Query 048764
Match_columns 295
No_of_seqs 274 out of 2211
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 22:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.1E-56 2.8E-60 421.2 28.5 292 3-295 6-314 (501)
2 4g26_A Pentatricopeptide repea 99.9 5.2E-27 1.8E-31 223.0 18.5 149 15-172 52-223 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 7.1E-23 2.4E-27 202.9 10.6 124 25-158 129-257 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 1.2E-18 4E-23 173.0 12.2 113 56-200 125-242 (1134)
5 2xpi_A Anaphase-promoting comp 99.5 2.5E-12 8.7E-17 122.6 19.9 170 25-205 307-527 (597)
6 2xpi_A Anaphase-promoting comp 99.4 4.6E-12 1.6E-16 120.8 19.5 185 24-225 374-579 (597)
7 2y4t_A DNAJ homolog subfamily 98.9 8.6E-08 3E-12 87.7 20.1 166 25-204 28-221 (450)
8 2vq2_A PILW, putative fimbrial 98.9 6.5E-07 2.2E-11 73.3 22.3 169 25-204 10-192 (225)
9 1w3b_A UDP-N-acetylglucosamine 98.9 4E-07 1.4E-11 81.9 21.1 166 25-204 171-349 (388)
10 2ho1_A Type 4 fimbrial biogene 98.8 2.5E-07 8.6E-12 77.8 18.2 168 25-204 39-219 (252)
11 3mkr_A Coatomer subunit epsilo 98.8 7.7E-07 2.6E-11 77.9 21.3 166 20-204 61-244 (291)
12 2ho1_A Type 4 fimbrial biogene 98.8 4.7E-07 1.6E-11 76.1 19.3 158 25-195 73-243 (252)
13 1w3b_A UDP-N-acetylglucosamine 98.8 2.2E-07 7.4E-12 83.7 17.9 156 25-194 205-372 (388)
14 2y4t_A DNAJ homolog subfamily 98.8 4.4E-07 1.5E-11 82.9 18.5 157 24-195 61-245 (450)
15 3as5_A MAMA; tetratricopeptide 98.7 1.1E-06 3.7E-11 69.5 17.5 152 25-188 10-173 (186)
16 2q7f_A YRRB protein; TPR, prot 98.7 6.6E-07 2.3E-11 74.4 16.9 167 25-204 25-203 (243)
17 2vq2_A PILW, putative fimbrial 98.7 2.9E-06 1E-10 69.3 20.6 161 24-197 43-218 (225)
18 2q7f_A YRRB protein; TPR, prot 98.7 1.9E-06 6.6E-11 71.5 18.3 152 25-188 59-222 (243)
19 1b89_A Protein (clathrin heavy 98.6 1.3E-08 4.4E-13 94.1 3.9 151 24-204 33-187 (449)
20 1fch_A Peroxisomal targeting s 98.6 8.4E-06 2.9E-10 72.1 21.4 161 25-188 100-314 (368)
21 3mkr_A Coatomer subunit epsilo 98.6 3.9E-06 1.3E-10 73.4 18.6 185 19-227 27-231 (291)
22 4eqf_A PEX5-related protein; a 98.6 1.5E-06 5E-11 77.4 16.2 166 25-204 101-291 (365)
23 4eqf_A PEX5-related protein; a 98.6 4.7E-06 1.6E-10 74.1 19.3 166 25-204 67-257 (365)
24 2fo7_A Synthetic consensus TPR 98.6 2.6E-06 8.9E-11 63.3 15.0 127 25-187 3-131 (136)
25 3uq3_A Heat shock protein STI1 98.6 3.9E-06 1.3E-10 70.1 17.7 167 25-204 7-217 (258)
26 3hym_B Cell division cycle pro 98.6 1.1E-05 3.8E-10 69.9 20.2 104 82-188 107-222 (330)
27 1fch_A Peroxisomal targeting s 98.5 2E-05 6.9E-10 69.6 21.9 167 25-204 66-295 (368)
28 3cv0_A Peroxisome targeting si 98.5 1.7E-05 5.9E-10 68.6 21.0 161 25-189 57-270 (327)
29 3nf1_A KLC 1, kinesin light ch 98.5 3.5E-06 1.2E-10 72.4 15.7 161 18-187 20-223 (311)
30 1b89_A Protein (clathrin heavy 98.5 2.3E-07 8E-12 85.7 8.3 144 25-186 63-234 (449)
31 3hym_B Cell division cycle pro 98.5 2.2E-05 7.4E-10 68.0 20.1 152 25-187 127-298 (330)
32 3uq3_A Heat shock protein STI1 98.4 8.2E-06 2.8E-10 68.1 15.8 155 24-188 39-236 (258)
33 3vtx_A MAMA; tetratricopeptide 98.4 5.1E-05 1.7E-09 60.5 19.5 151 25-187 7-169 (184)
34 2gw1_A Mitochondrial precursor 98.4 6.5E-05 2.2E-09 69.3 22.8 96 25-132 8-103 (514)
35 2pl2_A Hypothetical conserved 98.4 8.1E-06 2.8E-10 67.8 14.9 156 25-185 41-211 (217)
36 1xnf_A Lipoprotein NLPI; TPR, 98.4 6.3E-05 2.2E-09 63.4 20.3 121 25-158 45-165 (275)
37 2pl2_A Hypothetical conserved 98.4 3.1E-05 1.1E-09 64.2 17.3 165 25-204 7-195 (217)
38 3cv0_A Peroxisome targeting si 98.3 0.00015 5E-09 62.6 21.9 167 25-204 23-250 (327)
39 3ieg_A DNAJ homolog subfamily 98.3 9.7E-05 3.3E-09 64.4 20.4 165 25-204 5-198 (359)
40 2gw1_A Mitochondrial precursor 98.3 1.5E-05 5.3E-10 73.6 15.4 151 25-188 239-401 (514)
41 3ieg_A DNAJ homolog subfamily 98.3 6.5E-05 2.2E-09 65.5 18.7 151 25-188 39-217 (359)
42 2fo7_A Synthetic consensus TPR 98.3 3.1E-05 1.1E-09 57.3 14.3 96 82-204 17-113 (136)
43 1xnf_A Lipoprotein NLPI; TPR, 98.3 3.3E-05 1.1E-09 65.2 15.5 143 35-188 17-173 (275)
44 4gyw_A UDP-N-acetylglucosamine 98.2 5.3E-05 1.8E-09 74.7 18.8 154 21-187 5-173 (723)
45 2ond_A Cleavage stimulation fa 98.2 0.0002 7E-09 62.4 20.7 168 25-204 52-251 (308)
46 1ouv_A Conserved hypothetical 98.2 0.0011 3.8E-08 56.1 24.7 146 25-188 40-215 (273)
47 3fp2_A TPR repeat-containing p 98.2 7E-05 2.4E-09 69.7 18.3 152 25-189 245-408 (537)
48 3as5_A MAMA; tetratricopeptide 98.2 7.6E-05 2.6E-09 58.5 15.4 121 25-158 44-165 (186)
49 3nf1_A KLC 1, kinesin light ch 98.2 8.4E-05 2.9E-09 63.6 16.8 125 25-158 71-216 (311)
50 2ond_A Cleavage stimulation fa 98.2 0.00013 4.6E-09 63.6 18.2 155 20-188 94-270 (308)
51 3edt_B KLC 2, kinesin light ch 98.2 5E-05 1.7E-09 63.9 14.5 125 25-158 45-190 (283)
52 3u4t_A TPR repeat-containing p 98.2 0.0004 1.4E-08 58.4 20.1 151 27-188 7-171 (272)
53 1ouv_A Conserved hypothetical 98.1 0.001 3.5E-08 56.4 22.1 159 25-204 8-192 (273)
54 3fp2_A TPR repeat-containing p 98.1 0.00016 5.4E-09 67.3 18.1 167 24-204 277-472 (537)
55 4i17_A Hypothetical protein; T 98.0 0.0011 3.8E-08 54.5 20.1 123 24-158 8-138 (228)
56 1na0_A Designed protein CTPR3; 98.0 0.00025 8.5E-09 51.6 14.4 96 25-131 11-106 (125)
57 4abn_A Tetratricopeptide repea 98.0 0.00013 4.6E-09 68.0 15.1 150 25-188 104-287 (474)
58 2ooe_A Cleavage stimulation fa 98.0 0.00047 1.6E-08 64.8 18.9 152 25-189 274-455 (530)
59 3u4t_A TPR repeat-containing p 97.9 0.00047 1.6E-08 58.0 16.2 152 25-188 39-208 (272)
60 3edt_B KLC 2, kinesin light ch 97.9 8.8E-05 3E-09 62.4 10.9 146 34-188 12-198 (283)
61 4abn_A Tetratricopeptide repea 97.8 0.00019 6.5E-09 67.0 12.2 155 25-185 139-318 (474)
62 3vtx_A MAMA; tetratricopeptide 97.8 0.0011 3.7E-08 52.5 14.8 122 25-158 41-162 (184)
63 3u3w_A Transcriptional activat 97.8 0.0013 4.5E-08 56.7 16.4 155 25-187 77-265 (293)
64 2ooe_A Cleavage stimulation fa 97.8 0.0013 4.3E-08 61.8 17.5 154 21-188 317-492 (530)
65 2vyi_A SGTA protein; chaperone 97.7 0.00082 2.8E-08 49.2 13.1 116 25-152 14-129 (131)
66 2vsy_A XCC0866; transferase, g 97.7 0.00087 3E-08 63.6 15.9 122 25-158 25-149 (568)
67 3qky_A Outer membrane assembly 97.7 0.0047 1.6E-07 51.9 19.0 156 25-195 17-229 (261)
68 3urz_A Uncharacterized protein 97.7 0.0016 5.5E-08 53.3 15.4 157 30-202 11-198 (208)
69 3mv2_B Coatomer subunit epsilo 97.7 0.0022 7.5E-08 56.5 16.8 23 164-186 216-238 (310)
70 2lni_A Stress-induced-phosphop 97.7 0.0017 5.8E-08 47.8 14.1 114 25-151 18-132 (133)
71 1hh8_A P67PHOX, NCF-2, neutrop 97.7 0.0014 4.6E-08 53.1 14.3 140 25-188 8-150 (213)
72 2yhc_A BAMD, UPF0169 lipoprote 97.6 0.0088 3E-07 49.3 19.1 101 26-138 7-130 (225)
73 2h6f_A Protein farnesyltransfe 97.6 0.0024 8.2E-08 58.0 16.7 171 20-204 92-284 (382)
74 1qqe_A Vesicular transport pro 97.6 0.0013 4.4E-08 56.9 14.1 152 25-185 79-266 (292)
75 2h6f_A Protein farnesyltransfe 97.6 0.0027 9.4E-08 57.5 16.8 165 25-204 133-319 (382)
76 2qfc_A PLCR protein; TPR, HTH, 97.6 0.008 2.7E-07 51.6 19.1 154 25-186 77-264 (293)
77 1a17_A Serine/threonine protei 97.6 0.0017 5.9E-08 49.9 12.9 130 25-187 15-145 (166)
78 3gw4_A Uncharacterized protein 97.6 0.0019 6.6E-08 51.5 13.6 147 34-189 3-177 (203)
79 3ro2_A PINS homolog, G-protein 97.5 0.0024 8.1E-08 54.6 14.5 155 25-188 7-212 (338)
80 3ulq_A Response regulator aspa 97.5 0.0028 9.5E-08 56.6 15.0 155 25-187 186-367 (383)
81 1hh8_A P67PHOX, NCF-2, neutrop 97.5 0.0068 2.3E-07 48.9 16.1 77 82-187 22-99 (213)
82 4a1s_A PINS, partner of inscut 97.5 0.00065 2.2E-08 60.9 10.8 155 25-188 128-332 (411)
83 3ro2_A PINS homolog, G-protein 97.5 0.0012 4E-08 56.5 11.8 155 25-188 125-332 (338)
84 4i17_A Hypothetical protein; T 97.4 0.0052 1.8E-07 50.4 14.9 123 57-193 6-149 (228)
85 1qqe_A Vesicular transport pro 97.4 0.002 6.8E-08 55.7 12.8 154 25-187 39-227 (292)
86 4a1s_A PINS, partner of inscut 97.4 0.00092 3.2E-08 59.9 11.0 153 25-188 50-252 (411)
87 3q15_A PSP28, response regulat 97.4 0.0055 1.9E-07 54.7 15.8 154 25-187 184-364 (378)
88 1elr_A TPR2A-domain of HOP; HO 97.4 0.0029 1E-07 46.2 11.6 106 25-143 6-118 (131)
89 3qou_A Protein YBBN; thioredox 97.4 0.0032 1.1E-07 54.3 13.6 117 82-204 133-265 (287)
90 3sf4_A G-protein-signaling mod 97.4 0.0033 1.1E-07 55.7 14.0 155 25-188 11-216 (406)
91 1hz4_A MALT regulatory protein 97.3 0.01 3.4E-07 52.5 16.4 154 25-188 95-282 (373)
92 3sf4_A G-protein-signaling mod 97.3 0.0022 7.5E-08 56.8 12.0 154 25-188 129-336 (406)
93 2kck_A TPR repeat; tetratricop 97.3 0.0077 2.6E-07 42.6 12.7 97 25-132 8-107 (112)
94 1na0_A Designed protein CTPR3; 97.3 0.007 2.4E-07 43.6 12.6 98 58-188 9-106 (125)
95 1elw_A TPR1-domain of HOP; HOP 97.3 0.018 6.3E-07 40.8 14.8 99 25-137 6-105 (118)
96 3sz7_A HSC70 cochaperone (SGT) 97.2 0.012 4.1E-07 45.6 14.4 102 25-139 13-114 (164)
97 3mv2_B Coatomer subunit epsilo 97.2 0.0037 1.3E-07 55.0 12.2 120 25-157 102-231 (310)
98 4gco_A Protein STI-1; structur 97.2 0.0094 3.2E-07 44.6 13.1 106 20-138 8-115 (126)
99 4gyw_A UDP-N-acetylglucosamine 97.2 0.018 6.3E-07 56.6 18.1 134 57-204 8-155 (723)
100 2r5s_A Uncharacterized protein 97.2 0.0024 8.1E-08 50.6 9.8 120 25-158 8-129 (176)
101 2pzi_A Probable serine/threoni 97.2 0.005 1.7E-07 60.0 14.0 145 34-194 402-567 (681)
102 2ifu_A Gamma-SNAP; membrane fu 97.2 0.0037 1.3E-07 54.4 11.9 153 25-186 38-222 (307)
103 3ulq_A Response regulator aspa 97.2 0.0083 2.8E-07 53.5 14.2 152 25-185 145-332 (383)
104 2xcb_A PCRH, regulatory protei 97.2 0.0091 3.1E-07 45.3 12.6 99 20-128 13-113 (142)
105 3gyz_A Chaperone protein IPGC; 97.2 0.0094 3.2E-07 46.5 12.8 100 19-128 30-131 (151)
106 2vsy_A XCC0866; transferase, g 97.2 0.0083 2.8E-07 56.7 14.8 141 36-189 2-158 (568)
107 2dba_A Smooth muscle cell asso 97.1 0.033 1.1E-06 41.5 15.6 103 25-141 30-136 (148)
108 3rjv_A Putative SEL1 repeat pr 97.1 0.073 2.5E-06 43.3 18.9 153 25-189 20-198 (212)
109 2vgx_A Chaperone SYCD; alterna 97.1 0.019 6.6E-07 44.1 14.2 100 19-128 15-116 (148)
110 3ro3_A PINS homolog, G-protein 97.1 0.0053 1.8E-07 46.3 10.6 137 25-187 11-157 (164)
111 1p5q_A FKBP52, FK506-binding p 97.1 0.01 3.5E-07 52.5 13.8 97 25-131 149-259 (336)
112 1a17_A Serine/threonine protei 97.1 0.02 6.7E-07 43.7 13.9 80 82-187 29-109 (166)
113 1hz4_A MALT regulatory protein 97.1 0.061 2.1E-06 47.3 18.8 153 25-187 137-321 (373)
114 3upv_A Heat shock protein STI1 97.0 0.02 7E-07 42.0 13.2 94 25-128 6-99 (126)
115 1xi4_A Clathrin heavy chain; a 97.0 0.025 8.5E-07 59.1 17.3 143 25-185 1136-1306(1630)
116 2c2l_A CHIP, carboxy terminus 97.0 0.0033 1.1E-07 54.1 9.5 94 25-128 6-99 (281)
117 3q49_B STIP1 homology and U bo 97.0 0.022 7.5E-07 42.2 13.1 94 25-128 11-104 (137)
118 2e2e_A Formate-dependent nitri 96.9 0.015 5.2E-07 45.5 12.1 109 25-146 46-157 (177)
119 2r5s_A Uncharacterized protein 96.9 0.0039 1.3E-07 49.3 8.4 117 25-156 42-163 (176)
120 3q15_A PSP28, response regulat 96.9 0.016 5.4E-07 51.6 13.4 151 25-184 143-328 (378)
121 3k9i_A BH0479 protein; putativ 96.8 0.0018 6.3E-08 47.5 5.7 105 35-148 2-108 (117)
122 2lni_A Stress-induced-phosphop 96.8 0.032 1.1E-06 40.6 12.7 98 55-187 13-112 (133)
123 2e2e_A Formate-dependent nitri 96.8 0.009 3.1E-07 46.9 10.1 108 78-188 22-144 (177)
124 2pzi_A Probable serine/threoni 96.8 0.0083 2.8E-07 58.5 11.6 120 25-158 435-555 (681)
125 2vyi_A SGTA protein; chaperone 96.8 0.018 6E-07 41.7 11.0 97 58-188 12-109 (131)
126 1xi4_A Clathrin heavy chain; a 96.8 0.036 1.2E-06 57.9 16.4 140 22-185 1104-1247(1630)
127 2xm6_A Protein corresponding t 96.8 0.2 7E-06 46.1 20.3 16 172-187 236-251 (490)
128 3u3w_A Transcriptional activat 96.7 0.1 3.4E-06 44.6 16.9 105 82-187 91-224 (293)
129 1elr_A TPR2A-domain of HOP; HO 96.7 0.041 1.4E-06 39.8 12.5 95 103-201 6-119 (131)
130 4gcn_A Protein STI-1; structur 96.7 0.041 1.4E-06 41.0 12.6 38 162-201 86-123 (127)
131 4ga2_A E3 SUMO-protein ligase 96.7 0.011 3.8E-07 45.6 9.5 121 78-204 9-144 (150)
132 2xm6_A Protein corresponding t 96.7 0.24 8.3E-06 45.5 20.3 109 36-158 128-244 (490)
133 1p5q_A FKBP52, FK506-binding p 96.7 0.031 1.1E-06 49.3 13.5 118 58-186 147-292 (336)
134 3gw4_A Uncharacterized protein 96.7 0.047 1.6E-06 43.1 13.5 151 25-186 28-194 (203)
135 1elw_A TPR1-domain of HOP; HOP 96.7 0.049 1.7E-06 38.4 12.4 85 102-188 5-101 (118)
136 4ga2_A E3 SUMO-protein ligase 96.7 0.032 1.1E-06 42.9 11.9 68 82-153 47-115 (150)
137 3q49_B STIP1 homology and U bo 96.6 0.032 1.1E-06 41.3 11.5 88 99-188 7-106 (137)
138 3gyz_A Chaperone protein IPGC; 96.6 0.034 1.2E-06 43.2 11.7 91 101-195 36-138 (151)
139 3qou_A Protein YBBN; thioredox 96.6 0.0068 2.3E-07 52.2 8.3 149 25-186 119-282 (287)
140 2dba_A Smooth muscle cell asso 96.5 0.12 4.1E-06 38.2 14.4 96 57-187 27-127 (148)
141 2xev_A YBGF; tetratricopeptide 96.5 0.13 4.6E-06 37.2 14.4 96 29-139 8-111 (129)
142 2fbn_A 70 kDa peptidylprolyl i 96.5 0.055 1.9E-06 43.2 12.9 95 25-128 40-149 (198)
143 4e6h_A MRNA 3'-END-processing 96.4 0.1 3.6E-06 50.8 16.2 166 25-204 380-584 (679)
144 4b4t_Q 26S proteasome regulato 96.4 0.083 2.8E-06 47.3 14.7 155 25-187 57-244 (434)
145 2kck_A TPR repeat; tetratricop 96.4 0.02 6.7E-07 40.3 8.4 87 79-188 19-106 (112)
146 3upv_A Heat shock protein STI1 96.3 0.037 1.3E-06 40.6 10.0 82 104-187 7-100 (126)
147 2vgx_A Chaperone SYCD; alterna 96.3 0.013 4.4E-07 45.1 7.6 80 82-187 37-117 (148)
148 4gcn_A Protein STI-1; structur 96.3 0.061 2.1E-06 40.0 11.3 103 25-139 10-118 (127)
149 4gco_A Protein STI-1; structur 96.3 0.049 1.7E-06 40.5 10.7 88 103-194 15-114 (126)
150 3sz7_A HSC70 cochaperone (SGT) 96.3 0.038 1.3E-06 42.7 10.4 86 101-188 11-108 (164)
151 1kt0_A FKBP51, 51 kDa FK506-bi 96.3 0.064 2.2E-06 49.5 13.5 117 25-153 270-401 (457)
152 1wao_1 Serine/threonine protei 96.3 0.025 8.5E-07 52.7 10.7 115 31-158 14-131 (477)
153 2xcb_A PCRH, regulatory protei 96.2 0.043 1.5E-06 41.4 10.2 84 103-188 20-115 (142)
154 2qfc_A PLCR protein; TPR, HTH, 96.2 0.06 2E-06 46.0 12.3 123 26-156 118-255 (293)
155 1hxi_A PEX5, peroxisome target 96.2 0.063 2.2E-06 39.6 10.8 94 25-128 19-112 (121)
156 2fbn_A 70 kDa peptidylprolyl i 96.2 0.0061 2.1E-07 49.0 5.4 115 32-158 13-143 (198)
157 4b4t_Q 26S proteasome regulato 96.1 0.13 4.3E-06 46.1 14.5 149 31-187 12-203 (434)
158 4f3v_A ESX-1 secretion system 96.0 0.1 3.5E-06 45.1 12.5 141 23-198 102-245 (282)
159 2ifu_A Gamma-SNAP; membrane fu 96.0 0.023 7.8E-07 49.2 8.5 125 25-158 78-216 (307)
160 3qky_A Outer membrane assembly 96.0 0.31 1E-05 40.5 15.3 155 25-186 54-242 (261)
161 1ihg_A Cyclophilin 40; ppiase 96.0 0.082 2.8E-06 47.4 12.2 119 25-155 225-359 (370)
162 3n71_A Histone lysine methyltr 95.9 0.083 2.8E-06 49.4 12.3 106 82-187 325-463 (490)
163 3rjv_A Putative SEL1 repeat pr 95.7 0.64 2.2E-05 37.5 16.3 143 40-204 3-172 (212)
164 4g1t_A Interferon-induced prot 95.6 0.37 1.3E-05 43.5 15.5 156 25-194 96-280 (472)
165 3k9i_A BH0479 protein; putativ 95.6 0.0093 3.2E-07 43.6 3.7 85 80-188 4-90 (117)
166 3rkv_A Putative peptidylprolyl 95.6 0.15 5E-06 39.1 10.9 102 25-138 13-131 (162)
167 4g1t_A Interferon-induced prot 95.3 0.24 8.4E-06 44.7 13.2 104 81-188 228-363 (472)
168 2c2l_A CHIP, carboxy terminus 95.3 0.19 6.5E-06 42.8 11.4 77 78-158 16-93 (281)
169 1hxi_A PEX5, peroxisome target 95.2 0.11 3.8E-06 38.2 8.6 77 109-187 25-113 (121)
170 2yhc_A BAMD, UPF0169 lipoprote 95.1 0.61 2.1E-05 37.9 13.8 121 60-194 7-180 (225)
171 3urz_A Uncharacterized protein 95.0 0.25 8.5E-06 39.8 11.0 114 29-158 60-178 (208)
172 3e4b_A ALGK; tetratricopeptide 94.9 2.1 7.2E-05 39.0 18.4 151 25-189 178-352 (452)
173 1wao_1 Serine/threonine protei 94.8 0.063 2.1E-06 49.9 7.6 103 78-183 18-134 (477)
174 2l6j_A TPR repeat-containing p 94.8 0.062 2.1E-06 37.9 5.9 89 25-124 6-101 (111)
175 3ma5_A Tetratricopeptide repea 94.7 0.6 2E-05 32.6 11.1 83 99-186 5-88 (100)
176 3mkq_A Coatomer beta'-subunit; 94.6 0.3 1E-05 47.6 12.2 88 82-185 668-762 (814)
177 2l6j_A TPR repeat-containing p 94.5 0.15 5.1E-06 35.8 7.6 69 57-137 3-71 (111)
178 4e6h_A MRNA 3'-END-processing 94.5 0.19 6.4E-06 49.0 10.2 123 25-158 436-562 (679)
179 1kt0_A FKBP51, 51 kDa FK506-bi 94.3 0.42 1.4E-05 43.9 11.9 116 59-185 269-412 (457)
180 3mkq_B Coatomer subunit alpha; 94.2 0.46 1.6E-05 38.0 10.3 91 78-184 17-114 (177)
181 2xev_A YBGF; tetratricopeptide 94.2 1.1 3.7E-05 32.1 13.7 90 82-195 18-110 (129)
182 2kat_A Uncharacterized protein 94.2 1 3.5E-05 31.9 12.4 70 84-157 3-73 (115)
183 3ro3_A PINS homolog, G-protein 93.8 0.33 1.1E-05 35.9 8.6 86 102-188 10-118 (164)
184 2kat_A Uncharacterized protein 93.8 0.45 1.5E-05 33.9 8.9 78 41-128 3-80 (115)
185 1na3_A Designed protein CTPR2; 93.7 0.78 2.7E-05 30.5 9.7 63 82-148 25-88 (91)
186 2uy1_A Cleavage stimulation fa 93.3 1.2 4E-05 41.5 13.0 125 25-187 288-412 (493)
187 1na3_A Designed protein CTPR2; 93.2 1.2 4E-05 29.6 10.8 79 25-113 11-89 (91)
188 1klx_A Cysteine rich protein B 93.2 2 6.8E-05 32.1 12.3 112 36-189 8-127 (138)
189 3rkv_A Putative peptidylprolyl 93.1 0.47 1.6E-05 36.1 8.6 84 104-188 14-126 (162)
190 2if4_A ATFKBP42; FKBP-like, al 92.8 0.64 2.2E-05 40.7 10.0 93 25-128 181-291 (338)
191 1ihg_A Cyclophilin 40; ppiase 92.7 0.78 2.7E-05 40.9 10.5 72 82-156 239-326 (370)
192 3qwp_A SET and MYND domain-con 92.7 1.1 3.7E-05 41.0 11.6 93 27-128 291-398 (429)
193 3qww_A SET and MYND domain-con 92.7 0.62 2.1E-05 42.7 9.9 85 36-128 311-409 (433)
194 3n71_A Histone lysine methyltr 91.9 0.66 2.3E-05 43.3 9.3 103 19-129 345-463 (490)
195 3dra_A Protein farnesyltransfe 91.9 5.8 0.0002 34.3 17.7 139 37-187 124-286 (306)
196 2if4_A ATFKBP42; FKBP-like, al 91.7 0.45 1.5E-05 41.7 7.6 73 82-158 195-285 (338)
197 3qww_A SET and MYND domain-con 91.6 1.4 4.8E-05 40.3 11.0 74 113-186 310-409 (433)
198 3ly7_A Transcriptional activat 91.5 1.6 5.3E-05 39.2 10.8 147 25-204 196-353 (372)
199 3qwp_A SET and MYND domain-con 91.3 1.7 5.9E-05 39.6 11.3 80 107-186 293-398 (429)
200 3mkq_A Coatomer beta'-subunit; 91.2 3.5 0.00012 39.9 14.1 96 56-184 679-774 (814)
201 2hr2_A Hypothetical protein; a 91.1 4.5 0.00015 31.5 13.4 109 25-141 13-146 (159)
202 3ma5_A Tetratricopeptide repea 90.9 0.88 3E-05 31.7 7.2 82 57-148 6-88 (100)
203 2hr2_A Hypothetical protein; a 89.8 3.3 0.00011 32.3 10.1 88 82-187 27-130 (159)
204 3e4b_A ALGK; tetratricopeptide 89.2 12 0.00042 33.7 17.1 141 27-189 217-388 (452)
205 1klx_A Cysteine rich protein B 88.0 6.6 0.00023 29.1 12.8 61 80-149 9-69 (138)
206 2kc7_A BFR218_protein; tetratr 87.9 2.4 8.1E-05 28.8 7.5 55 31-95 8-64 (99)
207 4f3v_A ESX-1 secretion system 87.6 2.1 7.2E-05 36.8 8.3 95 30-136 142-240 (282)
208 1pc2_A Mitochondria fission pr 87.4 2.5 8.5E-05 32.8 7.7 83 39-128 14-98 (152)
209 1zu2_A Mitochondrial import re 86.6 1.2 4.1E-05 34.8 5.6 110 34-148 13-135 (158)
210 1v54_E Cytochrome C oxidase po 86.2 2.8 9.7E-05 30.1 6.8 63 82-146 26-88 (109)
211 1pc2_A Mitochondria fission pr 84.7 12 0.00041 28.9 11.5 102 77-204 9-114 (152)
212 1dce_A Protein (RAB geranylger 83.5 30 0.001 32.5 16.8 175 25-205 27-237 (567)
213 2kc7_A BFR218_protein; tetratr 81.2 9.2 0.00031 25.6 8.0 48 82-131 16-64 (99)
214 2uy1_A Cleavage stimulation fa 80.3 8.5 0.00029 35.6 9.6 144 25-185 215-380 (493)
215 2ff4_A Probable regulatory pro 80.1 7.3 0.00025 34.8 8.8 108 99-206 110-257 (388)
216 2y69_E Cytochrome C oxidase su 78.9 7.1 0.00024 29.7 6.8 63 82-146 69-131 (152)
217 4h7y_A Dual specificity protei 77.2 12 0.00041 29.0 7.9 101 25-136 15-128 (161)
218 3ly7_A Transcriptional activat 76.9 10 0.00035 33.8 8.6 74 54-141 273-347 (372)
219 4gns_B Protein CSD3, chitin bi 76.7 27 0.00091 34.3 12.1 122 27-158 252-392 (754)
220 2v5f_A Prolyl 4-hydroxylase su 75.2 14 0.00046 25.8 7.5 68 60-139 7-81 (104)
221 2ff4_A Probable regulatory pro 75.1 12 0.00042 33.3 8.8 57 82-139 187-247 (388)
222 3u64_A Protein TP_0956; tetrat 73.9 25 0.00086 30.3 9.9 112 25-142 156-282 (301)
223 3mkq_B Coatomer subunit alpha; 72.5 34 0.0011 27.0 15.4 113 31-183 13-126 (177)
224 1k1a_A B-cell lymphoma 3-encod 72.4 10 0.00036 30.2 7.1 147 28-193 11-177 (241)
225 3u64_A Protein TP_0956; tetrat 70.0 53 0.0018 28.3 13.7 117 57-200 153-283 (301)
226 1ug3_A EIF4GI, eukaryotic prot 68.1 30 0.001 30.2 9.5 146 25-184 13-166 (339)
227 3bee_A Putative YFRE protein; 66.8 28 0.00095 23.8 10.8 81 56-146 4-85 (93)
228 1nzn_A CGI-135 protein, fissio 63.4 31 0.0011 25.6 7.3 97 31-137 9-107 (126)
229 3dss_A Geranylgeranyl transfer 60.3 85 0.0029 27.2 14.7 105 25-141 110-231 (331)
230 2p58_C Putative type III secre 58.7 47 0.0016 23.8 7.5 57 82-145 23-79 (116)
231 3aji_A 26S proteasome non-ATPa 58.2 9.8 0.00033 30.3 4.2 110 28-156 8-122 (231)
232 1oai_A Nuclear RNA export fact 57.2 7.8 0.00027 24.7 2.6 24 36-59 33-57 (59)
233 2uwj_G Type III export protein 57.1 46 0.0016 23.8 6.8 57 82-145 22-78 (115)
234 4gns_B Protein CSD3, chitin bi 56.7 99 0.0034 30.3 11.5 121 59-186 249-398 (754)
235 2p58_C Putative type III secre 55.7 36 0.0012 24.4 6.0 90 35-142 19-108 (116)
236 1wdy_A 2-5A-dependent ribonucl 54.4 29 0.00099 28.1 6.6 42 27-72 6-51 (285)
237 3dra_A Protein farnesyltransfe 54.3 1E+02 0.0035 26.3 16.0 171 25-204 69-268 (306)
238 3twr_A Tankyrase-2; ankyrin re 54.1 15 0.00051 27.5 4.4 92 26-138 8-104 (165)
239 4fhn_B Nucleoporin NUP120; pro 52.9 1.6E+02 0.0056 30.0 13.1 89 103-204 940-1030(1139)
240 2v5f_A Prolyl 4-hydroxylase su 52.6 41 0.0014 23.1 6.3 78 100-197 4-82 (104)
241 1dce_A Protein (RAB geranylger 52.6 1.5E+02 0.0051 27.6 14.0 101 39-149 89-190 (567)
242 1zu2_A Mitochondrial import re 52.2 37 0.0013 26.2 6.4 110 78-204 14-134 (158)
243 1wy6_A Hypothetical protein ST 52.2 77 0.0026 24.2 9.4 51 82-134 107-157 (172)
244 2uwj_G Type III export protein 51.1 35 0.0012 24.4 5.4 89 36-142 19-107 (115)
245 1mzb_A Ferric uptake regulatio 49.4 48 0.0016 24.5 6.5 93 164-280 22-117 (136)
246 3q7a_A Farnesyltransferase alp 48.1 1.4E+02 0.0048 26.1 17.1 159 25-188 125-331 (349)
247 2xig_A Ferric uptake regulatio 47.7 57 0.002 24.6 6.8 41 163-203 30-71 (150)
248 2w57_A Ferric uptake regulatio 45.0 64 0.0022 24.3 6.7 93 164-280 21-116 (150)
249 1wy6_A Hypothetical protein ST 44.8 1E+02 0.0035 23.6 11.8 130 82-223 23-152 (172)
250 3l6a_A Eukaryotic translation 44.7 1.4E+02 0.0049 26.2 9.8 81 25-116 14-98 (364)
251 1zbp_A Hypothetical protein VP 44.0 72 0.0025 27.0 7.3 71 30-110 4-77 (273)
252 1y8m_A FIS1; mitochondria, unk 43.8 66 0.0023 24.4 6.4 54 81-137 57-110 (144)
253 1v54_E Cytochrome C oxidase po 43.7 87 0.003 22.4 8.3 78 23-109 8-87 (109)
254 2dzn_A Probable 26S proteasome 42.7 24 0.00081 27.8 4.1 44 29-72 5-48 (228)
255 2of3_A ZYG-9; multifunctional 41.4 1.6E+02 0.0054 24.7 10.1 140 46-204 115-261 (266)
256 3o48_A Mitochondria fission 1 41.0 53 0.0018 24.6 5.4 55 81-138 58-112 (134)
257 3f6q_A Integrin-linked protein 40.5 45 0.0016 25.1 5.3 91 30-138 9-101 (179)
258 3v30_A DNA-binding protein rfx 40.3 36 0.0012 25.4 4.7 90 30-138 6-98 (172)
259 2ion_A PDCD4, programmed cell 39.7 1E+02 0.0034 23.4 7.0 71 25-103 11-82 (152)
260 2rfa_A Transient receptor pote 39.6 68 0.0023 25.1 6.5 147 28-192 5-184 (232)
261 3mwm_A ZUR, putative metal upt 39.6 61 0.0021 24.1 5.7 93 164-280 18-113 (139)
262 2nsz_A Programmed cell death p 39.5 1E+02 0.0036 22.5 6.9 75 25-106 9-83 (129)
263 3hra_A Ankyrin repeat family p 38.4 53 0.0018 25.0 5.5 151 28-193 7-172 (201)
264 2o03_A Probable zinc uptake re 38.3 1.1E+02 0.0039 22.2 7.5 41 164-204 15-55 (131)
265 2dod_A Transcription elongatio 38.0 32 0.0011 23.4 3.5 34 82-116 16-50 (82)
266 1awc_B Protein (GA binding pro 37.7 81 0.0028 22.9 6.3 92 27-139 3-97 (153)
267 3dss_A Geranylgeranyl transfer 37.0 2E+02 0.007 24.8 15.6 101 39-149 90-191 (331)
268 2k5c_A Uncharacterized protein 36.9 14 0.00049 25.0 1.5 27 252-278 52-78 (95)
269 1nzn_A CGI-135 protein, fissio 36.8 1.2E+02 0.0043 22.2 10.7 97 82-204 17-117 (126)
270 3t8k_A Uncharacterized protein 33.6 79 0.0027 24.4 5.8 93 32-138 12-110 (186)
271 2zk9_X Protein-glutaminase; de 32.2 71 0.0024 25.0 4.9 47 54-100 4-61 (185)
272 2d2s_A Exocyst complex compone 31.9 2.1E+02 0.0072 23.4 8.9 90 27-128 22-118 (235)
273 3ygs_P Procaspase 9; apoptosis 31.8 1.2E+02 0.004 21.0 5.8 61 87-154 25-85 (97)
274 3v31_A Ankyrin repeat family A 31.3 1.5E+02 0.0052 21.6 7.5 90 30-138 7-98 (167)
275 1wgl_A TOLL-interacting protei 31.0 68 0.0023 20.2 3.9 48 82-137 9-58 (59)
276 2y69_E Cytochrome C oxidase su 30.7 1.7E+02 0.006 22.1 8.3 79 22-109 50-130 (152)
277 3q7a_A Farnesyltransferase alp 30.7 2.7E+02 0.0092 24.2 18.3 168 26-206 57-254 (349)
278 3ljn_A Hypothetical protein; a 30.7 45 0.0016 28.5 4.2 95 24-136 18-115 (364)
279 2y1l_E Darpin-8.4; hydrolase-i 29.8 1.2E+02 0.0042 22.3 6.2 94 22-138 10-109 (169)
280 3b7b_A Euchromatic histone-lys 29.4 44 0.0015 26.4 3.6 41 28-72 46-89 (237)
281 3ga8_A HTH-type transcriptiona 29.3 63 0.0022 21.4 3.8 28 251-282 36-63 (78)
282 1zbp_A Hypothetical protein VP 29.3 2.3E+02 0.0078 23.9 8.0 105 81-187 12-128 (273)
283 2keb_A DNA polymerase subunit 28.9 1.3E+02 0.0043 21.3 5.3 63 40-107 26-88 (101)
284 1yii_A Annexin A5, annexin V, 28.8 2.7E+02 0.0094 23.7 10.6 106 25-144 75-197 (320)
285 3utm_A Tankyrase-1; tankyrase, 28.3 64 0.0022 27.0 4.7 107 27-156 25-140 (351)
286 2zu6_B Programmed cell death p 28.3 1.1E+02 0.0037 26.3 6.1 27 25-51 5-31 (307)
287 2ion_A PDCD4, programmed cell 28.2 1.9E+02 0.0066 21.8 8.6 26 103-128 11-36 (152)
288 2etb_A Transient receptor pote 28.0 52 0.0018 26.4 3.9 43 28-70 4-53 (256)
289 3qye_A TBC1 domain family memb 27.9 2.8E+02 0.0095 23.5 9.6 48 86-134 208-255 (331)
290 1uzc_A Hypothetical protein FL 27.5 51 0.0018 21.7 3.0 32 82-114 14-46 (71)
291 3esl_A Checkpoint serine/threo 27.2 2.4E+02 0.0082 22.6 8.6 53 82-135 95-148 (202)
292 4b4t_P 26S proteasome regulato 27.2 3.4E+02 0.012 24.3 13.3 155 25-187 58-246 (445)
293 2ijq_A Hypothetical protein; s 27.1 2.1E+02 0.0073 21.9 7.1 59 61-128 36-102 (161)
294 2wpv_A GET4, UPF0363 protein Y 26.9 3E+02 0.01 23.6 13.2 115 25-158 35-155 (312)
295 2wvi_A Mitotic checkpoint seri 26.0 2.2E+02 0.0075 21.9 6.9 53 84-137 78-131 (164)
296 4a1g_A Mitotic checkpoint seri 25.6 2.2E+02 0.0076 21.6 6.8 52 83-135 82-134 (152)
297 3bee_A Putative YFRE protein; 25.5 1.6E+02 0.0053 19.8 10.6 47 39-96 25-73 (93)
298 3eiq_C Programmed cell death p 25.3 2.1E+02 0.007 25.2 7.4 76 25-107 219-294 (358)
299 3ygs_P Procaspase 9; apoptosis 24.7 1.4E+02 0.0049 20.5 5.2 39 81-123 52-90 (97)
300 3jxi_A Vanilloid receptor-rela 24.6 1E+02 0.0034 24.6 5.1 33 28-60 7-39 (260)
301 2yru_A Steroid receptor RNA ac 24.5 1.2E+02 0.004 22.1 4.8 44 85-128 45-88 (118)
302 3t8k_A Uncharacterized protein 24.3 2.2E+02 0.0074 21.7 6.9 32 106-138 40-71 (186)
303 4fhn_B Nucleoporin NUP120; pro 24.3 4.6E+02 0.016 26.7 10.9 75 103-177 901-989 (1139)
304 3lpz_A GET4 (YOR164C homolog); 24.0 3.5E+02 0.012 23.4 18.8 150 25-186 37-214 (336)
305 3eiq_C Programmed cell death p 22.4 1.9E+02 0.0066 25.3 6.7 27 25-51 56-82 (358)
306 1n00_A Annexin GH1; membrane-b 22.1 3.7E+02 0.013 22.9 8.7 92 25-128 77-185 (321)
307 3eu9_A Huntingtin-interacting 21.8 98 0.0033 24.0 4.4 14 165-178 180-193 (240)
308 3pvs_A Replication-associated 21.8 2.2E+02 0.0074 25.7 7.1 62 113-177 267-329 (447)
309 4h7y_A Dual specificity protei 21.7 1.8E+02 0.006 22.5 5.4 64 36-109 73-137 (161)
310 2b7e_A PRE-mRNA processing pro 21.3 33 0.0011 21.8 1.0 30 83-113 3-34 (59)
311 3pvs_A Replication-associated 21.1 4.5E+02 0.015 23.5 11.6 115 82-201 167-297 (447)
312 1l8d_A DNA double-strand break 21.1 64 0.0022 22.8 2.8 12 251-262 47-58 (112)
313 2rg8_A Programmed cell death p 20.2 2E+02 0.0069 22.0 5.7 71 25-105 12-83 (165)
314 2fu4_A Ferric uptake regulatio 20.1 1.9E+02 0.0063 18.7 5.4 32 84-115 35-66 (83)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.1e-56 Score=421.19 Aligned_cols=292 Identities=45% Similarity=0.787 Sum_probs=262.6
Q ss_pred CCCCCCCCChhhhhcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-CCCcchHH
Q 048764 3 NTTSANPSKPNKKRKTNPNPETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-DPSLKDSA 81 (295)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~~~~~~~~ 81 (295)
.+++..+.++.+++....+|+..++.+|++|+|.|++++|+++|++|++.|++||.+|||+||++|+..+. ....+.+.
