -..|+..+-+-- +-++-|..|.
T Consensus 560 vl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegd--------ksqafq~~ydsy-ryfp~nie~i 629 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGD--------KSQAFQCHYDSY-RYFPCNIETI 629 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccc--------hhhhhhhhhhcc-cccCcchHHH
Confidence 3444455666677888888888665432 56677888888888877663 445555544321 2244566777
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH-hcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC-ENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~-~~g~~~~A~~ 158 (295)
..|-.-|....-+++|+.+|+.-. =+.|+..-|..+|..|. ++|+..+|++
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 777777777777778888877643 45788888877776554 5678888777
No 122
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=93.66 E-value=2 Score=43.74 Aligned_cols=160 Identities=14% Similarity=0.167 Sum_probs=107.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHHcCCC----CCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHH
Q 048764 32 SCTKSKDLATAISLYESALSL-NFRLSLHHFNALLYLCSNSAT----DPSLKDSALRHGFRVFDQMLSNNVIPNEALVTS 106 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~-g~~pd~~ty~~ll~~~~~~~~----~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~ 106 (295)
.|.+...+..|-.-|+...+. -..+|+++.-+|=+.|-.... .+-...++.++|+.+|.+.+... +.|...-|.
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccc
Confidence 444444444444444433222 123455555555553332221 11123456899999999998754 467888888
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--H------------HHHHHHHHHHHhc
Q 048764 107 VARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--E------------QEITALLKVSAGT 172 (295)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--e------------~~y~~ll~~~~~~ 172 (295)
+--.++..|++..|.++|.+.+ .... -+.-+|--+-++|...|++..|.+ + ...+.|-+++-+.
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVr-Ea~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVR-EATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHH-HHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 8889999999999999999998 5542 344578889999999999999998 1 1156777788888
Q ss_pred CCHHHHHHHHHHHHHcccCCChhH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNEET 196 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~~t 196 (295)
|.+.+|.+.+..-+.. .|...+
T Consensus 730 ~~~~eak~~ll~a~~~--~p~~~~ 751 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHL--APSNTS 751 (1018)
T ss_pred hhHHHHHHHHHHHHHh--CCccch
Confidence 9999998887776553 454433
No 123
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.64 E-value=2.5 Score=32.43 Aligned_cols=102 Identities=19% Similarity=0.200 Sum_probs=68.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH---HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----HHHH
Q 048764 32 SCTKSKDLATAISLYESALSLNFRLSLHHFNALLY---LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN----EALV 104 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~---~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd----~~ty 104 (295)
++-..|+.++|+.+|++....|...+ .--..+|. .+...+ .+++|..+|++..... |+ ....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~--p~~~~~~~l~ 78 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLG--------RYDEALALLEEALEEF--PDDELNAALR 78 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHC--CCccccHHHH
Confidence 45667999999999999999886654 23344444 444444 3999999999887642 33 1222
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
..+--++...|+.++|+..+-.-. .++...|.--|..|..
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~l-----a~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEAL-----AETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHh
Confidence 223336677899999998887765 3444477777777653
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=93.62 E-value=1.1 Score=38.87 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
..+.++....+.|++..|+..|.+...- -++|...||.+=-.|.+.+. ++.|..-|.+-.+--. -+-..+
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr--------~~~Ar~ay~qAl~L~~-~~p~~~ 171 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR--------FDEARRAYRQALELAP-NEPSIA 171 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC--------hhHHHHHHHHHHHhcc-CCchhh
Confidence 5666889999999999999999998754 48899999988888877664 8999999998877322 233567
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|.|--.|.-.|+++.|..++..-. ..+ .-|...-.-|.-.....|+++.|..
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~-l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAY-LSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHH-hCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 778888888999999999999887 555 3355556667778889999999988
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=93.34 E-value=1.6 Score=32.17 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcH
Q 048764 82 LRHGFRVFDQMLSNNV--IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEE 159 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e 159 (295)
+++|.+.|..+....- +.....+..+...+.+.|+++.|..+|+... ... |+.......
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--p~~~~~~~~---------------- 78 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV-KKY--PKSPKAPDA---------------- 78 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH-HHC--CCCCcccHH----------------
Confidence 9999999999976431 1123466678889999999999999999987 432 442211000
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 160 QEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 160 ~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+..+-..+...|+.++|..++.++...
T Consensus 79 --~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 79 --LLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred --HHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 223344466778888888888888775
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.88 E-value=11 Score=39.03 Aligned_cols=161 Identities=12% Similarity=0.035 Sum_probs=97.9
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHHcCCCCC---------CcchHHHHHHH
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSL-NFRLSLHHFNALLYLCSNSATDP---------SLKDSALRHGF 86 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~ty~~ll~~~~~~~~~~---------~~~~~~~~~a~ 86 (295)
...|.. .|..||..+-..+++++|..+.+...+. .-.+..+-|..+|.. .....+. ......+.-+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhhhhhhhcccccchhHHH
Confidence 344443 9999999999999999999999965543 233444444444332 2222111 01111233333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHH
Q 048764 87 RVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALL 166 (295)
Q Consensus 87 ~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll 166 (295)
.++..|... .-+...+-.|..+|-+.|+.++|..+++++. ... .-|....|-+-..|+.. ++++|.. -|.-.+
T Consensus 104 ~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D-~~n~~aLNn~AY~~ae~-dL~KA~~--m~~KAV 176 (906)
T PRK14720 104 HICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLV-KAD-RDNPEIVKKLATSYEEE-DKEKAIT--YLKKAI 176 (906)
T ss_pred HHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHh-hHHHHHH--HHHHHH
Confidence 344444442 2233567778888888999999999999999 777 45566778888888888 9999877 111222
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 048764 167 KVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+....++..+++++.++..
T Consensus 177 ~~~i~~kq~~~~~e~W~k~~~ 197 (906)
T PRK14720 177 YRFIKKKQYVGIEEIWSKLVH 197 (906)
T ss_pred HHHHhhhcchHHHHHHHHHHh
Confidence 223344444555555554443
No 127
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.86 E-value=0.49 Score=31.42 Aligned_cols=47 Identities=17% Similarity=0.175 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+++|..+|++.++.. +-+...+..+-..+...|++++|..+|++..
T Consensus 12 ~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4999999999999876 3367888889999999999999999999987
No 128
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=92.72 E-value=6.2 Score=37.51 Aligned_cols=101 Identities=13% Similarity=0.101 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
+..|++||+.-.+ ..||...|++.|+--.+-...+.|..+++... -+-|++.+|---..-=-+.|.+..|..
T Consensus 157 i~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV---~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 157 IAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFV---LVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred cHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh---eecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6677777776654 46999999999999888889999999999876 345888888887777778888777766
Q ss_pred --------HHHHHHHHHHH----HhcCCHHHHHHHHHHHHH
Q 048764 159 --------EQEITALLKVS----AGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 --------e~~y~~ll~~~----~~~g~~~~a~~ll~~m~~ 187 (295)
+..-..|+-++ .+...++.|..+++--..
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222333333 345566677766665544
No 129
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.53 E-value=8.7 Score=35.53 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH---HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY---LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~---~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
..+-++ .|....+++.-+++.+.|....... .+-+..|. +++-.+. .+.|..++|+.++..++...-.++.
T Consensus 144 v~~lll-SyRdiqdydamI~Lve~l~~~p~~~--~~~~~~i~~~yafALnRr---n~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 144 VINLLL-SYRDIQDYDAMIKLVETLEALPTCD--VANQHNIKFQYAFALNRR---NKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred HHHHHH-HhhhhhhHHHHHHHHHHhhccCccc--hhcchHHHHHHHHHHhhc---ccCCCHHHHHHHHHHHHhccCCCCh
Confidence 344444 5999999999999999998653211 11122211 2222221 1233589999999997776677777
Q ss_pred HHHHHHHHHHHc---------CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh----c----------
Q 048764 102 ALVTSVARLAAS---------KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY----E---------- 158 (295)
Q Consensus 102 ~ty~~li~~~~~---------~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~----~---------- 158 (295)
.||-.+-+.|-. ....++|...|.+ .+.+.||.++=--+...+.-+|...... +
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~k---gFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg 294 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRK---GFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG 294 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHH---HHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH
Confidence 788777665543 2246777777765 4556677655322333333333221111 1
Q ss_pred -------HH---HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 -------EQ---EITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 -------e~---~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+. ++.+++.++.-.|+.++|.+..++|...
T Consensus 295 ~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 295 RKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11 1689999999999999999999999876
No 130
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=92.44 E-value=0.56 Score=31.36 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=46.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 34 TKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
.+.|++++|+.+|+++.... +-|...+-.+..++...+. +++|..+++.+.... ||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~--------~~~A~~~l~~~~~~~--~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQ--------YDEAEELLERLLKQD--PDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT---------HHHHHHHHHCCHGGG--TTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC--cCHHHHHHHH
Confidence 46799999999999998763 3355666666675555552 999999999988743 6656665554
No 131
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=2.4 Score=37.54 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=82.9
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
.|.|. .|--|=..|...|+++.|+.-|....+- -++|...+..+-. ++...+.. .-.++..+|++++....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~------~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQ------MTAKARALLRQALALDP 224 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCc------ccHHHHHHHHHHHhcCC
Confidence 33444 9999999999999999999999987754 1344455555555 33333311 16789999999987432
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
-|+.+-.-|-..+...|++.+|...++.|. +. -|....+..+|..-
T Consensus 225 -~~iral~lLA~~afe~g~~~~A~~~Wq~lL-~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 225 -ANIRALSLLAFAAFEQGDYAEAAAAWQMLL-DL--LPADDPRRSLIERS 270 (287)
T ss_pred -ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hc--CCCCCchHHHHHHH
Confidence 344455556668889999999999999999 44 46666777777643
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=92.37 E-value=1.9 Score=39.62 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A 156 (295)
..+.+++|..+|.+..+..- -+...|..+-.+|.+.|++++|+..++... .. .|+ ...|..+-.+|...|+.+.|
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l--~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAI-EL--DPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CcCCHHHHHHHHHHHHHhCCHHHH
Confidence 45668888888888877432 356777778888888888888888888877 43 343 33444444444444444444
No 133
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=7.5 Score=35.62 Aligned_cols=111 Identities=13% Similarity=0.095 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHH-HHHHHhcCCHHHhhc--
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPA-LFCFCENLEAQKAYE-- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~l-l~~~~~~g~~~~A~~-- 158 (295)
+++++..+..+...=..-|..-|| +..+++..|++.+|.++|-... .-.+ -|.++|-++ ..+|.+.+..+.|++
T Consensus 375 FddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is-~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 375 FDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRIS-GPEI-KNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhc-Chhh-hhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 445555555554433333333333 4455555666666666655544 2222 233444433 334555566555555
Q ss_pred -----HHH----HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 159 -----EQE----ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 159 -----e~~----y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
..+ ...+-+-|-+.+.+--|-..|+.+.. ..|+++.|
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 001 12222335555555555555555533 34555544
No 134
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.96 E-value=0.84 Score=40.85 Aligned_cols=94 Identities=5% Similarity=0.013 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN---FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g---~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
+-..++..-....+++.+..++-.++.+. ..|+. +-.+++++|-.-+ .+++..+...=.+.|+.||-
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllky~---------pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLKYD---------PQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHccC---------hHHHHHHHhCcchhccccch
Confidence 66677777777788888888887777543 33443 3345566666666 66888888887888888888
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.|++.||+.+.+.+++..|..+.-.|.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 888888888888888888877776665
No 135
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.68 E-value=3.1 Score=36.80 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
..... ...++|. |...++.+.|..+|+...+. ++-+..-|..-|. +...++ .+.|+.||+..... +
T Consensus 33 ~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d---------~~~aR~lfer~i~~-l 100 (280)
T PF05843_consen 33 CTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLND---------INNARALFERAISS-L 100 (280)
T ss_dssp S-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT----------HHHHHHHHHHHCCT-S
T ss_pred CCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCc---------HHHHHHHHHHHHHh-c
Confidence 34444 4455554 44467788899999998765 5667777888888 555555 99999999998875 4
Q ss_pred CCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 98 IPNE---ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 98 ~pd~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
.++. ..|...|+--.+.|+++.+..+.+.|. .. -|+..+...+++-|
T Consensus 101 ~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~-~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 101 PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE-EL--FPEDNSLELFSDRY 150 (280)
T ss_dssp SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH-HH--TTTS-HHHHHHCCT
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH--hhhhhHHHHHHHHh
Confidence 3332 499999999999999999999999988 43 46655555554433
No 136
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=12 Score=35.38 Aligned_cols=122 Identities=13% Similarity=0.076 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEA 102 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ 102 (295)
..|+-+=+-|..-.+...|..-|....+-. |.|-..|-.|=.+|.-.++ ..-|+-.|++-.+ ++| |..
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~M--------h~YaLyYfqkA~~--~kPnDsR 433 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKM--------HFYALYYFQKALE--LKPNDSR 433 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcc--------hHHHHHHHHHHHh--cCCCchH
Confidence 388888888999889999999988887653 5577777777777777774 4557777776554 334 678
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|.+|=..|.+-+++++|...|..-. ..| ..+...|..|-+.|-+-++..+|-.
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai-~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAI-LLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-hcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 89999999999999999999988877 555 3455778888888888888888776
No 137
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=91.33 E-value=15 Score=35.68 Aligned_cols=128 Identities=10% Similarity=0.087 Sum_probs=95.3
Q ss_pred CCCcHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 19 NPNPET---NFLISLQSCTKSKDLATAISLYESALSLNFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 19 ~~~p~~---t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
..+|.. +|.-+-..|-..|++++|+.+.++..+. .|+ +..|..--..+.+.+. +.+|.+.+++-.+
T Consensus 187 ~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~--------~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 187 KEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD--------LKEAAEAMDEARE 256 (517)
T ss_pred cCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHh
Confidence 345554 4455567788999999999999998876 344 4455555557877774 9999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccH--------HHHHHHHHhcCCHHHhhc
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTY--------DPALFCFCENLEAQKAYE 158 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty--------~~ll~~~~~~g~~~~A~~ 158 (295)
-.. -|...=|-.+..+-++|++++|..++.... ..+..|-...+ .-.-.+|.+.|+...|+.
T Consensus 257 LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft-r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 257 LDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFT-REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred CCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhc-CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 554 577777778888889999999999999988 66654433222 233467888999999888
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.06 E-value=2.3 Score=42.42 Aligned_cols=130 Identities=12% Similarity=0.146 Sum_probs=81.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARL 110 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~ 110 (295)
.+......+.+|+.+++.+.++.+.. .-|.-+-.-|+..+ .++.|.++|.+- ..++--|..
T Consensus 740 eaai~akew~kai~ildniqdqk~~s--~yy~~iadhyan~~--------dfe~ae~lf~e~---------~~~~dai~m 800 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTAS--GYYGEIADHYANKG--------DFEIAEELFTEA---------DLFKDAIDM 800 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhcccc--ccchHHHHHhccch--------hHHHHHHHHHhc---------chhHHHHHH
Confidence 33444555666677777666554322 23333444555554 399999998763 346778999
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
|.++|+++.|+.+-.+.- |-......|-+-..-+-+.|.+.+|.+ +|+ --|..|-++|..|.+.++..+
T Consensus 801 y~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~--~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPD--KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCch--HHHHHHHhhCcchHHHHHHHH
Confidence 999999999999876654 433444556666666667777777766 333 235556666666666555543
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=91.03 E-value=20 Score=36.61 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=80.8
Q ss_pred CCCcHhHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 19 NPNPETNFLISLQSCT--KSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 19 ~~~p~~t~~~li~~~~--~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.+.|+..|..++.++. |.|..++|+.+++.....+.. |.-|...|-+.|...+ +.++|..+|+....
T Consensus 37 kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~--------~~d~~~~~Ye~~~~-- 105 (932)
T KOG2053|consen 37 KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLG--------KLDEAVHLYERANQ-- 105 (932)
T ss_pred HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHh--------hhhHHHHHHHHHHh--
Confidence 4567777777777764 678899999888877665544 8888888888888777 48999999998765
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
..|++.-...+..+|++.+++.+-...--+|- +...-+.+.|.++++.+.
T Consensus 106 ~~P~eell~~lFmayvR~~~yk~qQkaa~~Ly--K~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 106 KYPSEELLYHLFMAYVREKSYKKQQKAALQLY--KNFPKRAYYFWSVISLIL 155 (932)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCcccchHHHHHHHHH
Confidence 45888888889999999887755333322222 122233445555555443
No 140
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=91.03 E-value=4.8 Score=32.32 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIP--NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFC 148 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~ 148 (295)
+++|...|.........| ...+|..+-..|...|++++|+..++... .. .|+. .++..+...+.
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al-~~--~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL-ER--NPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CcCcHHHHHHHHHHHH
Confidence 999999999887643222 23578888899999999999999998877 43 3432 33444444444
No 141
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=90.97 E-value=1.2 Score=30.66 Aligned_cols=67 Identities=15% Similarity=0.136 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc-CCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEF-NVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~-gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~ 179 (295)
..+|+.+-..|...|++++|+..|++.. .. ...++ ...-++.. |..|-..+...|+.++|.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~~~--~~~~~a~~---------------~~~lg~~~~~~g~~~~A~ 66 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKAL-DIEEQLGD--DHPDTANT---------------LNNLGECYYRLGDYEEAL 66 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH-HHHHHTTT--HHHHHHHH---------------HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHCC--CCHHHHHH---------------HHHHHHHHHHcCCHHHHH
Confidence 3578889999999999999999999887 32 11122 11111222 556666677788888888
Q ss_pred HHHHHH
Q 048764 180 QYLQKL 185 (295)
Q Consensus 180 ~ll~~m 185 (295)
+++++-
T Consensus 67 ~~~~~a 72 (78)
T PF13424_consen 67 EYYQKA 72 (78)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777764
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=90.93 E-value=15 Score=34.91 Aligned_cols=147 Identities=9% Similarity=-0.004 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
-+...+.+-........+-.++.+-.+ -.-...-|..-|..+..+. +++|+..+..+... .+-|..-+
T Consensus 276 ~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~~~~~~~~---------~d~A~~~l~~L~~~-~P~N~~~~ 343 (484)
T COG4783 276 LARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRALQTYLAGQ---------YDEALKLLQPLIAA-QPDNPYYL 343 (484)
T ss_pred HHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHHHHHHhcc---------cchHHHHHHHHHHh-CCCCHHHH
Confidence 555555544444333444333333222 1334567888888777777 88999999998763 33455566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~~ 171 (295)
......+...++.++|.+.++.+. . ..|+. ...-.+-++|.+.|+..+|.. .+ .|..|-.+|..
T Consensus 344 ~~~~~i~~~~nk~~~A~e~~~kal-~--l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 344 ELAGDILLEANKAKEAIERLKKAL-A--LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHH-h--cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 667778999999999999999998 4 35774 334455667788888887777 11 28888888888
Q ss_pred cCCHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLR 186 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~ 186 (295)
.|+..++..-..++-
T Consensus 421 ~g~~~~a~~A~AE~~ 435 (484)
T COG4783 421 LGNRAEALLARAEGY 435 (484)
T ss_pred hCchHHHHHHHHHHH
Confidence 888887776666543
No 143
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.89 E-value=8.7 Score=37.67 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=108.8
Q ss_pred CCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 18 TNPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 18 ~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
-...|.- +|+-+=+-+.....+|.|..-|... +.+|..+||..-. +.. +.+.++++.|.--|+.-.+
T Consensus 448 iQldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~v------y~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 448 IQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYGLGTV------YLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred hccCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHhhhhh------eeccchhhHHHHHHHhhhc
Confidence 3444543 6666666677778889998888766 5778899998866 211 1222348899988888765
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HH-H
Q 048764 95 NNVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQ-E 161 (295)
Q Consensus 95 ~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~-~ 161 (295)
+.| |.+....+...+-+.|+.|+|+++|++-. ...- -|..+----...+...++.++|+. |. .
T Consensus 518 --INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~-~ld~-kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v 593 (638)
T KOG1126|consen 518 --INPSNSVILCHIGRIQHQLKRKDKALQLYEKAI-HLDP-KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSV 593 (638)
T ss_pred --CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH-hcCC-CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence 434 56777777788888999999999999977 4432 222222223445666788888888 11 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
|..|-..|.+.|+.+.|+.-|.-+.+
T Consensus 594 ~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 594 FALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHHccchHHHHhhHHHhc
Confidence 78888889999999998876666654
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.72 E-value=8.1 Score=33.95 Aligned_cols=93 Identities=10% Similarity=0.028 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-- 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-- 97 (295)
.|...+....+.|++++|+..|+.+.+.- |+. ..+--|-. ++..++ +++|...|..+.+.-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~---------~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGK---------KDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHCCCC
Confidence 89999988888899999999999988653 221 22223333 445555 9999999999986321
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+.....+--+...+-..|+.+.|..+|+...
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1123334444556778999999999999887
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.65 E-value=8 Score=37.27 Aligned_cols=135 Identities=12% Similarity=0.209 Sum_probs=92.0
Q ss_pred HHHHHHHHHHh-cCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCCHH
Q 048764 41 TAISLYESALS-LNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEALVTSVARLAASKKDSD 118 (295)
Q Consensus 41 ~A~~lf~~m~~-~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ty~~li~~~~~~g~~~ 118 (295)
.....++++.. ..+.|+ .+|-.+|+.-.+... +..|+.||.+..+.+..+ ++.+++++|.-||. +|..
T Consensus 349 ~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eG--------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~ 418 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEG--------LKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKE 418 (656)
T ss_pred hhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhh--------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChh
Confidence 33444444442 234444 456666674444332 899999999999988888 89999999998886 4789
Q ss_pred HHHHHHHH-hhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------------HHHHHHHHHHHHhcCCHHHHHHHH
Q 048764 119 YAFELIKR-MNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------------EQEITALLKVSAGTGRVEKVYQYL 182 (295)
Q Consensus 119 ~A~~l~~~-M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------------e~~y~~ll~~~~~~g~~~~a~~ll 182 (295)
-|+++|+- |+ .+|=.|-.+ ...++-+.+.++-..+.. .+.|..+|+.=...|++.-++.+-
T Consensus 419 ~AfrIFeLGLk-kf~d~p~yv--~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~le 495 (656)
T KOG1914|consen 419 TAFRIFELGLK-KFGDSPEYV--LKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLE 495 (656)
T ss_pred HHHHHHHHHHH-hcCCChHHH--HHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999985 55 665444322 234444445454333332 234999999999999999999998
Q ss_pred HHHHHc
Q 048764 183 QKLRST 188 (295)
Q Consensus 183 ~~m~~~ 188 (295)
+++...
T Consensus 496 kR~~~a 501 (656)
T KOG1914|consen 496 KRRFTA 501 (656)
T ss_pred HHHHHh
Confidence 887654
No 146
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.63 E-value=16 Score=38.15 Aligned_cols=159 Identities=17% Similarity=0.219 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHhHHHHHHHHHcCCCC-------------------CCcchHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN--FRLSLHHFNALLYLCSNSATD-------------------PSLKDSALR 83 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g--~~pd~~ty~~ll~~~~~~~~~-------------------~~~~~~~~~ 83 (295)
.-+..+.++...+-..+-++++++..-.+ +.-+...-|.||--.-+.+.. .+..++-++
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 34455677777888888888888876332 222222233333211122210 124566789
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----
Q 048764 84 HGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----- 158 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----- 158 (295)
+|+.+|+.-- .+....+.||. .-+.+|.|.++-+... .|. .|+-+-.+-...|.+.+|.+
T Consensus 1066 EAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n-----~p~--vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1066 EAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN-----EPA--VWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC-----ChH--HHHHHHHHHHhcCchHHHHHHHHhc
Confidence 9999998753 46677777776 5567889988887776 555 68888888888899988888
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 198 (295)
...|.-+|+...+.|.+++...++..-+...+.|...+.-
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eL 1172 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSEL 1172 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHH
Confidence 2349999999999999999999998888888888766543
No 147
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=90.55 E-value=6 Score=37.57 Aligned_cols=145 Identities=13% Similarity=0.192 Sum_probs=115.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 35 KSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
...|++.+..+|....+ =+|-..+||..+=-+++.-. .++..+..|++++..-. |.-|-..+|-.-|..-.+-
T Consensus 378 e~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~fe----IRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFE----IRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHH----HHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 35788889999988887 47778889988866666532 12223888999988754 6679999999999999999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------------HHHHHHHHHHHHhcCCHHHHHH
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------------EQEITALLKVSAGTGRVEKVYQ 180 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------------e~~y~~ll~~~~~~g~~~~a~~ 180 (295)
+++|.+..+++... ..+ .-|..+|.-.-..=...|+.+.|.. +--|-+.|+.=...|.+++|..
T Consensus 451 ~efDRcRkLYEkfl-e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 451 REFDRCRKLYEKFL-EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred hhHHHHHHHHHHHH-hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 99999999999998 766 4567777777776677888888877 2237888888888999999999
Q ss_pred HHHHHHHc
Q 048764 181 YLQKLRST 188 (295)
Q Consensus 181 ll~~m~~~ 188 (295)
++.++.+.
T Consensus 529 LYerlL~r 536 (677)
T KOG1915|consen 529 LYERLLDR 536 (677)
T ss_pred HHHHHHHh
Confidence 99998764
No 148
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.54 E-value=8.3 Score=31.42 Aligned_cols=93 Identities=13% Similarity=0.274 Sum_probs=71.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-------
Q 048764 86 FRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------- 158 (295)
Q Consensus 86 ~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------- 158 (295)
.+....+.+.|++|+...|..+|+.+.+.|.+ ..+..+. .+++-||.......|-.+.... ..+.+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qll-q~~Vi~DSk~lA~~LLs~~~~~--~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLL-QYHVIPDSKPLACQLLSLGNQY--PPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHH-hhcccCCcHHHHHHHHHhHccC--hHHHHHHHHHHH
Confidence 45555666789999999999999999999985 4556666 7888999988887775554432 22333
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...|..+++.+...|++-+|..+.+..
T Consensus 87 RL~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 87 RLGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HhhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 225889999999999999999998875
No 149
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.49 E-value=9.1 Score=36.16 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=48.9
Q ss_pred CCCHHhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 55 RLSLHHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE----ALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 55 ~pd~~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~----~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+.+...++.+-.+ +..++ +++|...|+.-.+. .||. .+|..+-.+|++.|+.++|++.|++..
T Consensus 72 P~~a~a~~NLG~AL~~lGr---------yeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGR---------VKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345666666664 44444 99999999997764 4663 469999999999999999999999887
No 150
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.36 E-value=9.8 Score=35.98 Aligned_cols=112 Identities=14% Similarity=0.242 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH-hhhhcCCCCCcccHH-HHHHHHHhcCCHHHhhc
Q 048764 82 LRHGFRVFDQMLSNN-VIPNEALVTSVARLAASKKDSDYAFELIKR-MNNEFNVVPRLRTYD-PALFCFCENLEAQKAYE 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~-M~~~~gi~P~~~ty~-~ll~~~~~~g~~~~A~~ 158 (295)
++.|+.+|-+..+.| +.|++..|+++|.-++. |++..|..+|+- |+ .. ||.-.|- -.+.-+..-++-+.|..
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~-~f---~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL-KF---PDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH-hC---CCchHHHHHHHHHHHHhCcHHHHHH
Confidence 555555555555555 34555555555554443 344555555543 22 21 3332221 23333333343333332
Q ss_pred --------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 159 --------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 159 --------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
.+.|..+|+.=...|++.-++.+=++|.+. .|-+.+..+.
T Consensus 488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF 541 (660)
T COG5107 488 LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVF 541 (660)
T ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHH
Confidence 234888888888889999999888888773 4555554443
No 151
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=9.4 Score=36.88 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHh--CCCC----CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHH
Q 048764 81 ALRHGFRVFDQMLS--NNVI----PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 81 ~~~~a~~lf~~M~~--~g~~----pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~ 154 (295)
.+.+|...|+.-+. ..+. .-+.+++.|=++|-+.+.+++|+..|+.-. ... .-|..||+++--.|...|+++
T Consensus 429 ~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL-~l~-~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 429 EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL-LLS-PKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH-HcC-CCchhHHHHHHHHHHHhcChH
Confidence 48889888887652 1111 234567888888999999999999999876 332 456667777666666666666
Q ss_pred Hhhc
Q 048764 155 KAYE 158 (295)
Q Consensus 155 ~A~~ 158 (295)
.|..
T Consensus 507 ~Aid 510 (611)
T KOG1173|consen 507 KAID 510 (611)
T ss_pred HHHH
Confidence 6643
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=90.20 E-value=1.9 Score=28.49 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
-..+.+.|++++|...|++..+.. +-+...+..+-..+...+ .+++|...|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g--------~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQG--------RYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Confidence 346788999999999999999876 224444444444554444 29999999999876
No 153
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.58 E-value=14 Score=32.82 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHh-cCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcC
Q 048764 38 DLATAISLYESALS-LNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS-NNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 38 ~~~~A~~lf~~m~~-~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~ 114 (295)
.+.+|+.+|+..-- +.+--|......||+ +-..... .+..-.++.+-+.. .+-.++..+...+|..++..