T Consensus 6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 35667777888888888889999999999999999999999999999999999999999999999987663 34566778
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
+++|.++|++|...|+.||.+|||+||++|++.|++++|+++|++|. ..|+.||.+|||+||.+|++.|++++|.+
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhc---cccCCcccchhHHHHHHHh
Q 048764 159 ----------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSG---QKVNGVSCDLGLVKNAVLK 225 (295)
Q Consensus 159 ----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~---~~~g~~~~~~~~v~~~~~~ 225 (295)
..+|++||++|++.|++++|+++|++|++.++.|+..|+.+|+.||++ ...|...|++..+.+.+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~~~d~~~~~~~~~~ 244 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVS 244 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhhhhhhhhhhhhHhc
Confidence 445999999999999999999999999999999999999999999998 6678889999999999999
Q ss_pred cCCccccCCCccccceEEeeeeeCCCCCcCcCCCeeeEeeCChHHHHHHHHHHHHHHHhHHHhhccCcCC
Q 048764 226 NGGGWHGLGWIGQGKWVVKRGSVDESGKCCSCGNQLACVDIDDAETERFAQSVAALAMEQEVKANFSESQ 295 (295)
Q Consensus 226 ~g~~~~~~~w~~~~~w~~~~~~v~~~g~C~~c~~~l~~~~l~~~e~~~~~~~i~~~~~~~~~~~~~~~f~ 295 (295)
.|++|++++|++.++|.+..+.|+..|.|+.|+.+|.+|+|+++|++.|++.|.++|++++++.+|++||
T Consensus 245 ~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~ 314 (501)
T 4g26_A 245 GGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQ 314 (501)
T ss_dssp HTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998885
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.2e-27 Score=222.95 Aligned_cols=149 Identities=16% Similarity=0.178 Sum_probs=137.6
Q ss_pred hhcCCCCcHh-HHHHHHHHHHhcCC---------HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHH
Q 048764 15 KRKTNPNPET-NFLISLQSCTKSKD---------LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRH 84 (295)
Q Consensus 15 ~~~~~~~p~~-t~~~li~~~~~~g~---------~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~ 84 (295)
+++.+..|+. |||+||.+|++.+. ++.|+++|++|.+.|+.||.+|||+||++|.+.+. +++
T Consensus 52 M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~--------~~~ 123 (501)
T 4g26_A 52 ARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDD--------PEM 123 (501)
T ss_dssp HHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC--------HHH
T ss_pred HHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCC--------HHH
Confidence 4556788887 99999999998765 78999999999999999999999999996655553 999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------ 158 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------ 158 (295)
|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|. ..|+.||..||++||.+|++.|++++|++
T Consensus 124 A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 124 AFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999998
Q ss_pred -------HHHHHHHHHHHHhc
Q 048764 159 -------EQEITALLKVSAGT 172 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~ 172 (295)
+.+|+.|+..|+..
T Consensus 203 ~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 203 DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTSSBCHHHHHHHHHHHHSH
T ss_pred HhCCCcCHHHHHHHHHHHhcC
Confidence 45699999999864
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=7.1e-23 Score=202.95 Aligned_cols=124 Identities=11% Similarity=0.062 Sum_probs=114.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESAL---SLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~---~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
|||++|++||+.|++++|+.+|++|. ..|+.||++|||+||+ +|..+. +++|.++|++|.+.|+.||
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~---------~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA---------FKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC---------HHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999886 4589999999999999 666666 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCH-HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 101 EALVTSVARLAASKKDS-DYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~-~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
++|||+||+++|+.|+. ++|.++|++|. ..|+.||.+||+++|.++.+.+-++....
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 99999999999999985 78999999999 99999999999999999888876666555
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=173.04 Aligned_cols=113 Identities=10% Similarity=0.069 Sum_probs=94.2
Q ss_pred CCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 56 LSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLS---NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 56 pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~---~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
--..|||+||+ +|..+. +++|.++|.+|.+ .|+.||++|||+||+|||+.|++++|.++|++|. ..
T Consensus 125 ~~~~TynaLIdglcK~G~---------leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~-~~ 194 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQ---------LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK-DA 194 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HT
T ss_pred hHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHH-Hc
Confidence 34579999999 555555 9999999998864 5899999999999999999999999999999999 99
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcccCCChhHHHHH
Q 048764 132 NVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGR-VEKVYQYLQKLRSTVRCVNEETGKII 200 (295)
Q Consensus 132 gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~-~~~a~~ll~~m~~~~~~p~~~t~~~l 200 (295)
|+.||.+|||+||++ +|+.|+ .++|.++|++|.+.|+.||..|++.+
T Consensus 195 G~~PDvvTYntLI~g----------------------lcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~l 242 (1134)
T 3spa_A 195 GLTPDLLSYAAALQC----------------------MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242 (1134)
T ss_dssp TCCCCHHHHHHHHHH----------------------HHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSC
T ss_pred CCCCcHHHHHHHHHH----------------------HHhCCCcHHHHHHHHHHHHHcCCCCChhhcccc
Confidence 999999996665554 566665 35677888888888888888777743
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.47 E-value=2.5e-12 Score=122.60 Aligned_cols=170 Identities=9% Similarity=-0.048 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------------CCCHHhHHHHHHHHHcC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF---------------------------------RLSLHHFNALLYLCSNS 71 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~---------------------------------~pd~~ty~~ll~~~~~~ 71 (295)
+|+.++..|.+.|++++|+.+|++|.+.+. +.+..+|+.+..+|...
T Consensus 307 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHh
Confidence 788888888888888888888888775431 23445555555533333
Q ss_pred CCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC
Q 048764 72 ATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENL 151 (295)
Q Consensus 72 ~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g 151 (295)
+ .+++|.++|++|.+.. +.+..+|+.++.+|.+.|++++|+++|++|. ..+ .++..+|+.++.+|.+.|
T Consensus 387 g--------~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 387 N--------KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAA-RLF-QGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp T--------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTT-TTCSHHHHHHHHHHHHHT
T ss_pred c--------cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHcC
Confidence 3 3888888888887632 2457788888888888888888888888887 544 357778888888888888
Q ss_pred CHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----ccCCC--hhHHHHHHHHHh
Q 048764 152 EAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST----VRCVN--EETGKIIEDWFS 205 (295)
Q Consensus 152 ~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~----~~~p~--~~t~~~l~~~~~ 205 (295)
++++|.. ...|+.+...|.+.|++++|..+|++|.+. +..|+ ..++..+...+.
T Consensus 456 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 8888877 223888888899999999999999988776 55666 456666666653
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.45 E-value=4.6e-12 Score=120.82 Aligned_cols=185 Identities=5% Similarity=-0.111 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.+|+.++..|.+.|++++|+.+|++|.+.. +.+..+|+.++.++...+. +++|.++|++|.+.+ +.+..+
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~-~~~~~~ 443 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGE--------HDQAISAYTTAARLF-QGTHLP 443 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTT-TTCSHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-ccchHH
Confidence 389999999999999999999999998753 4467899999995544442 999999999998754 357899
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------H-------------HHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------E-------------QEITA 164 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e-------------~~y~~ 164 (295)
|+.++.+|.+.|++++|.++|++|. ... ..+..+|+.+...|.+.|+.++|.. + ..|..
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSY-ALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 9999999999999999999999998 554 3467889999999999999999988 1 13788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccc--hhHHHHHHHh
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCD--LGLVKNAVLK 225 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~--~~~v~~~~~~ 225 (295)
+..+|.+.|++++|..+++++.+.. ..+..++..+...+.. .++|+ ....++++..
T Consensus 522 l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 522 LGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH----KKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence 9999999999999999999988754 3356777777777744 44553 3344444443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.94 E-value=8.6e-08 Score=87.68 Aligned_cols=166 Identities=11% Similarity=-0.014 Sum_probs=130.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...|.+.|++++|+.+|+++.+. .+.+..+|..+...+...+. +++|...|+++.+.+ +.+..+|
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFLAMGK--------SKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-CCcHHHH
Confidence 8999999999999999999999999875 35578888888885554442 999999999998854 3468899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc----ccHHHHHH------------HHHhcCCHHHhhc----------
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRL----RTYDPALF------------CFCENLEAQKAYE---------- 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~ll~------------~~~~~g~~~~A~~---------- 158 (295)
..+...|.+.|++++|..+|+.+. .. .|+. ..+..+.. .+...|+.++|..
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVL-KS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-TS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999998 53 4554 45555543 4888999999888
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
...+..+..++...|++++|..++.++.... ..+..++..+...+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY 221 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 2237788888999999999999999987642 23345565555555
No 8
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.90 E-value=6.5e-07 Score=73.31 Aligned_cols=169 Identities=11% Similarity=0.023 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+...|++++|+..|+++.+.. +.+...|..+...+...+. +++|...|+...+.. +.+..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 79 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKV--------NDKAQESFRQALSIK-PDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhC-CCChHHH
Confidence 88899999999999999999999988753 4456777777775555442 999999999988743 3467899
Q ss_pred HHHHHHHHcC-CCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 105 TSVARLAASK-KDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 105 ~~li~~~~~~-g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
..+...|... |++++|..+|+.+. ..+..|+ ...|..+...|...|+.++|.. ...+..+...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKAL-ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH-TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHH-cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 9999999999 99999999999999 6333444 4678888889999999999988 222778888899
Q ss_pred hcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..|++++|..++++.....-..+...+..+...+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999999999999987753213444454444443
No 9
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.86 E-value=4e-07 Score=81.91 Aligned_cols=166 Identities=13% Similarity=0.096 Sum_probs=102.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
+|..+...+.+.|++++|+..|+++.+.. +-+...|..+-..+...+ .+++|...|++..... +-+..+|
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR--------IFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT--------CTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhC-cCCHHHH
Confidence 44455555555555555555555554432 122333333333333322 1556666666555422 2246778
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
+.+...|...|++++|...|+++. ... ..+..+|..+...|.+.|+.++|.. ...|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAI-ELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 888888888888888888888887 433 2234567888888888888888877 22377788888888
Q ss_pred CCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
|++++|..+++++.+. .|+ ..++..+...+
T Consensus 319 g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEV--FPEFAAAHSNLASVL 349 (388)
T ss_dssp TCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 8888888888888663 343 34555555555
No 10
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.84 E-value=2.5e-07 Score=77.78 Aligned_cols=168 Identities=11% Similarity=0.058 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+.+|+++.+.. +.+...+..+...+...+. +++|..+|++..+.. +.+..+|
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 108 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEME--------PKLADEEYRKALASD-SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC-cCcHHHH
Confidence 78888899999999999999999998764 4466777777775555442 999999999988753 3477899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
..+...|...|++++|.++|+++. ..+..| +...|..+...|...|+.++|.. ...|..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEAS-QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHT-TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 999999999999999999999998 644456 45667888889999999999988 2237788888999
Q ss_pred cCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
.|++++|..++.+..... ..+...+..+...+
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 219 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLA 219 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 999999999999987632 22344455554444
No 11
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.83 E-value=7.7e-07 Score=77.92 Aligned_cols=166 Identities=12% Similarity=0.033 Sum_probs=125.0
Q ss_pred CCcHh-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET-NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~-t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
.+|+. ++..+...+.+.++.++|+..|+++...+..|+...+..++. ++...+. +++|.+.|+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~--------~~~Al~~l~~------ 126 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQN--------PDAALRTLHQ------ 126 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTC--------HHHHHHHHTT------
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHhC------
Confidence 34444 888899999999999999999999998877676666666654 4444442 9999999987
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH---HHHHHHHhcCCHHHhhc------------HHHH
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD---PALFCFCENLEAQKAYE------------EQEI 162 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~---~ll~~~~~~g~~~~A~~------------e~~y 162 (295)
+.+..++..+...|.+.|++++|...|+.+. ... |+...++ .++..+...|+.++|.. ...|
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~-~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~ 203 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQ-DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLL 203 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence 5788899999999999999999999999998 553 7643221 23334445588998888 1227
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
+.+-.++.+.|++++|...|++.... .|+ +.++..+...+
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 88888899999999999999997764 454 44554444333
No 12
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=98.83 E-value=4.7e-07 Score=76.12 Aligned_cols=158 Identities=9% Similarity=0.020 Sum_probs=128.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC-CHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP-NEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p-d~~t 103 (295)
.|..+...|.+.|++++|+.+|+++.+.. +.+...+..+...+...+. +++|.++|+++...+..| +...
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~ 143 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKR--------YEEAYQRLLEASQDTLYPERSRV 143 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTCTTCTTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHhCccCcccHHH
Confidence 88888899999999999999999988764 3466777777775554442 999999999998854555 5678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
|..+...|...|++++|..+|++.. ... ..+...|..+...|...|+.++|.. ...+..+...+..
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSL-RLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV 221 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 8899999999999999999999988 544 3356778899999999999999988 2237778888999
Q ss_pred cCCHHHHHHHHHHHHHcccCCChh
Q 048764 172 TGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.|+.++|..+++++.+. .|+..
T Consensus 222 ~g~~~~A~~~~~~~~~~--~p~~~ 243 (252)
T 2ho1_A 222 FEDRDTAASYGLQLKRL--YPGSL 243 (252)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTSH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCH
Confidence 99999999999999774 35433
No 13
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=2.2e-07 Score=83.69 Aligned_cols=156 Identities=10% Similarity=0.020 Sum_probs=130.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|.++.... +-+..++..+...+...+. +++|...|+++.+.+ +.+..+|
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGL--------IDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTC-SSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CCCHHHH
Confidence 78888899999999999999999987653 3457788888885444442 999999999998854 2357789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
+.+...+.+.|++++|..+|+++. ... .++..+|+.+...+.+.|+.++|.. ...|..+...+.+.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTAL-RLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999998 553 5677889999999999999999988 22388899999999
Q ss_pred CCHHHHHHHHHHHHHcccCCCh
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
|++++|...++++.+ ..|+.
T Consensus 353 g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 353 GKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp TCCHHHHHHHHHHHT--TCTTC
T ss_pred CCHHHHHHHHHHHHh--hCCCC
Confidence 999999999999986 35543
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.77 E-value=4.4e-07 Score=82.92 Aligned_cols=157 Identities=13% Similarity=0.065 Sum_probs=128.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-H-
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-E- 101 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~- 101 (295)
..|..+...|.+.|++++|+..|+++.+.+ +.+...+..+..++...+. +++|...|+++.+.. |+ .
T Consensus 61 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~--~~~~~ 129 (450)
T 2y4t_A 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGK--------LDEAEDDFKKVLKSN--PSENE 129 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSC--CCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC--CCChh
Confidence 389999999999999999999999998764 4457788888885555443 999999999998743 54 3
Q ss_pred --HHHHHHHHH------------HHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------
Q 048764 102 --ALVTSVARL------------AASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------- 158 (295)
Q Consensus 102 --~ty~~li~~------------~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------- 158 (295)
.++..++.. +...|++++|..+|+.+. ... ..+...+..+...|.+.|+.++|..
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 130 EKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL-EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 566666544 888999999999999998 544 3467789999999999999999988
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 159 ---EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 159 ---e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
...|..+...+...|++++|..+++++... .|+..
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 245 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHK 245 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChH
Confidence 223888999999999999999999999753 45443
No 15
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.73 E-value=1.1e-06 Score=69.45 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=123.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+...|++++|+..|+++.+.. +.+...+..+...+...+. +++|...|++..+.. +.+..+|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 79 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGA--------VDRGTELLERSLADA-PDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 77888888999999999999999887543 3466777777775554442 999999999987753 3567889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...+...|++++|.++|+... ... ..+...+..+...|...|+.++|.. ...|..+...+...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVA-EAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-hcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence 999999999999999999999988 553 3456778888889999999999888 12377788888999
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
|++++|..++++....
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999987653
No 16
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.73 E-value=6.6e-07 Score=74.41 Aligned_cols=167 Identities=8% Similarity=0.002 Sum_probs=103.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+.+|+++.+.. +.+...+..+...+...+. +++|...|++..+.. +.+..+|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 94 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNE--------LERALAFYDKALELD-SSAATAY 94 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-CcchHHH
Confidence 67777777888888888888888887642 3456666666664444442 888888888877643 2467778
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...|...|++++|..+|+++. ... ..+...|..+...|...|+.++|.. ...+..+...+...
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKAL-RAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc
Confidence 888888888888888888888877 543 3355667777788888888888877 12266677778888
Q ss_pred CCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
|++++|..++.+..... ..+..++..+...+
T Consensus 173 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQD-PGHADAFYNAGVTY 203 (243)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 88888888888876642 12234454444444
No 17
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.73 E-value=2.9e-06 Score=69.32 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHhCCCCCC-H
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLSNNVIPN-E 101 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~ 101 (295)
..|..+...|...|++++|+.+|+++.+.. +.+..++..+...+... +. +++|...|+.+.+.+..|+ .
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~ 113 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNR--------PAESMAYFDKALADPTYPTPY 113 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCC--------HHHHHHHHHHHHTSTTCSCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHcCcCCcchH
Confidence 388889999999999999999999998763 44667777777755555 53 9999999999988433344 6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HH-----HHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQ-----EITALLKV 168 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~-----~y~~ll~~ 168 (295)
.+|..+...+...|++++|..+|+++. ... ..+...+..+...|.+.|+.++|.. .+ .+..+...
T Consensus 114 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFGLAEAYLKRSL-AAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKI 191 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 788999999999999999999999998 543 2346778889999999999999988 22 26667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcccCCChhHH
Q 048764 169 SAGTGRVEKVYQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~~~~~~p~~~t~ 197 (295)
+...|+.+.|..+++.+... .|+....
T Consensus 192 ~~~~~~~~~a~~~~~~~~~~--~p~~~~~ 218 (225)
T 2vq2_A 192 AKALGNAQAAYEYEAQLQAN--FPYSEEL 218 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence 88999999999999998753 4554433
No 18
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.68 E-value=1.9e-06 Score=71.54 Aligned_cols=152 Identities=14% Similarity=0.156 Sum_probs=126.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...|.+.|++++|+..|+++.+.. +.+...+..+...+...+. +++|...|+++.+.. +.+..+|
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 128 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEM--------YKEAKDMFEKALRAG-MENGDLF 128 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHT-CCSHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 88888999999999999999999988763 4466777777775554442 999999999998743 3567889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...+...|++++|..+++++. ... ..+...|..+...|...|+.++|.. ...|..+...+...
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 206 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAV-ELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYK 206 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 999999999999999999999988 543 3456778889999999999999988 22377888889999
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
|+.++|...+++..+.
T Consensus 207 ~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 207 ENREKALEMLDKAIDI 222 (243)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcc
Confidence 9999999999998773
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.64 E-value=1.3e-08 Score=94.08 Aligned_cols=151 Identities=10% Similarity=-0.054 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.+|..+..++.+.|++++|+..|.. .+|..+|..+++.|...+ .+++|...++...+. .++..+
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g--------~~EeAi~yl~~ark~--~~~~~i 96 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSG--------NWEELVKYLQMARKK--ARESYV 96 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHh--Cccchh
Confidence 4999999999999999999999965 367889999999666555 389999966665553 466788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhcCCHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----EQEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~g~~~~a~ 179 (295)
.+.++.+|++.|+++++.++|+ .|+..+|..+...|...|..++|.. .+.|..|..++.+.|++++|.
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHH
Confidence 9999999999999988877763 3777799999999999999999888 556999999999999999999
Q ss_pred HHHHHHHHcccCCChhHHHHHHHHH
Q 048764 180 QYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 180 ~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
+.+.++ .++.+|..+...+
T Consensus 169 ea~~KA------~~~~~Wk~v~~aC 187 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFAC 187 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHH
T ss_pred HHHHHc------CCchhHHHHHHHH
Confidence 999987 2577787665544
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.61 E-value=8.4e-06 Score=72.13 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-C-------------C---------------
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-D-------------P--------------- 75 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~-------------~--------------- 75 (295)
.|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...+. + +
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 178 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhh
Confidence 66666677777777777777777766553 3355566666554433322 0 0
Q ss_pred ------------CcchHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHH
Q 048764 76 ------------SLKDSALRHGFRVFDQMLSNNVI-PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDP 142 (295)
Q Consensus 76 ------------~~~~~~~~~a~~lf~~M~~~g~~-pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ 142 (295)
....|.+++|..+|+++.+.... ++..+|..+...|...|++++|..+|+++. ... ..+..+|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~-~~~~~~~~~ 256 (368)
T 1fch_A 179 AGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL-SVR-PNDYLLWNK 256 (368)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHH
T ss_pred hcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-cCCHHHHHH
Confidence 00224455666666666553211 157888888999999999999999999887 543 234567888
Q ss_pred HHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 143 ALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 143 ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+...|...|+.++|.. ...|..+-..+.+.|++++|...+.+....
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888899999988887 223777888888899999999999887664
No 21
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.60 E-value=3.9e-06 Score=73.35 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=134.2
Q ss_pred CCCcHh---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 19 NPNPET---NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 19 ~~~p~~---t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
...|+. ..-.+...|...|+++.|+..++. .-+|+..++..+..++...+. .++|.+.|+++...
T Consensus 27 ~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~--------~~~A~~~l~~ll~~ 94 (291)
T 3mkr_A 27 PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR--------RDAIVAELDREMSR 94 (291)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT--------HHHHHHHHHHHHHS
T ss_pred cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc--------HHHHHHHHHHHHhc
Confidence 345554 345567899999999999987654 256788888888886666653 99999999999988
Q ss_pred CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HHH--H--
Q 048764 96 NVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQE--I-- 162 (295)
Q Consensus 96 g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~~--y-- 162 (295)
++.|+ ...+..+-..+...|++++|+++|+. ..+...+..+...|.+.|+.++|.. .|+ .
T Consensus 95 ~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 167 (291)
T 3mkr_A 95 SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167 (291)
T ss_dssp CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence 76564 55566666899999999999999987 3567789999999999999999988 111 1
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccc--hhHHHHHHHhcC
Q 048764 163 --TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCD--LGLVKNAVLKNG 227 (295)
Q Consensus 163 --~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~--~~~v~~~~~~~g 227 (295)
.+++..+...|++++|..+|+++... ...+...+..+-..+.. .++|+ ...+++++....
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~----~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMA----QGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Confidence 23445555669999999999999886 23344555555444422 44553 345666666544
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.60 E-value=1.5e-06 Score=77.40 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN---- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd---- 100 (295)
.|..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...+ .+++|...|+++.+.. |+
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~--p~~~~~ 169 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTS--------HQQDACEALKNWIKQN--PKYKYL 169 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC--HHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccc--------cHHHHHHHHHHHHHhC--ccchHH
Confidence 66666677777777777777777666542 334556666666444333 2777777777776522 21
Q ss_pred -------HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCCcccHHHHHHHHHhcCCHHHhhc------------HH
Q 048764 101 -------EALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLRTYDPALFCFCENLEAQKAYE------------EQ 160 (295)
Q Consensus 101 -------~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~ty~~ll~~~~~~g~~~~A~~------------e~ 160 (295)
..+++.+...+...|++++|..+|+++. ...- .++..+|..+...|...|+.++|.. ..
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 248 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA-HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHH-HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHH-HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 2334445667777777888888777777 4321 1145677777777777787777777 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
.|..+..++...|++++|...+++.... .|+ ...+..+...+
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 291 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISC 291 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 2677777777778888887777777654 343 34444444444
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.59 E-value=4.7e-06 Score=74.10 Aligned_cols=166 Identities=11% Similarity=-0.007 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+...+...+. +++|...|++..+.. +.+..+|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENEN--------EQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 68888999999999999999999998764 4567888888885555442 999999999998753 3468899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-----------cccHHHHHHHHHhcCCHHHhhc--------------H
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-----------LRTYDPALFCFCENLEAQKAYE--------------E 159 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-----------~~ty~~ll~~~~~~g~~~~A~~--------------e 159 (295)
..+...|...|++++|..+|+++. ... |+ ...+..+...|.+.|+.++|.. .
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 213 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWI-KQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCH
T ss_pred HHHHHHHHccccHHHHHHHHHHHH-HhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH
Confidence 999999999999999999999988 432 33 2233445778889999999988 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 160 QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 160 ~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..|..+...+...|++++|..++++..... ..+..++..+-..+
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATL 257 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 237788888999999999999999987742 22345665555554
No 24
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.59 E-value=2.6e-06 Score=63.30 Aligned_cols=127 Identities=18% Similarity=0.187 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+ ..+. +++|..+|+++...+ +.+..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD---------YDEAIEYYQKALELD-PRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHC-CCchHH
Confidence 57778888999999999999999998764 34567777777744 4455 999999999998754 356788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYL 182 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll 182 (295)
|..+...+...|++++|..+|+++. ... |+ ... +..+...+...|+.++|..++
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~----------------------~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKAL-ELD--PRSAEA----------------------WYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH-HHC--TTCHHH----------------------HHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-HhC--CCChHH----------------------HHHHHHHHHHHccHHHHHHHH
Confidence 9999999999999999999999998 543 32 222 344556677778888888888
Q ss_pred HHHHH
Q 048764 183 QKLRS 187 (295)
Q Consensus 183 ~~m~~ 187 (295)
.++..
T Consensus 127 ~~~~~ 131 (136)
T 2fo7_A 127 QKALE 131 (136)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77655
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.9e-06 Score=70.08 Aligned_cols=167 Identities=9% Similarity=-0.024 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC--CCCC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN--VIPN-- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g--~~pd-- 100 (295)
.|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-..+...+. +++|...|+...+.. ..|+
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGE--------YETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCcccccchH
Confidence 78888899999999999999999998877 777888888885554442 999999999987632 2233
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC------------------------CCCC-cccHHHHHHHHHhcCCH
Q 048764 101 --EALVTSVARLAASKKDSDYAFELIKRMNNEFN------------------------VVPR-LRTYDPALFCFCENLEA 153 (295)
Q Consensus 101 --~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g------------------------i~P~-~~ty~~ll~~~~~~g~~ 153 (295)
..+|..+...|...|++++|...|++.. ... ..|+ ...|..+...|...|+.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSL-TEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 5889999999999999999999999988 532 2332 34677788888899999
Q ss_pred HHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 154 QKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 154 ~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
++|.. ...|..+-..+...|++++|...+.+.... .|+ ...+..+...+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHH
Confidence 99988 223778888899999999999999998774 344 44454444444
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.55 E-value=1.1e-05 Score=69.91 Aligned_cols=104 Identities=8% Similarity=-0.065 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
+++|...|+...+.. +.+..+|..+...+...|++++|...|+... ... ..+...+..+...|...|+.++|..
T Consensus 107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (330)
T 3hym_B 107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAA-QLM-KGCHLPMLYIGLEYGLTNNSKLAERFFS 183 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hhc-cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555555555432 1234455555556666666666666666555 332 1223444555555566666665555
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 ---------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 ---------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...+..+...+...|++++|..++.+....
T Consensus 184 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 184 QALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 122566666677777777777777776553
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.54 E-value=2e-05 Score=69.64 Aligned_cols=167 Identities=12% Similarity=0.010 Sum_probs=128.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+...+...+. +++|...|+++.+.. +.+..+|
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-~~~~~~~ 135 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ--------ELLAISALRRCLELK-PDNQTAL 135 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 67788889999999999999999998764 4567778777775555442 999999999998754 3578899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcC-----------------------------------------------CCC--
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFN-----------------------------------------------VVP-- 135 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~g-----------------------------------------------i~P-- 135 (295)
..+...|...|++++|..+|+.+. ... +.|
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 214 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDWL-RYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS 214 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc
Confidence 999999999999999999998876 322 112
Q ss_pred -CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHH
Q 048764 136 -RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIE 201 (295)
Q Consensus 136 -~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~ 201 (295)
+..+|..+...|.+.|+.++|.. ...|..+...+...|++++|..++++.... .|+ ...+..+.
T Consensus 215 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~ 292 (368)
T 1fch_A 215 IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLG 292 (368)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 35667778888888899888887 223778888888999999999999988764 343 34444444
Q ss_pred HHH
Q 048764 202 DWF 204 (295)
Q Consensus 202 ~~~ 204 (295)
..+
T Consensus 293 ~~~ 295 (368)
T 1fch_A 293 ISC 295 (368)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.54 E-value=1.7e-05 Score=68.57 Aligned_cols=161 Identities=12% Similarity=0.043 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-------------------------------
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT------------------------------- 73 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~------------------------------- 73 (295)
.|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...+.
T Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (327)
T 3cv0_A 57 AWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVD 135 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHH
Confidence 66667777777777777777777776552 3345555555554333221
Q ss_pred --------C--CCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHH
Q 048764 74 --------D--PSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPA 143 (295)
Q Consensus 74 --------~--~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~l 143 (295)
. .....|.+++|..+|+++.+.. +.+..++..+...|...|++++|..+|+++. ... ..+..+|..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l 212 (327)
T 3cv0_A 136 IDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAV-ELR-PDDAQLWNKL 212 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred HHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhC-CCcHHHHHHH
Confidence 0 1234456777777777776643 2467888899999999999999999999987 543 3346678888
Q ss_pred HHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 048764 144 LFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 144 l~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~ 189 (295)
...|...|+.++|.. ...|..+...+...|++++|...+++.....
T Consensus 213 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 889999999999888 2237778888889999999999999887643
No 29
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.51 E-value=3.5e-06 Score=72.42 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=122.7
Q ss_pred CCCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHH
Q 048764 18 TNPNPET--NFLISLQSCTKSKDLATAISLYESALSL-------NFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRV 88 (295)
Q Consensus 18 ~~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-------g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~l 88 (295)
....|+. +|..+-..|...|++++|+.+|+++.+. ..+....++..+-..+...+. +++|...
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~ 91 (311)
T 3nf1_A 20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------YKDAANL 91 (311)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------HHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHH
Confidence 3344544 8999999999999999999999998863 233345566666665554442 8899998
Q ss_pred HHHHHhC------CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc------CCCC-CcccHHHHHHHHHhcCCHH
Q 048764 89 FDQMLSN------NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 89 f~~M~~~------g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~------gi~P-~~~ty~~ll~~~~~~g~~~ 154 (295)
|++.... +- +....+|..+...|...|++++|..+|++.. .. +-.| ....|..+...|...|+.+
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 8887653 22 3346788999999999999999999999887 43 2223 3456778888999999999
Q ss_pred Hhhc------H--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 155 KAYE------E--------------QEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 155 ~A~~------e--------------~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+|.. . ..+..+-..+...|++++|..++.+...
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9988 1 1167778889999999999999999876
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.50 E-value=2.3e-07 Score=85.69 Aligned_cols=144 Identities=12% Similarity=0.142 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCC--------------------CCcchHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATD--------------------PSLKDSALRH 84 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~--------------------~~~~~~~~~~ 84 (295)
+|..++..|.+.|++++|+..++..++. .+++.+.+.|+.+|.+.+.- .....|.+++
T Consensus 63 ~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 63 SYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ------------------------------------------------CHHHHTTTTTCC----------------CTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555555544433332 33344555555544443320 0011112666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------ 158 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------ 158 (295)
|...|..+ ..|..|+..+.+.|++++|.+.+..+. +..||..++.+|...|+++.|..
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~ 204 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV 204 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 66666654 256666666666666666666666552 45677777777777777777765
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
..+...++..|.+.|++++|..+|+.-.
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 2234567777888888888877777654
No 31
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.48 E-value=2.2e-05 Score=68.02 Aligned_cols=152 Identities=13% Similarity=0.023 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|+++.+.. +.+...+..+-..+...+. +++|...|++..+.. +.+..+|
T Consensus 127 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~ 196 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN--------SKLAERFFSQALSIA-PEDPFVM 196 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHhC-CCChHHH
Confidence 44455555555555555555555554432 1122233333333322221 555555555555432 2344555
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcC--------CCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFN--------VVPRLRTYDPALFCFCENLEAQKAYE------------EQEITA 164 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~g--------i~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ 164 (295)
..+...+...|++++|..+|++.. ... ...+..+|..+...|...|+.++|.. ...|..
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 275 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDAL-EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSA 275 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHH
Confidence 555555556666666665555554 210 01223455555555555666555555 111455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 048764 165 LLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 165 ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+-..+...|++++|...+++..+
T Consensus 276 la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 276 IGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHc
Confidence 55555555666666665555443
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=8.2e-06 Score=68.08 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=121.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC-
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLN--FRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN- 96 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g--~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g- 96 (295)
..|..+-..|...|++++|+..|+++.+.. ..|+ ..+|..+-..+...+. +++|...|++.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~ 110 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD--------LKKTIEYYQKSLTEHR 110 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhcCc
Confidence 478888899999999999999999987543 2222 4667777775555443 788888888776621
Q ss_pred -----------------------CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC
Q 048764 97 -----------------------VIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLE 152 (295)
Q Consensus 97 -----------------------~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~ 152 (295)
..| +...|..+...+...|++++|...|++.. ... ..+..+|..+...|.+.|+
T Consensus 111 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~ 188 (258)
T 3uq3_A 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMS 188 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHhCC
Confidence 222 45678888999999999999999999998 544 3456788899999999999
Q ss_pred HHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 AQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 ~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|+.++|...+++..+.
T Consensus 189 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999998 223778888899999999999999997664
No 33
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.42 E-value=5.1e-05 Score=60.49 Aligned_cols=151 Identities=12% Similarity=0.097 Sum_probs=121.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+=..|.+.|++++|+..|++..+.. +-+..+|..+-..+...+. +++|...+....... +-+...+
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~-~~~~~~~ 76 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGL--------PNDAIESLKKFVVLD-TTSAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-CCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-chhHHHH
Confidence 78888889999999999999999988763 3466677777775555443 999999999987743 2456778
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+-..+...++++.|...+.... ... .-+...+..+-..|.+.|+.++|.. ...|..+-.++.+.
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~-~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAI-ALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 888888999999999999999987 443 3345678888889999999999998 22377788889999
Q ss_pred CCHHHHHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRS 187 (295)
Q Consensus 173 g~~~~a~~ll~~m~~ 187 (295)
|++++|...+++..+
T Consensus 155 g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 155 GLRDEAVKYFKKALE 169 (184)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999765
No 34
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.42 E-value=6.5e-05 Score=69.27 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|...-..+.+.|++++|+..|+++.+.. ||..+|..+...+...+. +++|...|+++.+.+ +.+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGD--------LKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhh--------HHHHHHHHHHHhccC-hHHHHHH
Confidence 56667788899999999999999998875 788889888885544442 999999999998754 3567899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
..+..+|.+.|++++|...|+.+. ..+
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 103 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLS-LNG 103 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-hcC
Confidence 999999999999999999999887 544
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.41 E-value=8.1e-06 Score=67.84 Aligned_cols=156 Identities=10% Similarity=-0.056 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCC---CCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSA---TDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~---~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
.|..+-..+.+.|++++|+..|++..+.. +-+...+..+-..+.... .......|.+++|...|+...+.. +-+.
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~ 118 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYA 118 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccH
Confidence 67777777888888888888888877653 334455555555443330 000000135999999999988743 2357
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVS 169 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~ 169 (295)
..|..+-..|...|++++|+..|++.. ... .+...+..+-..|...|+.++|.. ...+..+-..+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQAL-ALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH-hcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 888999999999999999999999998 666 677788888888888888888877 11266667777
Q ss_pred HhcCCHHHHHHHHHHH
Q 048764 170 AGTGRVEKVYQYLQKL 185 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m 185 (295)
...|+.++|...+++.
T Consensus 196 ~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 196 LLKGKAEEAARAAALE 211 (217)
T ss_dssp TC--------------
T ss_pred HHccCHHHHHHHHHHH
Confidence 7888888888777654
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.39 E-value=6.3e-05 Score=63.39 Aligned_cols=121 Identities=13% Similarity=0.005 Sum_probs=92.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...|...|++++|+..|+++.+.. +.+..+|..+-..+...+. +++|...|+...+.. +.+..+|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~ 114 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN--------FDAAYEAFDSVLELD-PTYNYAH 114 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCTHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhcC-ccccHHH
Confidence 88889999999999999999999988764 4467788888775554442 999999999988743 2357889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..+...|...|++++|..+|+.+. .. .|+...+...+..+...|+.++|..
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a~-~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAFY-QD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-Hh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999987 43 4655554545555555566666554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.36 E-value=3.1e-05 Score=64.24 Aligned_cols=165 Identities=13% Similarity=0.020 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +-+...+..+-..+...+. +++|...|+...+.. +-+...|
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~ 76 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGL--------VNPALENGKTLVART-PRYLGGY 76 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCcHHHH
Confidence 77777888999999999999999988653 4456666666665554442 999999999988743 2457789
Q ss_pred HHHHHHHHcC-----------CCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc-----------HHH
Q 048764 105 TSVARLAASK-----------KDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE-----------EQE 161 (295)
Q Consensus 105 ~~li~~~~~~-----------g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~-----------e~~ 161 (295)
..+-..+... |++++|...|+... .. .|+ ...|..+-..|...|+.++|.. ...
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 153 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE-RV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEI 153 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH-Hh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHH
Confidence 9999999999 99999999999988 54 454 5567788889999999999988 122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh-hHHHHHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWF 204 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~-~t~~~l~~~~ 204 (295)
+..+-.++...|++++|...+++..+. .|+. ..+..+...+
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 677788899999999999999998764 4544 3444444444
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.34 E-value=0.00015 Score=62.55 Aligned_cols=167 Identities=10% Similarity=-0.028 Sum_probs=117.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+...+...+. +++|...|+++.+.. +.+..+|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 92 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLD-PKDIAVH 92 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-cCCHHHH
Confidence 66777788999999999999999998764 4466777777775554442 999999999988753 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCC-----------------------------------------------CC-C
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNV-----------------------------------------------VP-R 136 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi-----------------------------------------------~P-~ 136 (295)
..+...|...|++++|...|+... ...- .| +
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWL-LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999888876 3210 11 2
Q ss_pred cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC-hhHHHHHHHH
Q 048764 137 LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN-EETGKIIEDW 203 (295)
Q Consensus 137 ~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~ 203 (295)
...+..+...|...|+.++|.. ...|..+...+...|++++|..++.+.... .|+ ...+..+...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 3445556666667777777666 122666667777778888888777776653 232 3444444444
Q ss_pred H
Q 048764 204 F 204 (295)
Q Consensus 204 ~ 204 (295)
+
T Consensus 250 ~ 250 (327)
T 3cv0_A 250 Y 250 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.31 E-value=9.7e-05 Score=64.42 Aligned_cols=165 Identities=12% Similarity=0.021 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+-..+.+.|++++|+..|+++.+.. +.+..++..+-. +...+. +++|...|+.+.+.. +-+..+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGK---------SKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccC---------HHHHHHHHHHHHHhC-CCcchH
Confidence 56666677788888888888888877643 334556666666 334444 888888888877642 235677
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC---C-cccHHHH------------HHHHHhcCCHHHhhc---------
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVP---R-LRTYDPA------------LFCFCENLEAQKAYE--------- 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P---~-~~ty~~l------------l~~~~~~g~~~~A~~--------- 158 (295)
|..+...|...|++++|..+|+... .. .| + ...+..+ ...+...|+.++|..