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~-------~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~ 215 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT-------KLNALYEVVDFLVSTFSKSLTRNVIISILEILAES 215 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc-------chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhc
Confidence 35566666663221 345566677777777 3332221 13333333333332 44557777777777777777
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHcc
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQK-----LRSTV 189 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~-----m~~~~ 189 (295)
+++..-+++.+.-....+-.-|.+.|..+|+. ....|+..-+..++.+ +.+.+
T Consensus 216 ~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~l----------------------i~~sgD~~~~~kiI~~GhLLwikR~~ 273 (292)
T PF13929_consen 216 RDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKL----------------------IVESGDQEVMRKIIDDGHLLWIKRNN 273 (292)
T ss_pred ccHHHHHHHHHHhcccCCCCCCCchHHHHHHH----------------------HHHcCCHHHHHHHhhCCCeEEeeecC
Confidence 77777777777665222444566665555554 5555554444444433 56677
Q ss_pred cCCChhHHHHHHHHHhc
Q 048764 190 RCVNEETGKIIEDWFSG 206 (295)
Q Consensus 190 ~~p~~~t~~~l~~~~~~ 206 (295)
+..++.....|.++|..
T Consensus 274 V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 274 VDVTDELRSQLSELFKK 290 (292)
T ss_pred CcCCHHHHHHHHHHHHh
Confidence 78888888888888843
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=89.42 E-value=11 Score=34.04 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------HH-HHHHHHHHHHh
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------EQ-EITALLKVSAG 171 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e~-~y~~ll~~~~~ 171 (295)
....+.+..|.-+...|+...|..+..+.+ .||-+-|..-|.+|+..+++++-.. .| -|..++..|.+
T Consensus 175 f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 175 FVGLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLK 249 (319)
T ss_pred hhcCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 344567777888888999999998888777 7999999999999999999998776 22 29999999999
Q ss_pred cCCHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQK 184 (295)
Q Consensus 172 ~g~~~~a~~ll~~ 184 (295)
.|+..+|..++.+
T Consensus 250 ~~~~~eA~~yI~k 262 (319)
T PF04840_consen 250 YGNKKEASKYIPK 262 (319)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999999888
No 155
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=89.34 E-value=6 Score=30.33 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc---H-HHHHHHHHhcCCHH
Q 048764 81 ALRHGFRVFDQMLSNNVIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT---Y-DPALFCFCENLEAQ 154 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t---y-~~ll~~~~~~g~~~ 154 (295)
..++|..+|++-...|...+ ...+-.+-+.+-.-|++++|..+|++.. .. .|+... . ..+--++...|+.+
T Consensus 16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~-~~--~p~~~~~~~l~~f~Al~L~~~gr~~ 92 (120)
T PF12688_consen 16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL-EE--FPDDELNAALRVFLALALYNLGRPK 92 (120)
T ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH--CCCccccHHHHHHHHHHHHHCCCHH
Confidence 38899999999999887654 3345556677788999999999999887 33 244211 1 11112445566666
Q ss_pred Hhhc
Q 048764 155 KAYE 158 (295)
Q Consensus 155 ~A~~ 158 (295)
+|..
T Consensus 93 eAl~ 96 (120)
T PF12688_consen 93 EALE 96 (120)
T ss_pred HHHH
Confidence 6644
No 156
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.26 E-value=3.9 Score=40.87 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 141 DPALFCFCENLEAQKAYE----EQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
-.+-.-|-..|++..|.. ..+|.+-++.|...+.+++|+++-+
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHh
Confidence 334445555666666655 3457777777877777777776654
No 157
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=88.83 E-value=6.2 Score=37.23 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc----cHHHHHHHHHhcCCHHHhhc
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR----TYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~----ty~~ll~~~~~~g~~~~A~~ 158 (295)
+.+...|+.+-.+|.+.|++++|+..|+.-. . +.|+.. +|..+-.+|...|+.++|..
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rAL-e--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETAL-E--LNPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-h--hCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4567889999999999999999999999966 3 468854 58899999999999999988
No 158
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.51 E-value=21 Score=36.90 Aligned_cols=148 Identities=17% Similarity=0.082 Sum_probs=91.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhC----CC-CCC
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSN----NV-IPN 100 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~----g~-~pd 100 (295)
..+...|++++|...+++..+.--..+. ..++.+-.. ...++ +++|...+.+.... |- .+-
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~---------~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE---------LARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhhhcchHHH
Confidence 3456789999999999987753111121 122222222 33444 88898888887641 11 111
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCC--C-CcccHHHHHHHHHhcCCHHHhhc---------H----H-
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNN---EFNVV--P-RLRTYDPALFCFCENLEAQKAYE---------E----Q- 160 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~--P-~~~ty~~ll~~~~~~g~~~~A~~---------e----~- 160 (295)
..+++.+-..+...|+++.|..++++... ..+.. | ....+..+-..+...|+.+.|.. + .
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 24555666778889999999999887652 22321 1 12234444556677799998876 0 0
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 ---EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ---~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.+..+-..+...|+.++|...+.+...
T Consensus 611 ~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 611 QLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 133344456678999999988887744
No 159
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.26 E-value=5.5 Score=33.45 Aligned_cols=74 Identities=15% Similarity=0.151 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh--hcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 83 RHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN--EFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 83 ~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~--~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
+.|++.|-.+...+.--+....-+|..-|. ..|.+++..++....+ ..+=.+|...+.+|.+.|-+.|+.+.|+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777777766555555555555554 4567777777776653 2222566667777777777777777765
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.24 E-value=16 Score=32.27 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS----LNFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~----~g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|...-..|-..+++++|...|....+ .+-+. -...|......+...+ +++|...|++... .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~---------~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGD---------PDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHHHHHhc
Confidence 788888888899999999999987642 22211 1233444444666665 5566666555433 3
Q ss_pred CCCCC--HHHHHHHHHHHHcC-CCHHHHHHHHHHhhh---hcCCCCC--cccHHHHHHHHHhcCCHHHhhc--H------
Q 048764 96 NVIPN--EALVTSVARLAASK-KDSDYAFELIKRMNN---EFNVVPR--LRTYDPALFCFCENLEAQKAYE--E------ 159 (295)
Q Consensus 96 g~~pd--~~ty~~li~~~~~~-g~~~~A~~l~~~M~~---~~gi~P~--~~ty~~ll~~~~~~g~~~~A~~--e------ 159 (295)
|- |+ ..++.-+-..|-.. |+++.|+++|++-.. ..| .|. ..++.-+...+.+.|+.++|.. +
T Consensus 108 G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 108 GR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp T--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred Cc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 32 33 33667777777777 899999888887652 223 222 2345666777888888888888 0
Q ss_pred -----------HHH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 160 -----------QEI-TALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 160 -----------~~y-~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
..| .++| ++...|+...|...+++....
T Consensus 186 l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 186 LENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp CCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTT
T ss_pred hcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhh
Confidence 012 3333 455578888999999887653
No 161
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.15 E-value=17 Score=35.35 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLN 53 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g 53 (295)
.=+-|+.+.+.+++++|+..-++....+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~ 42 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV 42 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC
Confidence 3344677777888888888888877665
No 162
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=87.98 E-value=15 Score=30.75 Aligned_cols=120 Identities=13% Similarity=0.137 Sum_probs=71.2
Q ss_pred HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 58 LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV--IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
...|..-...+..++ +.+|.+.|+.+...-. +--....-.++.++-+.|+++.|...|+.....+.-.|
T Consensus 6 ~~lY~~a~~~~~~g~---------y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 6 EALYQKALEALQQGD---------YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHHHHHCT----------HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 345666666777777 9999999999987422 12234455678889999999999999999873443334
Q ss_pred CcccHHHHHHHHHhcCCHHHh----------hc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 136 RLRTYDPALFCFCENLEAQKA----------YE-EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 136 ~~~ty~~ll~~~~~~g~~~~A----------~~-e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
. .-|.-.+.+.+.-...... .+ ...|..+|+-|-......+|...+..+++
T Consensus 77 ~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~ 138 (203)
T PF13525_consen 77 K-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRN 138 (203)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH
T ss_pred c-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHH
Confidence 3 3455555555543333222 11 22356666666666666666555555443
No 163
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=87.70 E-value=39 Score=36.55 Aligned_cols=124 Identities=13% Similarity=0.045 Sum_probs=70.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 20 ~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
+.|-..|..|..-|.+....++|-++|++|.+.- .-....|...+. +..+.. .+.|..++..-++. -
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne---------~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNE---------AEAARELLKRALKS--L 1594 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccH---------HHHHHHHHHHHHhh--c
Confidence 3444477777777777777777777777776442 234456666666 444444 55566666554442 1
Q ss_pred CC---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 99 PN---EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 99 pd---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
|- .-...-.+..-.+.||.+.+..+|+... ..- .-..-.|+..|+.=.+.|+.+.+.
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll-~ay-PKRtDlW~VYid~eik~~~~~~vR 1654 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLL-SAY-PKRTDLWSVYIDMEIKHGDIKYVR 1654 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHH-hhC-ccchhHHHHHHHHHHccCCHHHHH
Confidence 21 2223333444455677777777777665 221 123345777777777777666543
No 164
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.55 E-value=3 Score=37.33 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHc
Q 048764 38 DLATAISLYESALSLN---FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EALVTSVARLAAS 113 (295)
Q Consensus 38 ~~~~A~~lf~~m~~~g---~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~ 113 (295)
.+..|..+|+.|++.. ..++-+++.+||..-.... ..-.+.+...|+.+...|...+ ..-+.+-|-+++.
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~~~------e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~ 191 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSEDV------EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSE 191 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhcccccH------HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcc
Confidence 3577999999999765 3577788888887522211 1126789999999999898654 3234444434433
Q ss_pred -CCC--HHHHHHHHHHhhhhcCCCCCcccHHHH
Q 048764 114 -KKD--SDYAFELIKRMNNEFNVVPRLRTYDPA 143 (295)
Q Consensus 114 -~g~--~~~A~~l~~~M~~~~gi~P~~~ty~~l 143 (295)
..+ ...+.++++.++ +.|+++....|..+
T Consensus 192 ~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~l 223 (297)
T PF13170_consen 192 GDDQEKVARVIELYNALK-KNGVKIKYMHYPTL 223 (297)
T ss_pred ccchHHHHHHHHHHHHHH-HcCCccccccccHH
Confidence 222 447899999999 99999998886643
No 165
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=86.94 E-value=2.5 Score=40.62 Aligned_cols=119 Identities=10% Similarity=0.004 Sum_probs=84.6
Q ss_pred CCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 18 TNPNPET--NFLISLQSCTKSKDLATAISLYESALSL--NFRL----SLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 18 ~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~--g~~p----d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
....|+. .++-+=-.....+.+.+|...|...... .+-+ -..+++.|=+.|.+.+ .+++|+.-|
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~--------~~~eAI~~~ 478 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN--------KYEEAIDYY 478 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh--------hHHHHHHHH
Confidence 3444443 5555555555677889999999876511 1111 2234555555777766 389999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
+.-+.. .+-|..||+++--.|...|+++.|.+.|++-. .+.||-.+-..+|..+.
T Consensus 479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccHHHHHHHHHHH
Confidence 987663 24678899999999999999999999999855 78999988888877443
No 166
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=86.90 E-value=30 Score=34.30 Aligned_cols=111 Identities=16% Similarity=0.081 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh-----hcCCCCCcccHHHHHHHHHhcC-----
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN-----EFNVVPRLRTYDPALFCFCENL----- 151 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~-----~~gi~P~~~ty~~ll~~~~~~g----- 151 (295)
.+-+..+|..-++ +.| ..-+--|.-+++.+++++|-+.+..... ....+-+...|.-+-+-.++.-
T Consensus 154 Pets~rvyrRYLk--~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 154 PETSIRVYRRYLK--VAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 3445555555544 122 2356667777788888888777776542 1111334444444444333322
Q ss_pred -CHHHhhc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhH
Q 048764 152 -EAQKAYE----------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEET 196 (295)
Q Consensus 152 -~~~~A~~----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t 196 (295)
+++.-++ ..-|.+|-+.|.+.|.+++|.+++.+-......+..-|
T Consensus 230 lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt 285 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFT 285 (835)
T ss_pred cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHH
Confidence 3333333 22389999999999999999999999777665555443
No 167
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=24 Score=36.88 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=25.6
Q ss_pred cccHHHHHHHHHhcCCHHHhhc--------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 137 LRTYDPALFCFCENLEAQKAYE--------EQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 137 ~~ty~~ll~~~~~~g~~~~A~~--------e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
..||--+=.+|...+.+..|.- ..+..-|++.|-..|.+++...+++
T Consensus 1249 ~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred hhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 3444444444444444444433 3446667777777777666655554
No 168
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=86.23 E-value=14 Score=28.62 Aligned_cols=120 Identities=17% Similarity=0.092 Sum_probs=74.8
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccH
Q 048764 61 FNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTY 140 (295)
Q Consensus 61 y~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty 140 (295)
...+|..+...+. .......++.+...+. .+...+|.+|..|++.. ....++.+.. .++.+..
T Consensus 10 ~~~vv~~~~~~~~--------~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~ 72 (140)
T smart00299 10 VSEVVELFEKRNL--------LEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDI 72 (140)
T ss_pred HHHHHHHHHhCCc--------HHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCH
Confidence 3455665554442 7888999999888773 78889999999999874 4455555552 2344555
Q ss_pred HHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcccCCChhHHHHHHHH
Q 048764 141 DPALFCFCENLEAQKAYE----EQEITALLKVSAGT-GRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 203 (295)
Q Consensus 141 ~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~-g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~ 203 (295)
..++..|.+.+..+.+.- ...|...++.+... ++.+.|.+++.+ .-++..|..+...
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~ 134 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKA 134 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHH
Confidence 567777777777665554 22244444444444 667777766665 2245566555443
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.11 E-value=7.9 Score=34.45 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=66.0
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHHhcCCHHH
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSAGTGRVEK 177 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~~~g~~~~ 177 (295)
+.+.+++.+|+..+.+-. . +.|+- +-|.-=-.+|++.|+.+.|.+ .+ .|..|=.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI-~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI-E--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH-h--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 356889999999999987 4 45654 445566789999999999988 22 38888888999999999
Q ss_pred HHHHHHHHHHcccCCChhHHHH
Q 048764 178 VYQYLQKLRSTVRCVNEETGKI 199 (295)
Q Consensus 178 a~~ll~~m~~~~~~p~~~t~~~ 199 (295)
|.+.|++-.+ +.|+-.+|..
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~ 187 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKS 187 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHH
Confidence 9999888655 6787777644
No 170
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=86.08 E-value=2.5 Score=29.00 Aligned_cols=62 Identities=11% Similarity=0.173 Sum_probs=43.9
Q ss_pred HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 59 HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NNV-IPN-EALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+|+.+-..+...+ ++++|...|++..+ .|- .|+ ..+++.+-..|...|++++|++++++-.
T Consensus 6 ~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELG--------RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35555555444444 29999999988765 221 233 5678888999999999999999998754
No 171
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=85.73 E-value=20 Score=31.60 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCCC-HHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHh----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESAL----SLNFRLS-LHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLS---- 94 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~----~~g~~pd-~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~---- 94 (295)
.|......|-+. ++++|+..|++.. +.|-... ..++..+-.+|... + ++++|.+.|++-.+
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~--------d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG--------DYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHH
Confidence 455444444333 6667766666554 2332221 12333333355444 2 38888888877544
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC-----CCcc-cHHHHHHHHHhcCCHHHhhc
Q 048764 95 NNVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV-----PRLR-TYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 95 ~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~-----P~~~-ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|-+- -..++.-+...+.+.|++++|.++|++.. ..-+. ++.. .|-..+-++...||...|..
T Consensus 148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~-~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA-KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH-HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33111 13567788889999999999999999987 44332 2222 23334446667788877765
No 172
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=20 Score=32.96 Aligned_cols=152 Identities=14% Similarity=0.059 Sum_probs=68.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 22 PETNFLISLQSCTKSKDLATAISLYESALSL---NFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~---g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
|+.-.|-+|- |.+.+++.+|..+..++.-- -...-.+++..+=. .-++.. +.-|...|+-.-+++.
T Consensus 285 PEARlNL~iY-yL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH---------lKiAqqffqlVG~Sa~ 354 (557)
T KOG3785|consen 285 PEARLNLIIY-YLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH---------LKIAQQFFQLVGESAL 354 (557)
T ss_pred hHhhhhheee-ecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH---------HHHHHHHHHHhccccc
Confidence 4444443333 55666666666665554210 01222234444433 222222 5555555544433333
Q ss_pred CCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------HH------HHH-
Q 048764 98 IPNEAL-VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------EQ------EIT- 163 (295)
Q Consensus 98 ~pd~~t-y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e~------~y~- 163 (295)
.-|.+. =-+|.+.+.-.-++|+.+-+++..+ .+-..-|...|| +.++++-.|...+|.+ .+ .|-
T Consensus 355 ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s 432 (557)
T KOG3785|consen 355 ECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKS 432 (557)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHH
Confidence 211111 1123333333344566666666665 554444444443 3455566666555555 11 133
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m 185 (295)
.|-++|.+.+...-|.+++-++
T Consensus 433 ~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 433 MLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHhcCCchHHHHHHHhc
Confidence 3334455666666665555444
No 173
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=85.22 E-value=18 Score=36.88 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 80 SALRHGFRVFDQMLSNNVIPNEALVTSVARLAA--SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~--~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
+++..|......+.+.. || ..|..++.++. +.|..++|..+++... ..+.. |..|..++-.+|.+.|..++|.
T Consensus 23 ~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~-~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALY-GLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhc-cCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 35888988888876643 55 44555666554 6899999999999887 55544 8899999999999999999998
Q ss_pred c-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh--hHHHHHHHHHhc
Q 048764 158 E-----------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE--ETGKIIEDWFSG 206 (295)
Q Consensus 158 ~-----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~--~t~~~l~~~~~~ 206 (295)
. +.....+..+|.|.+++.+....--+|-.. .|.. ..|.++.-.+.+
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs 157 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQS 157 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHh
Confidence 8 334678888899999888766655555442 3433 345555444433
No 174
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=85.13 E-value=2.1 Score=28.58 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
..+|..+-..+...|++++|+..|.+.. ..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai-~~ 32 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAI-EL 32 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc
Confidence 4566666677777777777777777776 44
No 175
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.92 E-value=18 Score=34.54 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=85.0
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC-
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN- 95 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~- 95 (295)
...|+. .|--+=-+..|.+.+++++..|++.++. +|-.+..||..-....... +++.|.+.|+.-..-
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqq--------qFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQ--------QFDKAVKQYDKAIELE 492 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHH--------hHHHHHHHHHHHHhhc
Confidence 455666 4444444445778999999999999866 5666677777777444333 399999999976541
Q ss_pred ----CCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 96 ----NVIPNEALV--TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 96 ----g~~pd~~ty--~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++..+..++ -++|-.- -.+++..|..++..-. .. .|. ...|.+|-+.-...|++++|++
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~-e~--Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAI-EL--DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHH-cc--CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 121122221 1122111 3589999999999887 33 343 4679999999999999999988
No 176
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.83 E-value=19 Score=31.56 Aligned_cols=93 Identities=11% Similarity=-0.010 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc----ccHHHHHHHHHhcCCHHHhhc--------------HH-H
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL----RTYDPALFCFCENLEAQKAYE--------------EQ-E 161 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~ll~~~~~~g~~~~A~~--------------e~-~ 161 (295)
...|+.-+..+.+.|++++|...|+... .. -|+. ..+--+-..|...|+.++|.. .+ .
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl-~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFV-KK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 4557777766677899999999999988 43 3554 255667778889999999988 01 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 198 (295)
+-.+...+...|+.++|..+++++.+. .|+.....
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~~a~ 254 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHH
Confidence 333444566889999999999998774 45554443
No 177
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=84.76 E-value=13 Score=37.13 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC--------------------CCCcchHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT--------------------DPSLKDSALRH 84 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~--------------------~~~~~~~~~~~ 84 (295)
.|.-+|-.|+..|+..+|-.+..+-.+ -+||...|..|......... ......+++++
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~ 503 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE 503 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence 577788888888888888777766655 47777777776654333221 00011223444
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc---HH
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE---EQ 160 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~---e~ 160 (295)
+.+.|+.-.+-+ +.-..||=.+=-+.-+.+++..|.+.|..-. -+.||- ..||.+-.+|.+.|+-.+|+. |.
T Consensus 504 ~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 504 ADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 444443322210 0122334333334445677888888887765 346765 469999999999999998888 22
Q ss_pred H---------HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 E---------ITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~---------y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
- |....-...+.|.+++|....++|..
T Consensus 580 lKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 580 LKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 1 33344456799999999999888754
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=84.70 E-value=18 Score=29.12 Aligned_cols=91 Identities=11% Similarity=0.082 Sum_probs=63.0
Q ss_pred HHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHH
Q 048764 65 LYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL 144 (295)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll 144 (295)
-.++..++ +++|.++|+-...... -+..-|-.|--.+-..|++++|++.|.... ... .-|.+.|--+-
T Consensus 43 ~~ly~~G~---------l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~-~L~-~ddp~~~~~ag 110 (157)
T PRK15363 43 MQLMEVKE---------FAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAA-QIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHCCC---------HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC-CCCchHHHHHH
Confidence 33666777 8999999998876432 234445556666667899999999999877 555 34566777778
Q ss_pred HHHHhcCCHHHhhcHHHHHHHHHHH
Q 048764 145 FCFCENLEAQKAYEEQEITALLKVS 169 (295)
Q Consensus 145 ~~~~~~g~~~~A~~e~~y~~ll~~~ 169 (295)
.++...|+.+.|.. .|...|.-|
T Consensus 111 ~c~L~lG~~~~A~~--aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIK--ALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHH--HHHHHHHHh
Confidence 88889999888865 244444444
No 179
>PRK04841 transcriptional regulator MalT; Provisional
Probab=84.59 E-value=53 Score=33.94 Aligned_cols=154 Identities=13% Similarity=0.091 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCC--C-CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS----LNFR--L-SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~----~g~~--p-d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~- 95 (295)
++..+-..+...|++++|...+++... .+.. + ....+..+-. ++..++ +++|...+.+....
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~---------~~~A~~~~~~al~~~ 603 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR---------LDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHhHHhh
Confidence 445556667888999999999887653 2221 1 2233333333 445555 88888888876541
Q ss_pred -CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC-CCCCcccHH-----HHHHHHHhcCCHHHhhc--------
Q 048764 96 -NVIP--NEALVTSVARLAASKKDSDYAFELIKRMNNEFN-VVPRLRTYD-----PALFCFCENLEAQKAYE-------- 158 (295)
Q Consensus 96 -g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g-i~P~~~ty~-----~ll~~~~~~g~~~~A~~-------- 158 (295)
...+ ...++..+...+...|+++.|.+.+.... ... -......+. ..+..+...|+.+.|..
T Consensus 604 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 604 SNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE-NLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred hccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 1112 23445556667788999999999988875 321 011111111 11233344666666555
Q ss_pred ---HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 ---EQ-----EITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 ---e~-----~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.. .+..+-.++...|+.++|..++.+....
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 00 0234455566778888887777776543
No 180
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=84.42 E-value=47 Score=34.52 Aligned_cols=130 Identities=9% Similarity=0.007 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA 108 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li 108 (295)
+-.+|-+.|+.++|..+|+++.+.. +-|+...|-+-+.++..+ +++|..++..-...
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~d---------L~KA~~m~~KAV~~------------- 178 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEED---------KEKAITYLKKAIYR------------- 178 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhh---------HHHHHHHHHHHHHH-------------
Confidence 3334444455555555555555444 334445555544433332 55555555544331
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCCcccH-HHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPRLRTY-DPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty-~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
|....++..+++++.++. .. .|+.+.+ --++.....+-....+ ...+-.|...|-...+++++..+|+.+.+
T Consensus 179 --~i~~kq~~~~~e~W~k~~-~~--~~~d~d~f~~i~~ki~~~~~~~~~--~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 179 --FIKKKQYVGIEEIWSKLV-HY--NSDDFDFFLRIERKVLGHREFTRL--VGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred --HHhhhcchHHHHHHHHHH-hc--CcccchHHHHHHHHHHhhhccchh--HHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 334445555555555555 22 2333222 2222211111000000 22255666778888899999999999876
Q ss_pred c
Q 048764 188 T 188 (295)
Q Consensus 188 ~ 188 (295)
.
T Consensus 252 ~ 252 (906)
T PRK14720 252 H 252 (906)
T ss_pred c
Confidence 4
No 181
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.22 E-value=1.9 Score=25.09 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+|+.|-+.|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999844
No 182
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.88 E-value=6.3 Score=34.90 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=50.0
Q ss_pred cHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cccCCChhHHHHHH
Q 048764 139 TYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRS-----TVRCVNEETGKIIE 201 (295)
Q Consensus 139 ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~-----~~~~p~~~t~~~l~ 201 (295)
++..++..+...|+++.+.. |+.|..|+.+|.+.|+...|...+++|.. .|+.|.+.++....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 44555556666666655555 66689999999999999999888888755 68999998888776
Q ss_pred HHHh
Q 048764 202 DWFS 205 (295)
Q Consensus 202 ~~~~ 205 (295)
..+.
T Consensus 235 ~~~~ 238 (280)
T COG3629 235 EILR 238 (280)
T ss_pred HHhc
Confidence 6653
No 183
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=83.61 E-value=7.9 Score=39.29 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=28.6
Q ss_pred CCCCCChhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048764 6 SANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSL 52 (295)
Q Consensus 6 ~~~~~~~~~~~~~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~ 52 (295)
-.+.+..|.-|+..+.|+.+=..+-......|.+++|+.+|.+-++.
T Consensus 783 m~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~ 829 (1416)
T KOG3617|consen 783 MKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY 829 (1416)
T ss_pred hhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34445555556666666543333333345678889999998887754
No 184
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.58 E-value=17 Score=35.43 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh--
Q 048764 25 NFLISLQSCTKSKDLATAISLYE--------SALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS-- 94 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~--------~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~-- 94 (295)
..=.+++.....|+++.|++++. ...+.+..|-.+.+ ++.++.+.++ -+.|-.++++-..
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~--------~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKD--------NDSASAVLDSAIKWW 447 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccC--------CccHHHHHHHHHHHH
Confidence 45556788888999999999999 66666667755544 4444444432 2234444443322
Q ss_pred CCCCCCHHHHHHHHHHHH----cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc
Q 048764 95 NNVIPNEALVTSVARLAA----SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCEN 150 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~----~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~ 150 (295)
..-.+.....++++.-++ ++|+-++|..+++++. ..+ .+|..+...++.+|++.
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~-k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV-KFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH-HhC-CchHHHHHHHHHHHHhc
Confidence 111233355555555444 5899999999999999 655 68888888888888764
No 185
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.47 E-value=8 Score=28.77 Aligned_cols=62 Identities=11% Similarity=0.227 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 83 RHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 83 ~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
=+.++-++.+-...+.|+..+..+.+++|-+-.|+..|.++|+..+.+.| +....|..+|+-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35666677777788899999999999999999999999999999884444 333377777764
No 186
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=83.28 E-value=8.2 Score=34.60 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=26.5
Q ss_pred CCCcHhHHHHHHHH-HHhcCC-HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC
Q 048764 19 NPNPETNFLISLQS-CTKSKD-LATAISLYESALSLNFRLSLHHFNALLYLCSNSAT 73 (295)
Q Consensus 19 ~~~p~~t~~~li~~-~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~ 73 (295)
+.+|...+++|+.- .++.|= +.-|..+|....... ..+.|++...++.+
T Consensus 161 Gt~~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek------~i~~lis~Lrkg~m 211 (412)
T KOG2297|consen 161 GTLPATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEK------DINDLISSLRKGKM 211 (412)
T ss_pred CCCCHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhc------cHHHHHHHHHhcCh
Confidence 56677777776543 333332 233566776655321 34556665566554
No 187
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.18 E-value=24 Score=28.92 Aligned_cols=109 Identities=16% Similarity=0.062 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh---CCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL--HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS---NNVI 98 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~---~g~~ 98 (295)
.+..+-.-|++.|+.+.|++.|.++++....|.. ..+-.+|. +...++ +..+......... .|-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d---------~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD---------WSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHHhccch
Confidence 8888999999999999999999999887655432 33444555 333444 5455444443322 3322
Q ss_pred CCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC--CCCCcccHHHHH
Q 048764 99 PNE----ALVTSVARLAASKKDSDYAFELIKRMNNEFN--VVPRLRTYDPAL 144 (295)
Q Consensus 99 pd~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g--i~P~~~ty~~ll 144 (295)
++. .+|..|... ..+++..|-++|-+.....+ --+.+.+|+-++
T Consensus 109 ~~~~nrlk~~~gL~~l--~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a 158 (177)
T PF10602_consen 109 WERRNRLKVYEGLANL--AQRDFKEAAELFLDSLSTFTSLQYTELISYNDFA 158 (177)
T ss_pred HHHHHHHHHHHHHHHH--HhchHHHHHHHHHccCcCCCCCchhhhcCHHHHH
Confidence 222 334444333 26799999888887762332 114445555433
No 188
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=82.48 E-value=56 Score=32.65 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-
Q 048764 80 SALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE- 158 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~- 158 (295)
|++..|+.++.+.-+.+- -++..|-+-++....+..++.|..+|.+-. +..|..+.|---++.-.-.+..++|.+
T Consensus 598 gdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred CCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 458888888888776543 378889999999999999999999999876 356788887777777777788888887
Q ss_pred -HH------H----HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHH
Q 048764 159 -EQ------E----ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIE 201 (295)
Q Consensus 159 -e~------~----y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~ 201 (295)
|. + |-.+=..+-..++++.|.+.+.. -...+|+ ...|.++.
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~--G~k~cP~~ipLWllLa 726 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ--GTKKCPNSIPLWLLLA 726 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh--ccccCCCCchHHHHHH
Confidence 11 1 33333344455556655544433 1234554 35565543
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=82.41 E-value=6.9 Score=25.92 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=46.1
Q ss_pred HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHhh
Q 048764 58 LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK-DSDYAFELIKRMN 128 (295)
Q Consensus 58 ~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g-~~~~A~~l~~~M~ 128 (295)
+.+|..+=. ++..++ +++|...|++..+.. +-+...|..+-.+|-..| ++++|+..|+.-.
T Consensus 3 a~~~~~~g~~~~~~~~---------~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGD---------YEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTH---------HHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 345555555 334444 999999999988853 236778888889999999 7999999998765
No 190
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=81.65 E-value=15 Score=32.55 Aligned_cols=65 Identities=6% Similarity=0.007 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCCCCCcccHHHHHHH
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN----EFNVVPRLRTYDPALFC 146 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi~P~~~ty~~ll~~ 146 (295)
.++.+...++++.... +-|+..|..||.+|.+.|+...|+..|+.+.. ..|+.|-..+.......
T Consensus 168 ~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 168 RADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 3677777777776643 46889999999999999999999999888763 47888888876665555
No 191
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=81.59 E-value=3.8 Score=23.79 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESAL 50 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~ 50 (295)
+|+.|=..|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788899999999999999999854
No 192
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.44 E-value=55 Score=31.86 Aligned_cols=105 Identities=19% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHH-hcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCC
Q 048764 39 LATAISLYESAL-SLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEALVTSVARLAASKKD 116 (295)
Q Consensus 39 ~~~A~~lf~~m~-~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~ty~~li~~~~~~g~ 116 (295)
+....++|-++. ..+..+|.-.+..|=-+|--.+ .+++|..-|+..+. +.| |..+||-|=..++...+
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~--------efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~ 479 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG--------EFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNR 479 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch--------HHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcc
Confidence 445556666665 5553344444444444333333 38999999999877 345 67889999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHh
Q 048764 117 SDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 117 ~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A 156 (295)
.++|..-|.+-. .++|+- +...-|--+|...|...+|
T Consensus 480 s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 480 SEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred cHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHH
Confidence 999999999876 567874 3333334456677777666
No 193
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.19 E-value=48 Score=31.91 Aligned_cols=106 Identities=10% Similarity=-0.029 Sum_probs=72.8
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 83 RHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 83 ~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
++....+... ...|+..+......+++ ...|++..|+.++++.. ..+ ...+|+..+...+.-. + ...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i-~~~--~~~it~~~V~~~lg~~-~------~~~ 250 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAI-VFT--DSKLTGVKIRKMIGYH-G------IEF 250 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHH-HhC--CCCcCHHHHHHHhCCC-C------HHH
Confidence 3444545544 34788878777766665 45699999999999876 443 3457888776665211 1 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
+..++++....+....|+.++.+|.+.|..|..-...++
T Consensus 251 ~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~ 289 (484)
T PRK14956 251 LTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSI 289 (484)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 567777766666667899999999999988876665554
No 194
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.00 E-value=7.8 Score=28.54 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
.=++++-++.+....+.|+....++-+++|-+-.|+..|.++|+..+.+.| .+...|..+++-
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lqe 85 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQE 85 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHHH
Confidence 345667777777788899999999999999999999999999998772333 344467776653
No 195
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.73 E-value=42 Score=30.22 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=85.9
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 048764 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP 99 (295)
Q Consensus 20 ~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p 99 (295)
..|+.-+++.|....+..++.+|++++..-.+.. +.+....+.|-+.|.... .+..|-.-|+++-.. .|
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q--------~f~~AA~CYeQL~ql--~P 75 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQ--------EFALAAECYEQLGQL--HP 75 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhh--Ch
Confidence 3455677888888888889999998887665542 225555555555333322 155555555555332 23
Q ss_pred CHHHHHHH-HHHHHcCCCHHHHHHHHHHhhhhc------------------C----------CCCCcccHHHHHHH---H
Q 048764 100 NEALVTSV-ARLAASKKDSDYAFELIKRMNNEF------------------N----------VVPRLRTYDPALFC---F 147 (295)
Q Consensus 100 d~~ty~~l-i~~~~~~g~~~~A~~l~~~M~~~~------------------g----------i~P~~~ty~~ll~~---~ 147 (295)
-..-|.-- ...+-+++.+..|+++...|. +. + -.|..-+-..+++- .
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~-D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll 154 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLL-DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee
Confidence 33333211 122233444444444444443 21 0 00111111122221 1
Q ss_pred HhcCCHHHhhc---H----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 148 CENLEAQKAYE---E----------QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 148 ~~~g~~~~A~~---e----------~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
.+.|+.+.|.+ + ..||.-|.-| +.|+.+.|+++..+++++|+.-.+
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCC
Confidence 35677777666 1 1166555444 568889999999999888876544
No 196
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.63 E-value=27 Score=33.21 Aligned_cols=133 Identities=12% Similarity=0.147 Sum_probs=78.3
Q ss_pred HhcCCHHHHHHHHH-HHHhcCCCCCHHhHHHHHHHHHcCCCC---------------CCcchHHHHHHHHHHHHHHhCCC
Q 048764 34 TKSKDLATAISLYE-SALSLNFRLSLHHFNALLYLCSNSATD---------------PSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 34 ~~~g~~~~A~~lf~-~m~~~g~~pd~~ty~~ll~~~~~~~~~---------------~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
.-.+++++++++.. .-.-..++ ....+.+++...+.+.. -+.++|.++.|.++-++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~------ 343 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKE------ 343 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCC------
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHh------
Confidence 34567777666664 11112222 34466777744444421 01233345555544333
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-------HHHHHHHHHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------EQEITALLKVSA 170 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-------e~~y~~ll~~~~ 170 (295)
.++...|..|-+..-..|+++.|.+.|.... -|..|+--|.-.|+.++-.+ ...+|..+.++.
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~ 413 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAAL 413 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3578899999999999999999999999887 57778888888888765444 223777777777
Q ss_pred hcCCHHHHHHHHHH
Q 048764 171 GTGRVEKVYQYLQK 184 (295)
Q Consensus 171 ~~g~~~~a~~ll~~ 184 (295)
-.|+.++..++|.+
T Consensus 414 ~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 414 LLGDVEECVDLLIE 427 (443)
T ss_dssp HHT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 77888887777765
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=79.49 E-value=16 Score=24.40 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=13.4
Q ss_pred HHHHcCCCHHHHHHHHHHhh
Q 048764 109 RLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~ 128 (295)
..|.+.++++.|.++++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l 22 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL 22 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 34566677777777777766
No 198
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.42 E-value=24 Score=28.05 Aligned_cols=93 Identities=9% Similarity=0.030 Sum_probs=65.2
Q ss_pred HHHhcCCCCCH--HhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhCC---C--CCCHHHHHHHHHHHHcCCC-HH
Q 048764 48 SALSLNFRLSL--HHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSNN---V--IPNEALVTSVARLAASKKD-SD 118 (295)
Q Consensus 48 ~m~~~g~~pd~--~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~g---~--~pd~~ty~~li~~~~~~g~-~~ 118 (295)
.|++.+..++. ...|+||+- -.... +.....+++.+.--. + ..|-.+|.+++++.++..- --
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~n---------f~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~ 97 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQN---------FSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKL 97 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccc---------hHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHH
Confidence 35556666655 457888884 33344 666777776663311 1 2456689999999988776 34
Q ss_pred HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc
Q 048764 119 YAFELIKRMNNEFNVVPRLRTYDPALFCFCEN 150 (295)
Q Consensus 119 ~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~ 150 (295)
-+..+|+-|+ +.+.+++..-|..||.++.+-
T Consensus 98 ~~~~Lf~~Lk-~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 98 TSLTLFNFLK-KNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcC
Confidence 5689999999 888888888999988886654
No 199
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=79.14 E-value=32 Score=27.73 Aligned_cols=76 Identities=12% Similarity=-0.071 Sum_probs=55.9
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH-HHHHHHHhcCCHHHhhc-------------HHHHHHHHHHHHhcCC
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD-PALFCFCENLEAQKAYE-------------EQEITALLKVSAGTGR 174 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~-~ll~~~~~~g~~~~A~~-------------e~~y~~ll~~~~~~g~ 174 (295)
..+...|++++|..+|+... .. .|....|. .|=-+|-..|++.+|.. ++ |-.+=.++...|+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~-~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~-~~~ag~c~L~lG~ 118 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLT-IY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA-PWAAAECYLACDN 118 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHH-Hh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHcCC
Confidence 34557999999999999987 54 46665555 44445556799999998 22 4444556778999
Q ss_pred HHHHHHHHHHHHHc
Q 048764 175 VEKVYQYLQKLRST 188 (295)
Q Consensus 175 ~~~a~~ll~~m~~~ 188 (295)
.+.|..-|+.-+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999986653
No 200
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=78.60 E-value=29 Score=33.68 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhc-CCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 048764 40 ATAISLYESALSL-NFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDS 117 (295)
Q Consensus 40 ~~A~~lf~~m~~~-g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~ 117 (295)
..+.+...+.... ..+.+...|..+-- ....++ +++|...|++....+ |+...|..+-..+...|++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~---------~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGK---------TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCH
Confidence 3444444443332 23344455655533 334455 999999999998865 7889999999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHH
Q 048764 118 DYAFELIKRMNNEFNVVPRLRTYD 141 (295)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ty~ 141 (295)
++|.+.+.+-. -+.|..-||.
T Consensus 470 ~eA~~~~~~A~---~L~P~~pt~~ 490 (517)
T PRK10153 470 RLAADAYSTAF---NLRPGENTLY 490 (517)
T ss_pred HHHHHHHHHHH---hcCCCCchHH
Confidence 99999998865 3456666654
No 201
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.53 E-value=34 Score=30.96 Aligned_cols=97 Identities=12% Similarity=0.085 Sum_probs=66.8
Q ss_pred hcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 048764 51 SLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN---NVIPNEALVTSVARLAASKKDSDYAFELIKRM 127 (295)
Q Consensus 51 ~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~---g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M 127 (295)
..|.+.++.+...++..-.... .++++...+-.++.+ -..|+...| +.|+.+-+ -++++++.++..=
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~--------~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlllk-y~pq~~i~~l~np 126 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSRE--------EIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLLK-YDPQKAIYTLVNP 126 (418)
T ss_pred hcCCCcceeehhhhhhcccccc--------chhHHHHHHHHHhcCcchhhhccccHH-HHHHHHHc-cChHHHHHHHhCc
Confidence 3455555555555555333222 277777777666542 123443333 34444444 3788999999998
Q ss_pred hhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 128 NNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 128 ~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
. .+|+-||..|++.||+.+.+.+++..|..
T Consensus 127 I-qYGiF~dqf~~c~l~D~flk~~n~~~aa~ 156 (418)
T KOG4570|consen 127 I-QYGIFPDQFTFCLLMDSFLKKENYKDAAS 156 (418)
T ss_pred c-hhccccchhhHHHHHHHHHhcccHHHHHH
Confidence 8 99999999999999999999999998888
No 202
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=78.43 E-value=30 Score=34.71 Aligned_cols=123 Identities=17% Similarity=0.121 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCHHhHHHHHHHHHcCCCC--CCcchHHHHHHHHHHHHHHhCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF----RLSLHHFNALLYLCSNSATD--PSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~----~pd~~ty~~ll~~~~~~~~~--~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
.=.+-|.+|. |.+++|.++|-+|-++.+ .....-|-.++.++..++.+ +..++..+...-+.|-+|
T Consensus 738 ~q~aei~~~~--g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~------ 809 (1189)
T KOG2041|consen 738 QQRAEISAFY--GEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEM------ 809 (1189)
T ss_pred HHhHhHhhhh--cchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHH------
Confidence 3444555554 678999999988876643 33445677777887776533 233444455555556665
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHH------HHHHhhh-hcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 99 PNEALVTSVARLAASKKDSDYAFE------LIKRMNN-EFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~------l~~~M~~-~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..|..-...|.+.|+.+.-.+ .|+++.. ...+.-|..-.-.+-+.+.+.|..+.|.+
T Consensus 810 ---~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 810 ---MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred ---HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 447777788888887765433 3444331 12233344445556677788888887776
No 203
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=78.06 E-value=29 Score=35.49 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=67.9
Q ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh-CCC----
Q 048764 25 NFLISLQ--SCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS-NNV---- 97 (295)
Q Consensus 25 t~~~li~--~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~-~g~---- 97 (295)
|=..+|+ .|.-.|+.+.|++-....+.. ..|..|-++|.+... ++-|.--+..|.. +|.
T Consensus 728 TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~R--------LDVAkVClGhm~~aRgaRAlR 793 (1416)
T KOG3617|consen 728 TRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRR--------LDVAKVCLGHMKNARGARALR 793 (1416)
T ss_pred HHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhcc--------ccHHHHhhhhhhhhhhHHHHH
Confidence 4445543 467789999998888776643 688999999988774 4445544444433 221
Q ss_pred ----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 98 ----IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 98 ----~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|+ .+=.-+.-....-|.+++|..++.+-+ . |..|=+.|-..|.+++|++
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck-R---------~DLlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK-R---------YDLLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH-H---------HHHHHHHHHhcccHHHHHH
Confidence 232 111112222345688888988888888 3 3334455666788888888
No 204
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=78.05 E-value=36 Score=27.73 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 048764 44 SLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFEL 123 (295)
Q Consensus 44 ~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l 123 (295)
+....+.+.+++|+...|..+|.++...+. ...+.++...++-||.......+-.+.. ....+.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~------------~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql 80 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQ------------FSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQL 80 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHH
Confidence 445566788999999999999998887772 4556677888888888877776655444 23334444
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-H--------HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 124 IKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-E--------QEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 124 ~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-e--------~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
=-+|....+ ..|..++..+-..|++-+|.+ . .....++.+-...++...-..+++-.
T Consensus 81 ~lDMLkRL~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 81 GLDMLKRLG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444431111 156778888999999988877 1 11345555555555544444444433
No 205
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=77.92 E-value=79 Score=31.63 Aligned_cols=205 Identities=16% Similarity=0.079 Sum_probs=117.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 32 SCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
.+-..||+..|..++.+..+.. +-+...|-.-+.+-.... ++++|+.+|..-.. ..|++..|.--++..
T Consensus 593 e~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~--------e~eraR~llakar~--~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFEND--------ELERARDLLAKARS--ISGTERVWMKSANLE 661 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccc--------cHHHHHHHHHHHhc--cCCcchhhHHHhHHH
Confidence 3334455555555555554432 223444444444333333 49999999998665 568889998888888
Q ss_pred HcCCCHHHHHHHHHHhhhhcCCCCCccc-HHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHH
Q 048764 112 ASKKDSDYAFELIKRMNNEFNVVPRLRT-YDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKV 178 (295)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~t-y~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a 178 (295)
-..++.++|++++++-. + .-|+-.- |-.+=+.+-..++++.|.. -|-|-.|.+.=-+.|.+-+|
T Consensus 662 r~ld~~eeA~rllEe~l-k--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rA 738 (913)
T KOG0495|consen 662 RYLDNVEEALRLLEEAL-K--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRA 738 (913)
T ss_pred HHhhhHHHHHHHHHHHH-H--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhH
Confidence 88899999999998876 2 2355433 3333344556667776666 33367777777778888888
Q ss_pred HHHHHHHHHcccCCC-hhHHHHHHHHHhccccCCcccchhHHHHHHHhc---CCccccCCCccccceEEeeeeeCCCCCc
Q 048764 179 YQYLQKLRSTVRCVN-EETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKN---GGGWHGLGWIGQGKWVVKRGSVDESGKC 254 (295)
Q Consensus 179 ~~ll~~m~~~~~~p~-~~t~~~l~~~~~~~~~g~~~~~~~~v~~~~~~~---g~~~~~~~w~~~~~w~~~~~~v~~~g~C 254 (295)
..+|++-+-. .|. ...|-..+++= .++|...-....+.+++++. |.-|...-|+....-. ..-.+|.--+|
T Consensus 739 R~ildrarlk--NPk~~~lwle~Ir~E--lR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r-kTks~DALkkc 813 (913)
T KOG0495|consen 739 RSILDRARLK--NPKNALLWLESIRME--LRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR-KTKSIDALKKC 813 (913)
T ss_pred HHHHHHHHhc--CCCcchhHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc-chHHHHHHHhc
Confidence 8888875543 332 33443322222 23343333334455555543 3335555555442222 22234444556
Q ss_pred C
Q 048764 255 C 255 (295)
Q Consensus 255 ~ 255 (295)
.
T Consensus 814 e 814 (913)
T KOG0495|consen 814 E 814 (913)
T ss_pred c
Confidence 5
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.03 E-value=9.8 Score=37.99 Aligned_cols=99 Identities=7% Similarity=0.046 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--
Q 048764 82 LRHGFRVFDQMLS-NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-- 158 (295)
..+-+++++.+.. .|.....-|.+--|.-+...|+..+|.++-.+.+ -||-+-|.-=+.+++..+++++-.+
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 3445555666644 4555666677777777888888888888888887 7888888888888888888887766
Q ss_pred ----HH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 ----EQ-EITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 ----e~-~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
.| -|.-++.+|.+.|+.++|..++-+.
T Consensus 739 kskksPIGy~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 739 KSKKSPIGYLPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hccCCCCCchhHHHHHHhcccHHHHhhhhhcc
Confidence 12 2888888888899999888888764
No 207
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=76.55 E-value=2 Score=33.51 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
+.|.-.+|..+|..|+++|-+|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44556788899999999998887 477777654
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=76.23 E-value=33 Score=32.58 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC-CCCCcccHHHHHHHHHhcCCHHHhhc-----------HHHH-HHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFN-VVPRLRTYDPALFCFCENLEAQKAYE-----------EQEI-TALLK 167 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g-i~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~y-~~ll~ 167 (295)
..+|-..|+.--+..-++.|..+|-+.. +.| +.|++..|+++|..+|. |+...|+. .+.| +-.+.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~r-k~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLR-KEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHh-ccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4677788888888888999999999999 888 78999999999998875 44444444 1112 33344
Q ss_pred HHHhcCCHHHHHHHHH
Q 048764 168 VSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 168 ~~~~~g~~~~a~~ll~ 183 (295)
.+.+.++-..|..+|+
T Consensus 475 fLi~inde~naraLFe 490 (660)
T COG5107 475 FLIRINDEENARALFE 490 (660)
T ss_pred HHHHhCcHHHHHHHHH
Confidence 4455555555555555
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.97 E-value=6.1 Score=23.99 Aligned_cols=33 Identities=21% Similarity=0.120 Sum_probs=27.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+|..+-.+|...|++++|.++|+... +. .|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l-~~--~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL-AL--DPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HH--CcCCH
Confidence 67788899999999999999999998 44 46643
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=75.91 E-value=19 Score=23.98 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=40.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
..|.+.++++.|+.+++.+.... +.+...+...=..+...+. +.+|...|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~--------~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGR--------YEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhcc--------HHHHHHHHHHHHHHC
Confidence 56889999999999999998763 2244444433334444442 999999999998743
No 211
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.67 E-value=38 Score=32.92 Aligned_cols=122 Identities=11% Similarity=0.078 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHh
Q 048764 79 DSALRHGFRVFDQMLS-NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A 156 (295)
.-.+....++|-++.. .+..+|..+++.|=-.|--.|++++|.+.|+... . +.|+ ...||-|=..++....-++|
T Consensus 407 ~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL-~--v~Pnd~~lWNRLGAtLAN~~~s~EA 483 (579)
T KOG1125|consen 407 SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAAL-Q--VKPNDYLLWNRLGATLANGNRSEEA 483 (579)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHH-h--cCCchHHHHHHhhHHhcCCcccHHH
Confidence 3347788888888865 5555777788888888889999999999999977 3 4565 56799999999988888888
Q ss_pred hc--------HHH-----HHHHHHHHHhcCCHHHHHHHHHH---HHHcccCC------ChhHHHHHHHHH
Q 048764 157 YE--------EQE-----ITALLKVSAGTGRVEKVYQYLQK---LRSTVRCV------NEETGKIIEDWF 204 (295)
Q Consensus 157 ~~--------e~~-----y~~ll~~~~~~g~~~~a~~ll~~---m~~~~~~p------~~~t~~~l~~~~ 204 (295)
.. .|. ||.=|. |...|.+++|...|-. |++.+..+ ++..|..|...+
T Consensus 484 IsAY~rALqLqP~yVR~RyNlgIS-~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~al 552 (579)
T KOG1125|consen 484 ISAYNRALQLQPGYVRVRYNLGIS-CMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLAL 552 (579)
T ss_pred HHHHHHHHhcCCCeeeeehhhhhh-hhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHH
Confidence 77 222 665553 5678889998877765 44442222 345787777555
No 212
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.52 E-value=6.6 Score=22.88 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+++.|-..|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3688999999999999999999999875
No 213
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.41 E-value=35 Score=28.70 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=40.3
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------------HH-HHHHHHHHHHhcCCHH
Q 048764 113 SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------------EQ-EITALLKVSAGTGRVE 176 (295)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------------e~-~y~~ll~~~~~~g~~~ 176 (295)
+.|| +.|++.|-.+. ..+.- +....-..|..|--.-|.+++.. .+ -+.+|...+-+.|+++
T Consensus 119 r~~d-~~A~~~fL~~E-~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLE-GTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred ccCc-HHHHHHHHHHc-CCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 4455 67777777777 55533 33444444555555667777666 11 2677888888888877
Q ss_pred HHH
Q 048764 177 KVY 179 (295)
Q Consensus 177 ~a~ 179 (295)
.|+
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 775
No 214
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.40 E-value=74 Score=30.02 Aligned_cols=175 Identities=11% Similarity=0.111 Sum_probs=96.8
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHH-HHHcCCCC-------------C-----
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLY-LCSNSATD-------------P----- 75 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~-~~~~~~~~-------------~----- 75 (295)
.+.+. -...+-..+...|+.++|...|++.+... |+. -.|..||. -|...+.. .
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 33444 67777788888888888888888765332 211 22333333 11111100 0
Q ss_pred ----CcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHH
Q 048764 76 ----SLKDSALRHGFRVFDQMLSNNVIPNEALVTSVA---RLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCF 147 (295)
Q Consensus 76 ----~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li---~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~ 147 (295)
+.....++.|+.+-+.-.. .|....-++| +++...|++++|.--|..-+ .+.| +..+|..|+.+|
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~----~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCID----SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSY 378 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhc----cCcccchHHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHH
Confidence 0011123444444433322 2222222222 34455677777777777654 3343 567788888888
Q ss_pred HhcCCHHHhhc--------------------------------------------HHHH----HHHHHHHHhcCCHHHHH
Q 048764 148 CENLEAQKAYE--------------------------------------------EQEI----TALLKVSAGTGRVEKVY 179 (295)
Q Consensus 148 ~~~g~~~~A~~--------------------------------------------e~~y----~~ll~~~~~~g~~~~a~ 179 (295)
.-.|.+.+|.- +|.| +.+-..|...|..+.+.
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i 458 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDII 458 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHH
Confidence 88777777765 2333 44555577788888888
Q ss_pred HHHHHHHHcccCCChhHHHHHHHHHh
Q 048764 180 QYLQKLRSTVRCVNEETGKIIEDWFS 205 (295)
Q Consensus 180 ~ll~~m~~~~~~p~~~t~~~l~~~~~ 205 (295)
.++++-.. ..|+...-..|-+.|.
T Consensus 459 ~LLe~~L~--~~~D~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 459 KLLEKHLI--IFPDVNLHNHLGDIMR 482 (564)
T ss_pred HHHHHHHh--hccccHHHHHHHHHHH
Confidence 88887543 3666666666655553
No 215
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=74.50 E-value=3 Score=32.56 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=26.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCS 69 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~ 69 (295)
.|.-.+|..+|..|.+.|-+|| .|+.||..+.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a~ 139 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKEAK 139 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHHhc
Confidence 4556789999999999999998 7888887553
No 216
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.04 E-value=12 Score=23.49 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYL 67 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~ 67 (295)
|....+.|-+.++..++++|.+.|+..+...|..+|..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33456778889999999999999999999999988863
No 217
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.96 E-value=8.1 Score=34.48 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHH
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFN 62 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~ 62 (295)
.-|+. -|+..|....+.||+++|+.|.+|.++.|+.--..+|-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 33454 88999999999999999999999999999755444443
No 218
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=73.84 E-value=43 Score=26.52 Aligned_cols=88 Identities=8% Similarity=0.006 Sum_probs=63.4
Q ss_pred CCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC-
Q 048764 56 LSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV--IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFN- 132 (295)
Q Consensus 56 pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g- 132 (295)
|....|+.-...+..+. +.+|.+.|+.+..+-- +-....--.|+.+|.+.+++++|...++... +..
T Consensus 9 ~~~~ly~~a~~~l~~~~---------Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi-rLhP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGN---------YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI-RLHP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCC---------HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCC
Confidence 44456666666777777 9999999999987422 1234566778999999999999999999988 443
Q ss_pred CCCCcccHHHHHHHHHhcCCHH
Q 048764 133 VVPRLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 133 i~P~~~ty~~ll~~~~~~g~~~ 154 (295)
-.| .+-|.-.+.|++.-...+
T Consensus 79 ~hp-~vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 79 THP-NVDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CCC-CccHHHHHHHHHHHHHhh
Confidence 233 367777777776655443
No 219
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.59 E-value=19 Score=22.59 Aligned_cols=42 Identities=12% Similarity=0.147 Sum_probs=32.0
Q ss_pred hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048764 60 HFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARL 110 (295)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~ 110 (295)
|...|+.+-.++- +.++..+++.|.+.|+.-+...|..+++-
T Consensus 5 TlGiL~~Ak~~Gl---------I~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 5 TLGILLLAKRRGL---------ISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred hHHHHHHHHHcCC---------hhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 4445555555555 77899999999999998888888887763
No 220
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=71.75 E-value=9.6 Score=22.14 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS 51 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~ 51 (295)
+++.+-..|...|++++|+.++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 788899999999999999999998763
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.62 E-value=54 Score=29.07 Aligned_cols=42 Identities=10% Similarity=-0.005 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY 66 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~ 66 (295)
-.+.+...-.+.||.+.|...|+...+..-+.|..+++.++.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 334444555555666666666655554444555555555444
No 222
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.40 E-value=8.8 Score=30.43 Aligned_cols=42 Identities=12% Similarity=0.000 Sum_probs=31.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..+|+.+...+..-.|.+++++++..+...+..|.--..+.|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 457777887777788999999999988778777653333444
No 223
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=68.64 E-value=1.3e+02 Score=29.95 Aligned_cols=126 Identities=12% Similarity=0.128 Sum_probs=85.2
Q ss_pred CCCcHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHH-HHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 19 NPNPET---NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNAL-LYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 19 ~~~p~~---t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~l-l~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
..+|.. ++--++..|-+.|+++.|+...+....+ .|+.+=.-.+ -+.+...+. +++|..++++-.+
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~--------l~eAa~~l~ea~e 433 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGL--------LDEAAAWLDEAQE 433 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHHh
Confidence 345555 5566799999999999999999988765 4544332222 235555553 9999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH----------HHHhcCCHHHhhc
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF----------CFCENLEAQKAYE 158 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~----------~~~~~g~~~~A~~ 158 (295)
-.. ||...=.--..-..++...++|.++..... ..|. +...+-.-++ +|.+.|.+..|+.