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVL-KS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-TS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH-hc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888888888877 33 35 2 2333333 366777888888777
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 159 ---EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 ---e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
...+..+-..+...|++++|...+.+..... ..+...+..+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLY 198 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 1226667777778888888888888876642 22334444444433
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.5e-05 Score=73.55 Aligned_cols=151 Identities=9% Similarity=0.016 Sum_probs=125.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+.+.|++++|+.+|+++.+.. |+...|..+...+...+. +++|...|+.+.... +.+..+|
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRND--------STEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSC--------CTTGGGHHHHHHTTC-TTCTHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCC--------HHHHHHHHHHHhhcC-cCCHHHH
Confidence 88888999999999999999999998765 337777777775555543 889999999988753 3467789
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...|...|++++|...|+... ... ..+...|..+...|...|+.++|.. ...|..+...+...
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 385 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAK-ELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK 385 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHH-HTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-HhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence 999999999999999999999998 543 3356788889999999999999988 12377888889999
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
|++++|..++.++...
T Consensus 386 ~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 386 NDFDKALKQYDLAIEL 401 (514)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998764
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.29 E-value=6.5e-05 Score=65.55 Aligned_cols=151 Identities=13% Similarity=0.049 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP----N 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p----d 100 (295)
.|..+-..+...|++++|+..|+++.+.. +-+...|..+-.++...+. +++|...|+...+. .| +
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~--~~~~~~~ 107 (359)
T 3ieg_A 39 AYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGK--------LDEAEDDFKKVLKS--NPSEQEE 107 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHTS--CCCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCC--------hHHHHHHHHHHHhc--CCcccCh
Confidence 88888999999999999999999998763 3355677777775544442 99999999999874 35 3
Q ss_pred HHHHHHH------------HHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----------
Q 048764 101 EALVTSV------------ARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 101 ~~ty~~l------------i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
...+..+ ...+...|++++|..+|+.+. ... ..+...+..+...|...|+.++|..
T Consensus 108 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 185 (359)
T 3ieg_A 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL-EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4445444 578889999999999999998 544 3456778889999999999999998
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...|..+-..+...|++++|...+.+....
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 233788888899999999999999998764
No 42
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.29 E-value=3.1e-05 Score=57.27 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|..+|+++.+.+ +.+..+|..+...+...|++++|..+|+++. ..+ |+ ...
T Consensus 17 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~--~~~~~~--------------------- 71 (136)
T 2fo7_A 17 YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD--PRSAEA--------------------- 71 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC--TTCHHH---------------------
T ss_pred HHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHH-HHC--CCchHH---------------------
Confidence 899999999987743 3467788888999999999999999999987 543 33 222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
+..+...+...|++++|..++.++.... ..+...+..+...+
T Consensus 72 -~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 72 -WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 113 (136)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 4456666778888889998888887643 22344555555555
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.26 E-value=3.3e-05 Score=65.20 Aligned_cols=143 Identities=9% Similarity=-0.042 Sum_probs=111.3
Q ss_pred hcCCHHHHHHHHHHHHhcCCC---CCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 35 KSKDLATAISLYESALSLNFR---LSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~~---pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
..+++++|+..|+++.+.... .+..+|..+...+...+. +++|...|++..+.. +.+..+|..+...|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL--------RALARNDFSQALAIR-PDMPEVFNYLGIYL 87 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 457899999999999876421 245666666665544442 999999999998753 34688999999999
Q ss_pred HcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHHHHHHHHHHHhcCCHHHHHH
Q 048764 112 ASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQEITALLKVSAGTGRVEKVYQ 180 (295)
Q Consensus 112 ~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~y~~ll~~~~~~g~~~~a~~ 180 (295)
...|++++|..+|++.. ... ..+...|..+...|.+.|+.++|.. .+.+..++..+...|+.++|..
T Consensus 88 ~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 88 TQAGNFDAAYEAFDSVL-ELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHTTCHHHHHHHHHHHH-HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHccCHHHHHHHHHHHH-hcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999999998 543 3357788999999999999999998 1224445555667799999999
Q ss_pred HHHHHHHc
Q 048764 181 YLQKLRST 188 (295)
Q Consensus 181 ll~~m~~~ 188 (295)
++.+....
T Consensus 166 ~~~~~~~~ 173 (275)
T 1xnf_A 166 VLKQHFEK 173 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99877664
No 44
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.25 E-value=5.3e-05 Score=74.67 Aligned_cols=154 Identities=11% Similarity=0.056 Sum_probs=125.6
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
.|+. .|+.+=..|.+.|++++|+..|++..+.. +-+..+|+.|-.++...+. +++|...|++..+.. +
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~--------~~eA~~~~~~Al~l~-P 74 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK--------LQEALMHYKEAIRIS-P 74 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-T
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-C
Confidence 4554 89999999999999999999999988753 3346777777775555442 999999999988743 2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc------------HHHHHHH
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE------------EQEITAL 165 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~l 165 (295)
-+..+|+.+-..|...|++++|++.|++.. .. .|+ ...|+.+-..|.+.|+.++|.. ...|..|
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl-~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L 151 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAI-QI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhh
Confidence 347899999999999999999999999987 54 454 5678999999999999999998 2238888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 048764 166 LKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 166 l~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...+...|++++|.+.+++..+
T Consensus 152 ~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 152 AHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHHHHHHH
Confidence 8999999999999888887654
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.24 E-value=0.0002 Score=62.42 Aligned_cols=168 Identities=11% Similarity=0.086 Sum_probs=119.7
Q ss_pred HHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCT-------KSKDL-------ATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~-------~~g~~-------~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.|..+...+. +.|++ ++|..+|++..+.--+-+...|..+..++...+. +++|..+|+
T Consensus 52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~ 123 (308)
T 2ond_A 52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------YEKVHSIYN 123 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC--------HHHHHHHHH
Confidence 6666666554 35775 9999999999874223355678888885554442 999999999
Q ss_pred HHHhCCCCCC-H-HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH-hcCCHHHhhc---------
Q 048764 91 QMLSNNVIPN-E-ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC-ENLEAQKAYE--------- 158 (295)
Q Consensus 91 ~M~~~g~~pd-~-~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~-~~g~~~~A~~--------- 158 (295)
...+ +.|+ . .+|..+...+.+.|++++|..+|+... ... .++...|........ ..|+.+.|..
T Consensus 124 ~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 124 RLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp HHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-TST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9987 4454 2 389999999999999999999999988 543 223333433322222 3699998887
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc-cCCC--hhHHHHHHHHH
Q 048764 159 ---EQEITALLKVSAGTGRVEKVYQYLQKLRSTV-RCVN--EETGKIIEDWF 204 (295)
Q Consensus 159 ---e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~-~~p~--~~t~~~l~~~~ 204 (295)
..-|..++..+.+.|+.++|..+|++..... ..|+ ...|..+..+.
T Consensus 200 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~ 251 (308)
T 2ond_A 200 GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251 (308)
T ss_dssp TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2237888888999999999999999998863 3442 34565554444
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.23 E-value=0.0011 Score=56.15 Aligned_cols=146 Identities=14% Similarity=0.045 Sum_probs=102.7
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc----CCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 25 NFLISLQSCTK----SKDLATAISLYESALSLNFRLSLHHFNALLYLCSN----SATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 25 t~~~li~~~~~----~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~----~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.+..+-..|.. .+++++|+..|++..+.+ +...+..|-..+.. .+ .+++|...|+...+.+
T Consensus 40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~--------~~~~A~~~~~~a~~~~ 108 (273)
T 1ouv_A 40 GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQ--------NTNKALQYYSKACDLK 108 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCccc--------CHHHHHHHHHHHHHcC
Confidence 55566666777 788888888888877765 45566655554444 22 2788888888877764
Q ss_pred CCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc----------
Q 048764 97 VIPNEALVTSVARLAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE---------- 158 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~---------- 158 (295)
+..++..+-..|.. .+++++|+..|+... ..+ +...+..+-..|.. .++.++|..
T Consensus 109 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 181 (273)
T 1ouv_A 109 ---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC-DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD 181 (273)
T ss_dssp ---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred ---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 66777777777877 888888888888877 554 44556666666666 778888777
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHc
Q 048764 159 EQEITALLKVSAG----TGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 e~~y~~ll~~~~~----~g~~~~a~~ll~~m~~~ 188 (295)
...+..+-..+.. .++.++|...+++..+.
T Consensus 182 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 182 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 1225556666777 78888888888887765
No 47
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.23 E-value=7e-05 Score=69.69 Aligned_cols=152 Identities=10% Similarity=0.055 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|+++.+. .|+...|..+-..+...+. +++|...|++..+.. +.+..+|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 313 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKEN--------SQEFFKFFQKAVDLN-PEYPPTY 313 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSC--------CHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcC--------HHHHHHHHHHHhccC-CCCHHHH
Confidence 4666667888999999999999999875 4556677776666555543 899999999998743 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+...|...|++++|...|+... ... ..+...|..+...|...|+.++|.. ...|..+-..+...
T Consensus 314 ~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 314 YHRGQMYFILQDYKNAKEDFQKAQ-SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 999999999999999999999998 544 2346688899999999999999988 22378888889999
Q ss_pred CCHHHHHHHHHHHHHcc
Q 048764 173 GRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~ 189 (295)
|++++|...+.+.....
T Consensus 392 g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 99999999999986643
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.19 E-value=7.6e-05 Score=58.53 Aligned_cols=121 Identities=11% Similarity=-0.033 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+...+...|++++|+.+|+++.+.. +.+...+..+...+ ..+. +++|...|++..+.. +.+..+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~ 112 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK---------YDLAVPLLIKVAEAN-PINFNV 112 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHhcC-cHhHHH
Confidence 88888999999999999999999988763 44667777777744 4455 999999999987753 357888
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+..+...+...|++++|..+|++.. ... ..+...|..+...|...|+.++|..
T Consensus 113 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 113 RFRLGVALDNLGRFDEAIDSFKIAL-GLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999988 554 3456788899999999999999865
No 49
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.19 E-value=8.4e-05 Score=63.64 Aligned_cols=125 Identities=14% Similarity=0.090 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL------NFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN-- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~------g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~-- 95 (295)
.|..+-..|...|++++|+..|+++.+. +-.| ...+|..+-..+...+. +++|...|++..+.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLCKRALEIRE 142 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHHHH
Confidence 8888999999999999999999998754 3233 45566666665555553 99999999988763
Q ss_pred ----CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc------CCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 96 ----NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEF------NVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 96 ----g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~------gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+- +....+|..+...|...|++++|.++|++.. .. +-.|+ ..++..+...|...|+.++|..
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL-EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 2345678889999999999999999999987 43 22333 3468888899999999999987
No 50
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.18 E-value=0.00013 Score=63.60 Aligned_cols=155 Identities=8% Similarity=0.053 Sum_probs=118.7
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HH-hHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLS-LH-HFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~-ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
..|+. .|..+...+.+.|++++|..+|+++.+ +.|+ .. .|..+..++ ..++ +++|..+|+...+
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~a~~ 162 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEG---------IKSGRMIFKKARE 162 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHT
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcC---------HHHHHHHHHHHHh
Confidence 35554 899999999999999999999999987 3554 32 788888744 4455 9999999999987
Q ss_pred CCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------H----H---
Q 048764 95 NNVIPNEALVTSVARLAA-SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------E----Q--- 160 (295)
Q Consensus 95 ~g~~pd~~ty~~li~~~~-~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------e----~--- 160 (295)
.. +++...|........ ..|++++|..+|+... ... .-+...|..++..+.+.|+.++|.. . +
T Consensus 163 ~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 163 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGL-KKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH-HHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 54 244555655444432 3799999999999987 432 2245678888889999999999887 2 1
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 161 ---EITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 161 ---~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
-|..++....+.|+.+.|..+++++.+.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2777888888999999999999998764
No 51
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.16 E-value=5e-05 Score=63.92 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=95.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL------NFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN-- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~------g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~-- 95 (295)
.|..+-..|...|++++|+..|+++.+. +-.| ...+|..+-..+...+. +++|...|.+....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLCKRALEIRE 116 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998754 3233 44566666665555553 89999998887653
Q ss_pred ----C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc------CCCC-CcccHHHHHHHHHhcCCHHHhhc
Q 048764 96 ----N-VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 96 ----g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~------gi~P-~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
. -+....+|..+...|...|++++|..+|++.. .. +-.| ...+|..+-..|...|+.++|..
T Consensus 117 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL-EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 1 12346788999999999999999999999987 43 1123 24567788888888999888877
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.15 E-value=0.0004 Score=58.42 Aligned_cols=151 Identities=13% Similarity=0.021 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC--HHHH
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN--EALV 104 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd--~~ty 104 (295)
-..-..+.+.|++++|+.+|+++.+.. +-+...+..+...+...+. +++|...|+...+.+-.|+ ..+|
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAK--------YDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTC--------HHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhccCchhHHHHHH
Confidence 334456778888889988888887653 2344466666664444442 8888888888877432222 3457
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
..+-..|...|++++|...|+... ... ..+...|..+-..|...|+.++|.. ...|..+-..+...
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 155 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAV-DRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN 155 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-hcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 888888888888888888888887 443 2344678888888888888888887 11244444133345
Q ss_pred CCHHHHHHHHHHHHHc
Q 048764 173 GRVEKVYQYLQKLRST 188 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~ 188 (295)
+++++|...+.+..+.
T Consensus 156 ~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 156 KEYVKADSSFVKVLEL 171 (272)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5888888888887763
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=0.001 Score=56.37 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=122.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc----CCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSN----SATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~----~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
.+..+=..|.+.|++++|+..|.+..+.+ +...+..|-..+.. .+ .+++|...|++..+.+ +
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~--------~~~~A~~~~~~a~~~~---~ 73 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK--------NLKKAASFYAKACDLN---Y 73 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC--------CHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC--------CHHHHHHHHHHHHHCC---C
Confidence 66667777889999999999999998843 44556666555554 33 2999999999998876 7
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc----------HHHH
Q 048764 101 EALVTSVARLAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE----------EQEI 162 (295)
Q Consensus 101 ~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~----------e~~y 162 (295)
..++..+-..|.. .+++++|+..|+... ..+ +...+..+-..|.. .++.++|.. ...+
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~ 149 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGC 149 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHH
Confidence 7888999999999 999999999999998 665 66778888888888 999999988 2225
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 163 TALLKVSAG----TGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 163 ~~ll~~~~~----~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..+-..+.. .++.++|...+++..+.+ ++..+..+-..+
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 192 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMY 192 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 556666666 899999999999987753 334444443334
No 54
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.11 E-value=0.00016 Score=67.25 Aligned_cols=167 Identities=9% Similarity=-0.023 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
..|..+-..|.+.|++++|+..|+++.+.. +.+..+|..+-..+...+. +++|...|++..+.. +.+..+
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~ 346 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD--------YKNAKEDFQKAQSLN-PENVYP 346 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCSHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhC-CCCHHH
Confidence 477778888899999999999999888654 3456677777775544442 999999999987743 234678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HHH----------HHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQE----------ITAL 165 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~~----------y~~l 165 (295)
|..+...|...|++++|..+|++.. ... ..+...|..+...|...|+.++|.. .+. +..+
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETK-LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 8889999999999999999999988 543 3345578888889999999999888 111 2233
Q ss_pred HHHHHhc----------CCHHHHHHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 166 LKVSAGT----------GRVEKVYQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 166 l~~~~~~----------g~~~~a~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
-..+... |++++|..++++.... .|+ ...+..+...+
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLK 472 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3456666 9999999999998764 343 34455554444
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.03 E-value=0.0011 Score=54.49 Aligned_cols=123 Identities=15% Similarity=0.026 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
..|...=..+.+.|++++|+..|++..+..-+++...+..+-..+...+. +++|...|+...+... -+..+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~p-~~~~~ 78 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKK--------YKEAADYFDIAIKKNY-NLANA 78 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTC-SHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhc--------HHHHHHHHHHHHHhCc-chHHH
Confidence 36666677788999999999999999877644677666665554444442 9999999999887432 25678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc--------ccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL--------RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~--------~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|..+-..|...|++++|...|++.. .. .|+. ..|..+-..+...|+.++|..
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGI-KA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH-HH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH
Confidence 8889999999999999999999987 43 3543 345666667778888888887
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.03 E-value=0.00025 Score=51.62 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...+. +++|..+|+++.... +.+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 80 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELD-PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhC-CccHHHH
Confidence 78888899999999999999999998763 4456777777775554442 999999999998753 3577899
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
..+...|...|++++|..+|+++. ..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~-~~ 106 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKAL-EL 106 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH-Hh
Confidence 999999999999999999999988 54
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.99 E-value=0.00013 Score=68.00 Aligned_cols=150 Identities=10% Similarity=0.063 Sum_probs=123.1
Q ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHhHHHHHHH-HHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDL-ATAISLYESALSLNFRLSLHHFNALLYL-CSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~-~~A~~lf~~m~~~g~~pd~~ty~~ll~~-~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+=..|...|++ ++|+..|++..+.. +-+...|..|-.. +..++ +++|...|+...+.. |+..
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~---------~~~A~~~~~~al~~~--p~~~ 171 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGD---------VTSAHTCFSGALTHC--KNKV 171 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHTTC--CCHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhhC--CCHH
Confidence 777788889999999 99999999988763 3356777777774 44555 999999999998754 7788
Q ss_pred HHHHHHHHHHcC---------CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc--------CCHHHhhc-------
Q 048764 103 LVTSVARLAASK---------KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCEN--------LEAQKAYE------- 158 (295)
Q Consensus 103 ty~~li~~~~~~---------g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~--------g~~~~A~~------- 158 (295)
+|..+-..|... |++++|...|++.. ... .-+...|..+-.+|... |+.++|..
T Consensus 172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 999999999999 99999999999988 543 23466788888888888 88998888
Q ss_pred -HH---H----HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 -EQ---E----ITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 -e~---~----y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.+ . |..+-.+|...|++++|...+++..+.
T Consensus 250 ~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 250 VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 2 777888899999999999999998764
No 58
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.99 E-value=0.00047 Score=64.82 Aligned_cols=152 Identities=11% Similarity=0.119 Sum_probs=112.6
Q ss_pred HHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCTK-------SKDLA-------TAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~~-------~g~~~-------~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.|......+.+ .|+++ +|..+|++..+.-.+-+...|..+..++...+. +++|..+|+
T Consensus 274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~--------~~~A~~~~~ 345 (530)
T 2ooe_A 274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK--------YEKVHSIYN 345 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC--------HHHHHHHHH
Confidence 56666666654 68877 899999998763234457788888886555442 999999999
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHH-HHHHhcCCHHHhhc--------
Q 048764 91 QMLSNNVIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPAL-FCFCENLEAQKAYE-------- 158 (295)
Q Consensus 91 ~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll-~~~~~~g~~~~A~~-------- 158 (295)
...+. .|+ ...|...+..+.+.|++++|..+|+... .. .|+ ...|.... -.+...|+.++|..
T Consensus 346 ~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al-~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 346 RLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-ED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH-hc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 99883 454 3589999999999999999999999987 43 343 22222211 12336899998888
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcc
Q 048764 159 ----EQEITALLKVSAGTGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 159 ----e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~ 189 (295)
...|..+++.+.+.|+.++|..+|++.....
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2237888888999999999999999988753
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.93 E-value=0.00047 Score=57.98 Aligned_cols=152 Identities=9% Similarity=-0.025 Sum_probs=111.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS--LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+-..|.+.|++++|+..|+++.+.+-.|+ ...|..+-..+...+. +++|...|+...+.. +.+..
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~ 109 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ--------DSLAIQQYQAAVDRD-TTRLD 109 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCTH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhcC-cccHH
Confidence 788888899999999999999999988442222 2236666665544442 999999999988743 23567
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE------------EQEITALLKVS 169 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~ 169 (295)
+|..+...|...|++++|...|++.. .. .|+. ..|..+-..+...++.++|.. ...|..+-..+
T Consensus 110 ~~~~l~~~~~~~~~~~~A~~~~~~al-~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 110 MYGQIGSYFYNKGNFPLAIQYMEKQI-RP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARAN 186 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHGGGC-CS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHh-hc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 89999999999999999999999988 54 4544 444444425555669998888 11245566666
Q ss_pred HhcCC---HHHHHHHHHHHHHc
Q 048764 170 AGTGR---VEKVYQYLQKLRST 188 (295)
Q Consensus 170 ~~~g~---~~~a~~ll~~m~~~ 188 (295)
...|+ .++|...+.+..+.
T Consensus 187 ~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 187 AAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHcCcchhhHHHHHHHHHHHHH
Confidence 66677 77788888887664
No 60
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.89 E-value=8.8e-05 Score=62.36 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=104.7
Q ss_pred HhcCCHHHHHHHHHHHHh-------cCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC------CC-CC
Q 048764 34 TKSKDLATAISLYESALS-------LNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN------NV-IP 99 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~------g~-~p 99 (295)
...|++++|+.+|++..+ ...+....++..+-..+...+. +++|...|++..+. +- +.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~ 83 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------YKEAAHLLNDALAIREKTLGKDHPA 83 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHHHHcCCcchH
Confidence 445666666666666553 2223345566666665544442 99999999988753 22 23
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc------CCCC-CcccHHHHHHHHHhcCCHHHhhc------H-------
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMNNEF------NVVP-RLRTYDPALFCFCENLEAQKAYE------E------- 159 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~------gi~P-~~~ty~~ll~~~~~~g~~~~A~~------e------- 159 (295)
...+|..+...|...|++++|..+|.+.. .. .-.| ...+|..+-..|...|+.++|.. .
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 46689999999999999999999999887 33 1123 35678888889999999999988 1
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 160 -------QEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 160 -------~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
..|..+-..+...|++++|..++.+....
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11667778888999999999999988653
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=97.78 E-value=0.00019 Score=66.97 Aligned_cols=155 Identities=10% Similarity=-0.049 Sum_probs=119.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+-..|.+.|++++|+..|++..+.. |+...+..+-.++... ......+.|.+++|...|++..+.. +-+...
T Consensus 139 a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 215 (474)
T 4abn_A 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRS 215 (474)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 88899999999999999999999998764 7766666666666554 1111112246999999999988743 345888
Q ss_pred HHHHHHHHHcC--------CCHHHHHHHHHHhhhhcCCCC----CcccHHHHHHHHHhcCCHHHhhc------------H
Q 048764 104 VTSVARLAASK--------KDSDYAFELIKRMNNEFNVVP----RLRTYDPALFCFCENLEAQKAYE------------E 159 (295)
Q Consensus 104 y~~li~~~~~~--------g~~~~A~~l~~~M~~~~gi~P----~~~ty~~ll~~~~~~g~~~~A~~------------e 159 (295)
|..+-.+|... |++++|+..|++.. .. .| +...|..+-..|...|+.++|.. .
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAE-KV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHH-Hh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999988 99999999999988 54 35 67788999999999999999988 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 160 QEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 160 ~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
..+..+-..+...|++++|...+.++
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22666667777778888887655443
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.76 E-value=0.0011 Score=52.53 Aligned_cols=122 Identities=11% Similarity=0.028 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..|.+.|++++|+..+....... +-+...+..+-..+..... ++.|...+....... +-+..++
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~a~~~~-~~~~~~~ 110 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDE--------KQAAIDALQRAIALN-TVYADAY 110 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-ccchHHH
Confidence 88888999999999999999999987654 2334445544444444442 999999999887643 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..+-..|.+.|++++|++.|++.. ... .-+..+|..+-..|.+.|+.++|..
T Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~~l-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 111 YKLGLVYDSMGEHDKAIEAYEKTI-SIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCchhHHHHHHHHH-Hhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999988 543 3345678889999999999999976
No 63
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.76 E-value=0.0013 Score=56.69 Aligned_cols=155 Identities=6% Similarity=-0.041 Sum_probs=108.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHH----hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN-FRLSLH----HFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-I 98 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g-~~pd~~----ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~ 98 (295)
.+...+..+...|++++|..++++..+.. ..|+.. .|..+...+...+. +++|...|++...... .
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------YEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSC--------HHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccC--------HHHHHHHHHHHHHHhccc
Confidence 44455788999999999999999988643 234422 22233334433332 9999999999987322 2
Q ss_pred CC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hc-CCCCCc-ccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 99 PN----EALVTSVARLAASKKDSDYAFELIKRMNN---EF-NVVPRL-RTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 99 pd----~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~-gi~P~~-~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
+| ..+|+.+-..|...|++++|..+|++... .. +..|.. .+|..+-..|.+.|+.++|..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33 34799999999999999999999998872 11 222222 367788888999999999988
Q ss_pred -------HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTG-RVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g-~~~~a~~ll~~m~~ 187 (295)
...|..+-.++.+.| ..++|...+++...
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 112566666777788 46888888887543
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.75 E-value=0.0013 Score=61.83 Aligned_cols=154 Identities=8% Similarity=0.058 Sum_probs=114.9
Q ss_pred CcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 21 NPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSL--HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 21 ~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~--~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.|+. .|..+...+.+.|++++|..+|+.+.+. .|+. ..|..+..+..+.+ .+++|+.+|+...+..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAE--------GIKSGRMIFKKAREDA 386 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTCT
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcc
Confidence 4543 8999999999999999999999999874 5542 46777777444333 3999999999988752
Q ss_pred CCCCHHHHHHHHHH-HHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc-----------HH---
Q 048764 97 VIPNEALVTSVARL-AASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE-----------EQ--- 160 (295)
Q Consensus 97 ~~pd~~ty~~li~~-~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~-----------e~--- 160 (295)
- .+...|-..... +...|++++|..+|+... ... | +...|..++..+.+.|+.++|.. .+
T Consensus 387 ~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al-~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~ 462 (530)
T 2ooe_A 387 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL-KKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 462 (530)
T ss_dssp T-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH-HHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGC
T ss_pred C-CchHHHHHHHHHHHHHcCChhHHHHHHHHHH-HHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHH
Confidence 1 222333322222 335899999999999887 432 5 45678888888999999998887 11
Q ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 161 --EITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 161 --~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
-|...+......|+.+.+..+..++.+.
T Consensus 463 ~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 463 GEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3777788888899999999999998764
No 65
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.75 E-value=0.00082 Score=49.18 Aligned_cols=116 Identities=11% Similarity=0.018 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|++..... +.+...+..+-..+...+. +++|...|+...... +.+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~ 83 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGN--------YAGAVQDCERAICID-PAYSKAY 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhc--------hHHHHHHHHHHHhcC-ccCHHHH
Confidence 88888899999999999999999988653 3456677777665544442 999999999987743 3457889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLE 152 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~ 152 (295)
..+...|...|++++|...|+... ... ..+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~~~-~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKAL-ELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH-hcC-ccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999987 543 2244556666666666554
No 66
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.72 E-value=0.00087 Score=63.57 Aligned_cols=122 Identities=7% Similarity=-0.072 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..|.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|++..+.. +-+...|
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 94 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQR--------HAEAAVLLQQASDAA-PEHPGIA 94 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 55666666666666666666666665542 2234445444443333332 666666666665532 2245566
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhc---CCHHHhhc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCEN---LEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~---g~~~~A~~ 158 (295)
..+-..|...|++++|.+.|++.. ... .-+...|..+...+... |+.++|..
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAH-QLL-PEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 666666666666666666666665 332 11233444444444444 44444433
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.72 E-value=0.0047 Score=51.91 Aligned_cols=156 Identities=10% Similarity=0.026 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS---LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IP 99 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~p 99 (295)
.+-.+-..+.+.|++++|+..|+++.+.. +-+ ...+..+-. ++..++ +++|...|+...+... .|
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~---------~~~A~~~~~~~l~~~p~~~ 86 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKE---------YLLAASEYERFIQIYQIDP 86 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCc---------HHHHHHHHHHHHHHCCCCc
Confidence 44455566788999999999999998753 112 344444444 444455 9999999999987432 22
Q ss_pred C-HHHHHHHHHHHHc--------CCCHHHHHHHHHHhhhhcCCCCCc-ccH-----------------HHHHHHHHhcCC
Q 048764 100 N-EALVTSVARLAAS--------KKDSDYAFELIKRMNNEFNVVPRL-RTY-----------------DPALFCFCENLE 152 (295)
Q Consensus 100 d-~~ty~~li~~~~~--------~g~~~~A~~l~~~M~~~~gi~P~~-~ty-----------------~~ll~~~~~~g~ 152 (295)
+ ..++..+-..+.. .|++++|...|++.. .. .|+. ... ..+-..|.+.|+
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI-DR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERREL 163 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH-HH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH-HH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3 4567777778888 999999999999988 44 3543 233 334567788899
Q ss_pred HHHhhc--------HH-------HHHHHHHHHHhc----------CCHHHHHHHHHHHHHcccCCChh
Q 048764 153 AQKAYE--------EQ-------EITALLKVSAGT----------GRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 153 ~~~A~~--------e~-------~y~~ll~~~~~~----------g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
.++|.. .| .+..+-.++... |++++|...++++... .|+..
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~ 229 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSP 229 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCT
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCCh
Confidence 998888 11 144555556544 8889999999988764 45543
No 68
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.71 E-value=0.0016 Score=53.27 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=107.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHhHHH----------------HHHHHHcCCCCCCcchHHHHHHHHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLS-LHHFNA----------------LLYLCSNSATDPSLKDSALRHGFRVFDQM 92 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd-~~ty~~----------------ll~~~~~~~~~~~~~~~~~~~a~~lf~~M 92 (295)
-..+.+.|++++|+..|++..+. .|+ ...|.. +-..+...+. +++|...|++.
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~a 80 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------YDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------HHHHHHHHHHH
Confidence 34567899999999999998765 333 333433 4444444442 99999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHh--hc---------HH
Q 048764 93 LSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKA--YE---------EQ 160 (295)
Q Consensus 93 ~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A--~~---------e~ 160 (295)
.+.. +-+...|..+-..|...|++++|...|++.. .. .|+ ...|..+-..|...|+.+.+ .. ..
T Consensus 81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (208)
T 3urz_A 81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKIL-QL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156 (208)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch
Confidence 8743 2468899999999999999999999999988 54 354 55677777777665543322 11 11
Q ss_pred HH--HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHH
Q 048764 161 EI--TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIED 202 (295)
Q Consensus 161 ~y--~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~ 202 (295)
.| ..+-.++...|++++|...|++..+ ..|+......+..
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 12 2222334557899999999999876 4677665555543
No 69
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.70 E-value=0.0022 Score=56.48 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=12.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.|++++.+.|++++|..+|+.+.
T Consensus 216 lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 216 GLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33445555566666666665443
No 70
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.69 E-value=0.0017 Score=47.81 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +.+...+..+-..+...+. +++|...|++..+.. +.+..+|
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLE--------FQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC-CCchHHH
Confidence 88889999999999999999999988653 3356667666665555543 999999999988743 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcC
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENL 151 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g 151 (295)
..+...|...|++++|...|++.. .. .|+ ...+..+-..+...|
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~-~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKAL-DL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-Hh--CCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999987 44 343 334455555554443
No 71
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.67 E-value=0.0014 Score=53.14 Aligned_cols=140 Identities=9% Similarity=-0.027 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+-..+.+.|++++|+..|++. +.|+...|..+-..+...+. +++|...|++..+.. +.+..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-~~~~~~~ 74 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKN--------MTEAEKAFTRSINRD-KHLAVAY 74 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-ccchHHH
Confidence 3445566778899999999999877 46678888888885544442 999999999987743 3567889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---HHHHHHHHHHHHhcCCHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---EQEITALLKVSAGTGRVEKVYQY 181 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---e~~y~~ll~~~~~~g~~~~a~~l 181 (295)
..+-..|...|++++|...|+... ... |+..... +...|. ... ...|..+-.++...|++++|...
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al-~~~--~~~~~~~-----~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEAL-IQL--RGNQLID-----YKILGL---QFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HTT--TTCSEEE-----CGGGTB---CCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH-HhC--CCccHHH-----HHHhcc---ccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999999999999988 432 3211000 000000 000 11256666778888999999999
Q ss_pred HHHHHHc
Q 048764 182 LQKLRST 188 (295)
Q Consensus 182 l~~m~~~ 188 (295)
+++....
T Consensus 144 ~~~al~~ 150 (213)
T 1hh8_A 144 LALATSM 150 (213)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 9887764
No 72
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.63 E-value=0.0088 Score=49.26 Aligned_cols=101 Identities=15% Similarity=0.086 Sum_probs=64.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC-HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCCH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNF-RLS-LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPNE 101 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd-~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd~ 101 (295)
+-.+-..+.+.|++++|+..|+++.+..- .|. ...+..+-. ++..++ +++|...|+...+... .|..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~---------~~~A~~~~~~~l~~~P~~~~~ 77 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD---------LPLAQAAIDRFIRLNPTHPNI 77 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHHCcCCCcH
Confidence 33444568889999999999999986531 121 234444555 445555 9999999999987432 2221
Q ss_pred -HHHHHHHHHHH------------------cCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 102 -ALVTSVARLAA------------------SKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 102 -~ty~~li~~~~------------------~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
..+-.+-..+. ..|++++|...|++.. .. -|+..
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l-~~--~P~~~ 130 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLV-RG--YPNSQ 130 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH-TT--CTTCT
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHH-HH--CcCCh
Confidence 13333333333 3678999999999988 43 46654
No 73
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.63 E-value=0.0024 Score=57.95 Aligned_cols=171 Identities=11% Similarity=0.083 Sum_probs=128.7
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCC-CCCCcchHHHHHHHHHHHHHHhCC
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSA-TDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~-~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
..|+. .|..+-..+.+.|++++|+..|+++.+.. +-+...|+.+-.++...+ . +++|+..|++..+..
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d--------~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKD--------LHEEMNYITAIIEEQ 162 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHC
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccC--------HHHHHHHHHHHHHHC
Confidence 44554 78888888999999999999999998753 335566666666554444 2 999999999998843
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHH
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITA 164 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ 164 (295)
- -+...|+.+-.++...|++++|+..|+... ... .-+...|..+-.++.+.|+.++|+. ...|+.
T Consensus 163 P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal-~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~ 239 (382)
T 2h6f_A 163 P-KNYQVWHHRRVLVEWLRDPSQELEFIADIL-NQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQ 239 (382)
T ss_dssp T-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 2 367899999999999999999999999998 554 3355678888889999999998888 223777
Q ss_pred HHHHHHh-cCCHHHH-----HHHHHHHHHcccCCC-hhHHHHHHHHH
Q 048764 165 LLKVSAG-TGRVEKV-----YQYLQKLRSTVRCVN-EETGKIIEDWF 204 (295)
Q Consensus 165 ll~~~~~-~g~~~~a-----~~ll~~m~~~~~~p~-~~t~~~l~~~~ 204 (295)
+-.++.. .|..++| +..+++... ..|+ ...|..+...+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll 284 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIK--LVPHNESAWNYLKGIL 284 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 7777777 6665777 477777665 3565 45566665555
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.61 E-value=0.0013 Score=56.85 Aligned_cols=152 Identities=10% Similarity=0.101 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHhC---
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLSN--- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~~--- 95 (295)
+|+.+-..|.+.|++++|+..|++..+. |-... ..+|+.+-.++... + .+++|...|++..+.
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--------~~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--------DYAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHHHHHh
Confidence 7777778888888888888888776532 21111 34566666655542 3 288999999887652
Q ss_pred -CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc------cHHHHHHHHHhcCCHHHhhc--------H
Q 048764 96 -NVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR------TYDPALFCFCENLEAQKAYE--------E 159 (295)
Q Consensus 96 -g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~------ty~~ll~~~~~~g~~~~A~~--------e 159 (295)
+-.+. ..+|+.+...|...|++++|+..|++.. ......... +|..+..++...|+.++|.. .
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI-KSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED 229 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 11111 3578899999999999999999999988 543222222 45667778889999999887 2
Q ss_pred HH---------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 048764 160 QE---------ITALLKVSA--GTGRVEKVYQYLQKL 185 (295)
Q Consensus 160 ~~---------y~~ll~~~~--~~g~~~~a~~ll~~m 185 (295)
|. +..|+.++. ..+++++|...++++
T Consensus 230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 22 233455553 345677777666554
No 75
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=97.61 E-value=0.0027 Score=57.54 Aligned_cols=165 Identities=9% Similarity=0.066 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKD-LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|+.+-..+.+.|+ +++|+..|+++.+.. +-+...|+.+-.++...+. +++|...|+...+.. +-|...
T Consensus 133 a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~--------~~eAl~~~~kal~ld-P~~~~a 202 (382)
T 2h6f_A 133 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD--------PSQELEFIADILNQD-AKNYHA 202 (382)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-ccCHHH
Confidence 88888888999996 999999999998764 3356677776664444332 889999999998743 247889
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh-cCCHHHhh-----c------------HHHHHHH
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE-NLEAQKAY-----E------------EQEITAL 165 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~-~g~~~~A~-----~------------e~~y~~l 165 (295)
|..+-.++...|++++|+..|+++. ... .-+...|+.+-.+|.+ .|..++|. . ...|+.+
T Consensus 203 ~~~lg~~~~~~g~~~eAl~~~~~al-~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l 280 (382)
T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLL-KED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYL 280 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999999998 654 2345678888888888 66646663 2 2237777
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHcccCCCh-hHHHHHHHHH
Q 048764 166 LKVSAGTG--RVEKVYQYLQKLRSTVRCVNE-ETGKIIEDWF 204 (295)
Q Consensus 166 l~~~~~~g--~~~~a~~ll~~m~~~~~~p~~-~t~~~l~~~~ 204 (295)
-..+...| ++++|.+++.++ ...|+. ..+..+...+
T Consensus 281 ~~ll~~~g~~~~~~a~~~~~~~---~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 281 KGILQDRGLSKYPNLLNQLLDL---QPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHTTTCGGGCHHHHHHHHHH---TTTCCCHHHHHHHHHHH
T ss_pred HHHHHccCccchHHHHHHHHHh---ccCCCCHHHHHHHHHHH
Confidence 77788877 689999999887 234443 3444444444
No 76
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.60 E-value=0.008 Score=51.64 Aligned_cols=154 Identities=7% Similarity=-0.041 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-H----HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC---
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS-L----HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN--- 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd-~----~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g--- 96 (295)
.+...+..+...|++++|+..+.+..+.....+ . ..+..+...+...+. +++|...|++..+..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------YEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--------HHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHHHhcC
Confidence 455677888999999999999998876542221 1 112222223344332 999999999887532
Q ss_pred CCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-----cccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 97 VIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-----LRTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 97 ~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-----~~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
..+. ..+|+.+-..|...|++++|..+|++........|+ ..+|..+-..|.+.|+.++|..
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 1222 458999999999999999999999987621112233 2578888889999999999998
Q ss_pred -------HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTGRVEKV-YQYLQKLR 186 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g~~~~a-~~ll~~m~ 186 (295)
...|..+-..+.+.|+.++| ...+++-.
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 11256666778888999999 77677643
No 77
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.55 E-value=0.0017 Score=49.91 Aligned_cols=130 Identities=12% Similarity=-0.003 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+...|++++|+..|++..+.. +.+..++..+-..+...+. +++|...|+...+.. +.+..+|
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 84 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cccHHHH
Confidence 67778888999999999999999988653 3456667666665554442 999999999987743 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc-cHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR-TYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~-ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
..+...+...|++++|...|++.. ... |+.. .+. +-.+...+...|++++|..++.
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~-~~~--p~~~~~~~--------------------~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVV-KVK--PHDKDAKM--------------------KYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHS--TTCHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH-HhC--CCCHHHHH--------------------HHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999988 443 4322 211 1122223445677777777776
Q ss_pred HHHH
Q 048764 184 KLRS 187 (295)
Q Consensus 184 ~m~~ 187 (295)
....
T Consensus 142 ~~~~ 145 (166)
T 1a17_A 142 HKRS 145 (166)
T ss_dssp HHHH
T ss_pred chHH
Confidence 6543
No 78
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.55 E-value=0.0019 Score=51.52 Aligned_cols=147 Identities=10% Similarity=-0.037 Sum_probs=86.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CCCCC-CHHHHHHHH
Q 048764 34 TKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NNVIP-NEALVTSVA 108 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g~~p-d~~ty~~li 108 (295)
...|++++|..+++.+... ......++..+-..+...+. +++|...|++... .+..| ...+++.+-
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 73 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDR--------FDEARASFQALQQQAQKSGDHTAEHRALHQVG 73 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3467777777755444321 12234455555554443332 7777777776654 22222 345566777
Q ss_pred HHHHcCCCHHHHHHHHHHhhhh---cCCCC--CcccHHHHHHHHHhcCCHHHhhc------------------HHHHHHH
Q 048764 109 RLAASKKDSDYAFELIKRMNNE---FNVVP--RLRTYDPALFCFCENLEAQKAYE------------------EQEITAL 165 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~---~gi~P--~~~ty~~ll~~~~~~g~~~~A~~------------------e~~y~~l 165 (295)
..|...|++++|...|++.... .+-.| ....+..+-..+...|+.++|.. ...+..+
T Consensus 74 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 153 (203)
T 3gw4_A 74 MVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGL 153 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 7777788888888777765521 11111 12345666667777788777776 0014666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcc
Q 048764 166 LKVSAGTGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 166 l~~~~~~g~~~~a~~ll~~m~~~~ 189 (295)
-..+...|++++|...+.+.....