T Consensus 434 lD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFT-r~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 434 LDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFT-REGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred ccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhh-hccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 443 554433344555556889999999998887 6664 4444444333 5667777777777
No 224
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=68.09 E-value=23 Score=26.41 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHH
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSL-NFRLSLHHFNALLY 66 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~ty~~ll~ 66 (295)
..|+. ...+.|.+|.+.+|+..|+++|+-.+.. |.. ...|.-+|.
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 34554 8899999999999999999999988743 332 226766665
No 225
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.65 E-value=91 Score=27.91 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-HHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-EAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~~t 103 (295)
+...-=.-..+.+++.+|+..|.+...-. +-|.+-|..=-.+|.+.+ .++.|++=.+.-+.- -|+ ..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg--------~~~~AVkDce~Al~i--Dp~yska 151 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLG--------EYEDAVKDCESALSI--DPHYSKA 151 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhc--------chHHHHHHHHHHHhc--ChHHHHH
Confidence 33334455677889999999999887642 334444433333555555 266777666655442 233 567
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
|..|=.+|...|++++|.+-|+.-. .+.|+-.+|-.=|....
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaL---eldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKAL---ELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhh---ccCCCcHHHHHHHHHHH
Confidence 8888889999999999999988755 57788888877666544
No 226
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=67.21 E-value=1.1e+02 Score=28.67 Aligned_cols=36 Identities=11% Similarity=0.039 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
-.+.+++...|..|+++.|+++++.-+...-+.||.
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhh
Confidence 466778888888888888888888655333344443
No 227
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.18 E-value=19 Score=28.64 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=44.6
Q ss_pred cHhHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCC
Q 048764 22 PETNFLISLQSCTKSKD-LATAISLYESALSLNFRLSLHHFNALLYLCSNSA 72 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~ 72 (295)
..++|.+++.+.++..- --.++.+|+.|++.+.+++..-|..||..|.++.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~ 129 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGY 129 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Confidence 34589999999988777 5668899999999999999999999999998886
No 228
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=66.72 E-value=6.9 Score=31.55 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=24.6
Q ss_pred eCCCCCcCcCCCeeeEeeCChHHHHHHHHHHHHH
Q 048764 248 VDESGKCCSCGNQLACVDIDDAETERFAQSVAAL 281 (295)
Q Consensus 248 v~~~g~C~~c~~~l~~~~l~~~e~~~~~~~i~~~ 281 (295)
++.+..|+.||..|...| +.+.-+.|-+.|..|
T Consensus 125 ~~~~F~Cp~Cg~~L~~~d-n~~~i~~l~~~i~~l 157 (158)
T TIGR00373 125 MELNFTCPRCGAMLDYLD-NSEAIEKLEEQIKFL 157 (158)
T ss_pred HHcCCcCCCCCCEeeecc-CHHHHHHHHHHHHhh
Confidence 345799999999999888 555566666666554
No 229
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=66.64 E-value=9.6 Score=24.52 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=17.7
Q ss_pred CCCcCcCCCeeeEeeCChHHHHHHHHHHHHHH
Q 048764 251 SGKCCSCGNQLACVDIDDAETERFAQSVAALA 282 (295)
Q Consensus 251 ~g~C~~c~~~l~~~~l~~~e~~~~~~~i~~~~ 282 (295)
.+.||.|+..| +++.++.|.+.+..-.
T Consensus 20 ~~~CPlC~r~l-----~~e~~~~li~~~~~~i 46 (54)
T PF04423_consen 20 KGCCPLCGRPL-----DEEHRQELIKKYKSEI 46 (54)
T ss_dssp SEE-TTT--EE------HHHHHHHHHHHHHHH
T ss_pred CCcCCCCCCCC-----CHHHHHHHHHHHHHHH
Confidence 35999999876 8888898888775544
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=66.49 E-value=26 Score=21.08 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL 52 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~ 52 (295)
.|..+-..|.+.|++++|..+|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4667788899999999999999999875
No 231
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.07 E-value=97 Score=27.52 Aligned_cols=112 Identities=8% Similarity=0.031 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH-----HhcCCHHHh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF-----CENLEAQKA 156 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~-----~~~g~~~~A 156 (295)
+.-...++.+..+..-+-+.+....|.+.--+.||.+.|..+|+... +..-+.|..+++.++.-- .-+++.-.|
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve-k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a 271 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE-KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEA 271 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH-HHHhhhhccchhHHHHhhhhhheecccchHHH
Confidence 66667777777776666677777777777778888888888888766 444466666766655421 123333333
Q ss_pred hc-----------HHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHH
Q 048764 157 YE-----------EQEI---TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 157 ~~-----------e~~y---~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 198 (295)
.. .+.| -+|+..|. |+..+|...+..|.. +.|.+.+-+
T Consensus 272 ~r~~~~i~~~D~~~~~a~NnKALcllYl--g~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 272 HRFFTEILRMDPRNAVANNNKALCLLYL--GKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHhhccccCCCchhhhchHHHHHHHH--HHHHHHHHHHHHHhc--cCCccchhh
Confidence 33 1112 34555543 788899999999876 356555544
No 232
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=65.50 E-value=89 Score=26.93 Aligned_cols=83 Identities=7% Similarity=-0.036 Sum_probs=55.0
Q ss_pred CCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHhhhhcCC
Q 048764 56 LSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV--TSVARLAASKKDSDYAFELIKRMNNEFNV 133 (295)
Q Consensus 56 pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty--~~li~~~~~~g~~~~A~~l~~~M~~~~gi 133 (295)
+....|..-......++ +++|.+.|+++...-..+..... -.+..+|-+.++++.|...|++......-
T Consensus 31 ~~~~~Y~~A~~~~~~g~---------y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGN---------WKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC
Confidence 33445666666666676 99999999999885433322221 24566778899999999999998833333
Q ss_pred CCCcccHHHHHHHHH
Q 048764 134 VPRLRTYDPALFCFC 148 (295)
Q Consensus 134 ~P~~~ty~~ll~~~~ 148 (295)
.|+ +-|.-.+.+.+
T Consensus 102 ~~~-~~~a~Y~~g~~ 115 (243)
T PRK10866 102 HPN-IDYVLYMRGLT 115 (243)
T ss_pred CCc-hHHHHHHHHHh
Confidence 333 35666666655
No 233
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=64.89 E-value=56 Score=24.40 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
|+|+++|... +......++. .||.-.....-..+.+.|. |..|+..|-..|..++|++++.+
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr--------~~N~C~~~~~e~~L~~~~~---------~~eL~~lY~~kg~h~~AL~ll~~ 64 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLR--------LPNYCDLEEVEEVLKEHGK---------YQELVDLYQGKGLHRKALELLKK 64 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHc--------cCCcCCHHHHHHHHHHcCC---------HHHHHHHHHccCccHHHHHHHHH
Confidence 5677777776 5544443332 2343333333333333333 78999999999999999999999
Q ss_pred HHH
Q 048764 185 LRS 187 (295)
Q Consensus 185 m~~ 187 (295)
+..
T Consensus 65 l~~ 67 (108)
T PF10366_consen 65 LAD 67 (108)
T ss_pred Hhc
Confidence 987
No 234
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=64.30 E-value=1.2e+02 Score=31.32 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=64.9
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 83 RHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 83 ~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
+...+.+.++ .+.|+..+...+..+++.. .|++..++.+++++. .. ...+.+|+..+...+...... .
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLi-a~-~~~~~IT~e~V~allg~~~~~-------~ 250 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLL-AG-AGPEGVTYERAVALLGVTDSA-------L 250 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH-hh-cCCCCCCHHHHHHHhcCCCHH-------H
Confidence 3444444444 3367877777777666644 478999999999877 43 336678888777655443221 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
...+++++. .++...++.++++|...|..|.
T Consensus 251 I~~lidAL~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 251 IDEAVDALA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 445666665 5778889999999888776543
No 235
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=64.04 E-value=1.7e+02 Score=29.66 Aligned_cols=102 Identities=10% Similarity=0.015 Sum_probs=69.9
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 83 RHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 83 ~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
++....+... ...|+..+......+++.. .|++..|+.++++.. .+| -..++...+-..+.... +..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqai-a~g--~g~It~e~V~~lLG~~d-------~~~ 248 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAI-ALG--SGKVAENDVRQMIGAVD-------KQY 248 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHH-Hhc--CCCcCHHHHHHHHcccC-------HHH
Confidence 4444444444 3478888888888888755 699999999999988 665 23456655555443332 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
+..|++++.. ++...++.++++|...|..+....-
T Consensus 249 If~LldAL~~-~d~~~al~~l~~L~~~G~d~~~~l~ 283 (709)
T PRK08691 249 LYELLTGIIN-QDGAALLAKAQEMAACAVGFDNALG 283 (709)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5667777655 8899999999999998877664433
No 236
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.84 E-value=29 Score=33.36 Aligned_cols=78 Identities=13% Similarity=0.118 Sum_probs=57.3
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHH
Q 048764 77 LKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQK 155 (295)
Q Consensus 77 ~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~ 155 (295)
...|+++.|...|.+-..-. ++|.+.|+.=+.+|++.|++++|+.=-.+-+ .+.|++- -|+-.=.++.-.|++++
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~---~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTR---RLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHH---hcCCchhhHHHHhHHHHHhcccHHH
Confidence 45677888999998876543 3588889999999999999988876555544 4567753 46666666666778887
Q ss_pred hhc
Q 048764 156 AYE 158 (295)
Q Consensus 156 A~~ 158 (295)
|+.
T Consensus 89 A~~ 91 (539)
T KOG0548|consen 89 AIL 91 (539)
T ss_pred HHH
Confidence 777
No 237
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=63.37 E-value=1.4e+02 Score=30.02 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=47.1
Q ss_pred HcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------------------H-HHHHHHHHHH
Q 048764 112 ASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------------------E-QEITALLKVS 169 (295)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------------------e-~~y~~ll~~~ 169 (295)
-+...+..|-++|..|- + -..+++.+...++.++|+. | ..|.---.+|
T Consensus 758 k~l~~~gLAaeIF~k~g-D---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMG-D---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred hhccccchHHHHHHHhc-c---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHH
Confidence 33445566666666665 2 2345666777778888777 1 1155666789
Q ss_pred HhcCCHHHHHHHHHHHHHccc
Q 048764 170 AGTGRVEKVYQYLQKLRSTVR 190 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~~~~~ 190 (295)
-++|+-.+|..+++++..+-+
T Consensus 828 hkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 828 HKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHhcchHHHHHHHHHhhhhhh
Confidence 999999999999999876543
No 238
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=63.30 E-value=81 Score=30.02 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=87.1
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHH-------HHHHHhcC----------CCCCHHhHHHHHH-HHHcCCCCCCcchHHHH
Q 048764 22 PETNFLISLQSCTKSKDLATAISL-------YESALSLN----------FRLSLHHFNALLY-LCSNSATDPSLKDSALR 83 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~~~~A~~l-------f~~m~~~g----------~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~ 83 (295)
|....+.++.-+-+.|-.+.|+.+ |+-..+-| -..+...|..|-. +..+++ ++
T Consensus 294 ~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~---------~~ 364 (443)
T PF04053_consen 294 PKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGN---------IE 364 (443)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTB---------HH
T ss_pred ChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCC---------HH
Confidence 444678888888888888888765 33333333 2356788999988 666676 99
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHH
Q 048764 84 HGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEIT 163 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~ 163 (295)
-|.+-|..... |..|+-.|.-.|+.+.-..+.+.-. ..| -+|....++.-.|++++
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~-~~~------~~n~af~~~~~lgd~~~-------- 420 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE-ERG------DINIAFQAALLLGDVEE-------- 420 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH-HTT-------HHHHHHHHHHHT-HHH--------
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH-Hcc------CHHHHHHHHHHcCCHHH--------
Confidence 99999988643 7788888999999887777776666 555 47788888888888866
Q ss_pred HHHHHHHhcCCHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQ 180 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ 180 (295)
.++.+.+.|++.+|.-
T Consensus 421 -cv~lL~~~~~~~~A~~ 436 (443)
T PF04053_consen 421 -CVDLLIETGRLPEAAL 436 (443)
T ss_dssp -HHHHHHHTT-HHHHHH
T ss_pred -HHHHHHHcCCchHHHH
Confidence 4666777788777653
No 239
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=62.21 E-value=1.7e+02 Score=29.11 Aligned_cols=90 Identities=21% Similarity=0.127 Sum_probs=64.7
Q ss_pred CCCHHHHHH--HHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc-HHHHHHHHHhcCCHHHhhc------HHH-----HH
Q 048764 98 IPNEALVTS--VARLAASKKDSDYAFELIKRMNNEFNVVPRLRT-YDPALFCFCENLEAQKAYE------EQE-----IT 163 (295)
Q Consensus 98 ~pd~~ty~~--li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t-y~~ll~~~~~~g~~~~A~~------e~~-----y~ 163 (295)
+|....|+. ++.-|-+.|+++.|..+++.-. . =.|..+- |-+=-.-+.+.|+++.|.. +.+ .|
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI-d--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI-D--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-c--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 677777776 5667778999999999999977 3 3566543 3344477889999999988 111 22
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHccc
Q 048764 164 -ALLKVSAGTGRVEKVYQYLQKLRSTVR 190 (295)
Q Consensus 164 -~ll~~~~~~g~~~~a~~ll~~m~~~~~ 190 (295)
--.+...++++.++|..++....+.|.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 233445678889999998888877764
No 240
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=62.01 E-value=9.6 Score=31.40 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=26.3
Q ss_pred eCCCCCcCcCCCeeeEeeCChHHHHHHHHHHHHHH
Q 048764 248 VDESGKCCSCGNQLACVDIDDAETERFAQSVAALA 282 (295)
Q Consensus 248 v~~~g~C~~c~~~l~~~~l~~~e~~~~~~~i~~~~ 282 (295)
++....|+.||..|.-.| +.+.-+.|-+.|..|=
T Consensus 133 ~~~~F~Cp~Cg~~L~~~d-n~~~~~~l~~~I~~l~ 166 (178)
T PRK06266 133 MEYGFRCPQCGEMLEEYD-NSELIKELKEQIKELE 166 (178)
T ss_pred hhcCCcCCCCCCCCeecc-cHHHHHHHHHHHHHHH
Confidence 445799999999999887 5566777777777663
No 241
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.81 E-value=1.6e+02 Score=28.59 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=65.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhc
Q 048764 93 LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGT 172 (295)
Q Consensus 93 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~ 172 (295)
.+.|+..+......+++.. .|++..|..++++.. .+| ...+|...+-..+.... +...-.|++++..
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~i-a~~--~~~It~~~V~~~lg~~~-------~~~i~~ll~al~~- 258 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSI-AYG--NGKVLIADVKTMLGTIE-------PLLLFDILEALAA- 258 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHH-hcC--CCCcCHHHHHHHHCCCC-------HHHHHHHHHHHHc-
Confidence 4478887777777776653 699999999999887 665 34566665555433222 2224566676544
Q ss_pred CCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
++.+.+..++++|...|..|......++
T Consensus 259 ~d~~~~l~~~~~l~~~g~~~~~il~~l~ 286 (509)
T PRK14958 259 KAGDRLLGCVTRLVEQGVDFSNALADLL 286 (509)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 8899999999999999888865554443
No 242
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.60 E-value=16 Score=19.44 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIK 125 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~ 125 (295)
...+-.++...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456778888999999988876
No 243
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=61.12 E-value=2.7 Score=32.74 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSV 107 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~l 107 (295)
.+|+.+.+.+.+.....+++.+...+..-+....+.|+.+|...+. .++..++++. .+..-...+
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~--------~~~l~~~L~~-------~~~yd~~~~ 76 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDP--------YEKLLEFLKT-------SNNYDLDKA 76 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTT--------CCHHHHTTTS-------SSSS-CTHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCC--------chHHHHHccc-------ccccCHHHH
Confidence 3566666677777777777777766655666777777776655552 2344444441 111222344
Q ss_pred HHHHHcCCCHHHHHHHHHHhh
Q 048764 108 ARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~ 128 (295)
++.|-+.|.+++|.-++..|.
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCCT
T ss_pred HHHHHhcchHHHHHHHHHHcc
Confidence 555555555555555555544
No 244
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.45 E-value=74 Score=27.41 Aligned_cols=77 Identities=12% Similarity=0.130 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh--CCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS--NNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~--~g~~pd~ 101 (295)
|.+..|+...+.+.+.+|+.+..+=.+.. +.|..+-..|+. +|..++ +++|..-++-.-+ ....+-.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGd---------w~kAl~Ql~l~a~l~p~~t~~a 72 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGD---------WEKALAQLNLAATLSPQDTVGA 72 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcch---------HHHHHHHHHHHhhcCcccchHH
Confidence 45667888889999999999988766553 556677777888 666666 9999876665433 2334566
Q ss_pred HHHHHHHHHH
Q 048764 102 ALVTSVARLA 111 (295)
Q Consensus 102 ~ty~~li~~~ 111 (295)
.+|..+|++-
T Consensus 73 ~lyr~lir~e 82 (273)
T COG4455 73 SLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHHH
Confidence 7788777753
No 245
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=59.97 E-value=75 Score=31.96 Aligned_cols=135 Identities=12% Similarity=0.114 Sum_probs=87.4
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCHHhHHHHHHHHHc-CCCC------------CCcch
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSL-----N-FRLSLHHFNALLYLCSN-SATD------------PSLKD 79 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~-----g-~~pd~~ty~~ll~~~~~-~~~~------------~~~~~ 79 (295)
.+|+. -|..+.+..-..--++.|.++++.--.. | ...+...|......+.. -... .+.+.
T Consensus 453 k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 453 KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL 532 (777)
T ss_pred CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence 45555 6777666655555567777777653211 1 11122223333331111 1111 12455
Q ss_pred HHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 80 SALRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+.++.|.+-|..-+. ..|| .-.||.+-.+|.+.++-.+|+..+.+-. +.+ .-+...|.--+....+.|..+.|+.
T Consensus 533 ek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl-Kcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL-KCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred hhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh-hcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 568888888887665 2354 6679999999999999999999999998 777 5666667777777788899888866
No 246
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=59.45 E-value=2e+02 Score=30.35 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH--HHHhcCCHHHh
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF--CFCENLEAQKA 156 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~--~~~~~g~~~~A 156 (295)
.+....|..-|+.-..-. +-|...|..+..+|...|.+..|+.+|.... -+.|+. +|.-.-. .-|..|...+|
T Consensus 575 a~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 334667777777655432 3578999999999999999999999998765 234553 2332222 23556777666
Q ss_pred hc
Q 048764 157 YE 158 (295)
Q Consensus 157 ~~ 158 (295)
..
T Consensus 650 ld 651 (1238)
T KOG1127|consen 650 LD 651 (1238)
T ss_pred HH
Confidence 66
No 247
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=59.12 E-value=2.4 Score=33.05 Aligned_cols=108 Identities=16% Similarity=0.148 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcH
Q 048764 80 SALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEE 159 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e 159 (295)
+........++.+...+-.-+....|.++..|++.+..+...++++... . +-...++..|.+.|..+.|
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-~-------yd~~~~~~~c~~~~l~~~a--- 89 (143)
T PF00637_consen 21 NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-N-------YDLDKALRLCEKHGLYEEA--- 89 (143)
T ss_dssp T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-S-------S-CTHHHHHHHTTTSHHHH---
T ss_pred CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-c-------cCHHHHHHHHHhcchHHHH---
Confidence 4455666777777776666778888999999999987777777776333 1 3345677777777766543
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cccCCChhHHHHHHHHH
Q 048764 160 QEITALLKVSAGTGRVEKVYQYLQKLRS-------TVRCVNEETGKIIEDWF 204 (295)
Q Consensus 160 ~~y~~ll~~~~~~g~~~~a~~ll~~m~~-------~~~~p~~~t~~~l~~~~ 204 (295)
+-.|.+.|+.++|..++..+.. ....+++..|..+...+
T Consensus 90 ------~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~ 135 (143)
T PF00637_consen 90 ------VYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYC 135 (143)
T ss_dssp ------HHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHH
T ss_pred ------HHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3367777877777765333221 11223455565555544
No 248
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.12 E-value=13 Score=33.12 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=37.8
Q ss_pred CCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHH
Q 048764 97 VIPNEAL-VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPAL 144 (295)
Q Consensus 97 ~~pd~~t-y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll 144 (295)
+.||..+ ||..|+...+.||+++|+.|+++-+ ..|+.-=..||-..+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe-~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAE-RLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCchHHHHHHHHh
Confidence 4466555 7899999999999999999999999 999876555655444
No 249
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=58.00 E-value=10 Score=25.53 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=18.7
Q ss_pred CCHHHHHHHHHHHHhcC-CCCCHH
Q 048764 37 KDLATAISLYESALSLN-FRLSLH 59 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g-~~pd~~ 59 (295)
=|++.|+..|.+++..| ++|+.+
T Consensus 39 Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 39 WDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhc
Confidence 47999999999999766 666654
No 250
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=57.22 E-value=1e+02 Score=24.91 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 82 LRHGFRVFDQMLS-NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 82 ~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
.+++..++.-|.- +--.|...++-.+|. ...|++++|..+|+++. ... | ...|...|.++|-
T Consensus 26 ~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~-~~~--~-~~p~~kALlA~CL 88 (160)
T PF09613_consen 26 PDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELE-ERA--P-GFPYAKALLALCL 88 (160)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHh-ccC--C-CChHHHHHHHHHH
Confidence 8899999999876 222355566666664 67899999999999987 432 2 2345555555554
No 251
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=56.86 E-value=1.9e+02 Score=27.99 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH-HHH
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL-VTS 106 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t-y~~ 106 (295)
.+=.+|.+.++++.|+..|.+....-..||..+=.. ..+++.+..+..... .|+... .-.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk-----------------~~Ek~~k~~e~~a~~--~pe~A~e~r~ 363 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLK-----------------EAEKALKEAERKAYI--NPEKAEEERE 363 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHH-----------------HHHHHHHHHHHHHhh--ChhHHHHHHH
Confidence 344467778889999999988766655554322111 144444444443332 233211 111
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH-----HHHHHHHHHhcC-------C
Q 048764 107 VARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE-----ITALLKVSAGTG-------R 174 (295)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~-----y~~ll~~~~~~g-------~ 174 (295)
=-..+.+.|++..|...+.++. ... .-|.+.|+----+|.+.|.+..|+.... =-..+.+|.|.| +
T Consensus 364 kGne~Fk~gdy~~Av~~YteAI-kr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ 441 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAI-KRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE 441 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHH-hcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 1345567899999999999998 665 4567789988899999999988888111 113444555543 4
Q ss_pred HHHHHHHHHHHHHcccCCChhHHHHHH
Q 048764 175 VEKVYQYLQKLRSTVRCVNEETGKIIE 201 (295)
Q Consensus 175 ~~~a~~ll~~m~~~~~~p~~~t~~~l~ 201 (295)
+++|.+.+.+- +..++....++.
T Consensus 442 ydkAleay~ea----le~dp~~~e~~~ 464 (539)
T KOG0548|consen 442 YDKALEAYQEA----LELDPSNAEAID 464 (539)
T ss_pred HHHHHHHHHHH----HhcCchhHHHHH
Confidence 55555555553 344555555443
No 252
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.62 E-value=50 Score=25.73 Aligned_cols=60 Identities=8% Similarity=0.227 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 84 HGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
+..+-+..+....+.|+.....+-+++|-+-.|+..|.++|+-.+.+.| +.-..|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence 4556666777788899999999999999999999999999998873333 33334555443
No 253
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=55.57 E-value=2.4e+02 Score=28.70 Aligned_cols=187 Identities=12% Similarity=0.153 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+--+....|++..+-+.|++..-.-+.- ...|+.+-. +-+.+. -..|..++++-....-.|+..+
T Consensus 325 i~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~-~e~w~~~als~saag~---------~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 325 IFDHLTFALSRCGQFEVLAEQFEQALPFSFGE-HERWYQLALSYSAAGS---------DSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh-HHHHHHHHHHHHHhcc---------chHHHHHHHhhcccccCCCcch
Confidence 88888888899999999999999876443322 233443333 333333 3467777776544322344333
Q ss_pred -HHHHHHHHHc-CCCHHHHHHHHHHhhhh-c-----CCCCCcccHHHHHHHHHhc------CCHHHhhc-----------
Q 048764 104 -VTSVARLAAS-KKDSDYAFELIKRMNNE-F-----NVVPRLRTYDPALFCFCEN------LEAQKAYE----------- 158 (295)
Q Consensus 104 -y~~li~~~~~-~g~~~~A~~l~~~M~~~-~-----gi~P~~~ty~~ll~~~~~~------g~~~~A~~----------- 158 (295)
+-..-..|.. -+.+++++++..+.. . . -+.|- .|-.+=-+|... ....+++.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai-~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAI-SLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHH-HHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 3333334443 567777777666655 3 1 12232 333333333211 11112222
Q ss_pred --HH-HHHHHHHH---HHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCccc-c-hhHHHHHHHhcCC
Q 048764 159 --EQ-EITALLKV---SAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSC-D-LGLVKNAVLKNGG 228 (295)
Q Consensus 159 --e~-~y~~ll~~---~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~-~-~~~v~~~~~~~g~ 228 (295)
.+ +++++... |+-.++++.|.+..++....+..-+...|..+.-.|.. .++. + ...|-.++.+.|.
T Consensus 472 ~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa----~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 472 QFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSA----QKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred hcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHhhh
Confidence 11 13333333 55678999999999999998888889999888777754 2232 2 3445556666554
No 254
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.55 E-value=19 Score=22.20 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=22.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
.|.++|...|+.+.|.+++++.. ..|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl-~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI-EEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH-HcC
Confidence 36788999999999999999988 554
No 255
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=55.47 E-value=36 Score=23.63 Aligned_cols=83 Identities=19% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH---HHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA---LVTSV 107 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~---ty~~l 107 (295)
...++.|+++-...++ +.+..++. -.+.|..++..+. . ++++.+.+.|..|+.. -+|.|
T Consensus 2 ~~A~~~~~~~~~~~ll----~~~~~~~~-~~~~l~~A~~~~~---------~----~~~~~Ll~~g~~~~~~~~~g~t~L 63 (89)
T PF12796_consen 2 HIAAQNGNLEILKFLL----EKGADINL-GNTALHYAAENGN---------L----EIVKLLLENGADINSQDKNGNTAL 63 (89)
T ss_dssp HHHHHTTTHHHHHHHH----HTTSTTTS-SSBHHHHHHHTTT---------H----HHHHHHHHTTTCTT-BSTTSSBHH
T ss_pred HHHHHcCCHHHHHHHH----HCcCCCCC-CCCHHHHHHHcCC---------H----HHHHHHHHhcccccccCCCCCCHH
Confidence 4456677765554444 45544444 2234444665555 3 4555555677766653 35555
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 108 ARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
..+ +..|+. ++++.+. +.|..|+.
T Consensus 64 ~~A-~~~~~~----~~~~~Ll-~~g~~~~~ 87 (89)
T PF12796_consen 64 HYA-AENGNL----EIVKLLL-EHGADVNI 87 (89)
T ss_dssp HHH-HHTTHH----HHHHHHH-HTTT-TTS
T ss_pred HHH-HHcCCH----HHHHHHH-HcCCCCCC
Confidence 554 445554 4566666 66777765
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=55.42 E-value=1.4e+02 Score=28.62 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHcCCCHHHHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVAR-LAASKKDSDYAFELIKR 126 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~-~~~~~g~~~~A~~l~~~ 126 (295)
++.|.++++.+.++ -||...|.-.-. .+...|++++|.+.|+.
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~ 292 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFER 292 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555555555442 245444443332 23335555555555554
No 257
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=55.31 E-value=1e+02 Score=24.34 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=43.4
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhcH----------------HHHHHHHHHHHhcC
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYEE----------------QEITALLKVSAGTG 173 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~e----------------~~y~~ll~~~~~~g 173 (295)
.+..|+++.|++.|.+-. .+-| +...||.=.+++.-.|+.++|++. ..|.---..|...|
T Consensus 53 laE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 455677777777777655 2233 344577777777777777776660 00221122255567
Q ss_pred CHHHHHHHHHHHHHcc
Q 048764 174 RVEKVYQYLQKLRSTV 189 (295)
Q Consensus 174 ~~~~a~~ll~~m~~~~ 189 (295)
+-+.|..=|..-.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 7777776666554443
No 258
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=55.27 E-value=10 Score=24.29 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=26.8
Q ss_pred eeeeCC-CCCcCcCCCeeeEe----eCChHHHHHHHHHHHH
Q 048764 245 RGSVDE-SGKCCSCGNQLACV----DIDDAETERFAQSVAA 280 (295)
Q Consensus 245 ~~~v~~-~g~C~~c~~~l~~~----~l~~~e~~~~~~~i~~ 280 (295)
.+.++. .|.|.+|+..+.-| .++++++..+...+..
T Consensus 7 vC~~d~~~~~C~GC~RT~dEI~~W~~~s~~er~~i~~~l~~ 47 (51)
T PF06945_consen 7 VCKLDPSDGVCRGCGRTLDEIRDWKSMSDDERRAILARLRA 47 (51)
T ss_pred ccccCCCCCccCCCCCcHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 345666 79999999987544 5888888888776643
No 259
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=54.90 E-value=1.5e+02 Score=25.98 Aligned_cols=139 Identities=11% Similarity=0.051 Sum_probs=94.2
Q ss_pred CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 55 RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV--IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 55 ~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~--~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
.|-...|+.-+.....++ +.+|.+.|+.+..+.. +-...+--.++-++-+.++++.|...+++....++
T Consensus 32 ~p~~~LY~~g~~~L~~gn---------~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 32 LPASELYNEGLTELQKGN---------YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred CCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 355577888888777777 9999999999987543 23456667777888899999999999999874666
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHhhc------------------------HH--------------HH-HHHHHHHHhcC
Q 048764 133 VVPRLRTYDPALFCFCENLEAQKAYE------------------------EQ--------------EI-TALLKVSAGTG 173 (295)
Q Consensus 133 i~P~~~ty~~ll~~~~~~g~~~~A~~------------------------e~--------------~y-~~ll~~~~~~g 173 (295)
-.||. -|..-|.+++..-.++..-+ .+ .+ -.+-+.|.+.|
T Consensus 103 ~~~n~-dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 103 THPNA-DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CCCCh-hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66654 46666666664333222222 00 02 24456688899
Q ss_pred CHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 174 RVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 174 ~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
.+..|..-+++|.++ -+-+..+...|..+.
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~ 211 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLE 211 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHH
Confidence 999999999999987 233344444443333
No 260
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=54.22 E-value=2.1e+02 Score=27.49 Aligned_cols=118 Identities=8% Similarity=-0.046 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH---HHHcCCCCCCcchHHHHHHHHHHHHHHhC--CC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY---LCSNSATDPSLKDSALRHGFRVFDQMLSN--NV-- 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~---~~~~~~~~~~~~~~~~~~a~~lf~~M~~~--g~-- 97 (295)
.-+.+|++|...+ ++.-.....+..+. .|. ..|-.|.. .|..+. +..|.+.|..-.+. +-
T Consensus 48 l~grilnAffl~n-ld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~Y~~k~---------~~kal~~ls~w~~~~~~~~~ 114 (549)
T PF07079_consen 48 LGGRILNAFFLNN-LDLMEKQLMELRQQ--FGK-SAYLPLFKALVAYKQKE---------YRKALQALSVWKEQIKGTES 114 (549)
T ss_pred HhhHHHHHHHHhh-HHHHHHHHHHHHHh--cCC-chHHHHHHHHHHHHhhh---------HHHHHHHHHHHHhhhccccc
Confidence 4456777777543 44444444444432 232 33444433 333333 88888888776654 32
Q ss_pred ----------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCCcccHHHHHHHHHhcCCHHH
Q 048764 98 ----------IPNEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPRLRTYDPALFCFCENLEAQK 155 (295)
Q Consensus 98 ----------~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~~~ty~~ll~~~~~~g~~~~ 155 (295)
-+|-.-=++.++.+...|.+.+++.+++.|.. ...+..|..+|+.++-.++++=-++.
T Consensus 115 ~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl 185 (549)
T PF07079_consen 115 PWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL 185 (549)
T ss_pred chhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH
Confidence 23444446788888999999999999999873 23444899999998888888766554
No 261
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=53.36 E-value=2.5e+02 Score=28.22 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC------C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN------V 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g------~ 97 (295)
.|...|.-....+-++.++++|..-.+ .+...-+--|. ++.... +++|-+.+...+... -
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~---------~~eaa~~la~vln~d~f~sk~g 206 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDR---------LDEAAQRLATVLNQDEFVSKKG 206 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccc---------hHHHHHHHHHhcCchhhhhhcc
Confidence 666666666666666777777776543 23333555555 433333 777777777765532 2
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc--ccHHHHHHHHHhcCCHHHhhc
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL--RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~--~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+.|...|+-+-+..+++-+.-..+.+=.-|+.-.+.-||. .-|++|.+-|.++|.+++|..
T Consensus 207 kSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 207 KSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred cchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4566677777777766555443333322232112334554 356777777888888877777
No 262
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=52.31 E-value=89 Score=23.36 Aligned_cols=87 Identities=10% Similarity=0.018 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCH
Q 048764 38 DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDS 117 (295)
Q Consensus 38 ~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~ 117 (295)
..++|..+-+-+...+-.-..++.--+.++..+++ +++|..+.+.+ ..||...|-+|-. .+.|..
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~---------Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~ 84 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGD---------YQSALQLGNKL----CYPDLEPWLALCE--WRLGLG 84 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccch---------HHHHHHhcCCC----CCchHHHHHHHHH--HhhccH
Confidence 34566666555554442222222222222333444 77777766655 3577777766644 345556
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHH
Q 048764 118 DYAFELIKRMNNEFNVVPRLRTYD 141 (295)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ty~ 141 (295)
+.+..-+..|. .+| .|...+|.
T Consensus 85 s~l~~rl~rla-~sg-~p~lq~Fa 106 (115)
T TIGR02508 85 SALESRLNRLA-ASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHHHHH-hCC-CHHHHHHH
Confidence 66666666666 555 55555544
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.05 E-value=1.8e+02 Score=27.16 Aligned_cols=99 Identities=13% Similarity=0.077 Sum_probs=56.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-----CCCCCH---------HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 31 QSCTKSKDLATAISLYESALSL-----NFRLSL---------HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~-----g~~pd~---------~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
+.|.|.|++..|...|+...+. +..+.. .+++.|--.+.+.+ .+..|...-+..+..+
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~--------~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK--------EYKEAIESCNKVLELD 287 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh--------hHHHHHHHHHHHHhcC
Confidence 3678889999998888875421 111111 11111111112222 2677777777666533
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD 141 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~ 141 (295)
++|+...=-==.+|...|+++.|+..|..+. . +.|+-..-.
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~-k--~~P~Nka~~ 328 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKAL-K--LEPSNKAAR 328 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHH-H--hCCCcHHHH
Confidence 2444443333456777888888888888887 3 457655533
No 264
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.04 E-value=84 Score=31.77 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
-.+|.++-.+.+ .||-..|=-=|.+++..+++++-+++-+.++ . .+-|-+.+.+|.+.|+.++|..
T Consensus 700 ~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk-----s--PIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 700 NKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK-----S--PIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred hHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC-----C--CCCchhHHHHHHhcccHHHHhhhhh
Confidence 444444444433 3899999999999999999998888877776 3 5689999999999999999998
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 159 -EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 159 -e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
-..+.-.+.+|.+.|++.+|.++--+
T Consensus 769 rv~~l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 769 RVGGLQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccCChHHHHHHHHHhccHHHHHHHHHH
Confidence 33355788899999999988776544
No 265
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=51.97 E-value=40 Score=18.58 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL 52 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~ 52 (295)
.|..+-..|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5778888999999999999999988753
No 266
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=51.74 E-value=2.9e+02 Score=28.50 Aligned_cols=110 Identities=11% Similarity=0.077 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLS-NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
.++..+.++.+.+ .|+..+......+++ ...|++..|+.++++.. .++ -+.++...+-..+ |.++. .
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAi-a~~--~~~It~~~V~~~L---G~~d~----~ 247 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAI-AYS--ANEVTETAVSGML---GALDQ----T 247 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH-Hhc--cCCcCHHHHHHHh---CCCCH----H
Confidence 4556666666543 677777777766665 34789999999998877 544 1335554443332 22211 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
.+..|++.+. .++..+++.++++|...|..+......++..++
T Consensus 248 ~i~~ll~aL~-~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~ 290 (830)
T PRK07003 248 YMVRLLDALA-AGDGPEILAVADEMALRSLSFSTALQDLASLLH 290 (830)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 2455666554 488999999999998888777655555544333
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=51.37 E-value=19 Score=20.63 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAF 121 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~ 121 (295)
|-|..+|+.|-..|...|++++|.
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 346888999999999999999885
No 268
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.29 E-value=97 Score=30.68 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=69.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
-|+++.|.++-.+. -++.-|..|-++..+.|++..|.+.|..-. -|..|+-.+...|+.+.-..
T Consensus 650 lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR----------DLGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred cCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc----------chhhhhhhhhhcCChhHHHH
Confidence 34477787777664 367889999999999999999999998876 46677888888887763322
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
+-..|.-.-+|-..|+++++.++|-+
T Consensus 714 la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 22367777778889999998888765
No 269
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=50.70 E-value=1.3e+02 Score=24.52 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~l 181 (295)
..+..+.+-|++.|+.+.|++.|.+|. .+...|.. .|+. +-.+|+...-.+++..+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~-----~id~---------------~l~~irv~i~~~d~~~v~~~ 95 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGH-----KIDM---------------CLNVIRVAIFFGDWSHVEKY 95 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHH-----HHHH---------------HHHHHHHHHHhCCHHHHHHH
Confidence 568889999999999999999999999 66544432 3332 45567777777777777777
Q ss_pred HHHHHHc
Q 048764 182 LQKLRST 188 (295)
Q Consensus 182 l~~m~~~ 188 (295)
+.+....
T Consensus 96 i~ka~~~ 102 (177)
T PF10602_consen 96 IEKAESL 102 (177)
T ss_pred HHHHHHH
Confidence 7766553
No 270
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=50.49 E-value=2.4e+02 Score=27.10 Aligned_cols=116 Identities=14% Similarity=0.180 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHHHhCCC----CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH--HhcC
Q 048764 79 DSALRHGFRVFDQMLSNNV----IP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF--CENL 151 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~----~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~--~~~g 151 (295)
.+.+.+|.++|..+.+.-- .. .++.-+-+|++|... +.+.....+.+..+..| .-.|-+|..++ -+.+
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~----~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG----KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHhh
Confidence 3348899999988865321 11 255667788888876 56776666666662333 33456666554 4678
Q ss_pred CHHHhhc------H------------------HHH---HHHHHHHHhcCCHHHHHHHHHHHHHcccC----CChhHHHH
Q 048764 152 EAQKAYE------E------------------QEI---TALLKVSAGTGRVEKVYQYLQKLRSTVRC----VNEETGKI 199 (295)
Q Consensus 152 ~~~~A~~------e------------------~~y---~~ll~~~~~~g~~~~a~~ll~~m~~~~~~----p~~~t~~~ 199 (295)
+.++|.+ + ++| +...+++...|++++++.++.+|...-.. .+..+++.
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8888887 0 011 56677788999999999999999876555 56666654
No 271
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=50.47 E-value=2.4e+02 Score=27.05 Aligned_cols=18 Identities=22% Similarity=0.119 Sum_probs=10.3
Q ss_pred HHcCCCHHHHHHHHHHhh
Q 048764 111 AASKKDSDYAFELIKRMN 128 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~ 128 (295)
+....++++|.+.|..+.
T Consensus 315 ~~~~~~w~~A~~~f~~L~ 332 (468)
T PF10300_consen 315 HMFQHDWEEAAEYFLRLL 332 (468)
T ss_pred HHHHchHHHHHHHHHHHH
Confidence 444455666666666665
No 272
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=50.07 E-value=16 Score=30.03 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=30.9
Q ss_pred eCCCCCcCcCCCeeeEeeCChHHHHHHHHHHHHHHHhHHHh
Q 048764 248 VDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVK 288 (295)
Q Consensus 248 v~~~g~C~~c~~~l~~~~l~~~e~~~~~~~i~~~~~~~~~~ 288 (295)
+...+.|+.||..|+-.|-++ ..+.+.+.|..|-.+.++.
T Consensus 129 ~~~~F~Cp~Cg~~L~~~d~s~-~i~~l~~~i~~l~~~l~~~ 168 (176)
T COG1675 129 MELGFTCPKCGEDLEEYDSSE-EIEELESELDELEEELERN 168 (176)
T ss_pred HHhCCCCCCCCchhhhccchH-HHHHHHHHHHHHHHHHhcc
Confidence 455699999999999999665 6777778887777555543
No 273
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=49.39 E-value=2.7 Score=24.51 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=9.0
Q ss_pred CcCcCCCeeeEeeCChHHHHH
Q 048764 253 KCCSCGNQLACVDIDDAETER 273 (295)
Q Consensus 253 ~C~~c~~~l~~~~l~~~e~~~ 273 (295)
.|+.||..|+..-.+.+++++
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R 22 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRER 22 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-E
T ss_pred ccccccChhhhhcCCCCCccc
Confidence 588899888776666665544
No 274
>PLN02789 farnesyltranstransferase
Probab=49.32 E-value=2e+02 Score=25.97 Aligned_cols=27 Identities=7% Similarity=0.015 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS 51 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~ 51 (295)
++..+-..+...++.++|+.+++++.+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ 65 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR 65 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 444444555555566666666665553
No 275
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=49.30 E-value=2.1e+02 Score=26.04 Aligned_cols=51 Identities=20% Similarity=0.215 Sum_probs=29.2
Q ss_pred HhhhhcCCCCCc----ccHHHHHHHHHhcCC----HHHhhc-HHHHHHHHHHHHhcCCHHHH
Q 048764 126 RMNNEFNVVPRL----RTYDPALFCFCENLE----AQKAYE-EQEITALLKVSAGTGRVEKV 178 (295)
Q Consensus 126 ~M~~~~gi~P~~----~ty~~ll~~~~~~g~----~~~A~~-e~~y~~ll~~~~~~g~~~~a 178 (295)
+|+ +.++ |+. +.|++++++---... .+.|++ -..|.-||.++|..|+.+-.
T Consensus 281 e~k-~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 281 EMK-RNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHH-hcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHH
Confidence 555 5554 553 346666655332221 122222 44599999999999987743
No 276
>PF12029 DUF3516: Domain of unknown function (DUF3516); InterPro: IPR021904 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 460 to 473 amino acids in length. This domain is found associated with PF00270 from PFAM, PF00271 from PFAM.
Probab=49.21 E-value=19 Score=33.91 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=17.7
Q ss_pred cchHHHHHHHHHHHHHHhCCC
Q 048764 77 LKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 77 ~~~~~~~~a~~lf~~M~~~g~ 97 (295)
.+...+..|..||..++..||
T Consensus 91 ~~~~~~~ra~~i~r~L~~agv 111 (461)
T PF12029_consen 91 RQRRLIRRAIEIYRSLLDAGV 111 (461)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 455568899999999999996
No 277
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=48.48 E-value=1.8e+02 Score=25.07 Aligned_cols=81 Identities=14% Similarity=0.017 Sum_probs=52.2
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH----HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 21 NPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY----LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 21 ~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~----~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
+|...|..... +.+.|++++|...|+++...-- -+.......+. .+..++ +++|...|++..+..
T Consensus 31 ~~~~~Y~~A~~-~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~---------y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQ-KLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNAD---------LPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHhC
Confidence 44446676665 4668999999999999987532 23344433433 333344 999999999998854
Q ss_pred CCCCHHHHHHHHHHHH
Q 048764 97 VIPNEALVTSVARLAA 112 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~ 112 (295)
..-..+-|.-.+.|.+
T Consensus 100 P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 100 PTHPNIDYVLYMRGLT 115 (243)
T ss_pred cCCCchHHHHHHHHHh
Confidence 3333345555566554
No 278
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=47.79 E-value=2.3e+02 Score=26.22 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=101.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH----HHHcCCCC-------------------------CCcchHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY----LCSNSATD-------------------------PSLKDSA 81 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~----~~~~~~~~-------------------------~~~~~~~ 81 (295)
..+.-.|++..|+.-|.... ..|...|-++.+ +.+-+... ..++.|.
T Consensus 46 k~lla~~Q~sDALt~yHaAv----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAV----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence 34555778888888888774 456667777765 22333321 1368899
Q ss_pred HHHHHHHHHHHHhCCCC------------CCHHHH--HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVI------------PNEALV--TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCF 147 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~------------pd~~ty--~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~ 147 (295)
+++|..=|+..++.... |-.-.| -..+..+.-.||...|++++..+. .-- ..|...|..=-.+|
T Consensus 122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~ll-Ei~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLL-EIQ-PWDASLRQARAKCY 199 (504)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHH-hcC-cchhHHHHHHHHHH
Confidence 99999999998875421 111112 234556667899999999999988 332 45666777778899
Q ss_pred HhcCCHHHhhc-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 148 CENLEAQKAYE-------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 148 ~~~g~~~~A~~-------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
...|+...|+. +. +--+-..+...|+.+..+..+++-.. ..|+.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~-~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEG-HYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHH-HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 99999999988 11 22233445677777777666655433 34543
No 279
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=47.56 E-value=25 Score=23.38 Aligned_cols=45 Identities=16% Similarity=-0.012 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
++...++++.+... .-|-.---.+|.||...|++++|.++++++.
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55566666666442 1233444468999999999999999999886
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.56 E-value=1.6e+02 Score=30.27 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
+.+--..++.+.+.|. .+...-+.||.+|.+-++.+.-.++++.-. .|.. ..-....+..|.+++-.+.|..
T Consensus 413 IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~--~g~~--~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD--KGEW--FFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC--Ccce--eeeHHHHHHHHHHhChHHHHHHHHH
Confidence 5555566777777777 566777889999999999988877777654 3322 1225567888888888888877
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
..+-..|--.+-..+++++|+.++..|.
T Consensus 488 k~~~he~vl~ille~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFKKHEWVLDILLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HhccCHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 1111111112334578899988888763
No 281
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=47.43 E-value=86 Score=23.48 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhH-HHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEET-GKIIEDWF 204 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t-~~~l~~~~ 204 (295)
.++|+.+......-.|.++++.|+..+..++.+| |+.|..+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~ 53 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLE 53 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHH
Confidence 3567777777777789999999999888888775 45555444
No 282
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.25 E-value=2e+02 Score=25.35 Aligned_cols=145 Identities=10% Similarity=0.032 Sum_probs=80.8
Q ss_pred cCCHHHHHHHHHHHH---hcC-CCCCHHhHHHHHH--HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 048764 36 SKDLATAISLYESAL---SLN-FRLSLHHFNALLY--LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNEALVTSVA 108 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~---~~g-~~pd~~ty~~ll~--~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~~ty~~li 108 (295)
..+.++.+.++.+|. ..| ..++..+..-.+- +.-.+. .+.|...++++..+=. .+-+.-..+|.
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~---------~~lAq~C~~~L~~~fp~S~RV~~lkam~ 95 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGR---------DDLAQKCINQLRDRFPGSKRVGKLKAML 95 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcc---------hHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 456777777777765 234 5555544333222 333333 5667777777655321 11112222221
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVE 176 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~ 176 (295)
+-..|++++|.++++... ..+ ..|.++|--=|...--.|.--+|++ ..-|.-|-+.|...|+++
T Consensus 96 --lEa~~~~~~A~e~y~~lL-~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~ 171 (289)
T KOG3060|consen 96 --LEATGNYKEAIEYYESLL-EDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE 171 (289)
T ss_pred --HHHhhchhhHHHHHHHHh-ccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence 224567888888888887 544 4455555543444444454445555 222777777788888888
Q ss_pred HHHHHHHHHHHcccCCChh
Q 048764 177 KVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 177 ~a~~ll~~m~~~~~~p~~~ 195 (295)
+|.-.+++|.- .+|-..
T Consensus 172 kA~fClEE~ll--~~P~n~ 188 (289)
T KOG3060|consen 172 KAAFCLEELLL--IQPFNP 188 (289)
T ss_pred HHHHHHHHHHH--cCCCcH
Confidence 88888888764 345443
No 283
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.97 E-value=4.2e+02 Score=28.66 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=23.7
Q ss_pred eCCCCCcCc---CCCeeeEeeCChHHHHHHHHHH
Q 048764 248 VDESGKCCS---CGNQLACVDIDDAETERFAQSV 278 (295)
Q Consensus 248 v~~~g~C~~---c~~~l~~~~l~~~e~~~~~~~i 278 (295)
=+++|+|.+ -|++...++|.+-+.|--+..+
T Consensus 1185 r~eegkl~s~d~~g~ev~~leLedlq~E~vla~a 1218 (1480)
T KOG4521|consen 1185 RGEEGKLPSGDSSGTEVDLLELEDLQMEYVLASA 1218 (1480)
T ss_pred cCCCCCCCCCCCCCCceeEeEHHHHHHHHhhhHH
Confidence 456799987 6778999999888887765554
No 284
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=45.95 E-value=16 Score=29.15 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=28.7
Q ss_pred eCCCCCcCcCCCee---------------eEeeCChHHHHHHHHHHHHHHH
Q 048764 248 VDESGKCCSCGNQL---------------ACVDIDDAETERFAQSVAALAM 283 (295)
Q Consensus 248 v~~~g~C~~c~~~l---------------~~~~l~~~e~~~~~~~i~~~~~ 283 (295)
-....+|..||... +.-+||++|+|.|.++|..|.-
T Consensus 65 ~~~PsYC~~CGkpyPWt~~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~ 115 (158)
T PF10083_consen 65 YEAPSYCHNCGKPYPWTENALEAANELIEEDEELSPDEKEQFKESLPDLTK 115 (158)
T ss_pred CCCChhHHhCCCCCchHHHHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhh
Confidence 34678999999852 2456999999999999988773
No 285
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.46 E-value=1.2e+02 Score=24.86 Aligned_cols=45 Identities=18% Similarity=0.134 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+...+..++... ..|+..+|..++.++...|+.++|.++..++.
T Consensus 127 l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 127 LEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444443 46999999999999999999999999999987
No 286
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=45.25 E-value=3.5e+02 Score=27.53 Aligned_cols=85 Identities=11% Similarity=0.050 Sum_probs=57.9
Q ss_pred HHHHHHHH-HHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC---C----------CCCHHHHH
Q 048764 40 ATAISLYE-SALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN---V----------IPNEALVT 105 (295)
Q Consensus 40 ~~A~~lf~-~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g---~----------~pd~~ty~ 105 (295)
++....+. .+...|+..+......|+..+ .++ +..++.+++++...| + .++...+-
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A-~Gs---------lRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If 250 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA-AGS---------MRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLY 250 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh-CCC---------HHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHH
Confidence 33344443 344678888888777777754 344 888888887765533 1 13444555
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
.|+.++.. ++...++.++++|. ..|+.+.
T Consensus 251 ~LldAL~~-~d~~~al~~l~~L~-~~G~d~~ 279 (709)
T PRK08691 251 ELLTGIIN-QDGAALLAKAQEMA-ACAVGFD 279 (709)
T ss_pred HHHHHHHc-CCHHHHHHHHHHHH-HhCCCHH
Confidence 66666665 78999999999999 8887665
No 287
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=44.97 E-value=82 Score=27.14 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH---HhhhhcCCCCCcccHHHHHHH
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIK---RMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~---~M~~~~gi~P~~~ty~~ll~~ 146 (295)
...+.+++.+..+=++.. +-|.-+=-.++..||-.|++++|..-++ +|. ..-.+-..+|..+|.+
T Consensus 14 ~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~--p~~t~~a~lyr~lir~ 81 (273)
T COG4455 14 DNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS--PQDTVGASLYRHLIRC 81 (273)
T ss_pred hccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcC--cccchHHHHHHHHHHH
Confidence 334555555554433322 1233444456666666666666643333 332 1123444455555554
No 288
>PRK14136 recX recombination regulator RecX; Provisional
Probab=44.82 E-value=2.2e+02 Score=25.71 Aligned_cols=92 Identities=9% Similarity=0.009 Sum_probs=54.4
Q ss_pred hhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 15 KRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 15 ~~~~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
.++...++...|+..|..+++...- -.+|.+.|.+.|+.+ +.+..+++.+.+
T Consensus 154 ~~~~~~~~~~lk~kAL~lLSrReRS--e~ELr~KL~kkG~~e--------------------------e~IE~VIerLke 205 (309)
T PRK14136 154 SRASSRPARSLKGRALGYLSRREYS--RAELARKLAPYADES--------------------------DSVEPLLDALER 205 (309)
T ss_pred cccccccHHHHHHHHHHHhhccccc--HHHHHHHHHHcCCCH--------------------------HHHHHHHHHHHH
Confidence 3444444455888888887776433 346667777777643 345566666666
Q ss_pred CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 95 NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
.|..-|..--..+|+... +.+ .-..+-.++. .+||.++++
T Consensus 206 ~gYLDDeRFAesyVr~R~--~kk-Gp~rIrqELr-QKGId~eLI 245 (309)
T PRK14136 206 EGWLSDARFAESLVHRRA--SRV-GSARIVSELK-RHAVGDALV 245 (309)
T ss_pred cCCcCHHHHHHHHHHHHh--hch-hHHHHHHHHH-HcCCCHHHH
Confidence 676555555555565432 221 2245666777 888875543
No 289
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=43.81 E-value=2.4e+02 Score=28.52 Aligned_cols=81 Identities=10% Similarity=0.098 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 28 ISLQSCTKSKDLATAISLYESALSL--NFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~--g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
+|+.+|..+|++..+.++++..... |-+.=...||.-|+-..+.+.-+..+ -.+.|.+++++- -+.-|..||.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~--~~~~~~~~lq~a---~ln~d~~t~a 107 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTD--VLSNAKELLQQA---RLNGDSLTYA 107 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHH--HHHHHHHHHHHh---hcCCcchHHH
Confidence 7999999999999999999988744 44444567888888444443211000 033344444443 3566788888
Q ss_pred HHHHHHHc
Q 048764 106 SVARLAAS 113 (295)
Q Consensus 106 ~li~~~~~ 113 (295)
.|+.+--.
T Consensus 108 ll~~~sln 115 (1117)
T COG5108 108 LLCQASLN 115 (1117)
T ss_pred HHHHhhcC
Confidence 87765443
No 290
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=43.56 E-value=2.9e+02 Score=26.09 Aligned_cols=169 Identities=20% Similarity=0.205 Sum_probs=90.2
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHH--hHHHHHHHH--HcCCCCC----------------
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLN-FRLSLH--HFNALLYLC--SNSATDP---------------- 75 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~--ty~~ll~~~--~~~~~~~---------------- 75 (295)
.+.|.- .+.+.|...|..|+++.|+++.+.-+... +.+|+. .-..||.+- +..+.++
T Consensus 182 ~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pd 261 (531)
T COG3898 182 EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPD 261 (531)
T ss_pred hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence 444554 77889999999999999999999877543 556653 333445422 2222111
Q ss_pred -----------CcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHH
Q 048764 76 -----------SLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPA 143 (295)
Q Consensus 76 -----------~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~l 143 (295)
..+.|.+.++-.|++.+.+.-..|++. ++-.+++.|+. +++-++..+.-..++|| ..+--++
T Consensus 262 lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~v 335 (531)
T COG3898 262 LVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAV 335 (531)
T ss_pred cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHH
Confidence 124455666666666666655445432 12223344443 22222222211122343 3344455
Q ss_pred HHHHHhcCCHHHhhc-----------HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcccCCC
Q 048764 144 LFCFCENLEAQKAYE-----------EQEITALLKVSA-GTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 144 l~~~~~~g~~~~A~~-----------e~~y~~ll~~~~-~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
..+-...|++..|.. +.-|--|-+.-. ..|+.+++...+.+-...-+.|.
T Consensus 336 a~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPa 397 (531)
T COG3898 336 AEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPA 397 (531)
T ss_pred HHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCc
Confidence 556666676666555 222444444322 34777777777776655444443
No 291
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.52 E-value=1.9e+02 Score=24.08 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHH-----HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHH
Q 048764 82 LRHGFRVFDQMLSNNVIPN--EALV-----TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd--~~ty-----~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~ 154 (295)
++.|+.+|+.+.+.--.|+ .-.. -..+-.|.+.|.+++|.++++... . .|+....-.-|....+..+.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~-~---d~~~~~~r~kL~~II~~Kd~- 159 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLF-S---DPESQKLRMKLLMIIREKDP- 159 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh-c---CCCchhHHHHHHHHHHcccc-
Confidence 8999999999977544442 1122 234557889999999999999987 3 57777766666666666665
Q ss_pred HhhcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 155 KAYEEQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 155 ~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
|..+|.-+.=.--.+....++..
T Consensus 160 -------~h~~lqnFSy~~~~~ki~~~ve~ 182 (200)
T cd00280 160 -------AHPVLQNFSYSHFMQKMKSYVEL 182 (200)
T ss_pred -------ccHHHHhccHHHHHHHHHHHHHH
Confidence 45555544433333344444443
No 292
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.48 E-value=3.2e+02 Score=26.55 Aligned_cols=79 Identities=18% Similarity=0.166 Sum_probs=54.9
Q ss_pred HHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHHcC
Q 048764 48 SALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN---V----------IPNEALVTSVARLAASK 114 (295)
Q Consensus 48 ~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g---~----------~pd~~ty~~li~~~~~~ 114 (295)
.+.+.|+..+......++..+ .++ +..|..++++....| + .++....-.|++++..