T Consensus 154 a~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 154 GDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHH
Confidence 777888999999999888866543
No 79
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.52 E-value=0.0024 Score=54.61 Aligned_cols=155 Identities=10% Similarity=-0.009 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN----N 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~----g 96 (295)
.+...-..+.+.|++++|+.+|+++.+.. +.+ ...|..+-..+...+. +++|...|++.... +
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~ 77 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHD--------YAKALEYHHHDLTLARTIG 77 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHhhccc
Confidence 44445567788899999999999988763 223 3455566664444442 88888888876441 2
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC----cccHHHHHHHHHhcCC-------------------
Q 048764 97 VIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR----LRTYDPALFCFCENLE------------------- 152 (295)
Q Consensus 97 ~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~----~~ty~~ll~~~~~~g~------------------- 152 (295)
-.| ...++..+...|...|++++|...|++......-.++ ..+|..+-..|...|+
T Consensus 78 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 78 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 122 2567788888888999999999998886521111122 3367777788888888
Q ss_pred -HHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 -AQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 -~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|++++|..++.+....
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 777766 012566677788889999998888886543
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.49 E-value=0.0028 Score=56.59 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=111.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
+++.+=..|...|++++|+..|++..+. +-.+. ..+|..+-..+...+. +++|...|++..+ .
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--------~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--------YEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhh
Confidence 7888888999999999999999987643 21111 2355555555544442 9999999998766 1
Q ss_pred CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCCcccHHHHHHHHHhcCC---HHHhhc----------
Q 048764 96 NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPRLRTYDPALFCFCENLE---AQKAYE---------- 158 (295)
Q Consensus 96 g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~~~ty~~ll~~~~~~g~---~~~A~~---------- 158 (295)
+. +....++..+-..|.+.|++++|...|++... ..+-......+..+-..|...|+ +++|+.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~ 337 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHH
Confidence 33 44567899999999999999999999998762 11111112335667777778888 666666
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...+..|-..|...|+.++|...+++...
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12366778889999999999999998655
No 81
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.48 E-value=0.0068 Score=48.85 Aligned_cols=77 Identities=10% Similarity=0.052 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|++. +.|+..+|..+...|...|++++|...|+... ... |+ ...|
T Consensus 22 ~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--~~~~~~~-------------------- 74 (213)
T 1hh8_A 22 WKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRD--KHLAVAY-------------------- 74 (213)
T ss_dssp HHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHH--------------------
T ss_pred HHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC--ccchHHH--------------------
Confidence 89999999876 35788899999999999999999999999887 443 43 2333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+-..+...|++++|...+++...
T Consensus 75 --~~lg~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 75 --FQRGMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3344445566666666666666554
No 82
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.48 E-value=0.00065 Score=60.87 Aligned_cols=155 Identities=12% Similarity=-0.058 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHcCCCCCCcchHH-----------------H
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRL-SLHHFNALLYLCSNSATDPSLKDSA-----------------L 82 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~-----------------~ 82 (295)
.|..+-..|...|++++|+..|+++.+. +-.| ...+|..+-..+...+ . +
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG--------KHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH--------HHHHHHSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC--------cccccccchhhhhhhhHHH
Confidence 7777788888888888888888876543 1112 2234444444333333 4 6
Q ss_pred HHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCC----cccHHHHHHHHHhcCC
Q 048764 83 RHGFRVFDQMLS----NNVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPR----LRTYDPALFCFCENLE 152 (295)
Q Consensus 83 ~~a~~lf~~M~~----~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~----~~ty~~ll~~~~~~g~ 152 (295)
++|...|++..+ .+-.| ...+|..+-..|...|++++|..+|++.. ...- .++ ..+|..+...|...|+
T Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 778777776543 11112 23578888899999999999999999876 3210 112 2378888889999999
Q ss_pred HHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 AQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 ~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|++++|..++++....
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999988 012667778889999999999999987654
No 83
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.46 E-value=0.0012 Score=56.53 Aligned_cols=155 Identities=14% Similarity=0.047 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHH-HcCCCCCCcc
Q 048764 25 NFLISLQSCTKSKD--------------------LATAISLYESALSL----NFRLS-LHHFNALLYLC-SNSATDPSLK 78 (295)
Q Consensus 25 t~~~li~~~~~~g~--------------------~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~-~~~~~~~~~~ 78 (295)
.|..+-..|...|+ +++|+..|++.... +..|. ..++..+-..+ ..+.
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------ 198 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN------ 198 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC------
Confidence 78888888999999 99999999876532 22222 33555555544 4444
Q ss_pred hHHHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC----cccHHHHHHHHHh
Q 048764 79 DSALRHGFRVFDQMLSN----NVI-PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR----LRTYDPALFCFCE 149 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~----g~~-pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~----~~ty~~ll~~~~~ 149 (295)
+++|...|++..+. +.. ....++..+...+...|++++|..+|++......-.++ ..++..+-..|..
T Consensus 199 ---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 199 ---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 88999999887652 111 11347888999999999999999999987621110112 4567788888999
Q ss_pred cCCHHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 150 NLEAQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 150 ~g~~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.|+.++|.. ...|..+-..+.+.|++++|..++++....
T Consensus 276 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999988 012667778888999999999999987663
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.43 E-value=0.0052 Score=50.38 Aligned_cols=123 Identities=8% Similarity=-0.046 Sum_probs=95.9
Q ss_pred CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 57 SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 57 d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
|...+..+-. +...++ +++|...|+...+..-+++...+..+-..+...|++++|+..|+... .. .|
T Consensus 6 ~~~~~~~~g~~~~~~~~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~--~p 73 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKN---------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI-KK--NY 73 (228)
T ss_dssp CHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--TC
T ss_pred CHHHHHHHHHHHHHccC---------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-Hh--Cc
Confidence 4445555545 444555 99999999999886654788888889999999999999999999987 44 35
Q ss_pred -CcccHHHHHHHHHhcCCHHHhhc--------H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC
Q 048764 136 -RLRTYDPALFCFCENLEAQKAYE--------E-----------QEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 136 -~~~ty~~ll~~~~~~g~~~~A~~--------e-----------~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
+...|..+-..|...|+.++|.. . ..|..+=..+...|++++|...+.+..+. .|+
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 149 (228)
T 4i17_A 74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSK 149 (228)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCC
Confidence 45678888899999999999998 1 12555666678899999999999998764 454
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.42 E-value=0.002 Score=55.68 Aligned_cols=154 Identities=7% Similarity=-0.046 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|+.....|...|++++|+..|.+..+. |-+++ ..+|+.+-.++...+. +++|...|+.-.+ .
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------SVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHc
Confidence 7888899999999999999999987643 33333 4677777776666543 8888888887654 2
Q ss_pred CCCC-CHHHHHHHHHHHHcC-CCHHHHHHHHHHhhhhcCC-CCC----cccHHHHHHHHHhcCCHHHhhc----------
Q 048764 96 NVIP-NEALVTSVARLAASK-KDSDYAFELIKRMNNEFNV-VPR----LRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 96 g~~p-d~~ty~~li~~~~~~-g~~~~A~~l~~~M~~~~gi-~P~----~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
|-.+ -..+|+.+-..|... |++++|+..|++.. ...- ..+ ..+|+.+-..|.+.|+.++|..
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAG-EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 2111 145788899999996 99999999999876 3210 011 3467888889999999999988
Q ss_pred ---HH------HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 ---EQ------EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 ---e~------~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.. .|..+..++...|++++|...+++...
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 10 245566678889999999999998654
No 86
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.42 E-value=0.00092 Score=59.87 Aligned_cols=153 Identities=10% Similarity=-0.001 Sum_probs=109.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhC----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSL----HHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSN---- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~----~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~---- 95 (295)
.+..+-..+...|++++|+.+|+++.+.. +.+. ..|..+-..+ ..++ +++|...|++..+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~~~~ 119 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGD---------YNKAMQYHKHDLTLAKSM 119 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHc
Confidence 55566678899999999999999998763 2232 3555555544 4455 88999988887552
Q ss_pred CC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc----CCCC-CcccHHHHHHHHHhcCC-----------------
Q 048764 96 NV-IPNEALVTSVARLAASKKDSDYAFELIKRMNNEF----NVVP-RLRTYDPALFCFCENLE----------------- 152 (295)
Q Consensus 96 g~-~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~----gi~P-~~~ty~~ll~~~~~~g~----------------- 152 (295)
+- +....+|..+-..|...|++++|...|++.. .. +-.| ...+|..+-..|...|+
T Consensus 120 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 120 NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 21 2345678888889999999999999998876 32 1112 23467778888888999
Q ss_pred HHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 AQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 ~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|++++|..++.+....
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 888877 012666777788889999999988887553
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.40 E-value=0.0055 Score=54.67 Aligned_cols=154 Identities=10% Similarity=0.054 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
+++.+=..|...|++++|+..|++..+. +-.+ ...+++.|-..+...+. +++|...|++..+ .
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--------DQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhh
Confidence 8888888999999999999999987643 2111 12344444444443332 8899999988766 1
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC---CC-cccHHHHHHHHHhcCC---HHHhhc----------
Q 048764 96 NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV---PR-LRTYDPALFCFCENLE---AQKAYE---------- 158 (295)
Q Consensus 96 g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~---P~-~~ty~~ll~~~~~~g~---~~~A~~---------- 158 (295)
+.+....++..+-..|.+.|++++|..+|++.. ...-. |. ...+..+-..|...|+ +.+|+.
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~ 334 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL-DHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAY 334 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhH
Confidence 223337788999999999999999999999887 43211 21 2234445555556777 666666
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...+..+-..|...|+.++|...+++...
T Consensus 335 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 335 IEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11256777889999999999999998754
No 88
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.38 E-value=0.0029 Score=46.19 Aligned_cols=106 Identities=8% Similarity=0.024 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCC--CCC-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNV--IPN- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~--~pd- 100 (295)
.|..+-..+...|++++|+..|++..... +.+...+..+-..+ ..+. +++|...|+....... .++
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD---------YNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHhhccccchhH
Confidence 77888889999999999999999988764 44566676666644 4455 9999999999877321 233
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHH
Q 048764 101 ---EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPA 143 (295)
Q Consensus 101 ---~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~l 143 (295)
..+|..+...|...|++++|...|+... .. .|+......+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~--~~~~~~~~~l 118 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSL-AE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-Hh--CCCHHHHHHH
Confidence 7788899999999999999999999988 54 3554444433
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.38 E-value=0.0032 Score=54.32 Aligned_cols=117 Identities=10% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH-HHHhcCCHHHhhc--
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF-CFCENLEAQKAYE-- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~-~~~~~g~~~~A~~-- 158 (295)
+++|..+|++..+.. +-+...+..+...+...|++++|..+|+... .. .|+......... .+...++.+.|..
T Consensus 133 ~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~-~~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l 208 (287)
T 3qou_A 133 YTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIP-LQ--DQDTRYQGLVAQIELLXQAADTPEIQQL 208 (287)
T ss_dssp HHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC-GG--GCSHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCc-hh--hcchHHHHHHHHHHHHhhcccCccHHHH
Confidence 667777777665532 1245566666667777777777777777665 32 243322211111 1333333333322
Q ss_pred ----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCC---hhHHHHHHHHH
Q 048764 159 ----------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVN---EETGKIIEDWF 204 (295)
Q Consensus 159 ----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~---~~t~~~l~~~~ 204 (295)
...+..+-..+...|++++|...+.++... .|+ ...+..+...|
T Consensus 209 ~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 209 QQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHH
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHH
Confidence 112556666677777888887777777664 233 23445555555
No 90
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.38 E-value=0.0033 Score=55.67 Aligned_cols=155 Identities=10% Similarity=-0.009 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NN 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g 96 (295)
.+...=..+.+.|++++|+..|+++.+.. +.+ ...|..+-..+...+. +++|...|++... .+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~ 81 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHD--------YAKALEYHHHDLTLARTIG 81 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHhcc
Confidence 55666677888999999999999888763 223 2455555554444332 8888888887644 22
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC----cccHHHHHHHHHhcCC-------------------
Q 048764 97 VIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR----LRTYDPALFCFCENLE------------------- 152 (295)
Q Consensus 97 ~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~----~~ty~~ll~~~~~~g~------------------- 152 (295)
-.| ...+|..+...|...|++++|...|++......-.++ ..+|..+-..|...|+
T Consensus 82 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 82 DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 222 2456777888888899999998888876521110112 3467777777888888
Q ss_pred -HHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 -AQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 -~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++|.. ...|..+-..+...|++++|...+.+....
T Consensus 162 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 162 ALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 777766 012566666677778888888877776543
No 91
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.31 E-value=0.01 Score=52.49 Aligned_cols=154 Identities=11% Similarity=0.025 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC--CC-HHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFR--LS-LHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~--pd-~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
++..+-..+...|++++|...|++..+. +.. |. ...+..+-..+ ..++ +++|...+++.....
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~ 165 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR---------LDEAEASARSGIEVL 165 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHHHHh
Confidence 4566777788999999999999987642 222 33 33444444444 4455 999999999876522
Q ss_pred ----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHH-----HHHHHHHhcCCHHHhhc--------
Q 048764 97 ----VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYD-----PALFCFCENLEAQKAYE-------- 158 (295)
Q Consensus 97 ----~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~-----~ll~~~~~~g~~~~A~~-------- 158 (295)
......+|..+...+...|++++|..++++.. ...-.++. ..+. ..+..+...|+.++|..
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE-NLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 11134678888899999999999999999886 43212222 1222 22344778999999877
Q ss_pred --------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 --------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 --------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...+..+...+...|+.++|..++.+....
T Consensus 245 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 112566778888999999999999987654
No 92
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.31 E-value=0.0022 Score=56.83 Aligned_cols=154 Identities=14% Similarity=0.064 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHH-cCCCCCCcc
Q 048764 25 NFLISLQSCTKSKD--------------------LATAISLYESALSL----NFRLS-LHHFNALLYLCS-NSATDPSLK 78 (295)
Q Consensus 25 t~~~li~~~~~~g~--------------------~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~-~~~~~~~~~ 78 (295)
.|..+-..|...|+ +++|+..|.+..+. +-.|. ..+|..+-..+. .+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------ 202 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN------ 202 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB------
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC------
Confidence 78888888999999 99999999876532 22222 234555555444 444
Q ss_pred hHHHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC-CCCC----cccHHHHHHHHH
Q 048764 79 DSALRHGFRVFDQMLSNN-VIPN----EALVTSVARLAASKKDSDYAFELIKRMNNEFN-VVPR----LRTYDPALFCFC 148 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g-~~pd----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g-i~P~----~~ty~~ll~~~~ 148 (295)
+++|...|++..+.. -.++ ..+|..+...|...|++++|...|++.. ... -.++ ..+|..+-..|.
T Consensus 203 ---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 203 ---FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhCcCchHHHHHHHHHHHHHH
Confidence 899999998876521 0122 3478889999999999999999999876 221 0111 457788888999
Q ss_pred hcCCHHHhhc------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 149 ENLEAQKAYE------------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 149 ~~g~~~~A~~------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
..|+.++|.. ...|..+-..+...|++++|...+.+....
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999988 012667777888999999999999986553
No 93
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.28 E-value=0.0077 Score=42.56 Aligned_cols=97 Identities=10% Similarity=-0.003 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC--CHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP--NEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p--d~~ 102 (295)
.|..+-..+.+.|++++|+..|++..+.. +.+...|..+-..+...+. +++|...|++..+.. +. +..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~ 77 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLER--------YEEAVDCYNYVINVI-EDEYNKD 77 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTS-CCTTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-cccchHH
Confidence 67777888999999999999999988764 3455666666664444442 999999999998753 23 588
Q ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHhhhhcC
Q 048764 103 LVTSVARLAASK-KDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 103 ty~~li~~~~~~-g~~~~A~~l~~~M~~~~g 132 (295)
+|..+...+... |++++|.+.|.... ...
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~-~~~ 107 (112)
T 2kck_A 78 VWAAKADALRYIEGKEVEAEIAEARAK-LEH 107 (112)
T ss_dssp HHHHHHHHHTTCSSCSHHHHHHHHHHG-GGC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHh-hcc
Confidence 999999999999 99999999999988 443
No 94
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.28 E-value=0.007 Score=43.56 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=68.6
Q ss_pred HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 58 LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
...|..+...+...+. +++|..+|+++.... +.+..+|..+...+...|++++|..+|+.+. ... ..+.
T Consensus 9 ~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~-~~~~ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGD--------YDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD-PNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCH
T ss_pred HHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhC-CccH
Confidence 4556666664444442 899999999987743 3467888889999999999999999999988 543 1222
Q ss_pred ccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 138 RTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 138 ~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.+ +..+...+...|++++|..+++++...
T Consensus 78 ~~----------------------~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 78 EA----------------------WYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HH----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH----------------------HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 23 344555667777788888888777653
No 95
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.27 E-value=0.018 Score=40.81 Aligned_cols=99 Identities=6% Similarity=-0.077 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+...+...|++++|+..|++..... +.+...+..+-..+ ..++ +++|...|++..+.. +.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~---------~~~A~~~~~~~~~~~-~~~~~~ 74 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD---------YQKAYEDGCKTVDLK-PDWGKG 74 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhcc---------HHHHHHHHHHHHHhC-cccHHH
Confidence 67778888999999999999999988653 33566666666644 4444 999999999987743 246788
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
|..+...+...|++++|...|+... .. .|+.
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~-~~--~~~~ 105 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGL-KH--EANN 105 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-TT--CTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH-Hc--CCCC
Confidence 9999999999999999999999987 43 4544
No 96
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.24 E-value=0.012 Score=45.64 Aligned_cols=102 Identities=14% Similarity=-0.015 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|+...+.. +-+...|
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~ 82 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQ--------HEKAAEDAELATVVD-PKYSKAW 82 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 78888889999999999999999988753 3356666666665544442 999999999988743 2357889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
..+-..|...|++++|...|++.. .. .|+...
T Consensus 83 ~~lg~~~~~~g~~~~A~~~~~~al-~~--~p~~~~ 114 (164)
T 3sz7_A 83 SRLGLARFDMADYKGAKEAYEKGI-EA--EGNGGS 114 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HH--HSSSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH-Hh--CCCchH
Confidence 999999999999999999999887 43 355443
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.23 E-value=0.0037 Score=55.04 Aligned_cols=120 Identities=10% Similarity=0.098 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP---- 99 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p---- 99 (295)
++-.+-..+...|++++|++++.+-...+- .-+...+..++.++...+. .+.|.++++.|.+. .|
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r--------~d~A~k~l~~~~~~--~~d~~~ 171 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN--------VSTASTIFDNYTNA--IEDTVS 171 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH--SCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhc--Cccccc
Confidence 445666777777888888888877665543 2345566666664433332 78888888888663 45
Q ss_pred -CHHHHHHHHHHHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 100 -NEALVTSVARLAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 100 -d~~ty~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
+..+..-|+.++.. .+++..|+.+|+++. .. .|+..+-..++.++.+.|++++|.
T Consensus 172 ~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~-~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 172 GDNEMILNLAESYIKFATNKETATSNFYYYEELS-QT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHH-TT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-Hh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 35666666655322 237888888888876 33 254444455666777788887773
No 98
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.23 E-value=0.0094 Score=44.62 Aligned_cols=106 Identities=12% Similarity=0.007 Sum_probs=83.8
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
..|+. .|...=..|.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|+...+.+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~- 77 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLME--------FQRALDDCDTCIRLD- 77 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhcc--------HHHHHHHHHHHHHhh-
Confidence 45665 78888888999999999999999988653 4466777777665554442 999999999987743
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+.+...|..+-.+|...|++++|.+.|+... .. .|+..
T Consensus 78 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~l--~P~~~ 115 (126)
T 4gco_A 78 SKFIKGYIRKAACLVAMREWSKAQRAYEDAL-QV--DPSNE 115 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCH
T ss_pred hhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH--CcCCH
Confidence 2457889999999999999999999999987 43 46644
No 99
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.19 E-value=0.018 Score=56.56 Aligned_cols=134 Identities=11% Similarity=0.093 Sum_probs=104.9
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
+...|+.|=.++...+. +++|...|++..+.. +-+..+|+.|-.+|.+.|++++|+..|++.. .. .|+
T Consensus 8 ~a~al~nLG~~~~~~G~--------~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l--~P~ 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGN--------IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAI-RI--SPT 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTT
T ss_pred cHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCC
Confidence 45677777775555443 999999999988742 2347889999999999999999999999987 54 465
Q ss_pred -cccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh-hHHHHHHH
Q 048764 137 -LRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE-ETGKIIED 202 (295)
Q Consensus 137 -~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~-~t~~~l~~ 202 (295)
...|..+-..|...|+.++|.. ...|+.|-..+...|++++|...+++..+. .|+. ..+..+..
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAH 153 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhh
Confidence 5678889999999999999988 223888888999999999999999998763 5654 34444444
Q ss_pred HH
Q 048764 203 WF 204 (295)
Q Consensus 203 ~~ 204 (295)
.+
T Consensus 154 ~l 155 (723)
T 4gyw_A 154 CL 155 (723)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.19 E-value=0.0024 Score=50.57 Aligned_cols=120 Identities=8% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+-..+.+.|++++|+..|++..+.. +-+...+..+-.++...+. +++|...|+...... |+...+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~--------~~~A~~~~~~a~~~~--p~~~~~ 76 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQ--------FELAQELLATIPLEY--QDNSYK 76 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTC--------HHHHHHHHTTCCGGG--CCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHhhhcc--CChHHH
Confidence 34445556667777777777777655431 2234444545443333332 777777777655422 233322
Q ss_pred HHHHHH-HHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARL-AASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~-~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..+... +...+....|...|+... .. .|+ ...+..+-..+...|+.++|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~al-~~--~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 77 SLIAKLELHQQAAESPELKRLEQEL-AA--NPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhcccchHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 221111 111122233556666555 32 243 3344444444444444444443
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.19 E-value=0.005 Score=60.04 Aligned_cols=145 Identities=12% Similarity=-0.021 Sum_probs=111.6
Q ss_pred HhcCCHHHHHHHHHHHHh-------cCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 34 TKSKDLATAISLYESALS-------LNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~-------~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
...|++++|+..|++..+ ..-+.+...|..+-. +...++ +++|...|++..+.. +-+...|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~a~~ 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGD---------VAKATRKLDDLAERV-GWRWRLVW 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHH-CCCHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCC---------HHHHHHHHHHHhccC-cchHHHHH
Confidence 788999999999999871 112334455666555 444555 999999999988743 24678899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT 172 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~ 172 (295)
.+-.+|...|++++|...|++.. ... | +...|..+-.+|.+.|+.++ .. ...|..+-.++.+.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al-~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~ 547 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVL-DTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAE 547 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH-HHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc
Confidence 99999999999999999999987 543 5 45668888888999999887 66 22377788889999
Q ss_pred CCHHHHHHHHHHHHHcccCCCh
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
|++++|...+++..+ ..|+.
T Consensus 548 g~~~~A~~~~~~al~--l~P~~ 567 (681)
T 2pzi_A 548 GDRVGAVRTLDEVPP--TSRHF 567 (681)
T ss_dssp TCHHHHHHHHHTSCT--TSTTH
T ss_pred CCHHHHHHHHHhhcc--cCccc
Confidence 999999999998754 34553
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.19 E-value=0.0037 Score=54.35 Aligned_cols=153 Identities=9% Similarity=0.044 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|+.....|...|++++|+..|.+..+. |-.+. ..+|+.+-..+...+. +++|...|++-.+ .
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR--------MPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------GGGGHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHHHc
Confidence 8888889999999999999999987643 21111 3467777676665442 5666666665433 2
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCC-CcccHHHHHHHHHhcCCHHHhhc--------HH--
Q 048764 96 NVIP-NEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVP-RLRTYDPALFCFCENLEAQKAYE--------EQ-- 160 (295)
Q Consensus 96 g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P-~~~ty~~ll~~~~~~g~~~~A~~--------e~-- 160 (295)
|-++ -..+|+.+-..|.. |++++|+..|++... ..|-.+ ...+|+.+-..|.+.|+.++|.. .+
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 2211 14678888888988 999999999998762 111111 13567888889999999999988 00
Q ss_pred --------HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 161 --------EITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 161 --------~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.|..+...+...|++++|...+++..
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 24455566677799999999999977
No 103
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.16 E-value=0.0083 Score=53.45 Aligned_cols=152 Identities=13% Similarity=0.091 Sum_probs=109.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--C---CCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhC---
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN--F---RLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSN--- 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g--~---~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~--- 95 (295)
.|..+-..|...|+++.|+..|.+..+.- . .+. ..+++.+-..+...+. +++|...|++..+.
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ--------YEDAISHFQKAYSMAEA 216 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999876431 1 121 3445555555555443 99999998887651
Q ss_pred -CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc----CCCC-CcccHHHHHHHHHhcCCHHHhhc----------
Q 048764 96 -NVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEF----NVVP-RLRTYDPALFCFCENLEAQKAYE---------- 158 (295)
Q Consensus 96 -g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~----gi~P-~~~ty~~ll~~~~~~g~~~~A~~---------- 158 (295)
+-.+ ...+|+.+-..|...|++++|...|++.. .. +-.| ...++..+-..|.+.|+.++|..
T Consensus 217 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI-AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2111 12478889999999999999999999877 31 3223 34568888889999999999988
Q ss_pred -------HHHHHHHHHHHHhcCC---HHHHHHHHHHH
Q 048764 159 -------EQEITALLKVSAGTGR---VEKVYQYLQKL 185 (295)
Q Consensus 159 -------e~~y~~ll~~~~~~g~---~~~a~~ll~~m 185 (295)
...+..+-..+...|+ +++|..++++.
T Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 296 KAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 1114566666777888 77777777765
No 104
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.16 E-value=0.0091 Score=45.32 Aligned_cols=99 Identities=10% Similarity=-0.009 Sum_probs=73.4
Q ss_pred CCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC
Q 048764 20 PNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV 97 (295)
Q Consensus 20 ~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~ 97 (295)
..|+. .+..+-..+.+.|++++|+..|++..... +.+...|..+-..+...+. +++|...|+......
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGL--------YEQALQSYSYGALMD- 82 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcC-
Confidence 34544 56666777888999999999999887653 3355556655554444442 999999999987743
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 98 IPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 98 ~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+-+...|..+-.+|...|++++|...|+...
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2355677888888999999999999999877
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.16 E-value=0.0094 Score=46.47 Aligned_cols=100 Identities=6% Similarity=-0.031 Sum_probs=64.2
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
...|+. .|..+=..+.+.|++++|+..|++..... +-+...|..+-..+...+. +++|...|+...+..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~--------~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQ--------FQQAADLYAVAFALG 100 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHhhC
Confidence 344544 56666666777777888887777776542 3345555555554444332 777777777776633
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+-+...|..+-.+|...|++++|...|+...
T Consensus 101 -P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 101 -KNDYTPVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp -SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1245667777777777777777777777766
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.15 E-value=0.0083 Score=56.74 Aligned_cols=141 Identities=9% Similarity=-0.033 Sum_probs=97.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
.|++++|+..|++..+.. +-+...|..+-..+ ..++ +++|...|++..+.. +-+..+|..+-..|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGD---------TTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQ 70 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 478899999999887542 33466677776644 4455 999999999988753 24578899999999999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhc---CCHHHHH
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGT---GRVEKVY 179 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~---g~~~~a~ 179 (295)
|++++|.+.|++.. ... .-+...|..+-..|.+.|+.++|.. ...+..+...+... |+.++|.
T Consensus 71 g~~~~A~~~~~~al-~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~ 148 (568)
T 2vsy_A 71 QRHAEAAVLLQQAS-DAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS 148 (568)
T ss_dssp TCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred CCHHHHHHHHHHHH-hcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence 99999999999988 543 2345678888999999999999988 22367778888888 9999999
Q ss_pred HHHHHHHHcc
Q 048764 180 QYLQKLRSTV 189 (295)
Q Consensus 180 ~ll~~m~~~~ 189 (295)
+.+++..+..
T Consensus 149 ~~~~~al~~~ 158 (568)
T 2vsy_A 149 AQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcC
Confidence 9999987643
No 107
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.033 Score=41.51 Aligned_cols=103 Identities=11% Similarity=0.035 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
.|..+-..+.+.|++++|+..|++..+. .|+ ...|..+-..+...+. +++|...|+...+.. +.+
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~-~~~ 98 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLED--------YDKAETEASKAIEKD-GGD 98 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHcc--------HHHHHHHHHHHHhhC-ccC
Confidence 8888889999999999999999998875 455 4555555554544442 999999999987742 246
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYD 141 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~ 141 (295)
...|..+...|...|++++|...|++.. .. .|+.....
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~ 136 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCV-SL--EPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH--CSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hc--CCCcHHHH
Confidence 7888899999999999999999999987 43 46544333
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.15 E-value=0.073 Score=43.32 Aligned_cols=153 Identities=10% Similarity=-0.010 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+..+=..|...+++++|+..|.+..+.| +...+..|=.++..++.+ ...++|...|+.-.+.| +..++
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~-----~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQ-----ADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTS-----CCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC-----CCHHHHHHHHHHHHHCC---CHHHH
Confidence 55556666777899999999999998877 345555555555554210 02899999999998765 56777
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHhhhhcCCC-CCcccHHHHHHHHHh----cCCHHHhhc------H-----HHHHH
Q 048764 105 TSVARLAAS----KKDSDYAFELIKRMNNEFNVV-PRLRTYDPALFCFCE----NLEAQKAYE------E-----QEITA 164 (295)
Q Consensus 105 ~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~-P~~~ty~~ll~~~~~----~g~~~~A~~------e-----~~y~~ 164 (295)
..|-..|.. .+++++|+.+|+... ..|-. .+...+..|-..|.. .++.++|+. + ..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 778778877 889999999999988 66521 015566667667776 667777766 1 11233
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHHcc
Q 048764 165 LLKVSAGT-G-----RVEKVYQYLQKLRSTV 189 (295)
Q Consensus 165 ll~~~~~~-g-----~~~~a~~ll~~m~~~~ 189 (295)
|-..|... | +.++|...+++-.+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 33333322 2 6777777777766654
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.12 E-value=0.019 Score=44.11 Aligned_cols=100 Identities=9% Similarity=-0.012 Sum_probs=75.8
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
...|+. .+..+-..+.+.|++++|+..|.+..... +.+...|..+-..+...+. +++|...|+......
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQ--------YDLAIHSYSYGAVMD 85 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcC
Confidence 344554 77777788889999999999999887653 3456666665555555442 999999999987743
Q ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 97 VIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 97 ~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+-+...|..+-.+|...|++++|...|+...
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2356778888889999999999999999877
No 110
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.08 E-value=0.0053 Score=46.32 Aligned_cols=137 Identities=9% Similarity=-0.033 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFR-LS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~-pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
+|..+-..|...|++++|+..|.+..+.... ++ ..++..+-..+...+. +++|...|++... .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE--------FETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHh
Confidence 7888888899999999999999987643211 11 1345555554444442 8999999988655 1
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCC
Q 048764 96 NVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGR 174 (295)
Q Consensus 96 g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~ 174 (295)
+-++ ...++..+-..+...|++++|...+++.. ...-..+..... . ..+..+-..+...|+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~--~---------------~~~~~la~~~~~~g~ 144 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-AIAQELKDRIGE--G---------------RACWSLGNAYTALGN 144 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHH--H---------------HHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHccchHhH--H---------------HHHHHHHHHHHHccC
Confidence 1111 14567888888999999999999998876 321011100000 1 114556666777888
Q ss_pred HHHHHHHHHHHHH
Q 048764 175 VEKVYQYLQKLRS 187 (295)
Q Consensus 175 ~~~a~~ll~~m~~ 187 (295)
+++|...+.+...
T Consensus 145 ~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 145 HDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 111
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.08 E-value=0.01 Score=52.48 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS--------------LHHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd--------------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.|..+=..|.+.|++++|+..|++..+..-... ...|..+-..+...+. +++|...|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~A~~~~~ 220 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------FSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHH
Confidence 788888889999999999999999886542221 4666666664444442 999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 91 QMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 91 ~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
...+.. +.+...|..+-.+|...|++++|...|++.. ..
T Consensus 221 ~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l 259 (336)
T 1p5q_A 221 KALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVL-QL 259 (336)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HH
Confidence 988743 3468889999999999999999999999987 44
No 112
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.08 E-value=0.02 Score=43.71 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|+...+.. +.+..+|..+...+...|++++|...|+... ... |+ ...|
T Consensus 29 ~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~-------------------- 84 (166)
T 1a17_A 29 YENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD--KKYIKGY-------------------- 84 (166)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHH--------------------
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC--cccHHHH--------------------
Confidence 899999999887643 2467888888889999999999999999887 443 43 2333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+-..+...|++++|...+.+...
T Consensus 85 --~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 85 --YRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344445556666666666666554
No 113
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.06 E-value=0.061 Score=47.31 Aligned_cols=153 Identities=11% Similarity=-0.027 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C--CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC--CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFR--L--SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN--NV 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~--p--d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~--g~ 97 (295)
.+..+-..+...|++++|...|++.....-. + ...+|..+-. ....++ +++|...+++.... ..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~---------~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD---------LDNARSQLNRLENLLGNG 207 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcc
Confidence 6677778889999999999999988754321 1 2345555555 344455 99999999987652 11
Q ss_pred CCCHHHHH----HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC---cccHHHHHHHHHhcCCHHHhhc---------H--
Q 048764 98 IPNEALVT----SVARLAASKKDSDYAFELIKRMNNEFNVVPR---LRTYDPALFCFCENLEAQKAYE---------E-- 159 (295)
Q Consensus 98 ~pd~~ty~----~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~---~~ty~~ll~~~~~~g~~~~A~~---------e-- 159 (295)
........ .++..+...|++++|..+++... .....+. ...+..+...+...|+.++|.. .
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 286 (373)
T 1hz4_A 208 KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA-KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL 286 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC-CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC-CCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC
Confidence 11111111 23345778999999999999987 4332211 1245677788889999999887 0
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 160 -------QEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 160 -------~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+..+-.++...|+.++|...+.+...
T Consensus 287 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 287 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 0134445557788999999999888654
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.02 Score=41.99 Aligned_cols=94 Identities=7% Similarity=0.030 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+=..+.+.|++++|+..|++..+.. +.+...|..+-..+...+. +++|...|+...+.. +-+...|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~ 75 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS--------FPEAIADCNKAIEKD-PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-CCcHHHH
Confidence 67777788899999999999999988653 4456667777665544442 999999999987743 2457788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+-.++...|++++|...|++..
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHH
Confidence 899999999999999999999876
No 115
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.01 E-value=0.025 Score=59.07 Aligned_cols=143 Identities=12% Similarity=0.158 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCC-CC-------------------CcchHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSAT-DP-------------------SLKDSALRH 84 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~-~~-------------------~~~~~~~~~ 84 (295)
.|..++..|.+.|++++|++.|...++.. ++....+-+...|++.+. +. ....|.+++
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~Yee 1213 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDA 1213 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHH
Confidence 66667777777788888887777655543 222222234444444331 00 001122333
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------ 158 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------ 158 (295)
|..+|... ..|..+...|.+.|+++.|.+.+++-. +..+|.-+-.+|...|++..|..
T Consensus 1214 A~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~Ii 1277 (1630)
T 1xi4_A 1214 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIV 1277 (1630)
T ss_pred HHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 33333331 244444444444444444444444322 22344444444444444444444
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 --EQEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 --e~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...+..++..|.+.|.+++|..+++.-
T Consensus 1278 v~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1278 VHADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123678888899999999999888653
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.99 E-value=0.0033 Score=54.14 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|+...+.. +-+...|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~ 75 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELD-GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 67777788999999999999999988753 3356666666665544442 999999999987743 3467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+-.+|...|++++|...|....
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999876
No 117
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.98 E-value=0.022 Score=42.16 Aligned_cols=94 Identities=10% Similarity=-0.002 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|.+..+.. +.+...|..+-..+...+. +++|...|+...+.. +.+...|
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~ 80 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELD-GQSVKAH 80 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-chhHHHH
Confidence 78888888999999999999999987664 3355666666665544442 999999999988743 2467889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+-..|...|++++|...|....
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999876
No 118
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.91 E-value=0.015 Score=45.47 Aligned_cols=109 Identities=13% Similarity=0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-HHcCCCCCCcchHHH--HHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYL-CSNSATDPSLKDSAL--RHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~-~~~~~~~~~~~~~~~--~~a~~lf~~M~~~g~~pd~ 101 (295)
.|..+-..|...|++++|+..|++..+.. +.+...+..+-.+ +...+. + ++|...|+...+.. +-+.
T Consensus 46 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~--------~~~~~A~~~~~~al~~~-p~~~ 115 (177)
T 2e2e_A 46 QWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQ--------HMTAQTRAMIDKALALD-SNEI 115 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTT--------CCCHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHhC-CCcH
Confidence 66666777777777777777777766542 2244444444443 433331 5 67777777776632 2345
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
..|..+...|...|++++|...|+... .. .|+......++..
T Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~al-~~--~p~~~~~~~~~~~ 157 (177)
T 2e2e_A 116 TALMLLASDAFMQANYAQAIELWQKVM-DL--NSPRINRTQLVES 157 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--CCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH-hh--CCCCccHHHHHHH
Confidence 666777777777777777777777766 33 3444443344433
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.89 E-value=0.0039 Score=49.26 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH-H-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYL-C-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~-~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|..+-..+.+.|++++|+..|+...... |+...+..+..+ + .... ..+|...|+...+.. +-+..
T Consensus 42 a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~---------~~~a~~~~~~al~~~-P~~~~ 109 (176)
T 2r5s_A 42 VKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAA---------ESPELKRLEQELAAN-PDNFE 109 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHT---------SCHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcc---------cchHHHHHHHHHHhC-CCCHH
Confidence 78888888999999999999999876543 244333322222 1 2122 224677888876632 23578
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC---cccHHHHHHHHHhcCCHHHh
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR---LRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~---~~ty~~ll~~~~~~g~~~~A 156 (295)
.+..+-..+...|++++|...|++.. .. .|+ ...+..+...|...|+.++|
T Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~l-~~--~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 110 LACELAVQYNQVGRDEEALELLWNIL-KV--NLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-TT--CTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHH-Hh--CcccChHHHHHHHHHHHHHhCCCCcH
Confidence 89999999999999999999999988 54 344 33555555555555555444
No 120
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.88 E-value=0.016 Score=51.60 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=105.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN-----FRLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS---- 94 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g-----~~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~---- 94 (295)
.|..+-..|...|+++.|+..|.+..+.. ..+. ..+++.+-..+...+. +++|...|++..+
T Consensus 143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH--------YDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHH
Confidence 78888889999999999999999876431 1222 3445555555555543 8999998887655
Q ss_pred CCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhh----cCCCCCcccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 95 NNVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNE----FNVVPRLRTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 95 ~g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~----~gi~P~~~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
.+-.+ ...+++.+-..|...|++++|...|++.. . .+-.....++..+-..|.+.|+.++|..
T Consensus 215 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA-KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 12211 23578888889999999999999999877 3 1222235667788889999999999988
Q ss_pred ------HHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 048764 159 ------EQEITALLKVSAGTGR---VEKVYQYLQK 184 (295)
Q Consensus 159 ------e~~y~~ll~~~~~~g~---~~~a~~ll~~ 184 (295)
...+..+-..+...++ +.+|..++++
T Consensus 294 ~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 294 RSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp TCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 1124555555666777 7777777766
No 121
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.84 E-value=0.0018 Score=47.54 Aligned_cols=105 Identities=15% Similarity=0.120 Sum_probs=69.5
Q ss_pred hcCCHHHHHHHHHHHHhcCC--CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 048764 35 KSKDLATAISLYESALSLNF--RLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAA 112 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~--~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~ 112 (295)
..|++++|+..|++..+.+. +-+...|..+-..+...+. +++|...|++..+.. +-+..+|..+..++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE--------YRKAEAVLANGVKQF-PNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 35788899999999887641 2234555555554544442 999999999988753 235778888999999
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 113 SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
..|++++|...|++......-.|+...|...|..|.
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 999999999999987723333344455555555544
No 122
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.83 E-value=0.032 Score=40.64 Aligned_cols=98 Identities=10% Similarity=0.054 Sum_probs=66.1
Q ss_pred CCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC
Q 048764 55 RLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV 133 (295)
Q Consensus 55 ~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi 133 (295)
+.+...|..+-..+ ..++ +++|...|++..+.. +.+..+|..+...|...|++++|..+|++.. ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~---------~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~-- 79 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGD---------YPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI-QL-- 79 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTC---------SHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HH--
T ss_pred cccHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-Hh--
Confidence 33445555555544 3444 888999999887643 2367888888888888999999999998887 43
Q ss_pred CCC-cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 134 VPR-LRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 134 ~P~-~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.|+ ... |..+-..+...|++++|...+.+...