T Consensus 190 il~~egi~~~~~al~~ia~~s-~Gs---------lR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~- 258 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA-NGS---------VRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA- 258 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc-CCc---------HHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-
Confidence 345678877777766666653 444 788888887766543 1 2444455566666655
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
++.+.++.++++|. ..|..|...
T Consensus 259 ~d~~~~l~~~~~l~-~~g~~~~~i 281 (509)
T PRK14958 259 KAGDRLLGCVTRLV-EQGVDFSNA 281 (509)
T ss_pred CCHHHHHHHHHHHH-HcCCCHHHH
Confidence 88999999999999 999887533
No 293
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.18 E-value=3.5e+02 Score=26.88 Aligned_cols=99 Identities=12% Similarity=0.092 Sum_probs=64.1
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 83 RHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 83 ~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
++..+.+... .+.|+..+......+++ ...|++..|+.++++.. .++- ...+|+..+...+....+- .
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~--~s~GdlR~aln~Ldql~-~~~~-~~~It~~~v~~llg~~~~~-------~ 248 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIR--AGGGSPRDTLSVLDQLL-AGAA-DTHVTYQRALGLLGATDVA-------L 248 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH-hccC-CCCcCHHHHHHHHCCCCHH-------H
Confidence 3334344433 34687777777766654 45689999999999987 5532 5678888777765443211 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
...+++++ ..++...++.++++|...|..|.
T Consensus 249 i~~lv~al-~~~d~~~al~~l~~l~~~g~d~~ 279 (584)
T PRK14952 249 IDDAVDAL-AADDAAALFGAIESVIDAGHDPR 279 (584)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34555644 45788888888888877776664
No 294
>PF13934 ELYS: Nuclear pore complex assembly
Probab=42.87 E-value=2.1e+02 Score=24.36 Aligned_cols=81 Identities=10% Similarity=0.163 Sum_probs=48.5
Q ss_pred hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 60 HFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
.|..++.++-.-+ ++++++|.+.+-+- .+.|+-.. -+|.++...|+.+.|+.++..+. |...+
T Consensus 78 ~~~~~~~g~W~LD------~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~------p~l~s 140 (226)
T PF13934_consen 78 KYIKFIQGFWLLD------HGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG------PPLSS 140 (226)
T ss_pred HHHHHHHHHHHhC------hHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC------CCCCC
Confidence 3445555444444 23477777777332 23333222 36777777899999999998876 54444
Q ss_pred HHH---HHHHHHhcCCHHHhhc
Q 048764 140 YDP---ALFCFCENLEAQKAYE 158 (295)
Q Consensus 140 y~~---ll~~~~~~g~~~~A~~ 158 (295)
... ++.. ...+.+.+|+.
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHH
Confidence 432 2333 45578888877
No 295
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=42.71 E-value=14 Score=24.31 Aligned_cols=26 Identities=35% Similarity=0.728 Sum_probs=22.1
Q ss_pred cccceEEeeeeeCCCCCcCcCCCeee
Q 048764 237 GQGKWVVKRGSVDESGKCCSCGNQLA 262 (295)
Q Consensus 237 ~~~~w~~~~~~v~~~g~C~~c~~~l~ 262 (295)
|...|.+.+.-+|.--+|..||..+-
T Consensus 17 G~~~Wei~R~GaDikikC~gCg~~im 42 (57)
T PF06107_consen 17 GSNEWEIIRIGADIKIKCLGCGRQIM 42 (57)
T ss_pred CCCEEEEEEccCcEEEEECCCCCEEE
Confidence 45689999999999999999998753
No 296
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=42.68 E-value=93 Score=30.02 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=76.9
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHhH--HHHHHHHHcCCCCC-----------CcchHHH
Q 048764 19 NPNPETNFLISLQSCTKSKDLATAISLYESALSLN---FRLSLHHF--NALLYLCSNSATDP-----------SLKDSAL 82 (295)
Q Consensus 19 ~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g---~~pd~~ty--~~ll~~~~~~~~~~-----------~~~~~~~ 82 (295)
.+.|+-...-+|-+--.+..+.+|..+|.+..+.| ...+.... ...-......+..+ +-+-|..
T Consensus 196 ei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~ 275 (539)
T PF04184_consen 196 EINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRL 275 (539)
T ss_pred HhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCCh
Confidence 34444433334444445666889999998876554 22221111 11000000000000 1133569
Q ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC--cccHHHHHHHHHhcCC
Q 048764 83 RHGFRVFDQMLSNN-VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR--LRTYDPALFCFCENLE 152 (295)
Q Consensus 83 ~~a~~lf~~M~~~g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~--~~ty~~ll~~~~~~g~ 152 (295)
++|.+.|.+|.+.. ..-+....-.||..+-..+.+.++..++.+-. +.. -|+ ..+|+..|-.+...|+
T Consensus 276 ~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd-Di~-lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 276 REAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD-DIS-LPKSATICYTAALLKARAVGD 346 (539)
T ss_pred HHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc-ccc-CCchHHHHHHHHHHHHHhhcc
Confidence 99999999997643 22345677889999999999999999998876 433 244 4568877766555554
No 297
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=42.47 E-value=4.5e+02 Score=27.99 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH
Q 048764 39 LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSD 118 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~ 118 (295)
...|+..|-+..+-.+.. ...|..|=..|+...+ ..+|.+-|..--+-+- -|.-.+....+.|+...+++
T Consensus 474 ~~~al~ali~alrld~~~-apaf~~LG~iYrd~~D--------m~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSL-APAFAFLGQIYRDSDD--------MKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHHHHHHHHHhcccch-hHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHH
Confidence 556666665544332211 2345555554444432 5555555555433211 23344555555555555555
Q ss_pred HHHHH------------------------------------HHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc---
Q 048764 119 YAFEL------------------------------------IKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 119 ~A~~l------------------------------------~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
.|+.+ |+.-. -+.| |...|..|-.+|-++|....|.+
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 55544 33322 2333 44567777777777777766666
Q ss_pred -------HHHHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 048764 159 -------EQEITALLKV--SAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 159 -------e~~y~~ll~~--~~~~g~~~~a~~ll~~m~ 186 (295)
+..|.-...+ -|..|.+.+|.+.+....
T Consensus 621 kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred hhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2223322222 345566666666666543
No 298
>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.31 E-value=23 Score=26.93 Aligned_cols=30 Identities=37% Similarity=0.597 Sum_probs=25.0
Q ss_pred eeCChHHHHHHHHHHHHHHHhHHHh-hccCc
Q 048764 264 VDIDDAETERFAQSVAALAMEQEVK-ANFSE 293 (295)
Q Consensus 264 ~~l~~~e~~~~~~~i~~~~~~~~~~-~~~~~ 293 (295)
+-++++|++.+...|-+|++.|..| .+|-+
T Consensus 21 v~~dd~ek~~~~~~vh~lvs~Rd~K~~~~~~ 51 (143)
T KOG0935|consen 21 VQFDDDEKQKLIEEVHALVTVRDAKHTNFVE 51 (143)
T ss_pred eccCchHHHHHHHHHHHHHhhccchhhhhee
Confidence 4478999999999999999999998 44433
No 299
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=41.81 E-value=3.4e+02 Score=27.72 Aligned_cols=109 Identities=11% Similarity=0.005 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC----CCCCcccHHHHHHHHH--
Q 048764 83 RHGFRVFDQMLS--------NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFN----VVPRLRTYDPALFCFC-- 148 (295)
Q Consensus 83 ~~a~~lf~~M~~--------~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g----i~P~~~ty~~ll~~~~-- 148 (295)
++...++..... .++..+..+...++... .||...++.+++... ... ..+..+|...+-....
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~-~~~~~~~~~~i~It~~~~~e~l~~~ 247 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAV-ESTPPDEDGLIDITLAIAEESIQQR 247 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH-HhcccCCCCceeccHHHHHHHHHHh
Confidence 455555555443 35666777777777643 899999999998865 321 1111133333322221
Q ss_pred -----hcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHH
Q 048764 149 -----ENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKI 199 (295)
Q Consensus 149 -----~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~ 199 (295)
+.|+.. -...+++++. ++.++.+.|+..+.+|.+.|..|......+
T Consensus 248 ~~~ydk~gd~h----yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl 298 (725)
T PRK13341 248 AVLYDKEGDAH----FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRM 298 (725)
T ss_pred hhhcccCCCCC----HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 222211 0112344443 467899999999999999887776554444
No 300
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=41.52 E-value=43 Score=22.21 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
-.+|.++...|++++|.+++.++..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999866
No 301
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=41.17 E-value=22 Score=27.36 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCeeeEeeCChHHHHHHHHHHHHHH
Q 048764 258 GNQLACVDIDDAETERFAQSVAALA 282 (295)
Q Consensus 258 ~~~l~~~~l~~~e~~~~~~~i~~~~ 282 (295)
-..|...|++++|+.+|++.|..-|
T Consensus 39 P~~l~~~DVs~eDW~~F~~dl~~aa 63 (123)
T PF15496_consen 39 PPPLASHDVSEEDWTRFLNDLSEAA 63 (123)
T ss_pred CchhhhcCCCHHHHHHHHHHHHHHH
Confidence 4568899999999999999997665
No 302
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.06 E-value=2.5e+02 Score=24.69 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=65.1
Q ss_pred hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 60 HFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN----VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g----~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
.|+.-+.++..++ +..|...|..-++.. ..||. +=.|-..+...|+++.|-.+|..+...++=.|
T Consensus 144 ~Y~~A~~~~ksgd---------y~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGD---------YAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 5777777777777 777887777776632 12333 33366777778888888888877763332222
Q ss_pred CcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 136 RLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 136 ~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
..- .+ +--|-....+.|+-++|..+|.++... .|+....
T Consensus 213 KAp--da-------------------llKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~aA 251 (262)
T COG1729 213 KAP--DA-------------------LLKLGVSLGRLGNTDEACATLQQVIKR--YPGTDAA 251 (262)
T ss_pred CCh--HH-------------------HHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCHHH
Confidence 210 11 222344466888999999999998774 4655443
No 303
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.85 E-value=1.1e+02 Score=22.78 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS 51 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~ 51 (295)
-|..++..|-..|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 689999999999999999999998877
No 304
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=40.75 E-value=1.8e+02 Score=22.98 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=57.0
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHH---HHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 19 NPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNA---LLY-LCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 19 ~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~---ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
..+|...|+.-... .+.|++++|...|+.+..+ .+.+..+=.. |+. .+..+. ++.|...++...+
T Consensus 7 ~~~~~~ly~~a~~~-l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~---------y~~A~a~~~rFir 75 (142)
T PF13512_consen 7 DKSPQELYQEAQEA-LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGD---------YEEAIAAYDRFIR 75 (142)
T ss_pred CCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccC---------HHHHHHHHHHHHH
Confidence 34445577777764 5678999999999998765 3444444443 444 344444 9999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHcCC
Q 048764 95 NNVIPNEALVTSVARLAASKK 115 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~~~g 115 (295)
.+..---+-|--.+.|++...
T Consensus 76 LhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 76 LHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred hCCCCCCccHHHHHHHHHHHH
Confidence 554322366777777766543
No 305
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.66 E-value=1.8e+02 Score=23.00 Aligned_cols=132 Identities=14% Similarity=0.237 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHH
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
.+++..++..+...+ .|..-||.+|--..-+-+-+-.+++++..-.-+.+.|=. -.-.++.+|.+.|...+-
T Consensus 17 ~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se~---- 88 (161)
T PF09205_consen 17 DVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSEY---- 88 (161)
T ss_dssp -HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HH----
T ss_pred hHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHHH----
Confidence 388899999888763 455667777765555556666667766654223333311 123578888888776542
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccchhHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVL 224 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~~~~v~~~~~ 224 (295)
...-|+.+...|.-|+-.++..++.. .-+++++...-|...| ...|..+-.-+.++++..
T Consensus 89 -vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay--~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 89 -VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAY--KKLGNTREANELLKEACE 148 (161)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHH--HHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHH--HHhcchhhHHHHHHHHHH
Confidence 35668889999999999999888865 3467777777777777 345544333344444433
No 306
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.41 E-value=3.5e+02 Score=26.21 Aligned_cols=100 Identities=11% Similarity=0.010 Sum_probs=64.7
Q ss_pred HHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
.++....+... .+.|+..+......++... .|++..|..+++.+. ..+ +.+|...+...+...- +.
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~-~~~---~~It~~~V~~~l~~~~-------~~ 243 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLL-ALG---TPVTRKQVEEALGLPP-------QE 243 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH-hcC---CCCCHHHHHHHHCCCc-------HH
Confidence 44555555544 4478877777777777643 588999999888877 542 3466555444432222 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
..-.|++++ ..++.++|+.++.+|...|..|...
T Consensus 244 ~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~~I 277 (504)
T PRK14963 244 RLRGIAAAL-AQGDAAEALSGAAQLYRDGFAARTL 277 (504)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 245566666 5588899999999998888665543
No 307
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.74 E-value=2.6e+02 Score=24.56 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC-CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN----FRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN-VI 98 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g----~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g-~~ 98 (295)
-|+..+. +.+.|++..|...|....+.. ..||. +--|-. .|..++ +++|-.+|..+.+.- -.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~---------y~~Aa~~f~~~~k~~P~s 211 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGD---------YEDAAYIFARVVKDYPKS 211 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhccc---------chHHHHHHHHHHHhCCCC
Confidence 7999998 556788999999999988653 23332 233445 677777 999999999997732 11
Q ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 99 PN-EALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 99 pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
|- .-++--|-......|+-++|..+|++..
T Consensus 212 ~KApdallKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 212 PKAPDALLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 21 1344445556678899999999999987
No 308
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.28 E-value=3.2e+02 Score=25.36 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHc--CCCHHHHHHHHHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEA--LVTSVARLAAS--KKDSDYAFELIKRMN 128 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~--ty~~li~~~~~--~g~~~~A~~l~~~M~ 128 (295)
+..|.++|+++... ++++.. .|..+..+|-. .-+.++|.+.|+...
T Consensus 147 y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 147 YGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999987 766665 56666677775 678889999999877
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.01 E-value=77 Score=19.51 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNF 54 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~ 54 (295)
+=.+|...|+.+.|..++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 44689999999999999999987664
No 310
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=38.79 E-value=6.8 Score=24.55 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=27.3
Q ss_pred eCCCCCcCcCCCeeeEeeCChHHHHHHHHHH
Q 048764 248 VDESGKCCSCGNQLACVDIDDAETERFAQSV 278 (295)
Q Consensus 248 v~~~g~C~~c~~~l~~~~l~~~e~~~~~~~i 278 (295)
|.....|..|-..|..++.++..++.|.++|
T Consensus 15 I~~~fIC~~CE~~iv~~~~~d~~Y~~y~~~l 45 (46)
T PF10764_consen 15 IYGKFICSDCEKEIVNTETDDPKYEFYKKQL 45 (46)
T ss_pred EECeEehHHHHHHhccCCCCCCCHHHHHHhc
Confidence 4456789999999999999999999998765
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=38.77 E-value=1.7e+02 Score=21.95 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
.-++|..|-+-+...+-. .+.+--+=+..+...|++++|..+.+.+. .||...|.+|-.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-----~pdlepw~ALce 78 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC-----YPDLEPWLALCE 78 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC-----CchHHHHHHHHH
Confidence 367888888877665422 34444444456678999999999988875 899999777654
No 312
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.76 E-value=1.9e+02 Score=25.32 Aligned_cols=48 Identities=10% Similarity=0.286 Sum_probs=31.3
Q ss_pred CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048764 55 RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAA 112 (295)
Q Consensus 55 ~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~ 112 (295)
.|.....-.+|..|.... +++|.++|.++.+.|..|. ...+++.+.+-
T Consensus 236 ~PhP~~v~~ml~~~~~~~---------~~~A~~il~~lw~lgysp~-Dii~~~FRv~K 283 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLKRN---------IDEALKILAELWKLGYSPE-DIITTLFRVVK 283 (333)
T ss_pred CCChHHHHHHHHHHHhcc---------HHHHHHHHHHHHHcCCCHH-HHHHHHHHHHH
Confidence 455566666677776666 7777777777777777665 34455555543
No 313
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.53 E-value=1e+02 Score=21.98 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIE 201 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~ 201 (295)
++++.+.+..-.++|+++++-|...| ..+++....|.
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L~ 72 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKALR 72 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 57777888888899999999998877 55666665553
No 314
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=38.21 E-value=4e+02 Score=26.20 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=63.6
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 83 RHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 83 ~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
++....+... .+.|+..+......++.. ..|++..|+.+++... .++ -+.+|+..+...+..... ..
T Consensus 181 ~ei~~~L~~i~~~egi~i~~~al~~ia~~--s~G~~R~al~~Ldq~~-~~~--~~~It~~~V~~vlg~~~~-------~~ 248 (559)
T PRK05563 181 EDIVERLKYILDKEGIEYEDEALRLIARA--AEGGMRDALSILDQAI-SFG--DGKVTYEDALEVTGSVSQ-------EA 248 (559)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH-Hhc--cCCCCHHHHHHHhCCCCH-------HH
Confidence 3444444443 346888887777776663 3589999999999887 665 345677666655433322 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
...|++++ ..++...|+.++.+|...|..|.
T Consensus 249 i~~l~~al-~~~d~~~al~~l~~l~~~g~d~~ 279 (559)
T PRK05563 249 LDDLVDAI-VEGDVAKALKILEELLDEGKDPN 279 (559)
T ss_pred HHHHHHHH-HccCHHHHHHHHHHHHHcCCCHH
Confidence 44566655 34678888888888888777664
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.17 E-value=2.1e+02 Score=22.94 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLS-NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
.+++..+++.|.- +--.|...+|-..|. ...|++++|.++|++.. ..+. ...|...|.++|-...-| +
T Consensus 26 ~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i~rg~w~eA~rvlr~l~-~~~~---~~p~~kAL~A~CL~al~D-----p 94 (153)
T TIGR02561 26 PYDAQAMLDALRVLRPNLKELDMFDGWLL--IARGNYDEAARILRELL-SSAG---APPYGKALLALCLNAKGD-----A 94 (153)
T ss_pred HHHHHHHHHHHHHhCCCccccchhHHHHH--HHcCCHHHHHHHHHhhh-ccCC---CchHHHHHHHHHHHhcCC-----h
Confidence 8899999999876 222355667776665 67899999999999998 4331 226777777777543222 2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
+|...-......+.-.++..+.+.+.
T Consensus 95 ~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 35444444445566666777777766
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=37.74 E-value=2.2e+02 Score=23.03 Aligned_cols=105 Identities=14% Similarity=0.105 Sum_probs=59.6
Q ss_pred CcHhHHHHH---HHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 21 NPETNFLIS---LQSCTKSKDLATAISLYESALSL-NFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 21 ~p~~t~~~l---i~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.|+...+.| +..-.+.++.+++..+++.|+-- .-.|...+|-..|+. .++. +.+|..+|+++....
T Consensus 5 C~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~---------w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 5 CSDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGD---------WDDALRLLRELEERA 74 (160)
T ss_pred CcHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCC---------HHHHHHHHHHHhccC
Confidence 344444444 45556788999999999998743 123344455555543 3344 999999999987754
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHH-HhhhhcCCCCCccc
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIK-RMNNEFNVVPRLRT 139 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~-~M~~~~gi~P~~~t 139 (295)
|....-.+|+..|-+. .-|-.++.+. ++. ..+-.|+.+.
T Consensus 75 --~~~p~~kALlA~CL~~-~~D~~Wr~~A~evl-e~~~d~~a~~ 114 (160)
T PF09613_consen 75 --PGFPYAKALLALCLYA-LGDPSWRRYADEVL-ESGADPDARA 114 (160)
T ss_pred --CCChHHHHHHHHHHHH-cCChHHHHHHHHHH-hcCCChHHHH
Confidence 4434444555444432 2233333333 344 4443444433
No 317
>PRK15331 chaperone protein SicA; Provisional
Probab=37.60 E-value=2.2e+02 Score=23.11 Aligned_cols=88 Identities=15% Similarity=0.029 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 59 HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
..|..--++|..++ +++|..+|.-+...+. -|..-|..|-..|=..+++++|..+|...- ..+ .-|.+
T Consensus 39 ~iY~~Ay~~y~~Gk---------~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~-~l~-~~dp~ 106 (165)
T PRK15331 39 GLYAHAYEFYNQGR---------LDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAF-TLL-KNDYR 106 (165)
T ss_pred HHHHHHHHHHHCCC---------HHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hcc-cCCCC
Confidence 35555556777777 9999999998876443 233445666666666899999999998765 433 23333
Q ss_pred cHHHHHHHHHhcCCHHHhhc
Q 048764 139 TYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 139 ty~~ll~~~~~~g~~~~A~~ 158 (295)
.+--+-.+|...|+.+.|..
T Consensus 107 p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred ccchHHHHHHHhCCHHHHHH
Confidence 43334455555666655543
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=37.60 E-value=1.1e+02 Score=28.10 Aligned_cols=73 Identities=10% Similarity=-0.009 Sum_probs=49.0
Q ss_pred HHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc--HH--HH-HHHHHHHHhcCCHHHHHHHHH
Q 048764 110 LAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE--EQ--EI-TALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~--e~--~y-~~ll~~~~~~g~~~~a~~ll~ 183 (295)
-|.+.|.+++|++.+..-. .+.| |.++|..=..+|.+...+..|.. +. .. -..+.+|.|.+....++..+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 4678899999999988755 4567 88888888888888777766555 11 11 234666777666555555555
Q ss_pred HH
Q 048764 184 KL 185 (295)
Q Consensus 184 ~m 185 (295)
+-
T Consensus 183 EA 184 (536)
T KOG4648|consen 183 EA 184 (536)
T ss_pred HH
Confidence 44
No 319
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.99 E-value=3e+02 Score=24.34 Aligned_cols=121 Identities=6% Similarity=0.020 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|--++=+..-.|+.+.|...++++.++- |...-...|=. .+-..+ ..++|.++|+.+++.+ +-|.++
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~--------~~~~A~e~y~~lL~dd-pt~~v~ 122 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATG--------NYKEAIEYYESLLEDD-PTDTVI 122 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhh--------chhhHHHHHHHHhccC-cchhHH
Confidence 44444445555667777777777776553 43322222222 222222 2889999999999877 567788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|--=|-..-..|+.-+|++-+.+.. + -+.-|...|.-|-.-|...|++++|.-
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL-~-~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYL-D-KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHH-H-HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 8755555555666667877777665 2 235788899999999999999998877
No 320
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.81 E-value=1.2e+02 Score=23.30 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 048764 84 HGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKR 126 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~ 126 (295)
++.++|..|..+|+.-. ...|..--..+...|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78889999988887544 56678888888888999999888864
No 321
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=36.59 E-value=30 Score=32.73 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=37.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHH
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL----VTSVARLA 111 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t----y~~li~~~ 111 (295)
..++++|+.+-++..+.|.+.++. - +-.|-+++.++.++|+.||.+| .-..+++|
T Consensus 216 a~~ldeAl~~a~~~~~ag~p~SIg------------l---------~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY 274 (561)
T COG2987 216 AETLDEALALAEEATAAGEPISIG------------L---------LGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGY 274 (561)
T ss_pred cCCHHHHHHHHHHHHhcCCceEEE------------E---------eccHHHHHHHHHHcCCCCceecccccccCcccCc
Confidence 456778887777777776544321 1 4467777788877787777665 23355566
Q ss_pred HcCC
Q 048764 112 ASKK 115 (295)
Q Consensus 112 ~~~g 115 (295)
+-.|
T Consensus 275 ~P~G 278 (561)
T COG2987 275 LPVG 278 (561)
T ss_pred CCCc
Confidence 6555
No 322
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.58 E-value=1.9e+02 Score=22.01 Aligned_cols=39 Identities=10% Similarity=0.093 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDW 203 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~ 203 (295)
++|+.+.+....++|+++++-|...| ..++..+.-|..-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSI 104 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 67888888999999999999999887 5555555555433
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=36.13 E-value=34 Score=18.48 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 048764 30 LQSCTKSKDLATAISLYESALSL 52 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~ 52 (295)
-..+.+.|+.++|..+|+++.+.
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 34566789999999999998764
No 324
>PRK13342 recombination factor protein RarA; Reviewed
Probab=35.62 E-value=3.7e+02 Score=25.08 Aligned_cols=98 Identities=14% Similarity=0.002 Sum_probs=54.2
Q ss_pred HHHHHHHHHc---CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHH-hhcHHHHHHHHHHHHhcCCHHHHH
Q 048764 104 VTSVARLAAS---KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQK-AYEEQEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 104 y~~li~~~~~---~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~-A~~e~~y~~ll~~~~~~g~~~~a~ 179 (295)
+-.+|+++.+ .++++.|+..+..|. ..|..|..+.--.++.++-..|..+- |.. --.+..+++-+.|..+.-.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l-~~G~d~~~i~rrl~~~a~edig~a~~~~~~--~~~~~~~~~~~~g~pe~~~ 306 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARML-EAGEDPLFIARRLVIIASEDIGLADPNALQ--VAVAAADAVERIGMPEGRI 306 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHhhcccCHHHHH--HHHHHHHHHHHhCCcHHHH
Confidence 4445555555 478999999999999 99988987776666666655554331 110 1233344455555554433
Q ss_pred HHHHHHHHcccCC-ChhHHHHHHHHH
Q 048764 180 QYLQKLRSTVRCV-NEETGKIIEDWF 204 (295)
Q Consensus 180 ~ll~~m~~~~~~p-~~~t~~~l~~~~ 204 (295)
-+.+-..-.-..| +.+.|..+....
T Consensus 307 ~l~~~~~~l~~~pksn~~~~a~~~a~ 332 (413)
T PRK13342 307 ALAQAVIYLALAPKSNAAYTAINAAL 332 (413)
T ss_pred HHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 3333333333333 334444444433
No 325
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.54 E-value=4.7e+02 Score=26.19 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=63.5
Q ss_pred HHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 83 RHGFRVFDQ-MLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 83 ~~a~~lf~~-M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
++....+.. +.+.|+..+......+++ ...|++..|+.++++.. .+| -..+|...+-..+.... +..
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~i-a~~--~~~It~~~V~~~Lg~~~-------~~~ 253 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAI-AFG--SGQLQEAAVRQMLGSVD-------RSH 253 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHH-Hhc--CCCcCHHHHHHHHcCCC-------HHH
Confidence 344444443 345788888877777776 45689999999998877 555 23456555544432221 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
...|++++.. |+...++.++++|...|..|..
T Consensus 254 i~~LldaL~~-~d~~~al~~l~~l~~~G~~~~~ 285 (618)
T PRK14951 254 VFRLIDALAQ-GDGRTVVETADELRLNGLSAAS 285 (618)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 4556666654 7788888888888887766543
No 326
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=35.44 E-value=2e+02 Score=21.79 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
..++|..|.+-+...+. -.+++--+-+..+-..|+++.|+..=. ....||...|-+|-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~-----~~~~pdL~p~~AL~a 79 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQ-----CHCYPDLEPWAALCA 79 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHT-----TS--GGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcc-----cCCCccHHHHHHHHH
Confidence 48899999999988655 344444455556778999999933322 234799988766543
No 327
>COG3313 Predicted Fe-S protein [General function prediction only]
Probab=35.24 E-value=32 Score=23.85 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=28.9
Q ss_pred EeeeeeCCCCCcCcCCCeeeEe----eCChHHHHHHHHHHHHH
Q 048764 243 VKRGSVDESGKCCSCGNQLACV----DIDDAETERFAQSVAAL 281 (295)
Q Consensus 243 ~~~~~v~~~g~C~~c~~~l~~~----~l~~~e~~~~~~~i~~~ 281 (295)
+..+.+|..++|-+|+..+.-| -++++|+......+-+.
T Consensus 11 v~vCs~D~~~~C~GC~Rt~~Ei~~W~~msd~Er~aVl~~l~qr 53 (74)
T COG3313 11 VGVCSTDEKDFCRGCGRTRDEIFNWSSMSDDERRAVLRLLPQR 53 (74)
T ss_pred eeeeeecCccccccccccHHHHHHHhhCCHHHHHHHHHHhHHH
Confidence 4457788888999999975433 47888888877766544
No 328
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=35.21 E-value=2.8e+02 Score=27.01 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHH-HhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHH----------
Q 048764 38 DLATAISLYESA-LSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTS---------- 106 (295)
Q Consensus 38 ~~~~A~~lf~~m-~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~---------- 106 (295)
+.++-...++.. .++|+..+...+..+.+. +.|. +.++..++++....|- +.+++..