T Consensus 80 ~~~~~~~----------------------~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 80 EPTFIKG----------------------YTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp CTTCHHH----------------------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHH----------------------HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 243 223 33444556667777777777776654
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.82 E-value=0.009 Score=46.85 Aligned_cols=108 Identities=6% Similarity=0.036 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH-HHhcCCH--H
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC-FCENLEA--Q 154 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~-~~~~g~~--~ 154 (295)
..|.+++|...|+...+.. +.+...|..+-..|...|++++|...|+... ... ..+...|..+... |...|+. +
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQAL-QLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4456888888888876643 3467899999999999999999999999987 443 2345566666677 7788997 8
Q ss_pred Hhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 155 KAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 155 ~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
+|.. ...|..+-..+...|++++|...+.+....
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8877 122667777889999999999999998764
No 124
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.80 E-value=0.0083 Score=58.48 Aligned_cols=120 Identities=10% Similarity=-0.067 Sum_probs=95.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
.|..+-..+.+.|++++|+..|+++.+.. +-+...|..+-. +...++ +++|...|++..+.. +-+...
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~---------~~~A~~~~~~al~l~-P~~~~~ 503 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGD---------YDSATKHFTEVLDTF-PGELAP 503 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHS-TTCSHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHhC-CCChHH
Confidence 77788888999999999999999988653 335556666655 444455 999999999988743 235678
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|..+-..|.+.|++++ .+.|++.. ... .-+...|..+-.+|.+.|+.++|..
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVW-STN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHH-HhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8999999999999999 99999987 543 2345678888899999999999988
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.80 E-value=0.018 Score=41.71 Aligned_cols=97 Identities=8% Similarity=0.002 Sum_probs=66.0
Q ss_pred HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 58 LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 58 ~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
...+..+-..+...+. +++|...|+...... +.+...|..+...+...|++++|...++... .. .|+.
T Consensus 12 ~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~--~~~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVEN--------FEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAI-CI--DPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTC
T ss_pred hHHHHHHHHHHHHccC--------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHH-hc--CccC
Confidence 3455555554433332 889999999887643 3467788888888889999999999998887 44 3432
Q ss_pred -ccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 138 -RTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 138 -~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.. |..+-..+...|++++|...+.+....
T Consensus 80 ~~~----------------------~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 80 SKA----------------------YGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHH----------------------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHH----------------------HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 22 344555566777777888777776654
No 126
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.80 E-value=0.036 Score=57.92 Aligned_cols=140 Identities=11% Similarity=-0.018 Sum_probs=94.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 22 PETNFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
+..+|..+=.++.+.|++++|+..|.+. -|...|.-++..|.+.+. +++|.+.|..-.+.. ++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGk--------yEEAIeyL~mArk~~--~e~ 1167 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGN--------WEELVKYLQMARKKA--RES 1167 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhc--ccc
Confidence 3447777777777788888888887553 345666667776666553 778887777654432 333
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc----HHHHHHHHHHHHhcCCHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE----EQEITALLKVSAGTGRVEK 177 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~----e~~y~~ll~~~~~~g~~~~ 177 (295)
...+.++.+|++.+++++...++ . .|+...|..+-..|...|+.++|.. ...|..+...+++.|++++
T Consensus 1168 ~Idt~LafaYAKl~rleele~fI---~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A 1168 YVETELIFALAKTNRLAELEEFI---N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred cccHHHHHHHHhhcCHHHHHHHH---h-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHH
Confidence 34445777777777776433222 2 3455566667777777777777777 5568888888888888888
Q ss_pred HHHHHHHH
Q 048764 178 VYQYLQKL 185 (295)
Q Consensus 178 a~~ll~~m 185 (295)
|.+..++-
T Consensus 1240 AIEaarKA 1247 (1630)
T 1xi4_A 1240 AVDGARKA 1247 (1630)
T ss_pred HHHHHHHh
Confidence 88887764
No 127
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.76 E-value=0.2 Score=46.05 Aligned_cols=16 Identities=6% Similarity=-0.031 Sum_probs=7.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.++.++|..++++..+
T Consensus 236 ~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3445555555544433
No 128
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.73 E-value=0.1 Score=44.60 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC-CCc----ccHHHHHHHHHhcC
Q 048764 82 LRHGFRVFDQMLSNN-VIPNE----ALVTSVARLAASKKDSDYAFELIKRMNNEFNVV-PRL----RTYDPALFCFCENL 151 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g-~~pd~----~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~-P~~----~ty~~ll~~~~~~g 151 (295)
+++|..++++..+.. ..|+. ..|..+...+...|++++|+..|++.. ..... ++. .+|+.+-..|...|
T Consensus 91 y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 91 YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH-HTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 999999999988732 23442 234456677777889999999999988 53322 332 26888889999999
Q ss_pred CHHHhhc-------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 152 EAQKAYE-------------------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 152 ~~~~A~~-------------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
+.++|.. ...|..+-..|.+.|++++|..++.+...
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999988 11267788889999999999999998655
No 129
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.72 E-value=0.041 Score=39.76 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------H----------H-HHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------E----------Q-EIT 163 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e----------~-~y~ 163 (295)
+|..+...+...|++++|..+|+... ... ..+...|..+...|...|+.++|.. . . .|.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAK-ELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-hcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34444445555555555555555544 322 1233344444445555555555544 0 1 155
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIE 201 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~ 201 (295)
.+-..+...|++++|...+.+.... .|++.....+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 6667788899999999999998774 45555554443
No 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.71 E-value=0.041 Score=40.98 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIE 201 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~ 201 (295)
|..+=.++...|++++|.+.+++-.. ..|++.+...|.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~ 123 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence 44455567788999999999988655 356766655543
No 131
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.70 E-value=0.011 Score=45.57 Aligned_cols=121 Identities=9% Similarity=0.011 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A 156 (295)
..|.+++|...|+..... .|+ ...+-.+-..|.+.|++++|.+.|++.. ... .-+...|..+-..|.+.|+.++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-NVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 456799999999887542 233 3456678889999999999999999988 543 23456788888999999999999
Q ss_pred hc------------HHHHHHHHHHHHhcCCHHHHHH-HHHHHHHcccCCCh-hHHHHHHHHH
Q 048764 157 YE------------EQEITALLKVSAGTGRVEKVYQ-YLQKLRSTVRCVNE-ETGKIIEDWF 204 (295)
Q Consensus 157 ~~------------e~~y~~ll~~~~~~g~~~~a~~-ll~~m~~~~~~p~~-~t~~~l~~~~ 204 (295)
.. ...|..+-..+.+.|+.++|.. ++++..+ ..|+. ..+.+....+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHH
Confidence 98 2226777778889999876654 4566554 35644 4455544444
No 132
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=96.69 E-value=0.24 Score=45.54 Aligned_cols=109 Identities=4% Similarity=-0.077 Sum_probs=52.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS-- 113 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~-- 113 (295)
.+++++|+..|++..+.| +...+..|-.++..+.. ..+..++|.+.|+...+.| +...+..|-..|..
T Consensus 128 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g----~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDG----VTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGL 197 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS----SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC----CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCC
Confidence 455566666665555544 22333333333332110 0012566666666655543 44555555555555
Q ss_pred --CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc
Q 048764 114 --KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE 158 (295)
Q Consensus 114 --~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~ 158 (295)
.+++++|+.+|..-. ..| +...+..|-..|.. .++.++|..
T Consensus 198 g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp SSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 566666666666555 433 23344444444443 455555554
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.68 E-value=0.031 Score=49.29 Aligned_cols=118 Identities=8% Similarity=-0.067 Sum_probs=86.5
Q ss_pred HHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHcCCCHHHHHH
Q 048764 58 LHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN--------------EALVTSVARLAASKKDSDYAFE 122 (295)
Q Consensus 58 ~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd--------------~~ty~~li~~~~~~g~~~~A~~ 122 (295)
...|..+-. ++..+. +++|...|++..+..-... ..+|..+-..|.+.|++++|+.
T Consensus 147 a~~~~~~g~~~~~~g~---------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~ 217 (336)
T 1p5q_A 147 STIVKERGTVYFKEGK---------YKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE 217 (336)
T ss_dssp HHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555 444555 9999999999877432211 5899999999999999999999
Q ss_pred HHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 048764 123 LIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKV-YQYLQKLR 186 (295)
Q Consensus 123 l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a-~~ll~~m~ 186 (295)
.|+... ... ..+...|..+-.+|...|+.++|.. ...+..+-.++.+.|+.++| ..++..|.
T Consensus 218 ~~~~al-~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 218 SCNKAL-ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 554 3356678888888889999988887 22266666777777888777 44555554
No 134
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=96.68 E-value=0.047 Score=43.14 Aligned_cols=151 Identities=10% Similarity=-0.067 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS----LNFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~----~g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|..+-..|...|++++|+..|++..+ .+..| ...++..+-..+...+. +++|...|++... .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN--------WDAARRCFLEERELLASL 99 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHHc
Confidence 888888999999999999999998765 22333 23445555444444442 8899988887655 2
Q ss_pred CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCC--cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHH
Q 048764 96 NVIP--NEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPR--LRTYDPALFCFCENLEAQKAYEEQEITALLKV 168 (295)
Q Consensus 96 g~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~--~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~ 168 (295)
+-.| ...++..+-..+...|++++|...|++... ..+ .|. ..++..+-..+...|+.++|.. .|...+..
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~ 176 (203)
T 3gw4_A 100 PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNLLEAQQ--HWLRARDI 176 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCHHHHHH--HHHHHHHH
Confidence 2111 245678888899999999999999998762 111 111 2335677778889999988854 23444555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 048764 169 SAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~ 186 (295)
+.+.|+....-.++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (203)
T 3gw4_A 177 FAELEDSEAVNELMTRLN 194 (203)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhccc
Confidence 556666555444444443
No 135
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.66 E-value=0.049 Score=38.45 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHH
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVS 169 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~ 169 (295)
..|..+...+...|++++|..+|+... ... ..+...+..+...|...|+.++|.. ...|..+-.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAI-KLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH-HHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445555566666666666666666665 332 1234455555556666666666665 11256667778
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 048764 170 AGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~~~ 188 (295)
...|++++|...+.+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 8899999999999887653
No 136
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.65 E-value=0.032 Score=42.87 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEA 153 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~ 153 (295)
+++|.+.|++..+.. +-+..+|..+-..|...|++++|...|+... .. .|+ ...|..+-..|.+.|+.
T Consensus 47 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 47 YDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSV-EL--NPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCh
Confidence 455555555444321 1234444444445555555555555554444 22 232 23344444444444443
No 137
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.62 E-value=0.032 Score=41.26 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHH
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALL 166 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll 166 (295)
.+...|..+-..+...|++++|...|.... ... ..+...|..+-..|...|+.++|.. ...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAI-TRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHH-hhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 456677777777778888888888887766 433 2234566677777777787777776 12266677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 048764 167 KVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.++...|++++|...+.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7788899999999999887653
No 138
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.60 E-value=0.034 Score=43.24 Aligned_cols=91 Identities=9% Similarity=-0.088 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKV 168 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~ 168 (295)
...+..+-..+.+.|++++|...|+... ... .-+...|..+-.+|...|+.++|.. ...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLC-IYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 3456666667777788888888887776 443 2234556666677777787777777 1126677778
Q ss_pred HHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 169 SAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
|...|++++|...|++.... .|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 88999999999999998774 45554
No 139
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=96.57 E-value=0.0068 Score=52.23 Aligned_cols=149 Identities=9% Similarity=-0.031 Sum_probs=110.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+-.+-..+.+.|++++|..+|++..+.. +-+...+..|-.++...+. +++|..+|+..... .|+....
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~--------~~~A~~~l~~~~~~--~p~~~~~ 187 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNR--------SEDAEAVLXTIPLQ--DQDTRYQ 187 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC--------HHHHHHHHTTSCGG--GCSHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCC--------HHHHHHHHHhCchh--hcchHHH
Confidence 66677777889999999999999988653 3355666666665555442 99999999988664 3554433
Q ss_pred HHHHH-HHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HH------HHHHHHHHH
Q 048764 105 TSVAR-LAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQ------EITALLKVS 169 (295)
Q Consensus 105 ~~li~-~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~------~y~~ll~~~ 169 (295)
..... .+...++.+.|...|++.. ... ..+...+..+-..|...|+.++|.. .| .+..|...+
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al-~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQV-AEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHH-hcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 33322 3566778888999998887 543 3346678888889999999999998 11 278889999
Q ss_pred HhcCCHHHHHHHHHHHH
Q 048764 170 AGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 170 ~~~g~~~~a~~ll~~m~ 186 (295)
...|+.++|...+++-.
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 99999999888777643
No 140
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.54 E-value=0.12 Score=38.24 Aligned_cols=96 Identities=15% Similarity=0.014 Sum_probs=65.9
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN----EALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
+...+..+-..+...+. +++|...|++..+. .|+ ..+|..+...|...|++++|...|+... ..
T Consensus 27 ~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~- 94 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGD--------YGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI-EK- 94 (148)
T ss_dssp CHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-
T ss_pred HHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-hh-
Confidence 44555555554443332 88999999988764 355 6778888888888999999999998877 43
Q ss_pred CCCCc-ccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 133 VVPRL-RTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 133 i~P~~-~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.|+. .. |..+-.++...|++++|...+.+...
T Consensus 95 -~~~~~~~----------------------~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 95 -DGGDVKA----------------------LYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp -TSCCHHH----------------------HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -CccCHHH----------------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3432 22 33444556677888888888887765
No 141
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.53 E-value=0.13 Score=37.23 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=69.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSL---HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN---- 100 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~---~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd---- 100 (295)
+-..+.+.|++++|+..|++..+.. +.+. ..+..+-. +...++ +++|...|+...+.. |+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~---------~~~A~~~~~~~~~~~--p~~~~~ 75 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRN---------FQLAEAQFRDLVSRY--PTHDKA 75 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHC--TTSTTH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhcc---------HHHHHHHHHHHHHHC--CCCccc
Confidence 4456778999999999999988653 1222 24444444 344454 999999999988743 33
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
..++..+-..+...|++++|...|+... ... |+...
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~--p~~~~ 111 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQTLQQVA-TQY--PGSDA 111 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--TTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHC--CCChH
Confidence 5678888889999999999999999988 543 65443
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.50 E-value=0.055 Score=43.21 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC--------------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLS--------------LHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd--------------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
.|..+-..+.+.|++++|+..|.+..+..- .|+ ...|..+-..+...+. +++|...|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~ 111 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD--------YPKAIDHA 111 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHH
Confidence 666777788899999999999999886421 121 1455555554444442 99999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+...+.. +.+..+|..+-.+|...|++++|...|+...
T Consensus 112 ~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 112 SKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9887742 3467888888899999999999999999877
No 143
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.39 E-value=0.1 Score=50.78 Aligned_cols=166 Identities=8% Similarity=0.005 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----------CCC-----------CHHhHHHHHHHHHcCCCCCCcchHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLN----------FRL-----------SLHHFNALLYLCSNSATDPSLKDSALR 83 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g----------~~p-----------d~~ty~~ll~~~~~~~~~~~~~~~~~~ 83 (295)
.|-..+...-+.|+++.|..+|+.+.... ++. ....|...+++..+.+. ++
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--------l~ 451 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--------LA 451 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------HH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--------HH
Confidence 57777888889999999999999988642 221 12356666675544332 89
Q ss_pred HHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhc--
Q 048764 84 HGFRVFDQMLSN-N-VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYE-- 158 (295)
Q Consensus 84 ~a~~lf~~M~~~-g-~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~-- 158 (295)
.|+.+|....+. + ..+...+..+.|.-.. .++++.|..+|+... +. -|+. .-+...++.....|+.+.|..
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~L-k~--~p~~~~~w~~y~~fe~~~~~~~~AR~lf 527 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGL-KY--FATDGEYINKYLDFLIYVNEESQVKSLF 527 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHH-HH--HTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHH-HH--CCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999876 3 2344444444444222 356999999999987 44 3433 344577777778899988887
Q ss_pred -------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 159 -------------EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 159 -------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
..-|...++.=.+.|+.+.+..+.++|.+. .|+.....++.+-|
T Consensus 528 eral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 528 ESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 123888888888899999999999999885 56666555555444
No 144
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.083 Score=47.31 Aligned_cols=155 Identities=10% Similarity=-0.003 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHH---hHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL-NFRLSLH---HFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~-g~~pd~~---ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.+..+...|.+.|++++|..+|.++... +..++.. ....++..+ ...+ ..+.|..++.+... .
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~ 128 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD--------SLDDQIFVCEKSIEFAKRE 128 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS--------CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHh
Confidence 5788899999999999999999987632 2222322 233344433 2233 28888888887644 3
Q ss_pred CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhh-cCC--CCC-cccHHHHHHHHHhcCCHHHhhc------------
Q 048764 96 NVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNE-FNV--VPR-LRTYDPALFCFCENLEAQKAYE------------ 158 (295)
Q Consensus 96 g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~-~gi--~P~-~~ty~~ll~~~~~~g~~~~A~~------------ 158 (295)
+..+. ..++..|...|...|++++|..++++.... .+. .|. ..+|..+...|...|+.++|..
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 208 (434)
T 4b4t_Q 129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI 208 (434)
T ss_dssp SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence 33343 567888999999999999999999987621 121 121 3468888899999999999887
Q ss_pred -H------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -E------QEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -e------~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
. ..|..+...+...+++++|...+.+..+
T Consensus 209 ~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 209 YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0 1155666667788999999887776644
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.37 E-value=0.02 Score=40.32 Aligned_cols=87 Identities=5% Similarity=-0.037 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 79 DSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 79 ~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|.+++|...|+...+.. +.+..+|..+-..+...|++++|...|++.. .. .|+....
T Consensus 19 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~--~~~~~~~------------------ 76 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVI-NV--IEDEYNK------------------ 76 (112)
T ss_dssp SCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HT--SCCTTCH------------------
T ss_pred hhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hh--CcccchH------------------
Confidence 345667777777665532 2345666666667777777777777777666 33 2330000
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 048764 159 EQEITALLKVSAGT-GRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 e~~y~~ll~~~~~~-g~~~~a~~ll~~m~~~ 188 (295)
..|..+-..+... |++++|.+.+.+....
T Consensus 77 -~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 77 -DVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp -HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 0145566667788 8888888888887654
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.037 Score=40.57 Aligned_cols=82 Identities=11% Similarity=0.032 Sum_probs=41.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHh
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAG 171 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~ 171 (295)
|..+-..+.+.|++++|...|++.. ... ..+...|..+-.+|.+.|+.++|.. ...|..+-.++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMI-KRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3333344444444444544444444 221 1123334444444444444444444 1115555666777
Q ss_pred cCCHHHHHHHHHHHHH
Q 048764 172 TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 172 ~g~~~~a~~ll~~m~~ 187 (295)
.|++++|...+.+...
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 8888888888887655
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.31 E-value=0.013 Score=45.13 Aligned_cols=80 Identities=9% Similarity=-0.047 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHHhhcHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQKAYEEQ 160 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~A~~e~ 160 (295)
+++|...|+...... +.+...|..+-.+|...|++++|...|+... .. .|+. ..|
T Consensus 37 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l--~p~~~~~~-------------------- 92 (148)
T 2vgx_A 37 YEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGA-VM--DIXEPRFP-------------------- 92 (148)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCTHHH--------------------
T ss_pred hHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc--CCCCchHH--------------------
Confidence 889999998877643 2467788888888888999999999998887 43 3442 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..+-.++...|++++|...|.+..+
T Consensus 93 --~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 93 --FHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp --HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445666677777776666544
No 148
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.30 E-value=0.061 Score=39.97 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC--CCCC--
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN--VIPN-- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g--~~pd-- 100 (295)
.+..+=..+.+.|++++|+..|++..+.. +-+...|+.+-..+...+. +++|...|+...+-. ..++
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKK--------FAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhh--------HHHHHHHHHHHHHhCcccchhhH
Confidence 67777788999999999999999988753 3456667766665554442 999999999876521 2222
Q ss_pred --HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 101 --EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 101 --~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
..+|..+-..+...|++++|++.|++-. .. .||..+
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal-~~--~~~~~~ 118 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSL-SE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--SCCHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh--CcCHHH
Confidence 2467777788889999999999999877 43 355433
No 149
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.29 E-value=0.049 Score=40.52 Aligned_cols=88 Identities=10% Similarity=-0.009 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
.|...=..|.+.|++++|++.|++.. ... ..+...|..+-.+|.+.|+.++|.. ...|..+-.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAV-KRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34444555666666666666666655 332 2234455566666666666666666 112666777788
Q ss_pred hcCCHHHHHHHHHHHHHcccCCCh
Q 048764 171 GTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
..|++++|...|++..+. .|+.
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HCCCHHHHHHHHHHHHHH--CcCC
Confidence 889999999999987663 5554
No 150
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.28 E-value=0.038 Score=42.67 Aligned_cols=86 Identities=12% Similarity=0.026 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHH
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKV 168 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~ 168 (295)
...|..+-..+...|++++|+..|++.. ... .-+...|..+-.+|.+.|+.++|.. ...|..+-.+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQAL-SIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 4455566666666777777777776665 332 1244556666666666777666666 1126667777
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 048764 169 SAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 169 ~~~~g~~~~a~~ll~~m~~~ 188 (295)
+...|++++|...|.+..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88889999999988887664
No 151
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.27 E-value=0.064 Score=49.47 Aligned_cols=117 Identities=15% Similarity=0.007 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS--------------LHHFNALLYLCSNSATDPSLKDSALRHGFRVFD 90 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd--------------~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~ 90 (295)
.|..+=..|.+.|++++|+..|++..+..-... ...|..+-..+...+. +++|...|+
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~A~~~~~ 341 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE--------YTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHH
Confidence 777788889999999999999999876421111 4556555554444442 999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCH
Q 048764 91 QMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEA 153 (295)
Q Consensus 91 ~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~ 153 (295)
..++.. +.+...|..+-.+|...|++++|+..|+... . +.|+. ..|..+-..+.+.|+.
T Consensus 342 ~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~--l~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 342 KALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVL-E--VNPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T--TC----CHHHHHHHHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHHHHHHHH
Confidence 988743 3467889999999999999999999999987 4 34543 3344444443333333
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.27 E-value=0.025 Score=52.66 Aligned_cols=115 Identities=12% Similarity=0.032 Sum_probs=84.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARL 110 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~ 110 (295)
..+.+.|++++|+..|++..+.. +-+...|..+-..+...+. +++|...|++..+.. +-+..+|..+-.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~-p~~~~~~~~lg~~ 83 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIKGYYRRAAS 83 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSC-TTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 44667899999999999988763 3356777777775555442 999999999998853 3467889999999
Q ss_pred HHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHH--HHhcCCHHHhhc
Q 048764 111 AASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFC--FCENLEAQKAYE 158 (295)
Q Consensus 111 ~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~--~~~~g~~~~A~~ 158 (295)
|...|++++|...|++.. .. .|+. ..+..+-.+ +.+.|+.++|..
T Consensus 84 ~~~~g~~~eA~~~~~~al-~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 84 NMALGKFRAALRDYETVV-KV--KPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHTCHHHHHHHHHHHH-HH--STTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHcCCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999987 44 3443 344444444 677777777766
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.23 E-value=0.043 Score=41.42 Aligned_cols=84 Identities=8% Similarity=-0.068 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSA 170 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~ 170 (295)
.+..+-..+...|++++|..+|+... ... ..+...|..+-.+|.+.|+.++|.. ...|..+-.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALC-MLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHH-HhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 34444555566666666666666665 332 1233445555556666666666665 111556666778
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 048764 171 GTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 171 ~~g~~~~a~~ll~~m~~~ 188 (295)
..|++++|...|++....
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888887653
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.23 E-value=0.06 Score=46.02 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----CC
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNF---RLS--LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----NN 96 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~---~pd--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~g 96 (295)
+..+-..+...|++++|+..|++..+... .+. ..+|+.+-..+...+. +++|...|++..+ .+
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~kal~~~~~~~ 189 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY--------LKKGIDLFEQILKQLEALH 189 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHHHhcC
Confidence 34455567788999999999999875322 111 3467777665555442 9999999998763 21
Q ss_pred CCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCC-cccHHHHHHHHHhcCCHHHh
Q 048764 97 VIP--NEALVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPR-LRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 97 ~~p--d~~ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~-~~ty~~ll~~~~~~g~~~~A 156 (295)
-.+ +..+|+.+-..|...|++++|+.+|++... ..+..+. ..+|..+-..|.+.|+.++|
T Consensus 190 ~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 190 DNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 111 126899999999999999999999998762 1111111 45677778888899998887
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.20 E-value=0.063 Score=39.55 Aligned_cols=94 Identities=12% Similarity=0.030 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.+-.+-..+.+.|++++|+..|++..+.. +-+...|..+-.++...+. +++|...|+...+.. +-+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~-P~~~~~~ 88 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEK--------DGLAIIALNHARMLD-PKDIAVH 88 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHH
Confidence 45555667889999999999999988753 3355555555555555443 999999999987743 2357788
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+-..|...|++++|+..|+...
T Consensus 89 ~~la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 89 AALAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999999999999999887
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.19 E-value=0.0061 Score=48.99 Aligned_cols=115 Identities=9% Similarity=-0.040 Sum_probs=64.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CC---C------
Q 048764 32 SCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IP---N------ 100 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~p---d------ 100 (295)
.....++++.+...|+.-... ..-....+..+-. ++..+. +++|...|++..+..- .| .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNE---------INEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 334445555555555422111 0112233444444 444555 9999999999887321 12 1
Q ss_pred -----HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 101 -----EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 101 -----~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
..+|..+-..|...|++++|+..++... ... ..+...|..+-.+|...|+.++|..
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~~-p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVL-KID-KNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-cccHHHHHHHHHHHHHcccHHHHHH
Confidence 2788889999999999999999999988 543 2234445555555555555555433
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.13 Score=46.09 Aligned_cols=149 Identities=11% Similarity=-0.040 Sum_probs=102.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCC-CH---------------HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRL-SL---------------HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~p-d~---------------~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
..+.+.|++++|++.|.++.+..... +. ..+..|..+|...+. +++|.+.|.....
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------~~~a~~~~~~~~~ 83 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------KDKLREFIPHSTE 83 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHTHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
Confidence 34677899999999999988654221 11 235666675655442 9999999998765
Q ss_pred -CCCCCCHH----HHHHHHHHHHcCCCHHHHHHHHHHhhh---hcCCCCC-cccHHHHHHHHHhcCCHHHhhc-------
Q 048764 95 -NNVIPNEA----LVTSVARLAASKKDSDYAFELIKRMNN---EFNVVPR-LRTYDPALFCFCENLEAQKAYE------- 158 (295)
Q Consensus 95 -~g~~pd~~----ty~~li~~~~~~g~~~~A~~l~~~M~~---~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~------- 158 (295)
.+..++.. +.+.+-..+...|+++.|..++..... ..+..+. ..++..|...|...|+.++|..
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 12222222 222333334457899999999987752 2232333 3567788899999999999988
Q ss_pred -----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 -----------EQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 -----------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
...|..+.+.|...|++++|..++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 11288889999999999999999988654
No 158
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=95.99 E-value=0.1 Score=45.10 Aligned_cols=141 Identities=10% Similarity=-0.099 Sum_probs=93.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-
Q 048764 23 ETNFLISLQSCTKSKDLATAISLYESALSLNFRLSL-HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN- 100 (295)
Q Consensus 23 ~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd- 100 (295)
+..+-.....+...|++++|..+|+.+...+ |+. ..|+.-+-++..++ +++|+..|+...... .|.
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r---------~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAER---------WTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTC---------HHHHHHHHTTGGGCS-CHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCC---------HHHHHHHHHHhhccC-Cccc
Confidence 3344556777889999999999999887654 443 33333332444454 999999998554421 111
Q ss_pred -HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHH
Q 048764 101 -EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVY 179 (295)
Q Consensus 101 -~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~ 179 (295)
...+..+=.++...|++++|+..|++-. .....|...+ .. ...+-.++.+.|+.++|.
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~-~g~~~P~~~~--da------------------~~~~glaL~~lGr~deA~ 228 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAN-DSPAGEACAR--AI------------------AWYLAMARRSQGNESAAV 228 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSTTTTTTHH--HH------------------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHh-cCCCCccccH--HH------------------HHHHHHHHHHcCCHHHHH
Confidence 2367777888999999999999999987 4333255311 01 122334467889999999
Q ss_pred HHHHHHHHcccCCChhHHH
Q 048764 180 QYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 180 ~ll~~m~~~~~~p~~~t~~ 198 (295)
.+|+++... .|+...+.
T Consensus 229 ~~l~~a~a~--~P~~~~~~ 245 (282)
T 4f3v_A 229 ALLEWLQTT--HPEPKVAA 245 (282)
T ss_dssp HHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHhc--CCcHHHHH
Confidence 999999874 45533333
No 159
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=95.99 E-value=0.023 Score=49.23 Aligned_cols=125 Identities=11% Similarity=0.100 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh----C
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL----NFRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS----N 95 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~----g~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~----~ 95 (295)
.|+.+-..|.+.|++++|+..|++..+. |-.. -..+|+.+-.++.. +. +++|...|++... .
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~--------~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD--------LSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC--------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC--------HHHHHHHHHHHHHHHHhC
Confidence 8888888999999999999999987533 2211 13456666556655 42 8889888887654 1
Q ss_pred CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhh---cCCCCCc-ccHHHHHHHHHhcCCHHHhhc
Q 048764 96 NVIP-NEALVTSVARLAASKKDSDYAFELIKRMNNE---FNVVPRL-RTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 96 g~~p-d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~---~gi~P~~-~ty~~ll~~~~~~g~~~~A~~ 158 (295)
|-.+ -..+|+.+-..|...|++++|+..|++.... .+..+.. .+|..+...+...|+.++|..
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2111 1467888999999999999999999988721 2221221 256666677778899999887
No 160
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.97 E-value=0.31 Score=40.47 Aligned_cols=155 Identities=14% Similarity=0.105 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC-H
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNF-RLS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN-E 101 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~-~pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd-~ 101 (295)
.+..+-..|.+.|++++|+..|++..+..- .|. ...+..+-..+...........|.+++|...|++..+.. |+ .
T Consensus 54 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~ 131 (261)
T 3qky_A 54 AQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHE 131 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCch
Confidence 677777889999999999999999887531 222 233333333333311111122345999999999998743 32 2
Q ss_pred HHH-----------------HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc----ccHHHHHHHHHhc----------
Q 048764 102 ALV-----------------TSVARLAASKKDSDYAFELIKRMNNEFNVVPRL----RTYDPALFCFCEN---------- 150 (295)
Q Consensus 102 ~ty-----------------~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~----~ty~~ll~~~~~~---------- 150 (295)
..+ -.+-..|...|++++|...|+... ... |+. ..+..+..+|...
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~ 208 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF-DAY--PDTPWADDALVGAMRAYIAYAEQSVRARQP 208 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHC--CCCchHHHHHHHHHHHHHHhcccchhhccc
Confidence 233 445778889999999999999988 432 542 3566666777766
Q ss_pred CCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 151 LEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 151 g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
|+.++|. ..|..++..+-......+|..++..+.
T Consensus 209 ~~~~~A~--~~~~~~~~~~p~~~~~~~a~~~l~~~~ 242 (261)
T 3qky_A 209 ERYRRAV--ELYERLLQIFPDSPLLRTAEELYTRAR 242 (261)
T ss_dssp HHHHHHH--HHHHHHHHHCTTCTHHHHHHHHHHHHH
T ss_pred chHHHHH--HHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 4445443 235555555555555566666665543
No 161
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.95 E-value=0.082 Score=47.39 Aligned_cols=119 Identities=14% Similarity=0.017 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---------------CCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL---------------NFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~---------------g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
.|..+=..+.+.|++++|+..|++..+. --+.+..+|..+-..+...+. +++|...|
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~A~~~~ 296 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD--------WQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC--------HHHHHHHH
Confidence 5777778899999999999999988751 112234455555554444442 99999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCHHH
Q 048764 90 DQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEAQK 155 (295)
Q Consensus 90 ~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~~~ 155 (295)
++..+.. +-+...|..+-.+|...|++++|+..|++.. .. .|+. ..+..+-..+...++.++
T Consensus 297 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al-~l--~P~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 297 LEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQ-EI--APEDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp HHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHHHHHHH
Confidence 9988743 2467888889999999999999999999887 44 3543 334444444444444443
No 162
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.89 E-value=0.083 Score=49.43 Aligned_cols=106 Identities=8% Similarity=-0.026 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHh--CC-CCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCC-CCC-cccHHHHHHHHH
Q 048764 82 LRHGFRVFDQMLS--NN-VIP----NEALVTSVARLAASKKDSDYAFELIKRMNN----EFNV-VPR-LRTYDPALFCFC 148 (295)
Q Consensus 82 ~~~a~~lf~~M~~--~g-~~p----d~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi-~P~-~~ty~~ll~~~~ 148 (295)
+++|..++++.++ .. ..| -..+++.|..+|...|++++|..++++... ..|- -|+ ..+|+.|-..|.
T Consensus 325 ~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~ 404 (490)
T 3n71_A 325 YHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW 404 (490)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 9999999988765 22 222 256799999999999999999999998653 2231 122 345777777888
Q ss_pred hcCCHHHhhc----------------HHH----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 149 ENLEAQKAYE----------------EQE----ITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 149 ~~g~~~~A~~----------------e~~----y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
..|+.++|.. .|. .+.|-.++...+.+.+|+.++.++++
T Consensus 405 ~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 405 HAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777 111 34444455556667777777777655
No 163
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.71 E-value=0.64 Score=37.51 Aligned_cols=143 Identities=13% Similarity=-0.001 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---
Q 048764 40 ATAISLYESALSLNFRLSLHHFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK--- 115 (295)
Q Consensus 40 ~~A~~lf~~m~~~g~~pd~~ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g--- 115 (295)
.+|+..|.+..+.| +...+..|=.++ ..++ +++|...|+...+.| +...+..|-..|.. +
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~---------~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~ 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGD---------YQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQ 66 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTS
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCC
Confidence 45778888888776 445555555544 3444 999999999998875 56777777777777 6
Q ss_pred -CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc---------H----HH-HHHHHHHHHh----c
Q 048764 116 -DSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE---------E----QE-ITALLKVSAG----T 172 (295)
Q Consensus 116 -~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~---------e----~~-y~~ll~~~~~----~ 172 (295)
++++|+.+|+.-. ..| +...+..|-..|.. .++.++|+. . +. +..|=..|.. .
T Consensus 67 ~~~~~A~~~~~~A~-~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 67 ADYPQARQLAEKAV-EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp CCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred CCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCC
Confidence 8999999999988 655 44466666666766 788888888 2 22 5555555666 7
Q ss_pred CCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
++.++|+.++++-.+. ..++..+..|-..|
T Consensus 143 ~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL--SRTGYAEYWAGMMF 172 (212)
T ss_dssp CCHHHHHHHHHHHHHT--SCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 7899999999998775 22333444444444
No 164
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.65 E-value=0.37 Score=43.51 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCC-CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL-----N-FRL-SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~-----g-~~p-d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
+|+.+-..|...|++++|+..|++..+- + ..+ ...+|+.+-. +...+.. .+++|...|++..+..
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~y~~A~~~~~kal~~~ 168 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGN-------QNERAKVCFEKALEKK 168 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTT-------HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccc-------cHHHHHHHHHHHHHhC
Confidence 8999999999999999999999987632 1 112 2334443322 2222221 3899999999987733
Q ss_pred CCCC-HHHHHHHHHH---HHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcC----CHHHhhc---------
Q 048764 97 VIPN-EALVTSVARL---AASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENL----EAQKAYE--------- 158 (295)
Q Consensus 97 ~~pd-~~ty~~li~~---~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g----~~~~A~~--------- 158 (295)
|+ ...+..+..+ +...++.++|++.|++.. .. .|+ ...+..+...+...+ +.++|..
T Consensus 169 --p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al-~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~ 243 (472)
T 4g1t_A 169 --PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI-RL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243 (472)
T ss_dssp --TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHH-HH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHh-hc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 44 4445444444 445688889999998877 44 344 445555555555544 4444444
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 159 ---EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 159 ---e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
...+..+-..+...|++++|...+.+..+. .|+.
T Consensus 244 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 280 (472)
T 4g1t_A 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNN 280 (472)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC
T ss_pred ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCh
Confidence 223677888899999999999999998763 4543
No 165
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=95.59 E-value=0.0093 Score=43.60 Aligned_cols=85 Identities=9% Similarity=0.020 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 80 SALRHGFRVFDQMLSNN--VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g--~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
|.+++|...|++..+.+ -+-+..+|..+-..|...|++++|...|++.. .. .|+... +
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~------~----------- 63 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQ--FPNHQA------L----------- 63 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTCHH------H-----------
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh--CCCchH------H-----------
Confidence 34788999999988854 23346778889999999999999999999988 54 355311 0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 158 EEQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 158 ~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
|..+-.++...|++++|...+.+....
T Consensus 64 ----~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 64 ----RVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555677778888888888876653
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.58 E-value=0.15 Score=39.14 Aligned_cols=102 Identities=19% Similarity=0.102 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CC----------CCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL-------NF----------RLSLHHFNALLYLCSNSATDPSLKDSALRHGFR 87 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~-------g~----------~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~ 87 (295)
.|...=..+.+.|++++|+..|.+..+. .- +.+...|..+-..+...+. +++|..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~--------~~~A~~ 84 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD--------LHEAEE 84 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC--------HHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc--------HHHHHH
Confidence 6777788899999999999999988764 00 1122344444443333332 888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 88 VFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 88 lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
.|+...+.. +.+...|..+-.+|...|++++|...|+... .. .|+..
T Consensus 85 ~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al-~l--~p~~~ 131 (162)
T 3rkv_A 85 TSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL-RN--HPAAA 131 (162)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CGGGH
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH-hc--CCCCH
Confidence 888887743 3457788888888888999999988888876 43 46544
No 167
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.35 E-value=0.24 Score=44.71 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCC-------
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLE------- 152 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~------- 152 (295)
..++|.++|++..... +.+..++..+-..|...|++++|...|++.. .. .|+. .+|..+-..|...+.
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKAL-EY--IPNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--STTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHH-Hh--CCChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4667888888776533 3567788889999999999999999999887 43 3553 344444444432211
Q ss_pred ------------HHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 153 ------------AQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 153 ------------~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.+.|.. ...|..+-..+...|++++|...|++....
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 122222 011667778889999999999999998764
No 168
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.25 E-value=0.19 Score=42.84 Aligned_cols=77 Identities=12% Similarity=-0.004 Sum_probs=61.0
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKA 156 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A 156 (295)
..|.+++|...|++..+.. +-+...|..+-..|.+.|++++|...++... .. .| +...|..+-.+|...|+.++|
T Consensus 16 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~~~lg~~~~~~g~~~~A 91 (281)
T 2c2l_A 16 VGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL-EL--DGQSVKAHFFLGQCQLEMESYDEA 91 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4567899999999887742 2367888889999999999999999999877 43 34 455677778888889999888
Q ss_pred hc
Q 048764 157 YE 158 (295)
Q Consensus 157 ~~ 158 (295)
..
T Consensus 92 ~~ 93 (281)
T 2c2l_A 92 IA 93 (281)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.21 E-value=0.11 Score=38.16 Aligned_cols=77 Identities=10% Similarity=-0.085 Sum_probs=41.1
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHH
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE------------EQEITALLKVSAGTGRVE 176 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~ 176 (295)
..+.+.|++++|...|+... ... .-+...|..+-.++...|+.++|.. ...+..+-.++...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al-~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVC-QKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34444555555555555544 221 1123334444444444555554444 111555666677888888
Q ss_pred HHHHHHHHHHH
Q 048764 177 KVYQYLQKLRS 187 (295)
Q Consensus 177 ~a~~ll~~m~~ 187 (295)
+|...+++..+
T Consensus 103 ~A~~~~~~al~ 113 (121)
T 1hxi_A 103 AALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 170
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.11 E-value=0.61 Score=37.87 Aligned_cols=121 Identities=9% Similarity=0.034 Sum_probs=81.4
Q ss_pred hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 60 HFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNV-IPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 60 ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
.|+.-..+...++ +++|...|+++.+... .|. ...+..+..+|.+.|++++|+..|+... .. .|+.
T Consensus 7 ~~~~a~~~~~~g~---------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~--~P~~ 74 (225)
T 2yhc_A 7 IYATAQQKLQDGN---------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RL--NPTH 74 (225)
T ss_dssp HHHHHHHHHHHTC---------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CTTC
T ss_pred HHHHHHHHHHcCC---------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HH--CcCC
Confidence 3444444666666 9999999999987432 122 4578888899999999999999999988 43 3543
Q ss_pred c----cHHHHHHHHHh------------------cCCHHHhhc--------HHH----H-----------------HHHH
Q 048764 138 R----TYDPALFCFCE------------------NLEAQKAYE--------EQE----I-----------------TALL 166 (295)
Q Consensus 138 ~----ty~~ll~~~~~------------------~g~~~~A~~--------e~~----y-----------------~~ll 166 (295)
. .+-.+-.++.. .|+.++|.. .|. + -.+-
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a 154 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA 154 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23222333332 567777766 010 1 2334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcccCCCh
Q 048764 167 KVSAGTGRVEKVYQYLQKLRSTVRCVNE 194 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~~~~~~p~~ 194 (295)
..+.+.|++++|...++++.+. .|+.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~--~p~~ 180 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRD--YPDT 180 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STTS
T ss_pred HHHHHcCcHHHHHHHHHHHHHH--CcCC
Confidence 4578899999999999998874 4543
No 171
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.02 E-value=0.25 Score=39.82 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=75.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHH-cCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCS-NSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSV 107 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~-~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~l 107 (295)
+-..|.+.|++++|+..|++..+.. +-+...|..+-.++. .+. +++|...|++..+.. +-+..+|..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~---------~~~A~~~~~~al~~~-P~~~~a~~~l 128 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQ---------EKDALRMYEKILQLE-ADNLAANIFL 128 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 7778899999999999999988763 345667777766444 455 999999999998743 2357788888
Q ss_pred HHHHHcCCCH--HHHHHHHHHhhhhcCCCCCccc--HHHHHHHHHhcCCHHHhhc
Q 048764 108 ARLAASKKDS--DYAFELIKRMNNEFNVVPRLRT--YDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 108 i~~~~~~g~~--~~A~~l~~~M~~~~gi~P~~~t--y~~ll~~~~~~g~~~~A~~ 158 (295)
-..|...|+. +.+...+.... .|+... +..+-.++...|+.++|..
T Consensus 129 g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~a~~~~g~~~~~~~~~~~A~~ 178 (208)
T 3urz_A 129 GNYYYLTAEQEKKKLETDYKKLS-----SPTKMQYARYRDGLSKLFTTRYEKARN 178 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHccCHHHHHH
Confidence 8887665543 34455555444 344332 2223334455677777754
No 172
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=94.95 E-value=2.1 Score=38.96 Aligned_cols=151 Identities=10% Similarity=0.030 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH
Q 048764 25 NFLISLQSCTKSK---DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE 101 (295)
Q Consensus 25 t~~~li~~~~~~g---~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~ 101 (295)
.+..+-..|.+.| +.++|+..|.+..+.| .++...+..|-.++..+.. .....++|...|+... .| +.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~----~~~d~~~A~~~~~~aa-~g---~~ 248 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATL----GTPDEKTAQALLEKIA-PG---YP 248 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGG----SSCCHHHHHHHHHHHG-GG---ST
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCC----CCCCHHHHHHHHHHHc-CC---CH
Confidence 6666667777788 9999999999998887 4444544455555554410 0012899999999987 33 44
Q ss_pred HHHHHHHHH-H--HcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC-----CHHHhhc---------HHHHHH
Q 048764 102 ALVTSVARL-A--ASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENL-----EAQKAYE---------EQEITA 164 (295)
Q Consensus 102 ~ty~~li~~-~--~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g-----~~~~A~~---------e~~y~~ 164 (295)
..+..|-.. | ...+++++|+.+|++-. ..| +...+..|-..|. .| +.++|+. ...+..
T Consensus 249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~ 323 (452)
T 3e4b_A 249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYY 323 (452)
T ss_dssp HHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555 3 45889999999999988 766 4445555555555 55 7888777 111233
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcc
Q 048764 165 LLKVSAG----TGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 165 ll~~~~~----~g~~~~a~~ll~~m~~~~ 189 (295)
|=..|.. ..+.++|...+.+-.+.|
T Consensus 324 Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 324 LGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 3333333 348889999888877654
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.82 E-value=0.063 Score=49.90 Aligned_cols=103 Identities=11% Similarity=0.027 Sum_probs=75.9
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
..|.+++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|...|++.. ... .-+...|..+-.+|...|+.++|.
T Consensus 18 ~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 18 KAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3445999999999987742 2358899999999999999999999999988 543 234567888888999999999998
Q ss_pred c--------HH----HHHHHHHH--HHhcCCHHHHHHHHH
Q 048764 158 E--------EQ----EITALLKV--SAGTGRVEKVYQYLQ 183 (295)
Q Consensus 158 ~--------e~----~y~~ll~~--~~~~g~~~~a~~ll~ 183 (295)
. .+ .+..+-.+ +.+.|++++|..+++
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8 11 13333333 677788999988887
No 174
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.062 Score=37.90 Aligned_cols=89 Identities=8% Similarity=-0.009 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC----
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN---- 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd---- 100 (295)
.|..+-..+.+.|++++|+..|++..+.. +.+...|..+-..+...+. +++|...|+...+.. |+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~--p~~~~~ 74 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGE--------YTQAIQMCQQGLRYT--STAEHV 74 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSC--SSTTSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC--CCccHH
Confidence 56666677777888888888888776542 3344555555554433332 777887777776532 33
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHH
Q 048764 101 ---EALVTSVARLAASKKDSDYAFELI 124 (295)
Q Consensus 101 ---~~ty~~li~~~~~~g~~~~A~~l~ 124 (295)
...+..+-.++...|+.+.|...|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 334444444444444444444333
No 175
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.71 E-value=0.6 Score=32.65 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHH
Q 048764 99 PNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEK 177 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~ 177 (295)
-+...|..+-..|...|++++|...|+... ... |+ ...|..+-.+|...|+.++|.. .|...|...-..++...
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--p~~~~a~~~lg~~~~~~g~~~~A~~--~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELV-ETD--PDYVGTYYHLGKLYERLDRTDDAID--TYAQGIEVAREEGTQKD 79 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--TTCTHHHHHHHHHHHHTTCHHHHHH--HHHHHHHHHHHHSCHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC--CCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhhhcCCchhH
Confidence 357788899999999999999999999988 543 44 4456666666666666666643 12223333334444444
Q ss_pred HHHHHHHHH
Q 048764 178 VYQYLQKLR 186 (295)
Q Consensus 178 a~~ll~~m~ 186 (295)
+.++...+.
T Consensus 80 ~~~l~~~l~ 88 (100)
T 3ma5_A 80 LSELQDAKL 88 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444433333
No 176
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.59 E-value=0.3 Score=47.60 Aligned_cols=88 Identities=8% Similarity=0.053 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--- 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--- 158 (295)
++.|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+. . |..+...|...|+.+....
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~-d---------~~~l~~l~~~~~~~~~~~~~~~ 731 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH-D---------LESLFLLHSSFNNKEGLVTLAK 731 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-C---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc-C---------hhhhHHHHHHcCCHHHHHHHHH
Confidence 77777775543 577999999999999999999999999987 2 4455555555555554333
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 048764 159 ----EQEITALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 159 ----e~~y~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...|+.-..+|.+.|++++|.+++.++
T Consensus 732 ~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 732 DAETTGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 222444444555555666555555553
No 177
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=94.54 E-value=0.15 Score=35.79 Aligned_cols=69 Identities=9% Similarity=0.027 Sum_probs=51.0
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
+...+..+-..+...+. +++|...|++..+.. +.+...|..+-..|...|++++|...|+... . +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~--~~p~ 70 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL--------YREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-R--YTST 70 (111)
T ss_dssp HHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-T--SCSS
T ss_pred hHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-H--hCCC
Confidence 34455555554444332 999999999987743 3467889999999999999999999999987 4 3466
Q ss_pred c
Q 048764 137 L 137 (295)
Q Consensus 137 ~ 137 (295)
.
T Consensus 71 ~ 71 (111)
T 2l6j_A 71 A 71 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.46 E-value=0.19 Score=49.02 Aligned_cols=123 Identities=7% Similarity=0.058 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc-C-CCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSL-N-FRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~-g-~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|...+....+.++++.|..+|..+.+. + ..+.++...+.|.....++ .+.|++||+...+. .+-+..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d---------~e~Ar~ife~~Lk~-~p~~~~ 505 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD---------TKTACKVLELGLKY-FATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC---------CHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHH-CCCchH
Confidence 7888888888899999999999999876 3 3445555555555333333 78999999998775 445677
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC--CcccHHHHHHHHHhcCCHHHhhc
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVP--RLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P--~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.|...++.....|+.+.|..+|+... ...-.| ....|...+.--.+.|+.+.+..
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal-~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSI-DKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHT-TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 78889998888999999999999987 443211 23467777777778898877655
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.31 E-value=0.42 Score=43.88 Aligned_cols=116 Identities=6% Similarity=-0.105 Sum_probs=79.7
Q ss_pred HhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC-CC-------------HHHHHHHHHHHHcCCCHHHHHHH
Q 048764 59 HHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVI-PN-------------EALVTSVARLAASKKDSDYAFEL 123 (295)
Q Consensus 59 ~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~-pd-------------~~ty~~li~~~~~~g~~~~A~~l 123 (295)
..|..+-. ++..+. +++|...|++..+..-. ++ ..+|+.+-.+|.+.|++++|+..
T Consensus 269 ~~~~~~G~~~~~~g~---------~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 339 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGK---------YMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC 339 (457)
T ss_dssp HHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---------HHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34445545 444555 99999999998773211 11 58899999999999999999999
Q ss_pred HHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc--------HH----HHHHHHHHHHhcCCHHHHH-HHHHHH
Q 048764 124 IKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE--------EQ----EITALLKVSAGTGRVEKVY-QYLQKL 185 (295)
Q Consensus 124 ~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~--------e~----~y~~ll~~~~~~g~~~~a~-~ll~~m 185 (295)
|+... ... ..+...|..+-.+|...|+.++|.. .| .|..+-.++.+.++.+++. .++..|
T Consensus 340 ~~~al-~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 340 CDKAL-GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHH-HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988 543 2345667777788888888888877 11 2555556666666666554 333443
No 180
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.46 Score=37.98 Aligned_cols=91 Identities=8% Similarity=0.104 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhh
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
++|.++.|.++-+++ -+...|..|-+..-..|+++.|.+.|.... -|..|+--|.-.|+.++-.
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHTCHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhCCHHHHH
Confidence 344599999998887 478999999999999999999999999988 4667777777788877654
Q ss_pred c-------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 158 E-------EQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 158 ~-------e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
. ...|+.-...+.-.|+++++.++|.+
T Consensus 81 kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 81 KMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4 23377777777788888888888765
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=94.16 E-value=1.1 Score=32.15 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 82 LRHGFRVFDQMLSNNVIPNE---ALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~---~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+++|...|+...+... .+. ..+..+-..+...|++++|...|+... ... |+...... +
T Consensus 18 ~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~-~~~--p~~~~~~~---~------------ 78 (129)
T 2xev_A 18 YDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLV-SRY--PTHDKAAG---G------------ 78 (129)
T ss_dssp HHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTSTTHHH---H------------
T ss_pred HHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHC--CCCcccHH---H------------
Confidence 9999999999877432 122 477778888999999999999999987 543 54321100 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChh
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEE 195 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~ 195 (295)
+..+-.++...|+.++|...|++.... .|+..
T Consensus 79 ---~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 79 ---LLKLGLSQYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 334455577788888888888887764 35543
No 182
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.16 E-value=1 Score=31.91 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhh
Q 048764 84 HGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~ 157 (295)
.|...|++..+.. +.+...|..+-..|...|++++|...|+... ... |+ ...|..+-..|...|+.++|.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~--p~~~~~~~~la~~~~~~g~~~~A~ 73 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFD--PTYSVAWKWLGKTLQGQGDRAGAR 73 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHC--CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 4667777776643 3467889999999999999999999999988 543 43 344555555555555555543
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=93.82 E-value=0.33 Score=35.94 Aligned_cols=86 Identities=13% Similarity=-0.097 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCC----cccHHHHHHHHHhcCCHHHhhc------------------
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPR----LRTYDPALFCFCENLEAQKAYE------------------ 158 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~----~~ty~~ll~~~~~~g~~~~A~~------------------ 158 (295)
.++..+-..|...|++++|...+++.. ...- .++ ..++..+-..|...|+.++|..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345556666666777777777776654 2110 011 1355566666666777776666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...+..+-..+...|++++|...+.+....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 011555666777889999999888886553
No 184
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=93.79 E-value=0.45 Score=33.91 Aligned_cols=78 Identities=8% Similarity=-0.072 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHH
Q 048764 41 TAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYA 120 (295)
Q Consensus 41 ~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A 120 (295)
.|+..|++..+.. +-+...+..+-..+...+. +++|...|+...+.. +.+...|..+-..|...|++++|
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 72 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQ--------FDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGA 72 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 4677788777643 3456666666665544442 999999999988743 24577899999999999999999
Q ss_pred HHHHHHhh
Q 048764 121 FELIKRMN 128 (295)
Q Consensus 121 ~~l~~~M~ 128 (295)
...|+...
T Consensus 73 ~~~~~~al 80 (115)
T 2kat_A 73 RQAWESGL 80 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.69 E-value=0.78 Score=30.54 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFC 148 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~ 148 (295)
+++|...|++..+.. +.+..+|..+-..+...|++++|...|++.. ... |+ ...+..+-..+.
T Consensus 25 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~--p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 25 YDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELD--PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcC--CCCHHHHHHHHHHHH
Confidence 999999999887643 3467788899999999999999999999987 543 43 334444444433
No 186
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.29 E-value=1.2 Score=41.48 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|...+....+.++++.|..+|+.+...+..+.+....+.|.....++ .+.|+.+|+...+.- +-+...|
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d---------~~~ar~ife~al~~~-~~~~~~~ 357 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGS---------RATPYNIFSSGLLKH-PDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC---------SHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCC---------hHHHHHHHHHHHHHC-CCCHHHH
Confidence 677777777777788888888888722221112222223333333334 678888888776632 1223445
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
...|+-..+.|+.+.|..+|+... . . ..-|...++.=...|+.+.+..++++
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~-k-----~----------------------~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE-K-----T----------------------SRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC-C-----B----------------------HHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-H-----H----------------------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666776677788888888888863 1 0 11155566655667899989888888
Q ss_pred HHH
Q 048764 185 LRS 187 (295)
Q Consensus 185 m~~ 187 (295)
...
T Consensus 410 ~~~ 412 (493)
T 2uy1_A 410 KMD 412 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.25 E-value=1.2 Score=29.61 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
.|..+-..+.+.|++++|+..|++..+.. +.+...+..+-..+...+. +++|...|++..+.. +-+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-p~~~~~~ 80 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELD-PNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcC-CCCHHHH
Confidence 77778888999999999999999988653 3355666666665544442 999999999987743 2345666
Q ss_pred HHHHHHHHc
Q 048764 105 TSVARLAAS 113 (295)
Q Consensus 105 ~~li~~~~~ 113 (295)
..+-..+..
T Consensus 81 ~~l~~~~~~ 89 (91)
T 1na3_A 81 QNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 665555543
No 188
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.16 E-value=2 Score=32.05 Aligned_cols=112 Identities=17% Similarity=0.079 Sum_probs=76.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc--
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAAS-- 113 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~-- 113 (295)
..++++|+..|.+..+.| .|+.. |=.++..+.. +++|.+.|+.-.+.| +...+..|-..|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~--------~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQIN--------KQKLFQYLSKACELN---SGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSC--------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCC--------HHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCC
Confidence 356889999999999888 33333 3335555553 778999999988765 56777777777777
Q ss_pred --CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 048764 114 --KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAG----TGRVEKVYQYLQKLRS 187 (295)
Q Consensus 114 --~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~----~g~~~~a~~ll~~m~~ 187 (295)
.+++++|+.+|+.-. ..|. ...+.. |=..|.. .++.++|...+++-.+
T Consensus 72 g~~~d~~~A~~~~~~Aa-~~g~---~~a~~~----------------------Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKAC-GLND---QDGCLI----------------------LGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSCCCHHHHHHHHHHHH-HTTC---HHHHHH----------------------HHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHH-cCCC---HHHHHH----------------------HHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 789999999999987 6552 222222 2222333 5677777777777666
Q ss_pred cc
Q 048764 188 TV 189 (295)
Q Consensus 188 ~~ 189 (295)
.|
T Consensus 126 ~g 127 (138)
T 1klx_A 126 LG 127 (138)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=93.14 E-value=0.47 Score=36.14 Aligned_cols=84 Identities=13% Similarity=0.095 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhc-------CC---------CC-CcccHHHHHHHHHhcCCHHHhhc--------
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEF-------NV---------VP-RLRTYDPALFCFCENLEAQKAYE-------- 158 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~-------gi---------~P-~~~ty~~ll~~~~~~g~~~~A~~-------- 158 (295)
+...-..+.+.|++++|+..|.... .. .- .| +...|..+-.+|.+.|+.++|..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555666666666665544 22 00 01 12345555555666666666655
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 159 ----EQEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 159 ----e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
...|..+-.++...|++++|...|.+....
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 112556666778888888888888887653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=92.80 E-value=0.64 Score=40.72 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------------------hHHHHHHHHHcCCCCCCcchHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLH------------------HFNALLYLCSNSATDPSLKDSALRHGF 86 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~------------------ty~~ll~~~~~~~~~~~~~~~~~~~a~ 86 (295)
.|..+-..+.+.|++++|+..|.+..+. .|+.. .|..+-..+...+. +++|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~--------~~~A~ 250 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR--------YDEAI 250 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC--------CHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHH
Confidence 6777778888999999999999997754 24332 33333333333332 66666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 87 RVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 87 ~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..|+..++.. +-+...|..+-.+|...|++++|...|+...
T Consensus 251 ~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 251 GHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666665532 2345666666666777777777777766655
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=92.69 E-value=0.78 Score=40.90 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHH
Q 048764 82 LRHGFRVFDQMLSN---------------NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALF 145 (295)
Q Consensus 82 ~~~a~~lf~~M~~~---------------g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~ 145 (295)
+++|...|++..+. --+-+..+|+.+-..|.+.|++++|+..+++.. .. .|+ ...|..+-.
T Consensus 239 ~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~~--~p~~~~a~~~lg~ 315 (370)
T 1ihg_A 239 WEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL-EI--DPSNTKALYRRAQ 315 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TT--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-Hh--CchhHHHHHHHHH
Confidence 88888888877651 112245788889999999999999999999988 43 454 334444444
Q ss_pred HHHhcCCHHHh
Q 048764 146 CFCENLEAQKA 156 (295)
Q Consensus 146 ~~~~~g~~~~A 156 (295)
+|...|+.++|
T Consensus 316 ~~~~~g~~~eA 326 (370)
T 1ihg_A 316 GWQGLKEYDQA 326 (370)
T ss_dssp HHHHTTCHHHH
T ss_pred HHHHccCHHHH
Confidence 44444444444
No 192
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=92.67 E-value=1.1 Score=40.96 Aligned_cols=93 Identities=11% Similarity=0.075 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--C-CCCC----HHhHHHHHHHHH-cCCCCCCcchHHHHHHHHHHHHHHh----
Q 048764 27 LISLQSCTKSKDLATAISLYESALSL--N-FRLS----LHHFNALLYLCS-NSATDPSLKDSALRHGFRVFDQMLS---- 94 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~--g-~~pd----~~ty~~ll~~~~-~~~~~~~~~~~~~~~a~~lf~~M~~---- 94 (295)
...|..+.+.|++++|+.++++..+. . +.|+ ..+++.|..+|. .++ +++|..++++.+.
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~---------~~eA~~~~~~~L~i~~~ 361 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL---------LEEALFYGTRTMEPYRI 361 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc---------HHHHHHHHHHHHHhHHH
Confidence 34466777889999999999988743 2 2232 356777777555 444 9999999887754
Q ss_pred -CCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 95 -NNV-IPN-EALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 95 -~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.|- -|+ ..+|+.|-..|...|++++|..++++..
T Consensus 362 ~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 362 FFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 221 233 5679999999999999999999998765
No 193
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.65 E-value=0.62 Score=42.72 Aligned_cols=85 Identities=14% Similarity=0.158 Sum_probs=62.7
Q ss_pred cCCHHHHHHHHHHHHhc--C-CCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh-----CCC-CCC-H
Q 048764 36 SKDLATAISLYESALSL--N-FRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS-----NNV-IPN-E 101 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~--g-~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~-----~g~-~pd-~ 101 (295)
.|++++|+.++++..+. . +-|+ ..+++.|..+|...+. +++|..++++.++ .|- .|+ .
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------WEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 57899999999987632 2 2232 3677788886655442 9999999888755 232 244 5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 102 ALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 102 ~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
.+|+.|-..|...|++++|..++++-.
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 569999999999999999999998764
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=91.93 E-value=0.66 Score=43.27 Aligned_cols=103 Identities=7% Similarity=-0.076 Sum_probs=71.6
Q ss_pred CCCcHh--HHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCC-CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Q 048764 19 NPNPET--NFLISLQSCTKSKDLATAISLYESALSL-----N-FRL-SLHHFNALLYLCSNSATDPSLKDSALRHGFRVF 89 (295)
Q Consensus 19 ~~~p~~--t~~~li~~~~~~g~~~~A~~lf~~m~~~-----g-~~p-d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf 89 (295)
...|+. +++.|-..|...|++++|..++++..+- | --| -..+|+.|-.+|...+. +++|..+|
T Consensus 345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~--------~~eA~~~~ 416 (490)
T 3n71_A 345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH--------IEVGHGMI 416 (490)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHH
Confidence 345554 9999999999999999999999987532 2 122 23566667665554442 88888877
Q ss_pred HHHHh-----CCC-CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 048764 90 DQMLS-----NNV-IPN-EALVTSVARLAASKKDSDYAFELIKRMNN 129 (295)
Q Consensus 90 ~~M~~-----~g~-~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~ 129 (295)
++-.+ .|- -|+ ..+.+.|-.++...+.+++|..+|..|++
T Consensus 417 ~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 417 CKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76543 232 133 33455666677788899999999999984
No 195
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=91.89 E-value=5.8 Score=34.33 Aligned_cols=139 Identities=16% Similarity=0.101 Sum_probs=102.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 37 KDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALR--HGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 37 g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~--~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
+++++++.+++.+.+.. +-|-+.|+---.+....+. ++ ++++.++.|.+.+. -|-..|+.--..+.+.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~--------~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l 193 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDL--------HNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSK 193 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhc
Confidence 78999999999998753 4456666655554444442 44 89999999988654 6888998877777777
Q ss_pred CC------HHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc---------H-------HHHHHHHHHHHhc
Q 048764 115 KD------SDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE---------E-------QEITALLKVSAGT 172 (295)
Q Consensus 115 g~------~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~---------e-------~~y~~ll~~~~~~ 172 (295)
+. ++++++.++.+. ... .-|...|+-+-..+.+.|....+.. . ..+..+.+.+.+.
T Consensus 194 ~~~~~~~~~~eEl~~~~~aI-~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 194 KHLATDNTIDEELNYVKDKI-VKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp GGGCCHHHHHHHHHHHHHHH-HHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred cccchhhhHHHHHHHHHHHH-HhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 76 899999999988 554 3455567777667777776433222 1 1266778888899
Q ss_pred CCHHHHHHHHHHHHH
Q 048764 173 GRVEKVYQYLQKLRS 187 (295)
Q Consensus 173 g~~~~a~~ll~~m~~ 187 (295)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999876
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=91.72 E-value=0.45 Score=41.73 Aligned_cols=73 Identities=10% Similarity=-0.019 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEA------------------LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPA 143 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~------------------ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~l 143 (295)
+++|...|++.... .|+.. +|+.+-..|.+.|++++|+..|+... ... ..+...|..+
T Consensus 195 ~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al-~~~-p~~~~a~~~l 270 (338)
T 2if4_A 195 LEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL-TEE-EKNPKALFRR 270 (338)
T ss_dssp CHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH-HHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhC-CCCHHHHHHH
Confidence 88999999887652 25443 78889999999999999999999987 543 2245566666
Q ss_pred HHHHHhcCCHHHhhc
Q 048764 144 LFCFCENLEAQKAYE 158 (295)
Q Consensus 144 l~~~~~~g~~~~A~~ 158 (295)
-.+|...|+.++|..
T Consensus 271 g~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 271 GKAKAELGQMDSARD 285 (338)
T ss_dssp HHHHHTTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 667777777766665
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.63 E-value=1.4 Score=40.34 Aligned_cols=74 Identities=12% Similarity=-0.042 Sum_probs=58.4
Q ss_pred cCCCHHHHHHHHHHhhh--hcCCCCC----cccHHHHHHHHHhcCCHHHhhc--------------------HHHHHHHH
Q 048764 113 SKKDSDYAFELIKRMNN--EFNVVPR----LRTYDPALFCFCENLEAQKAYE--------------------EQEITALL 166 (295)
Q Consensus 113 ~~g~~~~A~~l~~~M~~--~~gi~P~----~~ty~~ll~~~~~~g~~~~A~~--------------------e~~y~~ll 166 (295)
..|++++|..++++... ..-+-|+ ..+|+.|..+|...|++++|.. ...|+.|=
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46789999999987652 1223344 3679999999999999999988 22388888
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 048764 167 KVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 167 ~~~~~~g~~~~a~~ll~~m~ 186 (295)
..|...|++++|..++.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999998853
No 198
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=91.54 E-value=1.6 Score=39.17 Aligned_cols=147 Identities=16% Similarity=0.035 Sum_probs=88.2
Q ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCC-HHhHHH--HHHH--HHcCCCCCCcchHHHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTK-----SKDLATAISLYESALSLNFRLS-LHHFNA--LLYL--CSNSATDPSLKDSALRHGFRVFDQMLS 94 (295)
Q Consensus 25 t~~~li~~~~~-----~g~~~~A~~lf~~m~~~g~~pd-~~ty~~--ll~~--~~~~~~~~~~~~~~~~~a~~lf~~M~~ 94 (295)
.|...+.+... ..++.+|+.+|++..+. .|+ ...|.. +-+. ...+... .........-+.....
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~----~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLD----EKQLAALNTEIDNIVT 269 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCc----hhhHHHHHHHHHHHHh
Confidence 77776655443 23458899999999865 343 233332 2221 1111110 0112222222222222
Q ss_pred -CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcC
Q 048764 95 -NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTG 173 (295)
Q Consensus 95 -~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g 173 (295)
...+.+..+|.++-..+...|++++|...++... ..+ |+...| ..+=..+.-.|
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl-~Ln--~s~~a~----------------------~llG~~~~~~G 324 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI-DLE--MSWLNY----------------------VLLGKVYEMKG 324 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHC--CCHHHH----------------------HHHHHHHHHTT
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hcC--CCHHHH----------------------HHHHHHHHHCC
Confidence 2336788899998888888899999999999999 665 664332 22333456778
Q ss_pred CHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 174 RVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 174 ~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
+.++|.+.+.+-.+ ..|+..|+.....++
T Consensus 325 ~~~eA~e~~~~Alr--L~P~~~t~~~~~~l~ 353 (372)
T 3ly7_A 325 MNREAADAYLTAFN--LRPGANTLYWIENGI 353 (372)
T ss_dssp CHHHHHHHHHHHHH--HSCSHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHh--cCCCcChHHHHhCce
Confidence 88888888877555 378888877665544
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.34 E-value=1.7 Score=39.61 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=62.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhh--cCCCCC----cccHHHHHHHHHhcCCHHHhhc--------------------HH
Q 048764 107 VARLAASKKDSDYAFELIKRMNNE--FNVVPR----LRTYDPALFCFCENLEAQKAYE--------------------EQ 160 (295)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~--~gi~P~----~~ty~~ll~~~~~~g~~~~A~~--------------------e~ 160 (295)
.|.-+...|++++|..++++.... .-+.|+ ..+++.|...|...|++++|.. ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 355566789999999999987621 122333 3578999999999999999988 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 161 EITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 161 ~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
.|+.|-..|...|++++|..++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 37888888999999999999998853
No 200
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=91.23 E-value=3.5 Score=39.90 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=72.3
Q ss_pred CCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 56 LSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 56 pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
.+...|..|-.+|-..+. ++.|.+.|..+.. |..+...|...|+.+....+-+... ..|
T Consensus 679 ~~~~~W~~la~~al~~~~--------~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~-~~~--- 737 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFN--------FKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE-TTG--- 737 (814)
T ss_dssp CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH-HTT---
T ss_pred CcHhHHHHHHHHHHHcCC--------HHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH-HcC---
Confidence 456788888886655553 9999999998854 5567777777888887766666555 444
Q ss_pred CcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 048764 136 RLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQK 184 (295)
Q Consensus 136 ~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~ 184 (295)
-|+....+|.+.|++++| ++.|.+.+++++|..+-+.
T Consensus 738 ---~~~~A~~~~~~~g~~~~a---------~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 738 ---KFNLAFNAYWIAGDIQGA---------KDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp ---CHHHHHHHHHHHTCHHHH---------HHHHHHTTCHHHHHHHHHH
T ss_pred ---chHHHHHHHHHcCCHHHH---------HHHHHHcCChHHHHHHHHH
Confidence 457777778888888764 7778999999999998776
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.08 E-value=4.5 Score=31.53 Aligned_cols=109 Identities=12% Similarity=0.011 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-----CHH-----hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFR-L-----SLH-----HFNALLYLCSNSATDPSLKDSALRHGFRVFDQML 93 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~-p-----d~~-----ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~ 93 (295)
.+...=..+.+.|++++|+..|++..+..-. | +.. .|+.+-.++...+. +++|+..|+.-+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~~~~kAL 84 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHSADKAL 84 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHHHHHHHH
Confidence 5555666788899999999999988754311 1 222 66666664444442 888888888877
Q ss_pred hC-----CCCCC-HHHH----HHHHHHHHcCCCHHHHHHHHHHhhh----hcCCCCCcccHH
Q 048764 94 SN-----NVIPN-EALV----TSVARLAASKKDSDYAFELIKRMNN----EFNVVPRLRTYD 141 (295)
Q Consensus 94 ~~-----g~~pd-~~ty----~~li~~~~~~g~~~~A~~l~~~M~~----~~gi~P~~~ty~ 141 (295)
+. -+.|| ...| ...-.++...|++++|+..|+.-.. ..|+.+.....-
T Consensus 85 ~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 85 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 63 12565 4567 8888899999999999999998752 456666544433
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.95 E-value=0.88 Score=31.73 Aligned_cols=82 Identities=9% Similarity=-0.005 Sum_probs=55.4
Q ss_pred CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhc-CCCC
Q 048764 57 SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEF-NVVP 135 (295)
Q Consensus 57 d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~-gi~P 135 (295)
+...+..+-..+...+. +++|...|+...+... -+...|..+-.+|...|++++|.+.|++.. .. .-.+
T Consensus 6 ~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~~~~~ 75 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN--------ASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI-EVAREEG 75 (100)
T ss_dssp CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHS
T ss_pred CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhhhcCC
Confidence 44555555554444442 9999999999987542 346789999999999999999999999876 32 1124
Q ss_pred CcccHHHHHHHHH
Q 048764 136 RLRTYDPALFCFC 148 (295)
Q Consensus 136 ~~~ty~~ll~~~~ 148 (295)
+.....-+...+.
T Consensus 76 ~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 76 TQKDLSELQDAKL 88 (100)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4444444444433
No 203
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=89.83 E-value=3.3 Score=32.32 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhCCCC-C-----CHH-----HHHHHHHHHHcCCCHHHHHHHHHHhhhhc-----CCCCCcccHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVI-P-----NEA-----LVTSVARLAASKKDSDYAFELIKRMNNEF-----NVVPRLRTYDPALF 145 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~-p-----d~~-----ty~~li~~~~~~g~~~~A~~l~~~M~~~~-----gi~P~~~ty~~ll~ 145 (295)
+++|...|+.-.+.... | +.. .|+.+-.++.+.|++++|+..|+.-. .. .+.|+ ...++|.
T Consensus 27 ~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL-~l~n~~~e~~pd--~~~A~~~ 103 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQD--EGKLWIS 103 (159)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTST--HHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhhhccccCCCc--hHHHHHH
Confidence 99999999988763211 1 333 89999999999999999999999887 43 22454 2233333
Q ss_pred HHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 146 CFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 146 ~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
++ ...=.++...|++++|+..|++-.+
T Consensus 104 ~~---------------~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 104 AV---------------YSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HH---------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH---------------HhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 32 3344457788888888888888654
No 204
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=89.20 E-value=12 Score=33.73 Aligned_cols=141 Identities=12% Similarity=0.030 Sum_probs=88.9
Q ss_pred HHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCHHhHHHHHHH----HHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 27 LISLQSCTKS----KDLATAISLYESALSLNFRLSLHHFNALLYL----CSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 27 ~~li~~~~~~----g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~----~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
..+-..|... ++.++|+..|++.. .|.+ ..+..|-.+ ...++ .++|...|+.-.+.|
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~---~a~~~Lg~~~~~~~~~~d---------~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA-PGYP---ASWVSLAQLLYDFPELGD---------VEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGST---HHHHHHHHHHHHSGGGCC---------HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCH---HHHHHHHHHHHhCCCCCC---------HHHHHHHHHHHHHCC--
Confidence 4455555444 68999999999887 5433 333333332 23333 899999999988876
Q ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh----cCCHHHhhc----------H
Q 048764 99 PNEALVTSVARLAASKK-----DSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE----NLEAQKAYE----------E 159 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g-----~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~----~g~~~~A~~----------e 159 (295)
+...+..|-..|. .| ++++|+..|..-. .-+...+..|-..|.. ..+.++|+. .
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 5666777766666 44 8999999998754 3344455555555554 237777777 1
Q ss_pred HHHHHHHHHHH----hcCCHHHHHHHHHHHHHcc
Q 048764 160 QEITALLKVSA----GTGRVEKVYQYLQKLRSTV 189 (295)
Q Consensus 160 ~~y~~ll~~~~----~~g~~~~a~~ll~~m~~~~ 189 (295)
..+..|-..|. ...+.++|...+..-.+.|
T Consensus 355 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 355 SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 11233333333 2457888888888877655
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=87.95 E-value=6.6 Score=29.06 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 80 SALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 80 ~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
...++|.+.|+.-.+.|. |+.. |-..|...+.+++|+++|+.-. ..| +...+..|-..|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa-~~g---~~~a~~~Lg~~y~~ 69 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKAC-ELN---SGNGCRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHH-cCC---CHHHHHHHHHHHHc
Confidence 458899999999988873 4443 5566666778889999999988 655 33344444444443
No 206
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=87.92 E-value=2.4 Score=28.82 Aligned_cols=55 Identities=7% Similarity=0.113 Sum_probs=32.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHH-hHHHHHHHH-HcCCCCCCcchHHHHHHHHHHHHHHhC
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLH-HFNALLYLC-SNSATDPSLKDSALRHGFRVFDQMLSN 95 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~-ty~~ll~~~-~~~~~~~~~~~~~~~~a~~lf~~M~~~ 95 (295)
..+.+.|++++|+..|++..+.. +-+.. .|..+-..+ ..+. +++|...|+...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~---------~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGD---------WQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhc
Confidence 34566777777777777776542 22333 444444433 3333 77777777776653
No 207
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=87.65 E-value=2.1 Score=36.78 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC--HHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLS--LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN--EALVT 105 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd--~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd--~~ty~ 105 (295)
-..|.+.+++++|+..|+...... .|. ...+..|=.++...+. +++|+..|++.......|. .....
T Consensus 142 a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~--------~~eAl~~l~~a~~g~~~P~~~~da~~ 212 (282)
T 4f3v_A 142 AVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLAL--------FTEAERRLTEANDSPAGEACARAIAW 212 (282)
T ss_dssp HHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHhcCCCCccccHHHHH
Confidence 347889999999999998554322 111 1133333336666664 9999999999875443254 33556
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
..-.++.+.|+.++|..+|+++. .. .|+
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~-a~--~P~ 240 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQ-TT--HPE 240 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH-HH--SCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hc--CCc
Confidence 66677788999999999999998 54 465
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=87.38 E-value=2.5 Score=32.78 Aligned_cols=83 Identities=13% Similarity=0.159 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCC
Q 048764 39 LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP--NEALVTSVARLAASKKD 116 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p--d~~ty~~li~~~~~~g~ 116 (295)
+..+.+-|.+....|.......|+--+.++.... ...++++..+|++..+.. .| +...+=.|--+|.+.|+
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~------~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKY------NDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSS------HHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCC------HHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccC
Confidence 4455555665555554333334443333433221 113667777777776654 23 22333334445577777
Q ss_pred HHHHHHHHHHhh
Q 048764 117 SDYAFELIKRMN 128 (295)
Q Consensus 117 ~~~A~~l~~~M~ 128 (295)
+++|.++|+...
T Consensus 87 Y~~A~~y~~~lL 98 (152)
T 1pc2_A 87 YEKALKYVRGLL 98 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777766
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=86.64 E-value=1.2 Score=34.84 Aligned_cols=110 Identities=13% Similarity=0.062 Sum_probs=72.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHc-CCCCC-CcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 048764 34 TKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSN-SATDP-SLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLA 111 (295)
Q Consensus 34 ~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~-~~~~~-~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~ 111 (295)
.+.+.+++|+..|+...+.. +-+...|+.+=.++.. +.... ...-+.+++|+..|++..+-.- -+..+|..+=.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-CcHHHHHHHHHHH
Confidence 34566889999999887664 4466666655553322 22000 0000126799999999877332 2567888898988
Q ss_pred HcC-----------CCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHH
Q 048764 112 ASK-----------KDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFC 148 (295)
Q Consensus 112 ~~~-----------g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~ 148 (295)
... |++++|...|++.. . +.|+...|.-.|...-
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl-~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAV-D--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHH-H--HCTTCHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHH-H--hCCCCHHHHHHHHHHH
Confidence 876 48999999999987 4 4688777766665443
No 210
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.21 E-value=2.8 Score=30.13 Aligned_cols=63 Identities=10% Similarity=0.182 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
.=++++-++.+-...+.|+..+..+.+++|-+-.|+..|.++|+..+.+. .+....|..+|+-
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lqE 88 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHHH
Confidence 44677777888888899999999999999999999999999999988333 3444568777764
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=84.65 E-value=12 Score=28.85 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=71.5
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCC
Q 048764 77 LKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK---DSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLE 152 (295)
Q Consensus 77 ~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g---~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~ 152 (295)
.....+..+.+-|.+....|. ++..+.-.+--+++++. +.+++..+|++.. ... .|+ .+-+.
T Consensus 9 l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-~~~-~p~~~rd~l----------- 74 (152)
T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-PKG-SKEEQRDYV----------- 74 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHS-CHHHHHHHH-----------
T ss_pred CCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcC-CccchHHHH-----------
Confidence 344568889999998877666 67777777777888888 6679999999988 544 342 11110
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 153 AQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 153 ~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
|+. =-++.+.|++++|.++++.+.+ .+|+..-...+...+
T Consensus 75 ---------Y~L-Av~~~kl~~Y~~A~~y~~~lL~--ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 75 ---------FYL-AVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERLI 114 (152)
T ss_dssp ---------HHH-HHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ---------HHH-HHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 222 2235799999999999999877 477766665555444
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=83.48 E-value=30 Score=32.51 Aligned_cols=175 Identities=11% Similarity=0.010 Sum_probs=106.5
Q ss_pred HHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCC--CCcchHHHHHHHHHHHHHHhCCCC
Q 048764 25 NFLISLQSC----TKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATD--PSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 25 t~~~li~~~----~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~--~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
.|..++..+ .....-++|+..++++.... +-+...|+.-=......+.+ .......++++.+.++.+.+.. +
T Consensus 27 ~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-p 104 (567)
T 1dce_A 27 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-P 104 (567)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-C
Confidence 555543333 23344578899999998653 22223333221111111100 0001112789999999998754 3
Q ss_pred CCHHHHHHHHHHHHcCC--CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcC-CHHHhhc------------HHHHH
Q 048764 99 PNEALVTSVARLAASKK--DSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENL-EAQKAYE------------EQEIT 163 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g--~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g-~~~~A~~------------e~~y~ 163 (295)
-+..+|+.---.+.+.| ++++++++++.|. ... .-|...|+----.+.+.| ..+++++ ...|+
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l-~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFL-EAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHH-hhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 57888998888888888 7799999999999 654 235555666555666777 6666666 22244
Q ss_pred HHHHHHHh--------------cCCHHHHHHHHHHHHHcccCC-ChhHHHHHHHHHh
Q 048764 164 ALLKVSAG--------------TGRVEKVYQYLQKLRSTVRCV-NEETGKIIEDWFS 205 (295)
Q Consensus 164 ~ll~~~~~--------------~g~~~~a~~ll~~m~~~~~~p-~~~t~~~l~~~~~ 205 (295)
..-..+.+ .+.++++.+++.+.... .| +.+.|......+.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHh
Confidence 33333333 25678999999887763 45 4567777666553
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=81.20 E-value=9.2 Score=25.62 Aligned_cols=48 Identities=8% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHhhhhc
Q 048764 82 LRHGFRVFDQMLSNNVIPNEA-LVTSVARLAASKKDSDYAFELIKRMNNEF 131 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~-ty~~li~~~~~~g~~~~A~~l~~~M~~~~ 131 (295)
+++|...|++..+.. +.+.. .|..+-..|...|++++|...|+... ..
T Consensus 16 ~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 64 (99)
T 2kc7_A 16 IENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI-EL 64 (99)
T ss_dssp HHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hc
Confidence 899999999987743 23456 88888889999999999999999987 44
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=80.25 E-value=8.5 Score=35.55 Aligned_cols=144 Identities=8% Similarity=0.027 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcC-CCCCCcchHHHHHH-HHHHHHHHhC-----CC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS-ATDPSLKDSALRHG-FRVFDQMLSN-----NV 97 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~-~~~~~~~~~~~~~a-~~lf~~M~~~-----g~ 97 (295)
.|-..+.-+.+.|+++.|..+|+..... |+...... .+... .. ++. ..+++..... +.