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~-a~Gs---------~RDalslLDq~i~~~~--~~It~~~v~~~lG~~~~ 246 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIARA-AEGS---------LRDALSLLDQAIAFGE--GEITLESVRDMLGLTDI 246 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHH-cCCC---------hhhHHHHHHHHHHccC--CcccHHHHHHHhCCCCH
Confidence 344555555544 477888888877776664 3343 7789999999887642 2222222
Q ss_pred -----HHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 107 -----VARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 107 -----li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
++.+ ...+|...++..++++. ..|..|....
T Consensus 247 ~~~~~~~~~-i~~~d~~~~~~~~~~l~-~~G~~~~~~l 282 (515)
T COG2812 247 EKLLSLLEA-ILKGDAKEALRLINELI-EEGKDPEAFL 282 (515)
T ss_pred HHHHHHHHH-HHccCHHHHHHHHHHHH-HhCcCHHHHH
Confidence 2222 23679999999999999 9998776543
No 329
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=35.14 E-value=1.4e+02 Score=19.87 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-----CCCHHHHHHHH
Q 048764 62 NALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS-----KKDSDYAFELI 124 (295)
Q Consensus 62 ~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~-----~g~~~~A~~l~ 124 (295)
...+.++..+. +=+|-++++++-..--.|....|-.||...+. .|+.+.|..++
T Consensus 4 ~~~~~l~n~g~---------f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 4 EEGIELFNAGD---------FFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHTT----------HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHcCCC---------HHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 33445555565 88999999999764444577778888876553 78888887764
No 330
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.99 E-value=4.2e+02 Score=25.53 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=60.2
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhc
Q 048764 93 LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGT 172 (295)
Q Consensus 93 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~ 172 (295)
...|+..+......++.. ..|++..|..+++... .++ ...+|...+-..+...... ..-.|+++. ..
T Consensus 192 k~egi~id~~al~~La~~--s~G~lr~al~~Ldkl~-~~~--~~~It~~~V~~~lg~~~~~-------~vf~Li~ai-~~ 258 (486)
T PRK14953 192 NEEKIEYEEKALDLLAQA--SEGGMRDAASLLDQAS-TYG--EGKVTIKVVEEFLGIVSQE-------SVRKFLNLL-LE 258 (486)
T ss_pred HHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH-Hhc--CCCcCHHHHHHHhCCCCHH-------HHHHHHHHH-HC
Confidence 345777766666666653 4478888888888876 554 3345655555443332221 134566655 55
Q ss_pred CCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
|+.+.|..++++|...|..|..- ...|..+|
T Consensus 259 ~d~~~al~~l~~L~~~g~~~~~i-L~~L~~~~ 289 (486)
T PRK14953 259 SDVDEAIKFLRTLEEKGYNLNKF-WKQLEEEI 289 (486)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 88999999999998877666533 33344444
No 331
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.67 E-value=39 Score=25.97 Aligned_cols=33 Identities=21% Similarity=0.563 Sum_probs=26.4
Q ss_pred CCCCcCcCCCee---------------eEeeCChHHHHHHHHHHHHHH
Q 048764 250 ESGKCCSCGNQL---------------ACVDIDDAETERFAQSVAALA 282 (295)
Q Consensus 250 ~~g~C~~c~~~l---------------~~~~l~~~e~~~~~~~i~~~~ 282 (295)
....|..||..+ +.-+|+++|.++|...+..|.
T Consensus 67 ~psfchncgs~fpwterkiaga~elvea~~~l~pdevqqf~tdlt~lt 114 (160)
T COG4306 67 PPSFCHNCGSRFPWTERKIAGAVELVEAGENLNPDEVQQFRTDLTDLT 114 (160)
T ss_pred CcchhhcCCCCCCcHHHHHhHHHHHHHccccCCHHHHHHHHhhHHHHh
Confidence 346899999864 245799999999999997765
No 332
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=34.22 E-value=81 Score=17.02 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS 51 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~ 51 (295)
.|..+=..|.+.|++++|+..|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355566778899999999999998865
No 333
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=34.15 E-value=83 Score=17.10 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS 51 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~ 51 (295)
+|..+=..|.+.|++++|+..|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666778899999999999998764
No 334
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=34.11 E-value=33 Score=32.81 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=38.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHH
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL----VTSVARLA 111 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t----y~~li~~~ 111 (295)
..++++|+...++.++.+.+.++. - +-.|.++|.++.++|+.||.+| .-..+.+|
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SIg------------~---------~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY 265 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISIG------------L---------LGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGY 265 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEE------------e---------eccHHHHHHHHHHcCCCCCCcCCCCcccCccccc
Confidence 356777777777777766544321 1 4456777777777777777665 22234455
Q ss_pred HcCC-CHHHHHH
Q 048764 112 ASKK-DSDYAFE 122 (295)
Q Consensus 112 ~~~g-~~~~A~~ 122 (295)
+-.| .++++.+
T Consensus 266 ~P~g~t~ee~~~ 277 (545)
T TIGR01228 266 IPEGYTVEDADK 277 (545)
T ss_pred CCCCCCHHHHHH
Confidence 5555 3444443
No 335
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.00 E-value=4.7e+02 Score=25.81 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=60.1
Q ss_pred HHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHH
Q 048764 85 GFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEIT 163 (295)
Q Consensus 85 a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~ 163 (295)
....+... .+.|+..+......++... .|++..|+..++.+. .++ -..+|...+-..+...++ ....
T Consensus 184 l~~~L~~~a~~egl~i~~eal~~La~~s--~Gdlr~al~~LekL~-~y~--~~~It~e~V~~ll~~s~~-------~~vf 251 (585)
T PRK14950 184 MAAHLRKIAAAEGINLEPGALEAIARAA--TGSMRDAENLLQQLA-TTY--GGEISLSQVQSLLGISGD-------EEVK 251 (585)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH-Hhc--CCCCCHHHHHHHhcCCCH-------HHHH
Confidence 33333433 3457766666666665533 478889988888877 543 233555444444433332 2245
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
.|++++ ..|+...++.++.+|...|..|..
T Consensus 252 ~Lidal-~~~d~~~al~~l~~L~~~g~~~~~ 281 (585)
T PRK14950 252 ALAEAL-LAKDLKAALRTLNAVAADGADLRQ 281 (585)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 677776 458899999999999888775543
No 336
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.62 E-value=65 Score=20.88 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=27.2
Q ss_pred cccceEEeeeeeCCCCCcCcCCCeeeEeeCChHHHHHHHHH
Q 048764 237 GQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQS 277 (295)
Q Consensus 237 ~~~~w~~~~~~v~~~g~C~~c~~~l~~~~l~~~e~~~~~~~ 277 (295)
++..|.+.+.-.|.--+|..||... =+.-.++++=+..
T Consensus 20 g~NrwkIiRvGaDIkikC~nC~h~v---m~pR~~Ferklkk 57 (60)
T COG4481 20 GTNRWKIIRVGADIKIKCENCGHSV---MMPRYDFERKLKK 57 (60)
T ss_pred ccceEEEEEecCcEEEEecCCCcEE---EecHHHHHHHHHH
Confidence 4578999988888889999999754 3444555554443
No 337
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=33.60 E-value=3.3e+02 Score=23.83 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=86.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CCCCH------HhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHH---HHhCCCCCC
Q 048764 33 CTKSKDLATAISLYESALSLN--FRLSL------HHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQ---MLSNNVIPN 100 (295)
Q Consensus 33 ~~~~g~~~~A~~lf~~m~~~g--~~pd~------~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~---M~~~g~~pd 100 (295)
..+.||++.|..+|.+....- ..|+. ..||.=..++.+. ..+.+.+- +++|.++++. |.. ..|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~w--L~~a~~~l~~~~~~~~--~~~~ 78 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKW--LQRAYDILEKPGKMDK--LSPD 78 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHH--HHHHHHHHHhhhhccc--cCCc
Confidence 356899999999999887543 23332 3445445555555 31111111 4556666644 332 2333
Q ss_pred H-----HHHHHHHHHHHcCCCH---HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HH
Q 048764 101 E-----ALVTSVARLAASKKDS---DYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQ 160 (295)
Q Consensus 101 ~-----~ty~~li~~~~~~g~~---~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~ 160 (295)
. .++..++++|-..+.. ++|..+++.+....|=.| .+|-.-|..+-+.++.+.+.+ +.
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~ 156 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSES 156 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcccccc
Confidence 3 4667788888877765 457777778763344333 345455666666555555444 33
Q ss_pred HHHHHHHHHHh--cCCHHHHHHHHHHHHHcccCCChh
Q 048764 161 EITALLKVSAG--TGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 161 ~y~~ll~~~~~--~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.+..++..+.. ......|...+..+...-+.|++.
T Consensus 157 ~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 157 NFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred hHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 35555555421 122345566666666555566554
No 338
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.31 E-value=5.1e+02 Score=25.94 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=53.4
Q ss_pred HHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHcC
Q 048764 48 SALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-------------IPNEALVTSVARLAASK 114 (295)
Q Consensus 48 ~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-------------~pd~~ty~~li~~~~~~ 114 (295)
.+.+.|+..+......|+.. +.++ +..++.++++....|- .++......|+.++..
T Consensus 195 i~~~egi~ie~~AL~~La~~-s~Gs---------lR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~- 263 (618)
T PRK14951 195 VLAAENVPAEPQALRLLARA-ARGS---------MRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ- 263 (618)
T ss_pred HHHHcCCCCCHHHHHHHHHH-cCCC---------HHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-
Confidence 34567888777777766663 2344 7788888776554331 1445555666776665
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCc
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
|+...++.++++|. ..|..|..
T Consensus 264 ~d~~~al~~l~~l~-~~G~~~~~ 285 (618)
T PRK14951 264 GDGRTVVETADELR-LNGLSAAS 285 (618)
T ss_pred CCHHHHHHHHHHHH-HcCCCHHH
Confidence 78999999999999 88877653
No 339
>PRK05414 urocanate hydratase; Provisional
Probab=32.79 E-value=36 Score=32.70 Aligned_cols=66 Identities=20% Similarity=0.154 Sum_probs=38.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHH
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV----TSVARLA 111 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty----~~li~~~ 111 (295)
..++++|+...++.++.+-+.++. - +-.|.++|.++.++|+.||.+|= -..+.+|
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~SIg------------~---------~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY 274 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPLSIG------------L---------LGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGY 274 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCceEEE------------E---------eccHHHHHHHHHHcCCCCCccCcCccccCccccc
Confidence 356777777777777766544321 1 44577777777777777776651 1223356
Q ss_pred HcCC-CHHHHHH
Q 048764 112 ASKK-DSDYAFE 122 (295)
Q Consensus 112 ~~~g-~~~~A~~ 122 (295)
+-.| .++++.+
T Consensus 275 ~P~G~t~ee~~~ 286 (556)
T PRK05414 275 LPVGWTLEEAAE 286 (556)
T ss_pred CCCCCCHHHHHH
Confidence 5555 3444443
No 340
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=32.41 E-value=1.4e+02 Score=20.84 Aligned_cols=49 Identities=18% Similarity=0.123 Sum_probs=31.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc
Q 048764 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSN 70 (295)
Q Consensus 20 ~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~ 70 (295)
.+|......++..|.+ +++.++...+.++...|+.++ ...+.|......
T Consensus 2 ~p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~ 50 (89)
T PF08542_consen 2 WPPPEVIEEILESCLN-GDFKEARKKLYELLVEGYSAS-DILKQLHEVLVE 50 (89)
T ss_dssp S--HHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT--HH-HHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHH
Confidence 3556666677776655 599999999999998898775 344455553333
No 341
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=32.32 E-value=77 Score=22.21 Aligned_cols=49 Identities=8% Similarity=0.193 Sum_probs=34.2
Q ss_pred CCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 56 LSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 56 pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
|.......++..|..+. +.++...+.++...|++++ ...+.|.+.....
T Consensus 3 p~~~~i~~i~~~~~~~~---------~~~~~~~~~~l~~~G~s~~-~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGD---------FKEARKKLYELLVEGYSAS-DILKQLHEVLVES 51 (89)
T ss_dssp --HHHHHHHHHHHHHTC---------HHHHHHHHHHHHHTT--HH-HHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHh
Confidence 34455667888887777 9999999999999888655 5566666666665
No 342
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=31.70 E-value=4.1e+02 Score=24.39 Aligned_cols=94 Identities=9% Similarity=0.077 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESA----LSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP 99 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m----~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p 99 (295)
.+-..-.-||+-||-+.|+..+..- ..-|.+.|++-|..=|. .+...+. +.+-.+.-+.|.+.|.--
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~l--------V~~~iekak~liE~GgDW 177 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDL--------VTESIEKAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHH--------HHHHHHHHHHHHHhCCCh
Confidence 5556667899999999999887654 35688899888877777 3344332 555555566666666532
Q ss_pred ----CHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 100 ----NEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 100 ----d~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
-..+|-.|-..-. .++.+|-.+|-+..
T Consensus 178 eRrNRlKvY~Gly~msv--R~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 178 ERRNRLKVYQGLYCMSV--RNFKEAADLFLDSV 208 (393)
T ss_pred hhhhhHHHHHHHHHHHH--HhHHHHHHHHHHHc
Confidence 2356666554433 47888888887765
No 343
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=31.57 E-value=39 Score=21.95 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=15.1
Q ss_pred CCcCcCCCeeeEeeCCh
Q 048764 252 GKCCSCGNQLACVDIDD 268 (295)
Q Consensus 252 g~C~~c~~~l~~~~l~~ 268 (295)
-.|+.||..|..+.+++
T Consensus 23 V~Cp~CGaeleVv~~~p 39 (54)
T TIGR01206 23 VICDECGAELEVVSLDP 39 (54)
T ss_pred EeCCCCCCEEEEEeCCC
Confidence 48999999999998887
No 344
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.49 E-value=5e+02 Score=25.31 Aligned_cols=45 Identities=7% Similarity=-0.004 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+.|..+.-+|...|+.....|....+- .-+++++.-.++.++..
T Consensus 314 ~k~~~~~~~dll~aGvDTTs~tl~~~Ly--~LarnP~~Q~~L~~Ei~ 358 (519)
T KOG0159|consen 314 RKDAKANVMDLLAAGVDTTSNTLLWALY--ELARNPEVQQRLREEIL 358 (519)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHH--HHhcChHHHHHHHHHHH
Confidence 7889999999999998666665555554 44557777777888876
No 345
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=31.15 E-value=4.1e+02 Score=26.94 Aligned_cols=87 Identities=9% Similarity=0.128 Sum_probs=55.1
Q ss_pred cCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CCCCCC---HHHHHHHHHHHHcCCCHHHHHHHH
Q 048764 52 LNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NNVIPN---EALVTSVARLAASKKDSDYAFELI 124 (295)
Q Consensus 52 ~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g~~pd---~~ty~~li~~~~~~g~~~~A~~l~ 124 (295)
.|.+.|+..|-.||..|-....++. -++++.++++-|+. -||.+. ...-..+.+-|+..|+.+......
T Consensus 211 dgyplN~~LYe~LL~~~FD~~de~~----vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~ 286 (677)
T PF05664_consen 211 DGYPLNVRLYEKLLFSVFDILDEGQ----VIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAI 286 (677)
T ss_pred cCCCccHHHHHHHHHHHhcccccch----HHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4889999999999997766543331 15777777777655 577543 333446788999999877655444
Q ss_pred HHhhh---hcCCCCCcccHHH
Q 048764 125 KRMNN---EFNVVPRLRTYDP 142 (295)
Q Consensus 125 ~~M~~---~~gi~P~~~ty~~ 142 (295)
..+.+ ...-.+....|..
T Consensus 287 ~~L~ev~~d~~~~~~~~~y~~ 307 (677)
T PF05664_consen 287 QQLQEVAKDAKRATKDPLYLK 307 (677)
T ss_pred HHHHHHHHhccccccchhhhh
Confidence 44432 2222355555544
No 346
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=30.17 E-value=4.9e+02 Score=24.82 Aligned_cols=70 Identities=16% Similarity=0.147 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 82 LRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
-++|.++++.-+. +.|+ ...-+.+...|...|..+.+..+++.-. -..||..-.+.|-+.+.-.+...+|
T Consensus 420 rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L---~~~~D~~LH~~Lgd~~~A~Ne~Q~a 490 (564)
T KOG1174|consen 420 REKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL---IIFPDVNLHNHLGDIMRAQNEPQKA 490 (564)
T ss_pred HHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHH---hhccccHHHHHHHHHHHHhhhHHHH
Confidence 3445555444332 2233 2334444455555555555555555533 2345555544444444444444333
No 347
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.12 E-value=4.4e+02 Score=24.26 Aligned_cols=93 Identities=17% Similarity=0.069 Sum_probs=63.2
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCCHHhHHHHHH--HH-HcCCCCCCcchHHHHHHHHHHHH
Q 048764 18 TNPNPETNFLISLQSCTKSKDLATAISLYESALSL---NFRLSLHHFNALLY--LC-SNSATDPSLKDSALRHGFRVFDQ 91 (295)
Q Consensus 18 ~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~---g~~pd~~ty~~ll~--~~-~~~~~~~~~~~~~~~~a~~lf~~ 91 (295)
.++.|-+.--.++...-+.+|.++|++.++++.+. --.||.+.|-..-- .+ -.++ +.++.+++++
T Consensus 70 ~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~D---------Lk~~kk~ldd 140 (380)
T KOG2908|consen 70 TKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEIND---------LKEIKKLLDD 140 (380)
T ss_pred hccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc---------HHHHHHHHHH
Confidence 34555555566677777788999999999999854 24567777655433 22 2333 8999999998
Q ss_pred HHh-----CCCCCCHHH-HHHHHHHHHc-CCCHHH
Q 048764 92 MLS-----NNVIPNEAL-VTSVARLAAS-KKDSDY 119 (295)
Q Consensus 92 M~~-----~g~~pd~~t-y~~li~~~~~-~g~~~~ 119 (295)
.++ -|++|++.+ |..+=.-|-+ .|++..
T Consensus 141 ~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 141 LKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHH
Confidence 877 788887654 6666665554 455443
No 348
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.85 E-value=6.5e+02 Score=26.11 Aligned_cols=84 Identities=12% Similarity=0.119 Sum_probs=51.6
Q ss_pred HHHHHHHHH-HhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC---C----------CCCHHHHHH
Q 048764 41 TAISLYESA-LSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN---V----------IPNEALVTS 106 (295)
Q Consensus 41 ~A~~lf~~m-~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g---~----------~pd~~ty~~ 106 (295)
+....+... ..+|+..+......|.+.+ .|+ +.+|+.++++....+ + .+|...+..
T Consensus 182 eIv~~L~~Il~~EgI~id~eAL~lIA~~A-~Gs---------mRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ 251 (830)
T PRK07003 182 HIVSHLERILGEERIAFEPQALRLLARAA-QGS---------MRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVR 251 (830)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCC---------HHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHH
Confidence 334444443 3456666666665555543 333 778888877654422 1 244445566
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 107 VARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
|+.++.. ++...++.++++|. ..|+.+.
T Consensus 252 ll~aL~~-~d~~~~l~~~~~l~-~~g~~~~ 279 (830)
T PRK07003 252 LLDALAA-GDGPEILAVADEMA-LRSLSFS 279 (830)
T ss_pred HHHHHHc-CCHHHHHHHHHHHH-HhCCCHH
Confidence 6665544 88999999999999 8887554
No 349
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=29.52 E-value=10 Score=24.21 Aligned_cols=23 Identities=13% Similarity=0.084 Sum_probs=16.7
Q ss_pred CCHHHHHHHHHHHHhcC-CCCCHH
Q 048764 37 KDLATAISLYESALSLN-FRLSLH 59 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g-~~pd~~ 59 (295)
=|++.|+..|.+++..| |||+.+
T Consensus 27 Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 27 WDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp T-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred CCHHHHHHHHHHHHHcCCCChHhc
Confidence 46889999999998776 677643
No 350
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.44 E-value=5.7e+02 Score=25.45 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh---CCCCCCHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS---NNVIPNEALVTSV 107 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~---~g~~pd~~ty~~l 107 (295)
....-.|+++.|+..+-. ..+...|.+++...|+.+.--... .... ..+.. .+.+| .-+.-|
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~--------~~~~---~~lls~~~~~~~~--ln~arL 330 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVS--------DSSS---APLLSVDPGDPPP--LNFARL 330 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT-------------------------------------HHHH
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCC--------Cccc---cceeeecCCCCCC--cCHHHH
Confidence 334447889999998876 456788999999999965543310 0111 33322 12222 668899
Q ss_pred HHHHHc---CCCHHHHHHHHHHhh
Q 048764 108 ARLAAS---KKDSDYAFELIKRMN 128 (295)
Q Consensus 108 i~~~~~---~g~~~~A~~l~~~M~ 128 (295)
|..|++ ..|+.+|+++|--+.
T Consensus 331 I~~Y~~~F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 331 IGQYTRSFEITDPREALQYLYLIC 354 (613)
T ss_dssp HHHHHHTTTTT-HHHHHHHHHGGG
T ss_pred HHHHHHHHhccCHHHHHHHHHHHH
Confidence 999997 578999999998887
No 351
>PLN02789 farnesyltranstransferase
Probab=29.19 E-value=4.3e+02 Score=23.84 Aligned_cols=45 Identities=9% Similarity=0.035 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 83 RHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 83 ~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+++..+++.|.+... -|..+|+..--++.+.|+++++++.++++.
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445566656555332 355666666666666666666666666666
No 352
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.18 E-value=3e+02 Score=25.00 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=21.4
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 44 SLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 44 ~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
++|..|...++.|.-++|.-+.-+.++.-. +.+...+++.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~--------lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFP--------LPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCC--------chhHHHHHHHHhc
Confidence 445555555555555555544444444332 4555555555544
No 353
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=29.09 E-value=2.1e+02 Score=20.25 Aligned_cols=61 Identities=16% Similarity=0.193 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHH
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~ 154 (295)
...|+..+.+.|| .|-...-..-+.....+.|..+++... ..| ...|....+++...|.-.
T Consensus 18 ~~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~-~RG----~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 18 PKYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLE-TRG----KQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHH-hcC----HHHHHHHHHHHHhcCchH
Confidence 4457777777776 222222233345566788888888887 555 446777777776666544
No 354
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=29.03 E-value=4.8e+02 Score=24.30 Aligned_cols=66 Identities=11% Similarity=0.026 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNN---VIPNEALVTSVARLAAS---KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g---~~pd~~ty~~li~~~~~---~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
++...++.+.|..-- +.-....---..-++-+ .|+.++|++++.... ...-.++..||..+-..|-
T Consensus 157 ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l-~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 157 YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVL-ESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-hccCCCChHHHHHHHHHHH
Confidence 999999999998731 11111111123334455 899999999999965 4444667778777666553
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=28.87 E-value=1.8e+02 Score=20.57 Aligned_cols=42 Identities=2% Similarity=-0.011 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHcCCCHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVI-PN-EALVTSVARLAASKKDSDYAFEL 123 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~-pd-~~ty~~li~~~~~~g~~~~A~~l 123 (295)
-+.|+.++...++.-.. |+ -.++..|+.+|+..|++.+++++
T Consensus 22 ~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 22 TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777776653322 22 23566778888888877776543
No 356
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=28.58 E-value=2.3e+02 Score=20.45 Aligned_cols=66 Identities=18% Similarity=0.124 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 84 HGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
.+.++++.+.+.|+ .+..-.+.+..+-...|+.+.|.++++... . .|+ -|...++++...|.-+-|
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~--r--g~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV--Q--KEG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc--c--CCc--HHHHHHHHHHHcCchhhh
Confidence 47788999999886 344444444444447799999999999886 2 354 678888888888775544
No 357
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=28.05 E-value=2.7e+02 Score=21.08 Aligned_cols=90 Identities=8% Similarity=-0.033 Sum_probs=61.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 35 KSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
.....++|..+.+-+...+..-.+++.--++++..+++ +++|+. . ......||...|-+|-. .+.
T Consensus 18 G~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~---------Yq~ALl--~--~~~~~~pdL~p~~AL~a--~kl 82 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGD---------YQEALL--L--PQCHCYPDLEPWAALCA--WKL 82 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT----------HHHHHH--H--HTTS--GGGHHHHHHHH--HHC
T ss_pred hhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHH---------HHHHHH--h--cccCCCccHHHHHHHHH--Hhh
Confidence 34568999999999998877666666666666777777 999921 1 22345699999887754 578
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHH
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYD 141 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~ 141 (295)
|-.+++...+..+. .+| .|....|.
T Consensus 83 GL~~~~e~~l~rla-~~g-~~~~q~Fa 107 (116)
T PF09477_consen 83 GLASALESRLTRLA-SSG-SPELQAFA 107 (116)
T ss_dssp T-HHHHHHHHHHHC-T-S-SHHHHHHH
T ss_pred ccHHHHHHHHHHHH-hCC-CHHHHHHH
Confidence 88899999998888 666 56555554
No 358
>PHA02743 Viral ankyrin protein; Provisional
Probab=28.05 E-value=2.9e+02 Score=21.92 Aligned_cols=85 Identities=11% Similarity=0.020 Sum_probs=45.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH---
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLS---LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL--- 103 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t--- 103 (295)
+.-.++.|++....+++..+.+.|..++ ..-.+.|..++..+.. +...+.+-+.+.|..+|...
T Consensus 24 l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~----------~~~~~i~~Ll~~Gadin~~d~~~ 93 (166)
T PHA02743 24 FLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRA----------NAVMKIELLVNMGADINARELGT 93 (166)
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCcc----------CHHHHHHHHHHcCCCCCCCCCCC
Confidence 3335577888888888777776665433 2223444445555431 23344455556676666432
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELI 124 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~ 124 (295)
-.+.+...+..|+.+.+.-++
T Consensus 94 g~TpLh~A~~~g~~~iv~~Ll 114 (166)
T PHA02743 94 GNTLLHIAASTKNYELAEWLC 114 (166)
T ss_pred CCcHHHHHHHhCCHHHHHHHH
Confidence 234444445667765544443
No 359
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.83 E-value=1.8e+02 Score=19.51 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=35.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH
Q 048764 21 NPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY 66 (295)
Q Consensus 21 ~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~ 66 (295)
+++..++-++..+++..-+++++.++.++...|. .+..+|---++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR 50 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVR 50 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Confidence 4455899999999999999999999999999985 34555555544
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.56 E-value=4.5e+02 Score=23.53 Aligned_cols=106 Identities=13% Similarity=0.126 Sum_probs=69.0
Q ss_pred HHHHHHHHHHh-cC-CHHHHHHHHHHHH-hcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC-CCCCC
Q 048764 25 NFLISLQSCTK-SK-DLATAISLYESAL-SLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN-NVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~-~g-~~~~A~~lf~~m~-~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~-g~~pd 100 (295)
.-..+|..... .+ .+..-.++.+-+. ..|-.++..+..++|...+..+. +..-+++++.-... +..-|
T Consensus 166 vislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~d--------W~kl~~fW~~~~~~~~~~~D 237 (292)
T PF13929_consen 166 VISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRD--------WNKLFQFWEQCIPNSVPGND 237 (292)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhccc--------HHHHHHHHHHhcccCCCCCC
Confidence 44444444444 22 2233334444444 33567888888899994444442 99999888877654 56678
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH-----hhhhcCCCCCccc
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKR-----MNNEFNVVPRLRT 139 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~-----M~~~~gi~P~~~t 139 (295)
..-|...|+....+||..-...++++ .+ +.|+.-+...
T Consensus 238 ~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwik-R~~V~v~~~L 280 (292)
T PF13929_consen 238 PRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIK-RNNVDVTDEL 280 (292)
T ss_pred CchHHHHHHHHHHcCCHHHHHHHhhCCCeEEee-ecCCcCCHHH
Confidence 99999999999999998877777764 33 4555444333
No 361
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.28 E-value=1.7e+02 Score=18.68 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=26.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 167 KVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
-++.+.|++++|..+.+.+.+ ..|+......|...+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHHHH
Confidence 357799999999999999877 478777776665544
No 362
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.07 E-value=26 Score=18.76 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=8.8
Q ss_pred CCCCcCcCCCee
Q 048764 250 ESGKCCSCGNQL 261 (295)
Q Consensus 250 ~~g~C~~c~~~l 261 (295)
..-.|+.||..|
T Consensus 15 ~~~fC~~CG~~L 26 (26)
T PF13248_consen 15 DAKFCPNCGAKL 26 (26)
T ss_pred ccccChhhCCCC
Confidence 457888888765
No 363
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=26.30 E-value=2.9e+02 Score=20.86 Aligned_cols=62 Identities=16% Similarity=0.113 Sum_probs=45.0
Q ss_pred CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC------------------CCCHHHHHHHHHHHHcCCC
Q 048764 55 RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV------------------IPNEALVTSVARLAASKKD 116 (295)
Q Consensus 55 ~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~------------------~pd~~ty~~li~~~~~~g~ 116 (295)
.|..+|..-|-..+..+. ..|..++..|.+.|. .+-...+...+.-+...|+
T Consensus 16 ~~~~vtl~elA~~l~cS~----------Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~ 85 (115)
T PF12793_consen 16 QPVEVTLDELAELLFCSR----------RNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGK 85 (115)
T ss_pred CCcceeHHHHHHHhCCCH----------HHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCC
Confidence 445566666666444443 379999999999883 2335566777788889999
Q ss_pred HHHHHHHHHH
Q 048764 117 SDYAFELIKR 126 (295)
Q Consensus 117 ~~~A~~l~~~ 126 (295)
++.|+++++.
T Consensus 86 ~~~a~~ll~~ 95 (115)
T PF12793_consen 86 YEQALQLLDF 95 (115)
T ss_pred HHHHHHHHHh
Confidence 9999999884
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=25.63 E-value=4.1e+02 Score=24.05 Aligned_cols=54 Identities=15% Similarity=0.085 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+++..-+.|..+|.+.+|.++.+... ... ..+...|-.|+..+...||--.+..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~l-tld-pL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRAL-TLD-PLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHh-hcC-hhhhHHHHHHHHHHHHhccchhhhh
Confidence 44455556666666666666666655 433 3344445566666666666443333
No 365
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.27 E-value=6.3e+02 Score=24.44 Aligned_cols=77 Identities=8% Similarity=0.046 Sum_probs=47.9
Q ss_pred hcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHHcCCCH
Q 048764 51 SLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN---V----------IPNEALVTSVARLAASKKDS 117 (295)
Q Consensus 51 ~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g---~----------~pd~~ty~~li~~~~~~g~~ 117 (295)
..|+..+......+... +.|+ +..|+.++++....+ + .++...+..++++....+..
T Consensus 195 ~Egi~~e~eAL~~Ia~~-S~Gd---------~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~ 264 (484)
T PRK14956 195 IENVQYDQEGLFWIAKK-GDGS---------VRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNH 264 (484)
T ss_pred HcCCCCCHHHHHHHHHH-cCCh---------HHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcH
Confidence 45666666655444432 3344 667777776654311 1 13444556677766666666
Q ss_pred HHHHHHHHHhhhhcCCCCCcc
Q 048764 118 DYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ 138 (295)
..|+.+++.|. ..|..|...
T Consensus 265 ~~al~~l~~l~-~~G~d~~~~ 284 (484)
T PRK14956 265 SKSLEILESLY-QEGQDIYKF 284 (484)
T ss_pred HHHHHHHHHHH-HcCCCHHHH
Confidence 78999999999 999877654
No 366
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.68 E-value=5.4e+02 Score=26.94 Aligned_cols=120 Identities=8% Similarity=0.081 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHhHHHHHHHHHcCCCC--CC-------cchHHHHHHHHHHHH-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN---FRLSLHHFNALLYLCSNSATD--PS-------LKDSALRHGFRVFDQ- 91 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g---~~pd~~ty~~ll~~~~~~~~~--~~-------~~~~~~~~a~~lf~~- 91 (295)
-|..||..|...|+.++|+.+|.+..+.- ...-..-+--++.+......+ +. .-....+.+.+||..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 68999999999999999999999987632 111112222355554443321 00 000013445555554
Q ss_pred --HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC
Q 048764 92 --MLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENL 151 (295)
Q Consensus 92 --M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g 151 (295)
-....+.|+ .+-.|......+.+..+++.+. ...=.++..-.+.++.-|+..=
T Consensus 586 ~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li-~~~~~~~~~lht~ll~ly~e~v 640 (877)
T KOG2063|consen 586 DKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLI-SDNRLTSTLLHTVLLKLYLEKV 640 (877)
T ss_pred ChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHh-HhccccchHHHHHHHHHHHHHH
Confidence 111233333 2234556677888999999998 6555678888888888887643
No 367
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=24.41 E-value=2.1e+02 Score=23.34 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
...+.......+.+......+-+.+.....|+..+|..++..+...|+.++|
T Consensus 112 ~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA 163 (193)
T PF11846_consen 112 AALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEA 163 (193)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3434444456666666655555553345568877755555444444444333
No 368
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=24.25 E-value=6.7e+02 Score=24.39 Aligned_cols=103 Identities=10% Similarity=0.070 Sum_probs=63.6
Q ss_pred HHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCCcccHHHHHHHHHhcCCHHHhhcH
Q 048764 82 LRHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTYDPALFCFCENLEAQKAYEE 159 (295)
Q Consensus 82 ~~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~ty~~ll~~~~~~g~~~~A~~e 159 (295)
.++....+... .+.|+..+......++.. ..|++..|+.+++... .++- ....+|...+-..+.... +
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai-~~~~~~~~~It~~~V~~llg~~~-------~ 258 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAA-SMSAKSDNIISPQVINQMLGLVD-------S 258 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH-HhhccCCCCcCHHHHHHHHCCCC-------H
Confidence 34444444443 346777777766666653 4688888988888876 4332 223455544444332222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 160 QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 160 ~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
...-.|+++..+ |+..+|+.+++++...|..|...
T Consensus 259 ~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~~ 293 (507)
T PRK06645 259 SVIIEFVEYIIH-RETEKAINLINKLYGSSVNLEIF 293 (507)
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHH
Confidence 224566666644 88999999999999888777543
No 369
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.19 E-value=4.8e+02 Score=28.20 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=12.7
Q ss_pred ChHHHHHHHHHHHHHHH
Q 048764 267 DDAETERFAQSVAALAM 283 (295)
Q Consensus 267 ~~~e~~~~~~~i~~~~~ 283 (295)
++=|.+.|+++|.+++.
T Consensus 1162 ~~yEd~aLl~~L~~~~~ 1178 (1265)
T KOG1920|consen 1162 GPYEDEALLNALSEIAR 1178 (1265)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 45577888888887773
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=24.06 E-value=4.2e+02 Score=24.38 Aligned_cols=42 Identities=7% Similarity=-0.010 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH---hHHHHHHHHHcCC
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLH---HFNALLYLCSNSA 72 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~---ty~~ll~~~~~~~ 72 (295)
.+.|+.+++.|+.+- .+.+.+.|..|+.. ..+.|..++..+.
T Consensus 36 ~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 36 ISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred CCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 344555566666543 33344455544432 2233333544444
No 371
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.64 E-value=4.5e+02 Score=23.25 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=11.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 048764 29 SLQSCTKSKDLATAISLYESAL 50 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~ 50 (295)
.|......|++..|+.+..+..
T Consensus 133 ~l~~ll~~~dy~~Al~li~~~~ 154 (291)
T PF10475_consen 133 RLQELLEEGDYPGALDLIEECQ 154 (291)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3444455555555555555444
No 372
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.33 E-value=4.2e+02 Score=26.93 Aligned_cols=79 Identities=8% Similarity=0.048 Sum_probs=53.8
Q ss_pred HHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHcCCCHHHH--HHHHHHhhhhcCCCCCcc
Q 048764 63 ALLYLCSNSATDPSLKDSALRHGFRVFDQMLS--NNVIPNEALVTSVARLAASKKDSDYA--FELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 63 ~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~--~g~~pd~~ty~~li~~~~~~g~~~~A--~~l~~~M~~~~gi~P~~~ 138 (295)
+|+.+|...++ +.++..+++.... .|-+.=.-.||.-|+...+.|.++.- .+-..+.....-+.-|..
T Consensus 33 sl~eacv~n~~--------~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~ 104 (1117)
T COG5108 33 SLFEACVYNGD--------FLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSL 104 (1117)
T ss_pred HHHHHHHhcch--------HHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcch
Confidence 78888888774 8999999998865 44444456788889999999976432 111122211344667889
Q ss_pred cHHHHHHHHHh
Q 048764 139 TYDPALFCFCE 149 (295)
Q Consensus 139 ty~~ll~~~~~ 149 (295)
||..|+++-..
T Consensus 105 t~all~~~sln 115 (1117)
T COG5108 105 TYALLCQASLN 115 (1117)
T ss_pred HHHHHHHhhcC
Confidence 99988876443
No 373
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=23.29 E-value=69 Score=20.88 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=15.3
Q ss_pred CCCcCcCCCeeeEeeCChHHHHHHHHHH
Q 048764 251 SGKCCSCGNQLACVDIDDAETERFAQSV 278 (295)
Q Consensus 251 ~g~C~~c~~~l~~~~l~~~e~~~~~~~i 278 (295)
.|.|+.| ++|||..+..+..
T Consensus 38 G~IC~~C--------itpEE~~~I~e~~ 57 (60)
T PF10892_consen 38 GGICGDC--------ITPEEDREILEAT 57 (60)
T ss_pred cchhhcc--------CCHHHHHHHHHHH
Confidence 4678888 8999988877653
No 374
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.09 E-value=7.6e+02 Score=24.64 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=56.7
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhc
Q 048764 93 LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGT 172 (295)
Q Consensus 93 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~ 172 (295)
.+.|+..+......++... .|++..|...++... .+. .+.+|+..+...+.. .+. ..|-.|+++.. .
T Consensus 194 ~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~-~y~--~~~It~~~V~~~l~~-~~~------~~iF~L~dai~-~ 260 (614)
T PRK14971 194 SKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVV-SFT--GGNITYKSVIENLNI-LDY------DYYFRLTDALL-A 260 (614)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH-Hhc--cCCccHHHHHHHhCC-CCH------HHHHHHHHHHH-c
Confidence 3468877776666666543 589999999998876 432 112666555444322 222 22556666654 4
Q ss_pred CCHHHHHHHHHHHHHcccCCC
Q 048764 173 GRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~ 193 (295)
++..+|+.++..|...|..|.
T Consensus 261 ~~~~~al~ll~~Ll~~g~~~~ 281 (614)
T PRK14971 261 GKVSDSLLLFDEILNKGFDGS 281 (614)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 688899999999988777665
No 375
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.07 E-value=3.3e+02 Score=21.96 Aligned_cols=60 Identities=20% Similarity=0.117 Sum_probs=31.4
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHH
Q 048764 93 LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 93 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~ 154 (295)
.+.|+.++..=. +++..+....+.-.|.++++.+. +.+..++..|---.|..+...|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCEE
Confidence 344554443322 22222223344456666666666 6665566666555566666666554
No 376
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.05 E-value=3e+02 Score=19.86 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=38.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 87 RVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 87 ~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
++|+--...|+..|-..|-+++...-..=-++..+++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 888888889999999999999999988888999999999997
No 377
>PRK09857 putative transposase; Provisional
Probab=22.68 E-value=4.2e+02 Score=23.56 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 048764 37 KDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK 115 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g 115 (295)
.++.+-+..+..+...+..++ ..+..+++ .+..++ .++..++++.+.+. +++.....-++..-+-+.|
T Consensus 186 ~dl~~~~~~l~~ll~~~~~~~-~~~~~ll~Yi~~~~~---------~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG 254 (292)
T PRK09857 186 RDLMGLVEQMACLLSSGYAND-RQIKGLFNYILQTGD---------AVRFNDFIDGVAER-SPKHKESLMTIAERLRQEG 254 (292)
T ss_pred HhHHHHHHHHHHHHHhccCCH-HHHHHHHHHHhhccc---------cchHHHHHHHHHHh-CccccHHHHHHHHHHHHHH
Confidence 344444444444444443333 33567777 444444 44566666666554 3233333334445555566
Q ss_pred CHHHHHHHHHHhhhhcCCCCCc
Q 048764 116 DSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
.-+++.++...|. ..|+.++.
T Consensus 255 ~qe~~~~ia~~ml-~~g~~~~~ 275 (292)
T PRK09857 255 EQSKALHIAKIML-ESGVPLAD 275 (292)
T ss_pred HHHHHHHHHHHHH-HcCCCHHH
Confidence 6677888899998 88887663
No 378
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=22.64 E-value=47 Score=20.09 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=14.6
Q ss_pred CCcCcCCCeeeEeeCChHHHH
Q 048764 252 GKCCSCGNQLACVDIDDAETE 272 (295)
Q Consensus 252 g~C~~c~~~l~~~~l~~~e~~ 272 (295)
-.|+.||+....-+.+|+...
T Consensus 14 ~~C~~CgM~Y~~~~~eD~~~H 34 (41)
T PF13878_consen 14 TTCPTCGMLYSPGSPEDEKLH 34 (41)
T ss_pred cCCCCCCCEECCCCHHHHHHH
Confidence 489999998866655444443
No 379
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.51 E-value=6.4e+02 Score=23.54 Aligned_cols=48 Identities=6% Similarity=0.039 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHc--CCCHHHHHHHHHHhh
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVA----RLAAS--KKDSDYAFELIKRMN 128 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li----~~~~~--~g~~~~A~~l~~~M~ 128 (295)
++..|.++|+++.....+|+...+-..+ .+|-. .-+.++|.+.++.+.
T Consensus 145 dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~ 198 (380)
T TIGR02710 145 DYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPL 198 (380)
T ss_pred ChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhcc
Confidence 3999999999999987766666544433 44443 567889999998765
No 380
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=22.25 E-value=4.5e+02 Score=21.64 Aligned_cols=137 Identities=12% Similarity=0.094 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFR-L-SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~-p-d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
-|..-.. +.+.|++.+|...|+++....-. | -....-.+.. .+..++ ++.|...|+...+.-..-..
T Consensus 8 lY~~a~~-~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~---------y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 8 LYQKALE-ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD---------YEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHH-HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHCCCCcc
Confidence 5555555 56789999999999999865311 1 1122222333 444454 99999999998773322112
Q ss_pred HHHHHHHHHHHcC-------------CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----------
Q 048764 102 ALVTSVARLAASK-------------KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 102 ~ty~~li~~~~~~-------------g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
.-+--.+.|.+.. +....|+..|+... .-|=.+.-..+|..
T Consensus 78 ~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li----------------~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 78 ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI----------------KRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH----------------HH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHH----------------HHCcCchHHHHHHHHHHHHHHHHH
Confidence 3344334443321 11234455555444 33333333444433
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+.++ .+-+.|.+.|.+..|..-++.+.+.
T Consensus 142 ~~e~-~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 142 EHEL-YIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHH-HHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 2222 2556688999999999999888775
No 381
>PF06221 zf-C2HC5: Putative zinc finger motif, C2HC5-type; InterPro: IPR009349 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc finger appears to be common in activating signal cointegrator 1/thyroid receptor interacting protein 4. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.05 E-value=77 Score=20.84 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=16.8
Q ss_pred CCCcCcCCCeeeEeeCChHHHHHHHH
Q 048764 251 SGKCCSCGNQLACVDIDDAETERFAQ 276 (295)
Q Consensus 251 ~g~C~~c~~~l~~~~l~~~e~~~~~~ 276 (295)
.|-|+.||..| ++.++++.+..
T Consensus 35 ~~pC~fCg~~l----~~~~~~~~l~~ 56 (57)
T PF06221_consen 35 LGPCPFCGTPL----LSSEERQELIR 56 (57)
T ss_pred cCcCCCCCCcc----cCHHHHHHHhh
Confidence 58999999888 56777776653
No 382
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=21.90 E-value=5.5e+02 Score=26.72 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=46.8
Q ss_pred HhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC-C---C----------CCCHHHHHHHHHHHHcCC
Q 048764 50 LSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN-N---V----------IPNEALVTSVARLAASKK 115 (295)
Q Consensus 50 ~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~-g---~----------~pd~~ty~~li~~~~~~g 115 (295)
.+.|+..+...+..|+..+. ++ +..++.+++++... + + ..+......||++.. .+
T Consensus 193 ~~EGv~id~eal~lLa~~sg-Gd---------lR~Al~eLEKLia~~~~~~IT~e~V~allg~~~~~~I~~lidAL~-~~ 261 (824)
T PRK07764 193 AQEGVPVEPGVLPLVIRAGG-GS---------VRDSLSVLDQLLAGAGPEGVTYERAVALLGVTDSALIDEAVDALA-AG 261 (824)
T ss_pred HHcCCCCCHHHHHHHHHHcC-CC---------HHHHHHHHHHHHhhcCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH-cC
Confidence 45677766666665555432 23 67777777776531 1 1 122333445666665 57
Q ss_pred CHHHHHHHHHHhhhhcCCCCC
Q 048764 116 DSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~ 136 (295)
+...++.++++|. ..|..|.
T Consensus 262 D~a~al~~l~~Li-~~G~dp~ 281 (824)
T PRK07764 262 DGAALFGTVDRVI-EAGHDPR 281 (824)
T ss_pred CHHHHHHHHHHHH-HcCCCHH
Confidence 8899999999999 8887654
No 383
>PF11201 DUF2982: Protein of unknown function (DUF2982); InterPro: IPR021367 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.84 E-value=82 Score=25.23 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=35.8
Q ss_pred ccceEEeeeeeCCCCCcCcC----CCeeeEeeCChHHHHHHHHHH
Q 048764 238 QGKWVVKRGSVDESGKCCSC----GNQLACVDIDDAETERFAQSV 278 (295)
Q Consensus 238 ~~~w~~~~~~v~~~g~C~~c----~~~l~~~~l~~~e~~~~~~~i 278 (295)
.|.|.+.+.+|..-|.|..- ...|..|.+.=.+...|+++|
T Consensus 15 ~G~w~i~W~Ni~ri~ip~v~~~~~~~~Lp~IGiKLkdy~~~L~~I 59 (152)
T PF11201_consen 15 RGGWVIPWQNIQRIDIPRVEQGLWHQPLPYIGIKLKDYDPFLDSI 59 (152)
T ss_pred CccEEeecccceeeCCCcccCCccccccceeeEEecChHHHHhhc
Confidence 46899999999888888765 567899999999999999999
No 384
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=21.73 E-value=77 Score=24.91 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=24.4
Q ss_pred CChHHHHHHHHHHHHHHHhHHHh-hccCcC
Q 048764 266 IDDAETERFAQSVAALAMEQEVK-ANFSES 294 (295)
Q Consensus 266 l~~~e~~~~~~~i~~~~~~~~~~-~~~~~f 294 (295)
+|+.|++.+...|..++..|..| .||.++
T Consensus 23 ~~~~e~~kli~~i~~lIs~R~~ke~N~~e~ 52 (152)
T COG5030 23 VSDPEQAKLIADIYELISARKPKESNFIEG 52 (152)
T ss_pred CCcHHHHHHHHHHHHHHHcCCchhcccccc
Confidence 68889999999999999888666 777665
No 385
>PRK13342 recombination factor protein RarA; Reviewed
Probab=21.70 E-value=6.6e+02 Score=23.40 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHh---CCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC-CHHHh
Q 048764 82 LRHGFRVFDQMLS---NNV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENL-EAQKA 156 (295)
Q Consensus 82 ~~~a~~lf~~M~~---~g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g-~~~~A 156 (295)
.++...++..... .|+ ..+......++..+ .|++..++.+++... ..+ ..++...+-....... ..+.
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~-~~~---~~It~~~v~~~~~~~~~~~d~- 225 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAA-LGV---DSITLELLEEALQKRAARYDK- 225 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH-Hcc---CCCCHHHHHHHHhhhhhccCC-
Confidence 4566666666543 254 56666666666643 799999999999876 442 2344444443332210 0000
Q ss_pred hcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 157 YEEQEITALLKVSA---GTGRVEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 157 ~~e~~y~~ll~~~~---~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
....+..++.++. +..+.+.|...+.+|.+.|..|......++
T Consensus 226 -~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~ 271 (413)
T PRK13342 226 -DGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLV 271 (413)
T ss_pred -CccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 0111333333333 468899999999999998877765554443
No 386
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=21.69 E-value=1.2e+02 Score=14.84 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS 51 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~ 51 (295)
.|..+-..+...++++.|...|.+..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456667778889999999999987764
No 387
>PLN03025 replication factor C subunit; Provisional
Probab=21.26 E-value=5.9e+02 Score=22.67 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC------------CCCCCHHHHHHH
Q 048764 40 ATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN------------NVIPNEALVTSV 107 (295)
Q Consensus 40 ~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~------------g~~pd~~ty~~l 107 (295)
+-...+-..+.++|+..+......++..+. ++ +..+...++..... .-.|.......+
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~-gD---------lR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~ 231 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTAD-GD---------MRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNI 231 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CC---------HHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHH
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 108 ARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
++.... ++++.|+..+.+|. ..|..|
T Consensus 232 i~~~~~-~~~~~a~~~l~~ll-~~g~~~ 257 (319)
T PLN03025 232 VRNCLK-GKFDDACDGLKQLY-DLGYSP 257 (319)
T ss_pred HHHHHc-CCHHHHHHHHHHHH-HcCCCH
No 388
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=21.23 E-value=4.2e+02 Score=21.00 Aligned_cols=88 Identities=17% Similarity=0.100 Sum_probs=40.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHH-
Q 048764 32 SCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS-NNVIPNEALVTSVAR- 109 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~-~g~~pd~~ty~~li~- 109 (295)
+.+..|+++.|++.|.+...- .+-....||.--..+.-.+. .++|+.=+++-++ .|-+--...-.-+-+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~--------~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGD--------DEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCC--------hHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 345566666666666665533 12344556655554443332 4455554444444 332211111111111
Q ss_pred -HHHcCCCHHHHHHHHHHhh
Q 048764 110 -LAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 110 -~~~~~g~~~~A~~l~~~M~ 128 (295)
.|-..|+-|.|..=|+.-.
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAA 142 (175)
T ss_pred HHHHHhCchHHHHHhHHHHH
Confidence 2233555555555555444
No 389
>PRK15331 chaperone protein SicA; Provisional
Probab=21.19 E-value=4.6e+02 Score=21.34 Aligned_cols=99 Identities=6% Similarity=0.003 Sum_probs=61.8
Q ss_pred CCCcHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 19 NPNPET---NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 19 ~~~p~~---t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
+.+++. .|..--. +-..|++++|..+|..+.--+ |-..-|-.=|.+|.+... .++.|...|...-.-
T Consensus 31 gis~~~le~iY~~Ay~-~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k-------~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 31 GIPQDMMDGLYAHAYE-FYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKK-------QFQKACDLYAVAFTL 100 (165)
T ss_pred CCCHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHc
Confidence 445544 5555544 556799999999999877533 222335433444544331 499999999876443
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 96 NVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 96 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+. -|-..+=-+-..|-..|+.+.|...|..-.
T Consensus 101 ~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 101 LK-NDYRPVFFTGQCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred cc-CCCCccchHHHHHHHhCCHHHHHHHHHHHH
Confidence 22 111122233456667899999999999887
No 390
>COG3825 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.02 E-value=3.1e+02 Score=24.91 Aligned_cols=60 Identities=10% Similarity=0.180 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 43 ISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 43 ~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
+.+|.+++...++.+...|-.|+.+..+.- .+.-.+.|..+.+.-+.||+..+--.-.++
T Consensus 3 ~~ff~~lr~A~vpvs~re~llL~egl~~~v---------~~~~ld~Fy~LaraaLvkde~~ldkfd~~f 62 (393)
T COG3825 3 ICFFNELRAARVPVSVREYLLLLEGLKQTV---------VEYDLDLFYYLARAALVKDERHLDKFDQAF 62 (393)
T ss_pred hHHHhHhhhcccccccchHHHHHHHHhhhh---------hhhhhHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 357888888889999999999988777665 444577788877777778877766544433
No 391
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=21.00 E-value=1e+02 Score=23.68 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHH
Q 048764 35 KSKDLATAISLYESALSLNFRLSLHHFNA 63 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ 63 (295)
=.|+...|.++++.++.+|+.|-...|..
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 36899999999999999999998776653
No 392
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=20.92 E-value=1.9e+02 Score=22.49 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=30.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC
Q 048764 20 PNPETNFLISLQSCTKSKDLATAISLYESALSLNFR-LS 57 (295)
Q Consensus 20 ~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~-pd 57 (295)
..++..+.++|--+.-.|+++.|+.+.+-+.++|.+ |+
T Consensus 45 g~qd~Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~P~ 83 (132)
T PF05944_consen 45 GAQDDVLMTVMVWLFDVGDFDGALDIAEYAIEHGLPMPD 83 (132)
T ss_pred CCcCchHHhhHhhhhcccCHHHHHHHHHHHHHcCCCccc
Confidence 345557777777888999999999999999999954 44
No 393
>PF13005 zf-IS66: zinc-finger binding domain of transposase IS66 ; InterPro: IPR024474 This entry represents a predicted helix-turn-helix domain from insertion element IS66 transposases [].
Probab=20.89 E-value=72 Score=19.49 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=11.7
Q ss_pred CCCcCcCCCeeeEee
Q 048764 251 SGKCCSCGNQLACVD 265 (295)
Q Consensus 251 ~g~C~~c~~~l~~~~ 265 (295)
...|+.||..|..|.
T Consensus 2 ~~~C~~Cg~~l~~ig 16 (47)
T PF13005_consen 2 PRACPDCGGELKEIG 16 (47)
T ss_pred CCcCCCCCceeeECC
Confidence 467999999998544
No 394
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=20.78 E-value=91 Score=18.60 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=14.7
Q ss_pred CcCcCCCeeeEeeCChHHHHHHHH
Q 048764 253 KCCSCGNQLACVDIDDAETERFAQ 276 (295)
Q Consensus 253 ~C~~c~~~l~~~~l~~~e~~~~~~ 276 (295)
.|++|+... |+..|.+++.+
T Consensus 21 ~C~~C~G~W----~d~~el~~~~e 40 (41)
T PF13453_consen 21 VCPSCGGIW----FDAGELEKLLE 40 (41)
T ss_pred ECCCCCeEE----ccHHHHHHHHh
Confidence 588887766 67788777654
No 395
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.46 E-value=1.8e+02 Score=19.71 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAAS 113 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~ 113 (295)
.+.+.+++++..+.|.+|..+..+.++-+.-.
T Consensus 17 ~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~ 48 (79)
T PF02607_consen 17 EEEAEALLEEALAQGYPPEDIIEEILMPAMEE 48 (79)
T ss_dssp CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34555555555555555554444444444333
No 396
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=20.41 E-value=69 Score=20.88 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 118 DYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
....++|+.|. ...-.|..+.||-.|.-
T Consensus 9 ~~lI~vFK~~p-Sr~YD~~Tr~W~F~L~D 36 (55)
T PF07443_consen 9 EELIAVFKQMP-SRNYDPKTRKWNFSLED 36 (55)
T ss_pred HHHHHHHHcCc-ccccCccceeeeeeHHH
Confidence 45566777776 66666777766666654
No 397
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.27 E-value=9.3e+02 Score=24.55 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=65.6
Q ss_pred HHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQM-LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M-~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
.++..+.+... .+.|+..+......+++. ..|++..|+.++++.. .+| ...+|+..+...+..... .
T Consensus 179 ~eEI~k~L~~Il~kEgI~id~eAL~~IA~~--S~GdLRdALnLLDQaI-ayg--~g~IT~edV~~lLG~~d~-------e 246 (702)
T PRK14960 179 VDEITKHLGAILEKEQIAADQDAIWQIAES--AQGSLRDALSLTDQAI-AYG--QGAVHHQDVKEMLGLIDR-------T 246 (702)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH-Hhc--CCCcCHHHHHHHhccCCH-------H
Confidence 34444445444 346887777777777654 4689999999998877 665 455777766665442222 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
.+-.|++++.+ ++...++.+++++...|..++.
T Consensus 247 ~IfdLldAI~k-~d~~~al~~L~el~~~g~d~~~ 279 (702)
T PRK14960 247 IIYDLILAVHQ-NQREKVSQLLLQFRYQALDVSL 279 (702)
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHHhCCCHHH
Confidence 24556666544 6778888888888887766553
No 398
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=20.13 E-value=93 Score=24.34 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=31.1
Q ss_pred CCcCcCCCeeeEee-CChHHHHHHHHHHHHHHHhHHHhhcc
Q 048764 252 GKCCSCGNQLACVD-IDDAETERFAQSVAALAMEQEVKANF 291 (295)
Q Consensus 252 g~C~~c~~~l~~~~-l~~~e~~~~~~~i~~~~~~~~~~~~~ 291 (295)
.+|.+|+..-+-.. -.|-.=+.|+++|..|+.+.+.+..|
T Consensus 21 fVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~ 61 (143)
T COG5469 21 FVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEF 61 (143)
T ss_pred EEeccccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccc
Confidence 46888877665553 56667799999999999998887665
No 399
>PHA02874 ankyrin repeat protein; Provisional
Probab=20.03 E-value=5.7e+02 Score=23.74 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=6.3
Q ss_pred HHHHHHhcCCHHHH
Q 048764 29 SLQSCTKSKDLATA 42 (295)
Q Consensus 29 li~~~~~~g~~~~A 42 (295)
.|...++.|+.+-+
T Consensus 38 pL~~A~~~g~~~iv 51 (434)
T PHA02874 38 PLIDAIRSGDAKIV 51 (434)
T ss_pred HHHHHHHcCCHHHH
Confidence 33344445555444
Done!