T Consensus 215 lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~---------~~~~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDE---------EAVYGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTC---------THHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcch---------hHHHHHHHHHHHhhccchhhh
Confidence 6666777778899999999999999887 44332211 22211 10 111 1111111000 00
Q ss_pred CC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-----------HHH-H
Q 048764 98 IP---NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-----------EQE-I 162 (295)
Q Consensus 98 ~p---d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-----------e~~-y 162 (295)
.+ ....|-..++.+-+.++++.|..+|+... ..++.+.+....+.+...+ .++.+.|.. .++ +
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCHHHH
Confidence 11 13456666776666788999999999874 3222112111112233222 235666665 122 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKL 185 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m 185 (295)
...++.....|+.+.|..++.+.
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 55667677889999999999996
No 215
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.12 E-value=7.3 Score=34.84 Aligned_cols=108 Identities=10% Similarity=-0.044 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHH---cCCCHHHHHHHHHHhhhh-cC-CCCCcc------------------cHHHHHHHHHhcCCHHH
Q 048764 99 PNEALVTSVARLAA---SKKDSDYAFELIKRMNNE-FN-VVPRLR------------------TYDPALFCFCENLEAQK 155 (295)
Q Consensus 99 pd~~ty~~li~~~~---~~g~~~~A~~l~~~M~~~-~g-i~P~~~------------------ty~~ll~~~~~~g~~~~ 155 (295)
-|...|..++.... ..|+.+.|.+.+.+...- .| .-|+.. ....++..+...|+.++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 35556666665432 357888888877776521 12 112210 12234556667888888
Q ss_pred hhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cccCCChhHHHHHHHHHhc
Q 048764 156 AYE------------EQEITALLKVSAGTGRVEKVYQYLQKLRS-----TVRCVNEETGKIIEDWFSG 206 (295)
Q Consensus 156 A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~~-----~~~~p~~~t~~~l~~~~~~ 206 (295)
+.. |.-|..|+.++.+.|+..+|++.++++++ .|+.|++.+..+.......
T Consensus 190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~~ 257 (388)
T 2ff4_A 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ 257 (388)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHcC
Confidence 775 55699999999999999999999998754 5999999999888777644
No 216
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.87 E-value=7.1 Score=29.67 Aligned_cols=63 Identities=10% Similarity=0.182 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC 146 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~ 146 (295)
.=+.++-++.+....+.|+.....+.+++|-+-.|+..|.++|+-.+.+. .+....|..+|+-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 34566666777778889999999999999999999999999999988333 4555567777764
No 217
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=77.24 E-value=12 Score=29.00 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCCCHHh-HHHH----HH--HHHcCCCCCCcchHHHHHHHHHHHH
Q 048764 25 NFLISLQSCTKSKDL------ATAISLYESALSLNFRLSLHH-FNAL----LY--LCSNSATDPSLKDSALRHGFRVFDQ 91 (295)
Q Consensus 25 t~~~li~~~~~~g~~------~~A~~lf~~m~~~g~~pd~~t-y~~l----l~--~~~~~~~~~~~~~~~~~~a~~lf~~ 91 (295)
+|=..|...-+.|+. +..+++|+..... ++|+... +..- |+ .+.... +.++|+++|+.
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~--------D~d~aR~vy~~ 85 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQ--------EPDDARDYFQM 85 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHH--------CGGGCHHHHHH
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHH
Confidence 666666667777888 8888999988764 6776421 1111 11 111111 27889999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 92 MLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 92 M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
+++.+=.. ...|..-..--.+.|+++.|..++..-. ..+.+|.
T Consensus 86 a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai-G~~~k~~ 128 (161)
T 4h7y_A 86 ARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV-ERGAVPL 128 (161)
T ss_dssp HHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBCH
T ss_pred HHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh-ccCCCcH
Confidence 97643334 7777777777778999999999999887 5554443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=76.90 E-value=10 Score=33.84 Aligned_cols=74 Identities=5% Similarity=-0.073 Sum_probs=58.2
Q ss_pred CCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 54 FRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 54 ~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
.+.+..+|..+-. +...++ +++|...++.....+ |+...|..+=..+...|++++|.+.|++-. .
T Consensus 273 ~~~~a~~~~alal~~l~~gd---------~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al-r-- 338 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGK---------TDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF-N-- 338 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--
T ss_pred CCcCHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-h--
Confidence 3667777777755 445666 999999999998865 888888888888899999999999998866 3
Q ss_pred CCCCcccHH
Q 048764 133 VVPRLRTYD 141 (295)
Q Consensus 133 i~P~~~ty~ 141 (295)
+.|...||.
T Consensus 339 L~P~~~t~~ 347 (372)
T 3ly7_A 339 LRPGANTLY 347 (372)
T ss_dssp HSCSHHHHH
T ss_pred cCCCcChHH
Confidence 357766654
No 219
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.69 E-value=27 Score=34.28 Aligned_cols=122 Identities=11% Similarity=0.123 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHh------CCCCC
Q 048764 27 LISLQSCTKSKD-LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLS------NNVIP 99 (295)
Q Consensus 27 ~~li~~~~~~g~-~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~------~g~~p 99 (295)
..++.-+.-.++ ++.|+.+|+++....-.-+.....++|........ .--+|.++..+..+ ...++
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~-------~Ev~av~ll~~~l~~~~~~~~~l~~ 324 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIET-------KELDMITILNETLDPLLSLLNDLPP 324 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGG-------GHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhhhhhhhhcc
Confidence 334444444555 68899999999876433333333444554443331 02234444433321 12222
Q ss_pred -CHH---HH---HHHH----HHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhc
Q 048764 100 -NEA---LV---TSVA----RLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 100 -d~~---ty---~~li----~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
+.. .. ..|+ +-+-..|+++.|+.+-++-. .+.|+ -.||..|..+|.+.|+++.|+-
T Consensus 325 ~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 325 RDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 211 11 1233 33445899999999999876 44676 5689999999999999998866
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=75.23 E-value=14 Score=25.76 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=49.7
Q ss_pred hHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC
Q 048764 60 HFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSN------NVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFN 132 (295)
Q Consensus 60 ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~------g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g 132 (295)
-+-.|=. ++..++ +..|...|+...+. .-.+...+|..|-.+|.+.|+++.|+.++++.. .
T Consensus 7 dc~~lG~~~~~~~~---------y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al-~-- 74 (104)
T 2v5f_A 7 DCFELGKVAYTEAD---------YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL-E-- 74 (104)
T ss_dssp HHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-H--
T ss_pred HHHHHHHHHHHccc---------hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH-h--
Confidence 3334444 555565 89999888876552 123567889999999999999999999999987 4
Q ss_pred CCCCccc
Q 048764 133 VVPRLRT 139 (295)
Q Consensus 133 i~P~~~t 139 (295)
+.|+...
T Consensus 75 l~P~~~~ 81 (104)
T 2v5f_A 75 LDPEHQR 81 (104)
T ss_dssp HCTTCHH
T ss_pred cCCCCHH
Confidence 3576543
No 221
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.10 E-value=12 Score=33.33 Aligned_cols=57 Identities=11% Similarity=0.056 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhh----hcCCCCCccc
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNN----EFNVVPRLRT 139 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~----~~gi~P~~~t 139 (295)
..+|...+..+... -+-++..|-.+|.+|.+.|+..+|++.|+.... ..|+.|...+
T Consensus 187 ~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 187 ASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 77777777776553 246888899999999999999999888887653 4688888665
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=73.94 E-value=25 Score=30.28 Aligned_cols=112 Identities=11% Similarity=0.032 Sum_probs=73.8
Q ss_pred HHHHHHH-HHHhc--CC------HHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHH
Q 048764 25 NFLISLQ-SCTKS--KD------LATAISLYESALSLNFRLS---LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQM 92 (295)
Q Consensus 25 t~~~li~-~~~~~--g~------~~~A~~lf~~m~~~g~~pd---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M 92 (295)
.|..++. .+... |+ +..|..++++..+. -|+ -..|++|-.+|..... .--|..++|.+.|++-
T Consensus 156 ~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp---~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 156 YWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPE---SFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCT---TTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCC---ccCCCHHHHHHHHHHH
Confidence 6666654 44443 32 45666666666553 344 5678888887776210 0001299999999998
Q ss_pred HhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHhhhhcCCC--CCcccHHH
Q 048764 93 LSNNVIPNEALVTSVARLAASK-KDSDYAFELIKRMNNEFNVV--PRLRTYDP 142 (295)
Q Consensus 93 ~~~g~~pd~~ty~~li~~~~~~-g~~~~A~~l~~~M~~~~gi~--P~~~ty~~ 142 (295)
++-+-.-+..++....+.++.. |+.++|.+++++-. ..... |+....+.
T Consensus 231 L~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL-~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 231 TRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL-AIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH-HCCGGGCSSCHHHHH
T ss_pred HHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH-cCCCCCCCChhHHHH
Confidence 8843222478888888999885 99999999999988 66655 66544333
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=72.47 E-value=34 Score=27.02 Aligned_cols=113 Identities=10% Similarity=0.060 Sum_probs=80.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVAR 109 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~ 109 (295)
....+.|+++.|+++-+++ -+...|..|-. +...+. ++-|.+.|..... |..|.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn---------~~lAe~cy~~~~D---------~~~L~~ 68 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGN---------ASLAEMIYQTQHS---------FDKLSF 68 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTC---------HHHHHHHHHHTTC---------HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCC---------hHHHHHHHHHhCC---------HHHHHH
Confidence 3455689999999998876 35789999999 667777 9999999998754 556666
Q ss_pred HHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 048764 110 LAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQ 183 (295)
Q Consensus 110 ~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~ 183 (295)
.|.-.|+.+.-..+-+.-. ..| -|+.....+.-.|+++++ ++.|.+.|++.+|.-+-+
T Consensus 69 Ly~~tg~~e~L~kla~iA~-~~g------~~n~af~~~l~lGdv~~~---------i~lL~~~~r~~eA~~~A~ 126 (177)
T 3mkq_B 69 LYLVTGDVNKLSKMQNIAQ-TRE------DFGSMLLNTFYNNSTKER---------SSIFAEGGSLPLAYAVAK 126 (177)
T ss_dssp HHHHHTCHHHHHHHHHHHH-HTT------CHHHHHHHHHHHTCHHHH---------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHH-HCc------cHHHHHHHHHHcCCHHHH---------HHHHHHCCChHHHHHHHH
Confidence 6777788776655544433 444 467777778888888775 455566666666655443
No 224
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=72.39 E-value=10 Score=30.23 Aligned_cols=147 Identities=14% Similarity=0.043 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH---hHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSLH---HFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~---ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
+.|...++.|+.+....+++.+.+.|..++.. -++.|..++..+. .+ +++.+.+.|..|+....
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---------~~----~v~~Ll~~g~~~~~~~~ 77 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL---------PS----VVRLLVTAGASPMALDR 77 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC---------HH----HHHHHHHTTCCTTCCCT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCC---------HH----HHHHHHHcCCCccccCC
Confidence 45677788899999888888877777665543 3445555666665 43 44555566765543221
Q ss_pred --HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc---cHHHHHHHHHhcCCHHHhhc-----------H-HHHHHHHH
Q 048764 105 --TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR---TYDPALFCFCENLEAQKAYE-----------E-QEITALLK 167 (295)
Q Consensus 105 --~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~---ty~~ll~~~~~~g~~~~A~~-----------e-~~y~~ll~ 167 (295)
.+.+...+..|+.+....+++... ..++.++.. -.+ .|...+..|+.+-... . ..-.+.|.
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAA-PGTLDLEARNYDGLT-ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI 155 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSC-TTSCCTTCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCC-CccccccccCcCCCc-HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHH
Confidence 234455567788877777766654 333333332 223 3444455666554333 0 11234444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcccCCC
Q 048764 168 VSAGTGRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 168 ~~~~~g~~~~a~~ll~~m~~~~~~p~ 193 (295)
..+..|+.+-+ +.+.+.|..++
T Consensus 156 ~A~~~~~~~~v----~~Ll~~g~~~~ 177 (241)
T 1k1a_A 156 HAVENNSLSMV----QLLLQHGANVN 177 (241)
T ss_dssp HHHHTTCHHHH----HHHHHTTCCTT
T ss_pred HHHHcCCHHHH----HHHHHcCCCCC
Confidence 55566776543 33444455554
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=70.02 E-value=53 Score=28.26 Aligned_cols=117 Identities=7% Similarity=-0.009 Sum_probs=75.0
Q ss_pred CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc-----CCCHHHHHHHHHHh
Q 048764 57 SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN---EALVTSVARLAAS-----KKDSDYAFELIKRM 127 (295)
Q Consensus 57 d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd---~~ty~~li~~~~~-----~g~~~~A~~l~~~M 127 (295)
....|..++. .+......+..--+.+..|..++++..+- -|+ -..|+.|...|.+ -|+.++|.++|++-
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA 230 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL 230 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH
Confidence 3455666665 44333211222223467788888877763 355 6789999999999 49999999999998
Q ss_pred hhhcCCCCC--cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcccC--CChhHHHHH
Q 048764 128 NNEFNVVPR--LRTYDPALFCFCENLEAQKAYEEQEITALLKVSAG-TGRVEKVYQYLQKLRSTVRC--VNEETGKII 200 (295)
Q Consensus 128 ~~~~gi~P~--~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~-~g~~~~a~~ll~~m~~~~~~--p~~~t~~~l 200 (295)
. .. .|+ ..++ ...-+.+++ .|+.+++..+|++-....-. |+...++.+
T Consensus 231 L-~L--nP~~~id~~----------------------v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 231 T-RY--CSAHDPDHH----------------------ITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp H-HH--CCTTCSHHH----------------------HHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred H-Hh--CCCCCchHH----------------------HHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 7 43 464 3442 233344556 47888888888887775555 555544443
No 226
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=68.06 E-value=30 Score=30.19 Aligned_cols=146 Identities=10% Similarity=0.005 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
..+.+|.-|...||+++|..-+.++......| ...+..+..+.-++. ...+.+..++..+.+.|+-+.....
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~-------~~re~~~~Ll~~L~~~~~is~~~~~ 84 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSA-------IAREHMGQLLHQLLCAGHLSTAQYY 84 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCH-------HHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCH-------HHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 67789999999999999999998885322111 122222222332222 1356788999999988775554443
Q ss_pred HHHHHHHHc----CCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHH----HHhcCCHHHhhcHHHHHHHHHHHHhcCCHH
Q 048764 105 TSVARLAAS----KKDSDYAFELIKRMNNEFNVVPRLRTYDPALFC----FCENLEAQKAYEEQEITALLKVSAGTGRVE 176 (295)
Q Consensus 105 ~~li~~~~~----~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~----~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~ 176 (295)
..+-+.+.. .=|...|...+..+. ..-+.-...+...++.. +...|.... -...++..+++....+
T Consensus 85 ~Gf~~~~~~l~Dl~lDiP~a~~~La~~v-~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~-----fl~~vl~~l~~~~g~~ 158 (339)
T 1ug3_A 85 QGLYEILELAEDMEIDIPHVWLYLAELV-TPILQEGGVPMGELFREITKPLRPLGKAAS-----LLLEILGLLCKSMGPK 158 (339)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHHHHH-GGGGSTTSCCHHHHHHHHTTTHHHHTCHHH-----HHHHHHHHHHHHHCHH
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHH-HHHHHCCCCCHHHHHHHHHHhhhccchHHH-----HHHHHHHHHHHHcCHH
Confidence 333333333 225566777777776 44333334443333322 222333222 2455555565555555
Q ss_pred HHHHHHHH
Q 048764 177 KVYQYLQK 184 (295)
Q Consensus 177 ~a~~ll~~ 184 (295)
.+.+++.+
T Consensus 159 ~l~~~~~~ 166 (339)
T 1ug3_A 159 KVGTLWRE 166 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555554
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=66.76 E-value=28 Score=23.84 Aligned_cols=81 Identities=12% Similarity=-0.070 Sum_probs=52.8
Q ss_pred CCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC
Q 048764 56 LSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV 134 (295)
Q Consensus 56 pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~ 134 (295)
.|...+..+-. ++..++.. ..++|..+|++.++.. +-+......+-..+.+.|++++|+..++.+. ...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~------~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l-~~~-- 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQA------MTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLL-DSN-- 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTC------CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TCC--
T ss_pred CCHHHHHHHHHHHHHhcCCC------CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC--
Confidence 45555555555 33333311 1578999999988743 2346667777788899999999999999998 543
Q ss_pred CCcccHHHHHHH
Q 048764 135 PRLRTYDPALFC 146 (295)
Q Consensus 135 P~~~ty~~ll~~ 146 (295)
|+......+...
T Consensus 74 p~~~~~~~i~~~ 85 (93)
T 3bee_A 74 DPNLDRVTIIES 85 (93)
T ss_dssp CTTCCHHHHHHH
T ss_pred CCCccHHHHHHH
Confidence 443334444443
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=63.39 E-value=31 Score=25.58 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=57.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 048764 31 QSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP--NEALVTSVA 108 (295)
Q Consensus 31 ~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p--d~~ty~~li 108 (295)
..-.....+..+..-|......|.+-....|+--..+.. +.. ..+..++..++++....+- | .....=.|-
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~-----~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LA 81 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRY-----NDDIRKGIVLLEELLPKGS-KEEQRDYVFYLA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSS-----HHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCC-----HHHHHHHHHHHHHHHhcCC-cchHHHHHHHHH
Confidence 333334445566666776665554333344443333222 221 2246779999999887642 3 223333455
Q ss_pred HHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 109 RLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 109 ~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
-||.+.|++++|.++++.+. . +.|+-
T Consensus 82 vg~yklg~Y~~A~~~~~~lL-~--~eP~n 107 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRGLL-Q--TEPQN 107 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-H--HCTTC
T ss_pred HHHHHhhhHHHHHHHHHHHH-H--hCCCC
Confidence 68889999999999999887 3 35653
No 229
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=60.26 E-value=85 Score=27.22 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKSK--DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~g--~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|+.--..+.+.+ ++++++.+++.+.+.. +-|-+.|+---.+....+. ..+++++.++.+.+..+ -|..
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~-------~~~eel~~~~~~I~~~p-~N~S 180 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAV-------APAEELAFTDSLITRNF-SNYS 180 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHCS-CCHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCc-------CHHHHHHHHHHHHHHCC-CCHH
Confidence 6666555566666 4889999999998764 4455666655554444431 15788899998887653 5778
Q ss_pred HHHHHHHHHHcC--------------CCHHHHHHHHHHhhhhcCCCCCccc-HH
Q 048764 103 LVTSVARLAASK--------------KDSDYAFELIKRMNNEFNVVPRLRT-YD 141 (295)
Q Consensus 103 ty~~li~~~~~~--------------g~~~~A~~l~~~M~~~~gi~P~~~t-y~ 141 (295)
.|+-.-..+.+. +.++++++.+.... .. .|+-.+ |+
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai-~~--~P~d~SaW~ 231 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF-FT--DPNDQSAWF 231 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHH-HH--STTCHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHH-Hh--CCCCHHHHH
Confidence 888766655543 45778888888877 43 355444 44
No 230
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=58.66 E-value=47 Score=23.77 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
-++|..|-+-+...+. .+++--+=+..+...|++++|..+.+.+. .||...|.+|-.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce 79 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE 79 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH
Confidence 7889999888877654 33333333445667999999999988876 899999877654
No 231
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=58.17 E-value=9.8 Score=30.28 Aligned_cols=110 Identities=18% Similarity=0.117 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH---HHH
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE---ALV 104 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~---~ty 104 (295)
+.|...++.|+++....++..-...-..+|..-++.|..++..+. .+ +++.+.+.|..++. .-+
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~---------~~----~v~~Ll~~g~~~~~~~~~g~ 74 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH---------TE----IVEFLLQLGVPVNDKDDAGW 74 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC---------HH----HHHHHHHTTCCSCCCCTTSC
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc---------HH----HHHHHHHhCCCCCCcCCCCC
Confidence 347778888888888877765332222344455556666777666 43 33444455654432 223
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccH--HHHHHHHHhcCCHHHh
Q 048764 105 TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTY--DPALFCFCENLEAQKA 156 (295)
Q Consensus 105 ~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty--~~ll~~~~~~g~~~~A 156 (295)
|.| ...+..|+.+ +++.+. ..|..++.... .+.|...+..|+.+-.
T Consensus 75 t~L-~~A~~~~~~~----~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~ 122 (231)
T 3aji_A 75 SPL-HIAASAGXDE----IVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIA 122 (231)
T ss_dssp CHH-HHHHHHTCHH----HHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred CHH-HHHHHcCHHH----HHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 343 3344556654 444444 45555543321 1334444555665543
No 232
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=57.24 E-value=7.8 Score=24.71 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=19.2
Q ss_pred cCCHHHHHHHHHHHHhcC-CCCCHH
Q 048764 36 SKDLATAISLYESALSLN-FRLSLH 59 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g-~~pd~~ 59 (295)
.=|++.|+..|.+++..| |+|+.+
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 458999999999998665 777654
No 233
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=57.08 E-value=46 Score=23.82 Aligned_cols=57 Identities=11% Similarity=-0.025 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALF 145 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~ 145 (295)
-++|..|-+-+...+. .+++--+=+..+...|++++|..+.+.+. .||...|.+|-.
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce 78 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE 78 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH
Confidence 7889999888877654 33333333445667999999999887776 899999777654
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=56.67 E-value=99 Score=30.25 Aligned_cols=121 Identities=8% Similarity=0.053 Sum_probs=73.5
Q ss_pred HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHhhhh-----cC
Q 048764 59 HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSD-YAFELIKRMNNE-----FN 132 (295)
Q Consensus 59 ~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~-~A~~l~~~M~~~-----~g 132 (295)
+...+|+.++...+. .++.|..+|+++.+....-+.....++|..+.+.++-+ +|.+++.+.... ..
T Consensus 249 ~L~~~Ll~~~~~t~~-------~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 249 YLMYSLKSFIAITPS-------LVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp HHHHHHHHHHHTCGG-------GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccccc-------HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 345566777765542 26789999999987542223333344555554544322 455555543301 12
Q ss_pred CCCCccc------H-HHHH----HHHHhcCCHHHhhc------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 133 VVPRLRT------Y-DPAL----FCFCENLEAQKAYE------------EQEITALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 133 i~P~~~t------y-~~ll----~~~~~~g~~~~A~~------------e~~y~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
+.+.... + ..|| .-|...|+.+.|+. -..|..|..+|...|+++.|+-.|..+.
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3333221 1 1233 33557899999998 2239999999999999999999999874
No 235
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=55.69 E-value=36 Score=24.38 Aligned_cols=90 Identities=10% Similarity=-0.005 Sum_probs=65.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 048764 35 KSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 35 ~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~ 114 (295)
-....++|..+-+-+...+. -..++.--+.++-.+++ +++|..+.+.+- .||...|-+|-. .+.
T Consensus 19 G~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~---------Yq~Al~l~~~~c----~pdlepw~ALce--~rl 82 (116)
T 2p58_C 19 GNHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGD---------YASALQQGNKLA----YPDLEPWLALCE--YRL 82 (116)
T ss_dssp TTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTC---------HHHHHHHHTTSC----CGGGHHHHHHHH--HHH
T ss_pred cchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchh---------HHHHHHhcCCCC----CchHHHHHHHHH--Hhc
Confidence 34567899988888887775 44444444445666777 999999887664 699999988866 467
Q ss_pred CCHHHHHHHHHHhhhhcCCCCCcccHHH
Q 048764 115 KDSDYAFELIKRMNNEFNVVPRLRTYDP 142 (295)
Q Consensus 115 g~~~~A~~l~~~M~~~~gi~P~~~ty~~ 142 (295)
|..+++..-+..|. .+| .|....|..
T Consensus 83 Gl~s~le~rL~~la-~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 83 GLGSALESRLNRLA-RSQ-DPRIQTFVN 108 (116)
T ss_dssp TCHHHHHHHHHHHT-TCC-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-hCC-CHHHHHHHH
Confidence 88888888888887 777 666665543
No 236
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.37 E-value=29 Score=28.13 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=22.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----hHHHHHHHHHcCC
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLH----HFNALLYLCSNSA 72 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~----ty~~ll~~~~~~~ 72 (295)
++.|...++.|+++....+ .+.|..++.. -++.|..++..+.
T Consensus 6 ~~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~~~g~ 51 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAVQMSR 51 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred chHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHHHcCC
Confidence 4556667778887655444 4455444322 2344444666555
No 237
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=54.29 E-value=1e+02 Score=26.27 Aligned_cols=171 Identities=9% Similarity=0.117 Sum_probs=100.6
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHH----HcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 25 NFLISLQSCTKSK--DLATAISLYESALSLNFRLSLHHFNALLYLC----SNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 25 t~~~li~~~~~~g--~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~----~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
.|+.-=......+ ++++++.+++.+.... +-+...|+.--.+. ...+. .+.+++++.+++.+.+.. +
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~-----~~~~~~EL~~~~~~l~~~-p 141 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN-----DFDPYREFDILEAMLSSD-P 141 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT-----CCCTHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc-----cCCHHHHHHHHHHHHHhC-C
Confidence 4555444455556 8888888888877643 22233333322222 22210 012789999999998754 4
Q ss_pred CCHHHHHHHHHHHHcCCCHH--HHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCC------HHHhhc------------
Q 048764 99 PNEALVTSVARLAASKKDSD--YAFELIKRMNNEFNVVPRLRTYDPALFCFCENLE------AQKAYE------------ 158 (295)
Q Consensus 99 pd~~ty~~li~~~~~~g~~~--~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~------~~~A~~------------ 158 (295)
-|-.+|+.---.+.+.|.++ ++++.++.|. ... .-|-..|+---..+.+.|. ++++++
T Consensus 142 kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i-~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n 219 (306)
T 3dra_A 142 KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVI-DTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN 219 (306)
T ss_dssp TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHhcccChHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC
Confidence 68899998888888888888 9999999999 554 2344445544444445454 555554
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcc--cCCChhHHHHHHHHH
Q 048764 159 EQEITALLKVSAGTGRV-EKVYQYLQKLRSTV--RCVNEETGKIIEDWF 204 (295)
Q Consensus 159 e~~y~~ll~~~~~~g~~-~~a~~ll~~m~~~~--~~p~~~t~~~l~~~~ 204 (295)
...|+-+-..+.+.|+. +.+.++..++...+ -..+...+..+.+.+
T Consensus 220 ~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 220 PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 22355555556666653 33555666654432 122344455555555
No 238
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=54.13 E-value=15 Score=27.49 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNFRL---SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
-.+.|...++.|+++....+++. .+..+ +..-++.|..++..+. .+ +++.+.+.|..++..
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~---------~~----~v~~Ll~~g~~~~~~ 71 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNR---------VS----VVEYLLQHGADVHAK 71 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTC---------HH----HHHHHHHTTCCTTCC
T ss_pred hhHHHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcCh---------HH----HHHHHHhcCCCCCcc
Confidence 34556667778888777666543 22222 2222345555666665 43 444455566655433
Q ss_pred HH--HHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 103 LV--TSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 103 ty--~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
.. .+.+...+..|+.+ +++.+. ..|..++..
T Consensus 72 ~~~g~t~L~~A~~~~~~~----~v~~Ll-~~g~~~~~~ 104 (165)
T 3twr_A 72 DKGGLVPLHNACSYGHYE----VAELLV-KHGAVVNVA 104 (165)
T ss_dssp CTTSCCHHHHHHHTTCHH----HHHHHH-HTTCCTTCC
T ss_pred CCCCCCHHHHHHHcCcHH----HHHHHH-hCCCCCCCc
Confidence 22 12344445667765 444444 556566544
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.94 E-value=1.6e+02 Score=30.03 Aligned_cols=89 Identities=10% Similarity=-0.001 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYL 182 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll 182 (295)
.|+.+++++..-|++++|...+-.|. ....+ .....-||..+|..|.++. |+. +-=.|..+++.+++
T Consensus 940 l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~~~r--~~cLr~LV~~lce~~~~~~---------L~~-lpf~gl~~~Vd~IL 1006 (1139)
T 4fhn_B 940 ITHETLKTACAAGKFDAAHVALMVLS-TTPLK--KSCLLDFVNQLTKQGKINQ---------LLN-YSMPTLRQDVDNLL 1006 (1139)
T ss_dssp HHHHHHHHHHHHCCSGGGGHHHHHHH-HSSSC--HHHHHHHHHHHHHHCCHHH---------HHH-HTTTSCHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHhCC-CHHHH--HHHHHHHHHHHHhCCChhh---------hhC-CCCccHHHHHHHHH
Confidence 57778888888888888888777776 44433 3356667777777777654 221 22245556666666
Q ss_pred HHHHHcc--cCCChhHHHHHHHHH
Q 048764 183 QKLRSTV--RCVNEETGKIIEDWF 204 (295)
Q Consensus 183 ~~m~~~~--~~p~~~t~~~l~~~~ 204 (295)
....+.. ....+.-+.+|-.|.
T Consensus 1007 ~~kAr~~~~~~~~p~Yy~iLYs~r 1030 (1139)
T 4fhn_B 1007 ERKAFQMINVESQPCWYNILFSWR 1030 (1139)
T ss_dssp HHHHHHHHHHCCSTHHHHHHHHHH
T ss_pred HHHHHhCCccccCCCHHHHhHhhh
Confidence 5544322 122233456655555
No 240
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=52.63 E-value=41 Score=23.12 Aligned_cols=78 Identities=9% Similarity=-0.017 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC-cccHHHHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHH
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR-LRTYDPALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKV 178 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~-~~ty~~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a 178 (295)
+..-+-.|-..+...|+++.|...|+.......-.++ .... ...|..|-.++.+.|++++|
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~------------------~~i~~~L~~~~~~~g~~~~A 65 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDK------------------VSVLDYLSYAVYQQGDLDKA 65 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCH------------------HHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccH------------------HHHHHHHHHHHHHccCHHHH
Confidence 3444556777788899999999999887622110110 0110 11156666777888888888
Q ss_pred HHHHHHHHHcccCCChhHH
Q 048764 179 YQYLQKLRSTVRCVNEETG 197 (295)
Q Consensus 179 ~~ll~~m~~~~~~p~~~t~ 197 (295)
..++++... ..|+....
T Consensus 66 ~~~~~~al~--l~P~~~~~ 82 (104)
T 2v5f_A 66 LLLTKKLLE--LDPEHQRA 82 (104)
T ss_dssp HHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHh--cCCCCHHH
Confidence 888888765 35655433
No 241
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=52.61 E-value=1.5e+02 Score=27.64 Aligned_cols=101 Identities=12% Similarity=0.097 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-CH
Q 048764 39 LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK-DS 117 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g-~~ 117 (295)
+++++..++.+.+.. +-+-.+|+.---+....+.. .+++++..++.+.+... -|-.+|+.---.+.+.| .+
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~------~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~ 160 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAP 160 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC------CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc------cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCCh
Confidence 899999999998654 33445555544444444310 17999999999998654 58899999888888888 89
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 118 DYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
+++++.++++. ... .-|...|+-.-..+.+
T Consensus 161 ~~el~~~~~~I-~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 161 AEELAFTDSLI-TRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHHHTTT-TTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHC-CCCccHHHHHHHHHHh
Confidence 99999999998 544 2344556655555554
No 242
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=52.19 E-value=37 Score=26.16 Aligned_cols=110 Identities=5% Similarity=-0.104 Sum_probs=68.4
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHhhhhcCCCCCc-ccHHHHHHH
Q 048764 78 KDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKD----------SDYAFELIKRMNNEFNVVPRL-RTYDPALFC 146 (295)
Q Consensus 78 ~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~----------~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~ 146 (295)
+-+.+++|.+.|+.-.+.. +-+...|+.+=.++...++ +++|+..|++.. .. .|+. ..|..+=.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL-~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL-LI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH-HH--CTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH-Hh--CcCcHHHHHHHHHH
Confidence 4456899999999887743 2467777777777777655 458888888877 43 4653 455555555
Q ss_pred HHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 147 FCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 147 ~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
|...|.+ .|.+ -...|++++|...|++-.+ +.|+...+.......
T Consensus 90 y~~lg~l-----~P~~------~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 90 YTSFAFL-----TPDE------TEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHH-----CCCH------HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhccc-----Ccch------hhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 5444321 0000 0012678888888888766 467766665443333
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=52.18 E-value=77 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV 134 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~ 134 (295)
.+.-.+++.++.. +.+|+....-.+-.+|.+-|+..+|.+++.+.- +.|++
T Consensus 107 kDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC-~kG~k 157 (172)
T 1wy6_A 107 RDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC-KKGEK 157 (172)
T ss_dssp HHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCH
T ss_pred HhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH-HhhhH
Confidence 5566666666543 445677777777888888888888888888877 77753
No 244
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=51.15 E-value=35 Score=24.41 Aligned_cols=89 Identities=8% Similarity=-0.045 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKK 115 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g 115 (295)
....++|..+-+-+...+. -..++.--+.++-.+++ +++|..+.+.+- .||...|-+|-. .+.|
T Consensus 19 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~---------Yq~Al~l~~~~c----~pdlepw~ALce--~rlG 82 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGR---------YQEALAFAHGNP----WPALEPWFALCE--WHLG 82 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTC---------HHHHHGGGTTCC----CGGGHHHHHHHH--HHTT
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchh---------HHHHHHhcCCCC----CchHHHHHHHHH--Hhcc
Confidence 4567889888888887775 44444444445666777 999998876654 699999988865 5788
Q ss_pred CHHHHHHHHHHhhhhcCCCCCcccHHH
Q 048764 116 DSDYAFELIKRMNNEFNVVPRLRTYDP 142 (295)
Q Consensus 116 ~~~~A~~l~~~M~~~~gi~P~~~ty~~ 142 (295)
..+++..-+..|. .+| .|....|..
T Consensus 83 l~s~le~rL~~la-~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 83 LGAALDRRLAGLG-GSS-DPALADFAA 107 (115)
T ss_dssp CHHHHHHHHHHHH-TCS-SHHHHHHHH
T ss_pred cHHHHHHHHHHHH-hCC-CHHHHHHHH
Confidence 8888888888888 777 676665543
No 245
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=49.40 E-value=48 Score=24.47 Aligned_cols=93 Identities=16% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccchhHHHHHHHhcCCccccCCCccccceE
Q 048764 164 ALLKVSAGTG-RVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV 242 (295)
Q Consensus 164 ~ll~~~~~~g-~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~~~~v~~~~~~~g~~~~~~~w~~~~~w~ 242 (295)
.+|+.+...+ ..-.|.++++.+++.+-..+..|.--..+.|.. .|.-..-..+.|.+.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e---------------------~Glv~~~~~~~~~~~ 80 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA---------------------AGLVVRHNFDGGHAV 80 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH---------------------HTSEEEECSSSSSCE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH---------------------CCcEEEEEeCCCceE
Q ss_pred EeeeeeCCC--CCcCcCCCeeeEeeCChHHHHHHHHHHHH
Q 048764 243 VKRGSVDES--GKCCSCGNQLACVDIDDAETERFAQSVAA 280 (295)
Q Consensus 243 ~~~~~v~~~--g~C~~c~~~l~~~~l~~~e~~~~~~~i~~ 280 (295)
.....-... ..|..|| ..+|++...-+.+...++.
T Consensus 81 Y~~~~~~~H~HliC~~Cg---~v~~~~~~~~~~~~~~~~~ 117 (136)
T 1mzb_A 81 FELADSGHHDHMVCVDTG---EVIEFMDAEIEKRQKEIVR 117 (136)
T ss_dssp EEESSSCCCEEEEETTTC---CEEEECCHHHHHHHHHHHH
T ss_pred EEeCCCCcceEEEECCCC---CEEEeccccHHHHHHHHhh
No 246
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=48.11 E-value=1.4e+02 Score=26.07 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhc-C-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH
Q 048764 25 NFLISLQSCTKS-K-DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA 102 (295)
Q Consensus 25 t~~~li~~~~~~-g-~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ 102 (295)
.|+.--..+.+. + ++++++.+++.+.+.. +-|-..|+---.+....+.........+.++++.++.+.+... -|..
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~S 202 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNS 202 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHH
Confidence 444443333333 4 5566666666665432 2233344332221111110000001124589999999988654 6889
Q ss_pred HHHHHHHHHHcCCC-------HHHHHHHHHHhhhhcCCCCCc-ccHHHHHHHHHhcCCH--------------------H
Q 048764 103 LVTSVARLAASKKD-------SDYAFELIKRMNNEFNVVPRL-RTYDPALFCFCENLEA--------------------Q 154 (295)
Q Consensus 103 ty~~li~~~~~~g~-------~~~A~~l~~~M~~~~gi~P~~-~ty~~ll~~~~~~g~~--------------------~ 154 (295)
.|+-.-..+.+.+. ++++++.+++.. .. .|+- ..|+-+-..+.+.|.. .
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI-~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSI-HL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIE 279 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH-HH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHH-Hh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccch
Confidence 99998888888776 688999998887 44 3544 4455544444444432 1
Q ss_pred Hhhc-------H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 048764 155 KAYE-------E-----------QEITALLKVSAGTGRVEKVYQYLQKLRST 188 (295)
Q Consensus 155 ~A~~-------e-----------~~y~~ll~~~~~~g~~~~a~~ll~~m~~~ 188 (295)
.... . .-..-|.+.|...|+.++|.++++.+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1111 1 11577888899999999999999998764
No 247
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=47.71 E-value=57 Score=24.57 Aligned_cols=41 Identities=10% Similarity=0.075 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHH-HHHHHH
Q 048764 163 TALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETG-KIIEDW 203 (295)
Q Consensus 163 ~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~-~~l~~~ 203 (295)
..+|+.+...+..-.|.++++.+++.+-.++..|. ..|..+
T Consensus 30 ~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 71 (150)
T 2xig_A 30 EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFL 71 (150)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 34566666665666788888888877666666654 444433
No 248
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.00 E-value=64 Score=24.30 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccchhHHHHHHHhcCCccccCCCccccceE
Q 048764 164 ALLKVSAGTG-RVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWV 242 (295)
Q Consensus 164 ~ll~~~~~~g-~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~~~~v~~~~~~~g~~~~~~~w~~~~~w~ 242 (295)
.+|+.+...+ ..-.|.+++..++..+-..+..|.--..+.|.. .|.-..-..+.|.+.
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e---------------------~Glv~~~~~~~~~~~ 79 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDD---------------------AGIVTRHHFEGGKSV 79 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH---------------------TTSEEEEECGGGCEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---------------------CCcEEEEEeCCCceE
Q ss_pred EeeeeeCCC--CCcCcCCCeeeEeeCChHHHHHHHHHHHH
Q 048764 243 VKRGSVDES--GKCCSCGNQLACVDIDDAETERFAQSVAA 280 (295)
Q Consensus 243 ~~~~~v~~~--g~C~~c~~~l~~~~l~~~e~~~~~~~i~~ 280 (295)
.....-... ..|..||. .+|++...-+.+...++.
T Consensus 80 Y~~~~~~~H~HliC~~Cg~---v~~~~~~~~~~~~~~~~~ 116 (150)
T 2w57_A 80 FELSTQHHHDHLVCLDCGE---VIEFSDDVIEQRQKEIAA 116 (150)
T ss_dssp EEECCSSCCEEEEETTTCC---EEEECCHHHHHHHHHHHH
T ss_pred EEecCCCceeEEEECCCCC---EEEecccCHHHHHHHHHH
No 249
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=44.79 E-value=1e+02 Score=23.55 Aligned_cols=130 Identities=12% Similarity=0.149 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhcHHH
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYEEQE 161 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~e~~ 161 (295)
+++..++..+..++ .+..-||-+|--..-+-+-+-.+++++..-.-+.+.|-. -.-.++.+|.+.|...+-
T Consensus 23 v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~-NlKrVi~C~~~~n~~se~----- 93 (172)
T 1wy6_A 23 IDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNTLNEH----- 93 (172)
T ss_dssp HHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTCCCHH-----
T ss_pred HHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhh-cHHHHHHHHHHhcchHHH-----
Confidence 88999999988773 466778888877777777788888888775234443321 124577888887765442
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccchhHHHHHH
Q 048764 162 ITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAV 223 (295)
Q Consensus 162 y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~~~~v~~~~ 223 (295)
...-|+.+...|.-|+-.+++..+.. ..+|+++..--|...| ...|..+-.-+.++++.
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay--~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANAL--RRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHH--HHhcchhhHHHHHHHHH
Confidence 45668888889999998888888533 3467777777777777 33554433334444443
No 250
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=44.74 E-value=1.4e+02 Score=26.17 Aligned_cols=81 Identities=4% Similarity=-0.020 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLS----LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd----~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
.-.++|.-|...+|+++|..-+.++.. |+ .+.+..+..+.-+... ..+.+-.++..+...|+-+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~-------~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDE-------DKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHH-------HHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChH-------HHHHHHHHHHHHHHCCCCCH
Confidence 678899999999999999999999853 33 2333333335544431 35668888899888887666
Q ss_pred HHHHHHHHHHHHcCCC
Q 048764 101 EALVTSVARLAASKKD 116 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~ 116 (295)
......+.+.+....|
T Consensus 83 ~~~~~Gf~~lle~l~D 98 (364)
T 3l6a_A 83 DNFMQAFLNVLDQCPK 98 (364)
T ss_dssp HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHhhChH
Confidence 6666666665555443
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=44.03 E-value=72 Score=26.99 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=51.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNN--VIPNEALVTS 106 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g--~~pd~~ty~~ 106 (295)
+....+.|++++|+.....-.+.. +-|...=..|+. +|-.|+ +++|.+-++...+.. ..|-..+|-.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~---------w~RA~~QL~~~a~l~p~~~~~a~~yr~ 73 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGD---------FERADEQLMQSIKLFPEYLPGASQLRH 73 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTC---------HHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 445678999999999988777663 667777777788 888888 999999888876622 2334445555
Q ss_pred HHHH
Q 048764 107 VARL 110 (295)
Q Consensus 107 li~~ 110 (295)
+|++
T Consensus 74 lI~a 77 (273)
T 1zbp_A 74 LVKA 77 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 252
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=43.83 E-value=66 Score=24.40 Aligned_cols=54 Identities=7% Similarity=0.012 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
+..++..+++++...+-.-.....=-|--|+.+.|++++|+++.+.+. + +.|+-
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL-~--~eP~n 110 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF-E--HERNN 110 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-H--TCCCC
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH-h--cCCCc
Confidence 477888888888774321123333345558888888888888888877 3 35654
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=43.75 E-value=87 Score=22.41 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=53.4
Q ss_pred HhHHHHH-HHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 23 ETNFLIS-LQSCTKSK-DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 23 ~~t~~~l-i~~~~~~g-~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
+.-|++- ..-|-+.. |.=+..+-++.+....+.|+.....+.|++|.+-.+ +.-|.++|+-.+..- .+.
T Consensus 8 ~eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND--------~alAVR~lE~iK~K~-~~~ 78 (109)
T 1v54_E 8 DEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLND--------FASAVRILEVVKDKA-GPH 78 (109)
T ss_dssp HHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHT-TTC
T ss_pred HHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHh-cCc
Confidence 3334433 33344444 566677777888888899999999999999998775 899999999886632 222
Q ss_pred HHHHHHHHH
Q 048764 101 EALVTSVAR 109 (295)
Q Consensus 101 ~~ty~~li~ 109 (295)
..+|..++.
T Consensus 79 ~~iY~~~lq 87 (109)
T 1v54_E 79 KEIYPYVIQ 87 (109)
T ss_dssp TTHHHHHHH
T ss_pred hhhHHHHHH
Confidence 345665553
No 254
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=42.71 E-value=24 Score=27.78 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=26.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCC
Q 048764 29 SLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSA 72 (295)
Q Consensus 29 li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~ 72 (295)
.|...++.|+.+....+++.-.......|..-++.|..++..+.
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 48 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 48 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCC
Confidence 46667778887777666654332222345555555655666665
No 255
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=41.36 E-value=1.6e+02 Score=24.71 Aligned_cols=140 Identities=10% Similarity=0.040 Sum_probs=81.2
Q ss_pred HHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHH---HHH
Q 048764 46 YESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSD---YAF 121 (295)
Q Consensus 46 f~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~---~A~ 121 (295)
|+.|.+.+.....+.-+.++- +..+.++ .+.---+.+..++..|.. +.|-...+..++.+. ++.++. +.+
T Consensus 115 ~~~l~~~~y~~~~~ea~~~lP~LveKlGd---~k~~vR~~~r~il~~l~~--v~~~~~v~~~l~~g~-ksKN~R~R~e~l 188 (266)
T 2of3_A 115 VELIRDTETPMSQEEVSAFVPYLLLKTGE---AKDNMRTSVRDIVNVLSD--VVGPLKMTPMLLDAL-KSKNARQRSECL 188 (266)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHGGGC---SSHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHGG-GCSCHHHHHHHH
T ss_pred HHHHHhccccchHHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHH-ccCCHHHHHHHH
Confidence 445566677777666666666 3444332 121124456677766654 346667888888866 655653 445
Q ss_pred HHHHHhhhhcCCCCCcccHH---HHHHHHHhcCCHHHhhcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHH
Q 048764 122 ELIKRMNNEFNVVPRLRTYD---PALFCFCENLEAQKAYEEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGK 198 (295)
Q Consensus 122 ~l~~~M~~~~gi~P~~~ty~---~ll~~~~~~g~~~~A~~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~ 198 (295)
..+..|.+.+|+.|.. +. ..|. ..-+|-+...++...++++.+|...|+- +++.+ | ..++....
T Consensus 189 ~~l~~li~~~G~~~~~--~l~~~~~ia--~ll~D~d~~VR~aAl~~lve~y~~~Gd~-----v~k~l---g-~L~~~~~~ 255 (266)
T 2of3_A 189 LVIEYYITNAGISPLK--SLSVEKTVA--PFVGDKDVNVRNAAINVLVACFKFEGDQ-----MWKAA---G-RMADKDKS 255 (266)
T ss_dssp HHHHHHHHHHCSGGGG--GGCHHHHHG--GGGGCSSHHHHHHHHHHHHHHHHHHTTH-----HHHHH---C-CCCHHHHH
T ss_pred HHHHHHHHhcCCCccc--cccchHHHH--HHHcCCCHHHHHHHHHHHHHHHHHhhHH-----HHHHH---h-cCCHHHHH
Confidence 5666666578987643 22 1121 2233444444466689999999999873 44443 2 24555556
Q ss_pred HHHHHH
Q 048764 199 IIEDWF 204 (295)
Q Consensus 199 ~l~~~~ 204 (295)
.|.+-|
T Consensus 256 ~l~er~ 261 (266)
T 2of3_A 256 LVEERI 261 (266)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=41.04 E-value=53 Score=24.60 Aligned_cols=55 Identities=5% Similarity=0.012 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+..++..++++..+.+-.-....+=-|--|+.+.|+++.|.++.+.+. .+.|+-.
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL---~~eP~N~ 112 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF---EHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH---TTCTTCH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH---hhCCCCH
Confidence 477889999988875521134445556668889999999999999877 3457644
No 257
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=40.52 E-value=45 Score=25.11 Aligned_cols=91 Identities=12% Similarity=0.131 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH--HHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV--TSV 107 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty--~~l 107 (295)
|...++.|+++....+++.-...--.+|..-++.|..++..+. . ++++.+.+.|..++.... .+.
T Consensus 9 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~---------~----~~v~~Ll~~g~~~~~~~~~g~t~ 75 (179)
T 3f6q_A 9 IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR---------S----AVVEMLIMRGARINVMNRGDDTP 75 (179)
T ss_dssp HHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTC---------H----HHHHHHHHTTCCTTCCCTTCCCH
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCc---------H----HHHHHHHHcCCCCCCcCCCCCCH
Confidence 4456677888777666653221112334445555666777666 4 344445556665543221 123
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 108 ARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+...+..|+.+ +++.+. +.|..++..
T Consensus 76 L~~A~~~~~~~----~v~~Ll-~~g~~~~~~ 101 (179)
T 3f6q_A 76 LHLAASHGHRD----IVQKLL-QYKADINAV 101 (179)
T ss_dssp HHHHHHTTCHH----HHHHHH-HTTCCTTCC
T ss_pred HHHHHHcCCHH----HHHHHH-HcCCCCCcc
Confidence 44445566654 444445 556666544
No 258
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=40.32 E-value=36 Score=25.40 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=44.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH---HHHHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE---ALVTS 106 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~---~ty~~ 106 (295)
|...++.|+++....+++.-...--..|..-++.|..++..+. .+-+..++ +.|..++. .-.|
T Consensus 6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll----~~g~~~~~~~~~g~t- 71 (172)
T 3v30_A 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGE---------IETVRFLL----EWGADPHILAKERES- 71 (172)
T ss_dssp HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTC---------HHHHHHHH----HHTCCTTCCCTTCCC-
T ss_pred HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCC---------HHHHHHHH----HcCCCchhhcccCCC-
Confidence 4556777887776665543211011234444555655776666 44333333 44544332 2223
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 107 VARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 107 li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
.+...+..|+.+- ++.+. ..|..++..
T Consensus 72 ~L~~A~~~~~~~~----v~~Ll-~~g~~~~~~ 98 (172)
T 3v30_A 72 ALSLASTGGYTDI----VGLLL-ERDVDINIY 98 (172)
T ss_dssp HHHHHHHTTCHHH----HHHHH-TTTCCTTCC
T ss_pred HHHHHHHCCCHHH----HHHHH-HcCCCCCCC
Confidence 3344456666553 44444 455555543
No 259
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=39.72 E-value=1e+02 Score=23.44 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcC-CCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNS-ATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~-~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
..+.+|.-|...+|.++|..-+.++...... ....+..+..+.-+. .. ..+.+..++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~-------~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGES-------AFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSH-------HHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChH-------HHHHHHHHHHHHHHCCCcCHHHH
Confidence 7788999999999999999999998632111 123333334455543 31 25668889999988777544433
No 260
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.62 E-value=68 Score=25.13 Aligned_cols=147 Identities=10% Similarity=-0.068 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCC----CCCC
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRL---SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNN----VIPN 100 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g----~~pd 100 (295)
+.|...++.|+.+....+++. .|..+ |..-++.|..++..+. .+-+..+++.-..-. -..|
T Consensus 5 t~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~---------~~~v~~Ll~~~~~~~~~~~~~~~ 72 (232)
T 2rfa_A 5 SPLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDN---------LEAAMVLMEAAPELVFEPMTSEL 72 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTC---------HHHHHHHHHHCGGGGGCCCCSTT
T ss_pred CHHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCC---------HHHHHHHHHcCchhccccccccC
Confidence 346667778887666555432 25443 3344555555777666 555555554321100 0112
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc---------------HHHHHHHHHhcCCHHHhhc-------
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT---------------YDPALFCFCENLEAQKAYE------- 158 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t---------------y~~ll~~~~~~g~~~~A~~------- 158 (295)
..-+|.| ...+..|+.+-+. .+. +.|..++... -.+.|...+..|+.+-...
T Consensus 73 ~~g~t~L-~~A~~~~~~~~v~----~Ll-~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 146 (232)
T 2rfa_A 73 YEGQTAL-HIAVINQNVNLVR----ALL-ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD 146 (232)
T ss_dssp TTTCCHH-HHHHHTTCHHHHH----HHH-HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CCCcCHH-HHHHHcCCHHHHH----HHH-hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 2223333 4445567765444 444 4455554431 2233444455666554433
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCC
Q 048764 159 ----EQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCV 192 (295)
Q Consensus 159 ----e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p 192 (295)
...-.+.|...+..|+.+-+..+++.+.+.|..+
T Consensus 147 ~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 0112344555667788877777777777766544
No 261
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=39.56 E-value=61 Score=24.06 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHHhccccCCcccchhHHHHHHHhcCCccccCCCccccceEE
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWFSGQKVNGVSCDLGLVKNAVLKNGGGWHGLGWIGQGKWVV 243 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~~~~~~g~~~~~~~~v~~~~~~~g~~~~~~~w~~~~~w~~ 243 (295)
.+|+.+...+..-.|.++++.++..+-.++..|.--..+.|.. .|.-..--.+.|....
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e---------------------~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLAD---------------------AGEVDVLRTAEGESVY 76 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHH---------------------TTSSEEEECTTSCEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---------------------CCCEEEEEcCCCceEE
Q ss_pred eeee---eCCCCCcCcCCCeeeEeeCChHHHHHHHHHHHH
Q 048764 244 KRGS---VDESGKCCSCGNQLACVDIDDAETERFAQSVAA 280 (295)
Q Consensus 244 ~~~~---v~~~g~C~~c~~~l~~~~l~~~e~~~~~~~i~~ 280 (295)
.... -.....|..|| ..+|+++..-+.+...++.
T Consensus 77 ~~~~~~~~H~HliC~~Cg---~v~~~~~~~~~~~~~~~~~ 113 (139)
T 3mwm_A 77 RRCSTGDHHHHLVCRACG---KAVEVEGPAVEKWAEAIAA 113 (139)
T ss_dssp ECCSCSSCCEEEEETTTC---CEEEECCHHHHHHHHHHHH
T ss_pred EECCCCCCccEEEECCCC---CEeecccccHHHHHHHHHH
No 262
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=39.50 E-value=1e+02 Score=22.53 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
..+.+|.-|...||.++|.+-++++...... ....+..+..+.-+... ...+.+..++..+...|+-+.....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~------~~~e~~~~LL~~L~~~~~is~~q~~ 81 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGE------SAFKMILDLLKSLWKSSTITIDQMK 81 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSS------HHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCCh------HHHHHHHHHHHHHHHCCCcCHHHHH
Confidence 6788999999999999999999998632111 12333333335554421 0256788999999888875554443
Q ss_pred HH
Q 048764 105 TS 106 (295)
Q Consensus 105 ~~ 106 (295)
..
T Consensus 82 ~G 83 (129)
T 2nsz_A 82 RG 83 (129)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 263
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.37 E-value=53 Score=25.03 Aligned_cols=151 Identities=11% Similarity=-0.008 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH--H
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV--T 105 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty--~ 105 (295)
+.|...+..|+.+....++..-...--..|..-++.|..++..+. .++++.+.+.|..|+.... .
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-------------~~~v~~Ll~~g~~~~~~~~~g~ 73 (201)
T 3hra_A 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-------------IEIAKALIDRGADINLQNSISD 73 (201)
T ss_dssp THHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-------------HHHHHHHHHTTCCTTCCCTTSC
T ss_pred cHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-------------HHHHHHHHHcCCCCCCCCCCCC
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc-------------HHHHHHHHHHHHhc
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE-------------EQEITALLKVSAGT 172 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~-------------e~~y~~ll~~~~~~ 172 (295)
+.+...+..|+.+-+..+++.-. ..+......-.+.|...+..|+.+-... ....+.|..+....
T Consensus 74 t~l~~A~~~~~~~~~~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 151 (201)
T 3hra_A 74 SPYLYAGAQGRTEILAYMLKHAT--PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLR 151 (201)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSC--CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSS
T ss_pred CHHHHHHHcCCHHHHHHHHhccC--cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhc
Q ss_pred CCHHHHHHHHHHHHHcccCCC
Q 048764 173 GRVEKVYQYLQKLRSTVRCVN 193 (295)
Q Consensus 173 g~~~~a~~ll~~m~~~~~~p~ 193 (295)
.....-.++++.+.+.|..|+
T Consensus 152 ~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 152 EGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp CCSHHHHHHHHHHHHTTCCTT
T ss_pred cchhhHHHHHHHHHHCCCCCC
No 264
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=38.33 E-value=1.1e+02 Score=22.17 Aligned_cols=41 Identities=10% Similarity=-0.031 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 164 ALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 164 ~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
.+|+.+...+..-.|.++++.+++.+-..+..|.--..+.|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L 55 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSM 55 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHH
Confidence 46666766666678899999998887677776643333444
No 265
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=37.98 E-value=32 Score=23.41 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcCCC
Q 048764 82 LRHGFRVFDQMLS-NNVIPNEALVTSVARLAASKKD 116 (295)
Q Consensus 82 ~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~g~ 116 (295)
.++|...|.+|+. .+|.|+ .||.-.|...+..-+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPR 50 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCc
Confidence 6788888888876 677666 778877776666443
No 266
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=37.72 E-value=81 Score=22.85 Aligned_cols=92 Identities=11% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH---H
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA---L 103 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~---t 103 (295)
++.|...++.|+.+....+++.- ..+..|..-.+.|..++..+. .+ +++.+.+.|..++.. -
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~g~t~L~~A~~~~~---------~~----~v~~Ll~~g~~~~~~~~~g 67 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANG--APFTTDWLGTSPLHLAAQYGH---------FS----TTEVLLRAGVSRDARTKVD 67 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT--CCCCCCTTCCCHHHHHHHHTC---------HH----HHHHHHTTTCCTTCCCTTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCHHHHHHHcCC---------HH----HHHHHHHcCCCCCCCCCCC
Confidence 45666778888888776665531 112334444555555766666 43 344444566554422 2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCccc
Q 048764 104 VTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRT 139 (295)
Q Consensus 104 y~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~t 139 (295)
+|.|. ..+..|+.+ +++.+. +.|..|+...
T Consensus 68 ~t~L~-~A~~~~~~~----~v~~Ll-~~g~~~~~~~ 97 (153)
T 1awc_B 68 RTPLH-MAASEGHAN----IVEVLL-KHGADVNAKD 97 (153)
T ss_dssp CCHHH-HHHHHTCHH----HHHHHH-TTTCCTTCCC
T ss_pred CCHHH-HHHHcChHH----HHHHHH-HcCCCCCCCC
Confidence 33333 334556654 445555 5666665543
No 267
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=37.00 E-value=2e+02 Score=24.75 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC-H
Q 048764 39 LATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKD-S 117 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~-~ 117 (295)
+++++.+++.+.... +-+..+|+.---+....+.. .+++++.+++.|.+.. +-|-.+|+.---.+...|. +
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~------~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~ 161 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP------NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP 161 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc------cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCH
Confidence 678999999887653 33555555544433333311 1889999999998855 3688999988888888888 5
Q ss_pred HHHHHHHHHhhhhcCCCCCcccHHHHHHHHHh
Q 048764 118 DYAFELIKRMNNEFNVVPRLRTYDPALFCFCE 149 (295)
Q Consensus 118 ~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~ 149 (295)
+++++.++.+. ... .-|...|+-.-..+.+
T Consensus 162 ~eel~~~~~~I-~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 162 AEELAFTDSLI-TRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHHHHH-HHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHC-CCCHHHHHHHHHHHHH
Confidence 99999999998 655 2344445554444443
No 268
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=36.95 E-value=14 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.3
Q ss_pred CCcCcCCCeeeEeeCChHHHHHHHHHH
Q 048764 252 GKCCSCGNQLACVDIDDAETERFAQSV 278 (295)
Q Consensus 252 g~C~~c~~~l~~~~l~~~e~~~~~~~i 278 (295)
.+|+.||..+..=.|..+|.+...+.+
T Consensus 52 FkCP~CgEEFyG~~Lp~~EaeKVFELL 78 (95)
T 2k5c_A 52 FKCPVCGEEFYGKTLPRREAEKVFELL 78 (95)
T ss_dssp EECTTTCCEEETTSSCTTTHHHHHHHH
T ss_pred hcCCCccHHHhcccCChHHHHHHHHHH
Confidence 589999999988888888877766554
No 269
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=36.76 E-value=1.2e+02 Score=22.22 Aligned_cols=97 Identities=14% Similarity=0.080 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHhhhhcCCCC-CcccHHHHHHHHHhcCCHHHhh
Q 048764 82 LRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDY---AFELIKRMNNEFNVVP-RLRTYDPALFCFCENLEAQKAY 157 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~---A~~l~~~M~~~~gi~P-~~~ty~~ll~~~~~~g~~~~A~ 157 (295)
+..+.+-|.+....|. |+..|--.+.-++.++.+... ++.++.+.. ..+ .| +.+-|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~-~~~-~p~~~Rd~l---------------- 77 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELL-PKG-SKEEQRDYV---------------- 77 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT-TTS-CHHHHHHHH----------------
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcC-CcchHHHHH----------------
Confidence 6667777776666555 666666667777888877666 899999887 443 23 122111
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcccCCChhHHHHHHHHH
Q 048764 158 EEQEITALLKVSAGTGRVEKVYQYLQKLRSTVRCVNEETGKIIEDWF 204 (295)
Q Consensus 158 ~e~~y~~ll~~~~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~~~~ 204 (295)
| .|--++.+.|++++|..+++.+.+ ..|+..-...|...+
T Consensus 78 ----Y-~LAvg~yklg~Y~~A~~~~~~lL~--~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 78 ----F-YLAVGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELERLI 117 (126)
T ss_dssp ----H-HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred ----H-HHHHHHHHhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 1 122346788999999999998877 467665555554433
No 270
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.59 E-value=79 Score=24.38 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=44.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-CC-HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCH---HHHHH
Q 048764 32 SCTKSKDLATAISLYESALSLNFR-LS-LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNE---ALVTS 106 (295)
Q Consensus 32 ~~~~~g~~~~A~~lf~~m~~~g~~-pd-~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~---~ty~~ 106 (295)
..++.|+++....++.. ++. .+ ..-++.|..++..+. .+.-.++.+-+.+.|..||. .=+|.
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~---------~~~~~~iv~~Ll~~Gadvn~~d~~g~Tp 78 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNN---------DEARYKISMFLINKGADIKSRTKEGTTL 78 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSC---------HHHHHHHHHHHHHTTCCSSCCCTTCCCT
T ss_pred HHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCC---------cchHHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 34556666665444432 221 12 223334433555554 44455555556666654433 22444
Q ss_pred HHHHHHc-CCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 107 VARLAAS-KKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 107 li~~~~~-~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
|.-++.. ..+.....++.+.+. ..|..+|..
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll-~~Gadin~~ 110 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFL-EKGADITAL 110 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH-HTTCCSSSC
T ss_pred HHHHHHcCCcchhhHHHHHHHHH-HCCCCCCcc
Confidence 4443333 345555555666666 566555543
No 271
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=32.16 E-value=71 Score=24.97 Aligned_cols=47 Identities=11% Similarity=0.095 Sum_probs=32.1
Q ss_pred CCCCHHhHHHHHHHHHcCCCC-----------CCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 54 FRLSLHHFNALLYLCSNSATD-----------PSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 54 ~~pd~~ty~~ll~~~~~~~~~-----------~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
+.||+.+|+.|.......+.. .+...|+..+|..+-..|++.|+.|+
T Consensus 4 ~ip~~~s~~~lf~~i~n~~~~~~~a~~pdI~f~YpddGCyARAHlm~~~l~~~Gi~p~ 61 (185)
T 2zk9_X 4 VIPDVATLNSLFNQIKNESCGTSTASSPCITFRYPVDGCYARAHKMRQILMNNGYDCE 61 (185)
T ss_dssp EESCHHHHHHHHHHHHTTBTTCTTCCSSCBCTTCTTSCHHHHHHHHHHHHHHTTBCCE
T ss_pred ccCchHHHHHHHHHHhhccccccccCCCCcccccCcccHHHHHHHHHHHHHHcCCChh
Confidence 568999999888866655421 13456677777777777777777654
No 272
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.89 E-value=2.1e+02 Score=23.35 Aligned_cols=90 Identities=9% Similarity=-0.031 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc--CCCC----CHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 048764 27 LISLQSCTKSKDLATAISLYESALSL--NFRL----SLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP 99 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~--g~~p----d~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p 99 (295)
---|+.|....++++|+.+.++.++. ++++ +.......|. .+.... -.-+..+.+++.. .+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~---------~~L~~~L~~~l~~---~~ 89 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRR---------EAISSKLSQSILS---SN 89 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHH---------HHHHHHHHHHHHT---CS
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHH---------HHHHHHHHHHHHh---cC
Confidence 34588999999999999999977632 3332 1122222233 222111 3335555556633 45
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 100 NEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 100 d~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
+...-...+..+.+-|+.++|.++|=+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 66777778888999999999999887655
No 273
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.84 E-value=1.2e+02 Score=20.99 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=32.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHH
Q 048764 87 RVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQ 154 (295)
Q Consensus 87 ~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~ 154 (295)
.|++.+.+.|| .+..-...+-. .......+.|.++++.+. ..| ...|..+++++...|+..
T Consensus 25 ~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~-~rG----~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLE-TRG----SQALPLFISCLEDTGQDM 85 (97)
T ss_dssp TTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHT-TSC----TTHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHH-HcC----hHHHHHHHHHHHHcCcHH
Confidence 35666666665 23222222222 101246677777777777 444 246677777766656554
No 274
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=31.35 E-value=1.5e+02 Score=21.56 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=43.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH--HHH
Q 048764 30 LQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV--TSV 107 (295)
Q Consensus 30 i~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty--~~l 107 (295)
|...++.|+++....+++.-.. --.+|..-++.|..++..+. .+ +++.+.+.|..|+.... .+.
T Consensus 7 L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~---------~~----~v~~Ll~~g~~~~~~~~~g~t~ 72 (167)
T 3v31_A 7 VHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQ---------IA----VVEFLLQNGADPQLLGKGRESA 72 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTC---------HH----HHHHHHHTTCCTTCCCTTCCCH
T ss_pred HHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCC---------HH----HHHHHHHcCCCCCCcCCCCCcH
Confidence 5566777887766665543110 01234444555555666665 43 33444455655442211 123
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 108 ARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 108 i~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+...+..|+.+-+ +.+. ..|..++..
T Consensus 73 L~~A~~~~~~~~v----~~Ll-~~g~~~~~~ 98 (167)
T 3v31_A 73 LSLACSKGYTDIV----KMLL-DCGVDVNEY 98 (167)
T ss_dssp HHHHHHHTCHHHH----HHHH-HHTCCTTCC
T ss_pred HHHHHHcCCHHHH----HHHH-HCCCCCCcC
Confidence 3444555665544 3344 445455443
No 275
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=31.03 E-value=68 Score=20.22 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 82 LRHGFRVFDQMLSNNVIPN--EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd--~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
.++....+.+| .|+ ..+...++. +..|+++.|+..+-+|. ..+..|+.
T Consensus 9 ~ee~l~~L~em-----FP~ld~~~I~~vL~--a~~gdvd~aI~~LL~m~-~~~~~~~~ 58 (59)
T 1wgl_A 9 SEEDLKAIQDM-----FPNMDQEVIRSVLE--AQRGNKDAAINSLLQMG-EEPSGPSS 58 (59)
T ss_dssp CHHHHHHHHHH-----CSSSCHHHHHHHHT--TTTTCHHHHHHHHHHSS-CCCCSCCC
T ss_pred CHHHHHHHHHH-----CCCCCHHHHHHHHH--HcCCCHHHHHHHHHcCc-CCCCCCCC
Confidence 45667777777 254 333333333 56889999999999999 77777763
No 276
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=30.74 E-value=1.7e+02 Score=22.07 Aligned_cols=79 Identities=11% Similarity=0.161 Sum_probs=54.6
Q ss_pred cHhHHHHHHHH-HHhcC-CHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC
Q 048764 22 PETNFLISLQS-CTKSK-DLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP 99 (295)
Q Consensus 22 p~~t~~~li~~-~~~~g-~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p 99 (295)
++.-|++--.. |-+.. |.=+..+-++.+....+.|+......-|++|.+-.+ +.-|.++|+-.+.+ +.+
T Consensus 50 t~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvND--------falAVR~lE~vK~K-~~~ 120 (152)
T 2y69_E 50 TDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLND--------FASAVRILEVVKDK-AGP 120 (152)
T ss_dssp CHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH-TTT
T ss_pred cHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHh-cCC
Confidence 33344443333 33444 455666777777788899999999999999999885 99999999998763 223
Q ss_pred CHHHHHHHHH
Q 048764 100 NEALVTSVAR 109 (295)
Q Consensus 100 d~~ty~~li~ 109 (295)
...+|..+|.
T Consensus 121 ~~~iY~y~lq 130 (152)
T 2y69_E 121 HKEIYPYVIQ 130 (152)
T ss_dssp CTTHHHHHHH
T ss_pred chhhHHHHHH
Confidence 3445665553
No 277
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=30.72 E-value=2.7e+02 Score=24.23 Aligned_cols=168 Identities=10% Similarity=0.049 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHH
Q 048764 26 FLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVT 105 (295)
Q Consensus 26 ~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~ 105 (295)
++.+-....+....++|+.+++++.... +-+...|+.-=......+. .+++++.+++.+..... -+..+|+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~-------~l~eEL~~~~~~L~~nP-Kny~aW~ 127 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNK-------SLEDELRLMNEFAVQNL-KSYQVWH 127 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHTTC-CCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 3333444455566688999999998653 2233444443333333331 18999999999988553 5778888
Q ss_pred HHHHHHHcC-C-CHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHH--------Hhhc------------HHHHH
Q 048764 106 SVARLAASK-K-DSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQ--------KAYE------------EQEIT 163 (295)
Q Consensus 106 ~li~~~~~~-g-~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~--------~A~~------------e~~y~ 163 (295)
.--..+.+. + ++++++++++.+. ... .-|...|+----.+.+.|..+ ++++ ...|+
T Consensus 128 hR~wlL~~l~~~~~~~EL~~~~k~L-~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~ 205 (349)
T 3q7a_A 128 HRLLLLDRISPQDPVSEIEYIHGSL-LPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWG 205 (349)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHT-SSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHH-HhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 877666665 6 8899999999998 433 123333433222222222222 3333 11144
Q ss_pred HHHHHHHhcCC-------HHHHHHHHHHHHHcccCC-ChhHHHHHHHHHhc
Q 048764 164 ALLKVSAGTGR-------VEKVYQYLQKLRSTVRCV-NEETGKIIEDWFSG 206 (295)
Q Consensus 164 ~ll~~~~~~g~-------~~~a~~ll~~m~~~~~~p-~~~t~~~l~~~~~~ 206 (295)
..--.+.+.+. ++++++++++.... .| +.+.|..+...+..
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 44444444454 67888888887763 45 45677776666643
No 278
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.67 E-value=45 Score=28.53 Aligned_cols=95 Identities=12% Similarity=0.124 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCC
Q 048764 24 TNFLISLQSCTKSKDLATAISLYESALSLNFRLSL---HHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPN 100 (295)
Q Consensus 24 ~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~---~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd 100 (295)
..=.+.|...+..|+++-+..++ +.|..++. .-++.|..++..+. .+-+ +.+.+.|..++
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~L~~A~~~g~---------~~~v----~~Ll~~g~~~~ 80 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTALHLACKFGC---------VDTA----KYLASVGEVHS 80 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCHHHHHHHHCC---------HHHH----HHHHHHCCCCC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcHHHHHHHcCC---------HHHH----HHHHHCCCCcc
Confidence 34455666777788877665554 45655543 33455555666665 4333 33334444444
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCC
Q 048764 101 EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPR 136 (295)
Q Consensus 101 ~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~ 136 (295)
...-.+.+...+..|+.+-+..+++.-. ..|..|+
T Consensus 81 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~ 115 (364)
T 3ljn_A 81 LWHGQKPIHLAVMANKTDLVVALVEGAK-ERGQMPE 115 (364)
T ss_dssp CBTTBCHHHHHHHTTCHHHHHHHHHHHH-HHTCCHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHhcc-ccCCCHH
Confidence 3222234444556677777777776644 4444443
No 279
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=29.80 E-value=1.2e+02 Score=22.29 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=48.2
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCC
Q 048764 22 PETNFLISLQSCTKSKDLATAISLYESALSLNFRLS---LHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVI 98 (295)
Q Consensus 22 p~~t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~ 98 (295)
|.....+.+...++.|+.+.+..++ +.|..++ ..-++.|..++..+. .+ +++.+.+.|..
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~---------~~----~v~~Ll~~g~~ 72 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILM----ANGADVNAEDASGWTPLHLAAFNGH---------LE----IVEVLLKNGAD 72 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTC---------HH----HHHHHHHTTCC
T ss_pred CCCcccchHHHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHcCC---------HH----HHHHHHHcCCC
Confidence 3334445566667788887765554 4465443 344555555777666 44 33444455654
Q ss_pred CCHH---HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 99 PNEA---LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 99 pd~~---ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
++.. -+|. +...+..|+.+- ++.+. +.|..++..
T Consensus 73 ~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll-~~g~~~~~~ 109 (169)
T 2y1l_E 73 VNAVDHAGMTP-LRLAALFGHLEI----VEVLL-KNGADVNAN 109 (169)
T ss_dssp TTCCCTTSCCH-HHHHHHTTCHHH----HHHHH-HTTCCTTCC
T ss_pred CCccCCCCCCH-HHHHHHcCCHHH----HHHHH-HcCCCCCCC
Confidence 4322 2333 444556677654 44444 455555443
No 280
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.41 E-value=44 Score=26.37 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHhHHHHHHHHHcCC
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLS---LHHFNALLYLCSNSA 72 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd---~~ty~~ll~~~~~~~ 72 (295)
+.|...++.|+.+-+ +.+.+.|..++ ....+.|..++..+.
T Consensus 46 t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 89 (237)
T 3b7b_A 46 TPLMEAAENNHLEAV----KYLIKAGALVDPKDAEGSTCLHLAAKKGH 89 (237)
T ss_dssp CHHHHHHHTTCHHHH----HHHHTTTCCCCCCCTTSCCHHHHHHHTTC
T ss_pred CHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 345556667776544 44445665443 333445555666655
No 281
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=29.34 E-value=63 Score=21.36 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=20.3
Q ss_pred CCCcCcCCCeeeEeeCChHHHHHHHHHHHHHH
Q 048764 251 SGKCCSCGNQLACVDIDDAETERFAQSVAALA 282 (295)
Q Consensus 251 ~g~C~~c~~~l~~~~l~~~e~~~~~~~i~~~~ 282 (295)
...|+.||... +++++-+++...+..+-
T Consensus 36 ~~~C~~CGE~~----~~~e~~~~~~~~~~~f~ 63 (78)
T 3ga8_A 36 GLYCVHCEESI----MNKEESDAFMAQVKAFR 63 (78)
T ss_dssp EEEETTTCCEE----CCHHHHHHHHHHHHHHH
T ss_pred eEECCCCCCEE----ECHHHHHHHHHHHHHHH
Confidence 47899999998 66777766666655543
No 282
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=29.28 E-value=2.3e+02 Score=23.88 Aligned_cols=105 Identities=11% Similarity=0.106 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcC--CCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFN--VVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~g--i~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.+++|+....+-++.. +-|...=..|+..+|-.|+++.|..-++... ... ..|-..+|-.+|.+=...-++-.+..
T Consensus 12 ~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a-~l~p~~~~~a~~yr~lI~aE~~R~~vfaG~~ 89 (273)
T 1zbp_A 12 QLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI-KLFPEYLPGASQLRHLVKAAQARKDFAQGAA 89 (273)
T ss_dssp CHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCchhhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3889888888766643 4577777889999999999999988777665 322 22334455555554332222222211
Q ss_pred --------HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 048764 159 --------EQEITALLKVSA--GTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 --------e~~y~~ll~~~~--~~g~~~~a~~ll~~m~~ 187 (295)
.+-...||.+.. ..|+.++|..+-.+..+
T Consensus 90 ~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 90 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 222456677655 45999999988887754
No 283
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=28.88 E-value=1.3e+02 Score=21.27 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 048764 40 ATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSV 107 (295)
Q Consensus 40 ~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~l 107 (295)
..|.++-++...-|+.|+..+..-++.+|..-+.++ -.+-+-+--|. ....|..|+..+.+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~lda----~e~VeeWmAFs-ts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQNE----EGMVGELIAFC-TSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTCCH----HHHHHHHHHHH-HHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCH----HHHHHHHHHHH-HhcCCCCCCHHHHHHH
Confidence 346677888888899999999999999887766310 01222222232 2346888887776654
No 284
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=28.83 E-value=2.7e+02 Score=23.73 Aligned_cols=106 Identities=13% Similarity=0.041 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA- 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~- 102 (295)
.|..+|-++.....-.+|..+++.|+..| .|. ..|+. +|.+... ++....+.|+++-...+.-+..
T Consensus 75 ~f~~ll~~l~~~~~~~DA~~L~~A~kg~G--tde---~~lieIL~~Rs~~-------ql~~I~~aY~~~y~~~Le~di~~ 142 (320)
T 1yii_A 75 KFETLMVSLMRPARIFDAHALKHAIKGAG--TNE---KVLTEILASRTPA-------EVQNIKQVYMQEYEANLEDKITG 142 (320)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSSSS--CCH---HHHHHHHHHSCHH-------HHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hHHHHHHHHccChHHHHHHHHHHHhccCC--Cch---HHHhHHHhcCCHH-------HHHHHHHHHHHhhCcCHHHHHHh
Confidence 57777778877766788888888885444 454 45566 6666552 4777778887765544321111
Q ss_pred ----HHHHHHHHHHcCCC-----H------HHHHHHHHHhhhhcCCCCCcccHHHHH
Q 048764 103 ----LVTSVARLAASKKD-----S------DYAFELIKRMNNEFNVVPRLRTYDPAL 144 (295)
Q Consensus 103 ----ty~~li~~~~~~g~-----~------~~A~~l~~~M~~~~gi~P~~~ty~~ll 144 (295)
-|--++-+..+... + ..|..+++.|. . +.-.|..++..+|
T Consensus 143 e~sG~~~~~l~~l~~~~r~~~~~vd~~~a~~dA~~L~~A~~-~-~~Gtde~~li~Il 197 (320)
T 1yii_A 143 ETSGHFQRLLVVLLQANRDPDGRVDEALVEKDAQVLFRAGE-L-KWGTDEETFITIL 197 (320)
T ss_dssp HCCHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHHHHHH-T-TTCSSHHHHHHHH
T ss_pred hcCCcHHHHHHHHHhhccCccccCCchHHHHHHHHHHHHHh-c-CCCCCHHHHHHHH
Confidence 23344444444322 1 23778888887 3 3345665555544
No 285
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=28.35 E-value=64 Score=26.95 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH-
Q 048764 27 LISLQSCTKSKDLATAISLYESALSLNFRL---SLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA- 102 (295)
Q Consensus 27 ~~li~~~~~~g~~~~A~~lf~~m~~~g~~p---d~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~- 102 (295)
.+.|...++.|+.+....++.. .+..+ |..-.+.|..++..+. .+ +++.+.+.|..++..
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~---------~~----~v~~Ll~~g~~~~~~~ 88 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNR---------VR----IVQLLLQHGADVHAKD 88 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTC---------HH----HHHHHHHTTCCTTCCC
T ss_pred chhHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCC---------HH----HHHHHHHcCCCCCccC
Confidence 3456667788888887777653 33333 3333445555666665 43 333444556544322
Q ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc---cHHHHHHHHHhcCCHHHh
Q 048764 103 --LVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLR---TYDPALFCFCENLEAQKA 156 (295)
Q Consensus 103 --ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~---ty~~ll~~~~~~g~~~~A 156 (295)
-+|. +...+..|+.+- ++.+. +.|..++.. -+++ |...+..|+.+-.
T Consensus 89 ~~g~t~-L~~A~~~g~~~i----v~~Ll-~~g~~~~~~~~~g~t~-L~~A~~~~~~~~v 140 (351)
T 3utm_A 89 KGGLVP-LHNACSYGHYEV----TELLL-KHGACVNAMDLWQFTP-LHEAASKNRVEVC 140 (351)
T ss_dssp TTCCCH-HHHHHHTTCHHH----HHHHH-HTTCCTTCCCTTCCCH-HHHHHHTTCHHHH
T ss_pred CCCCcH-HHHHHHCCCHHH----HHHHH-HCCCCCCCCCCCCCCH-HHHHHHcCCHHHH
Confidence 2233 344455677554 44444 445555443 2233 3334455655543
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.31 E-value=1.1e+02 Score=26.28 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS 51 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~ 51 (295)
...++|.-|...|+.++|..-++++..
T Consensus 5 ~~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 5 TLTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 457889999999999999999988753
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.17 E-value=1.9e+02 Score=21.78 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
..+.+|.=|...||.++|.+.++++.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 45678888999999999999999998
No 288
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=27.99 E-value=52 Score=26.44 Aligned_cols=43 Identities=16% Similarity=-0.104 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HhHHHHHHHHHc
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSL-------HHFNALLYLCSN 70 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~-------~ty~~ll~~~~~ 70 (295)
+.|...++.|+.+....+++.+.+.|..++. .-.+.|..++..
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~ 53 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLN 53 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHc
Confidence 4567778889999888888888888865543 445566667766
No 289
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.87 E-value=2.8e+02 Score=23.52 Aligned_cols=48 Identities=6% Similarity=0.027 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCC
Q 048764 86 FRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVV 134 (295)
Q Consensus 86 ~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~ 134 (295)
-+++..+.+.|+.|...++.-++..++..=.++.++.+++.+. ..|..
T Consensus 208 p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l-~~g~~ 255 (331)
T 3qye_A 208 RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIF-LQGTE 255 (331)
T ss_dssp HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHH-HHCTT
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHH-HCCcH
Confidence 3677777788888888888888888888777888888888887 66643
No 290
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=27.54 E-value=51 Score=21.66 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHcC
Q 048764 82 LRHGFRVFDQMLS-NNVIPNEALVTSVARLAASK 114 (295)
Q Consensus 82 ~~~a~~lf~~M~~-~g~~pd~~ty~~li~~~~~~ 114 (295)
.++|...|.+|+. .+|.|+ .+|.-.+.-+...
T Consensus 14 ~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~D 46 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN-ASWEQAMKMIIND 46 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccC
Confidence 6778888888866 666665 6777777766654
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.23 E-value=2.4e+02 Score=22.57 Aligned_cols=53 Identities=15% Similarity=0.111 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 82 LRHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 82 ~~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
..++..+|..|..+||--. ..-|-.-...+-..|++.+|.++|+.=. ..+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI-~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA-ENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcc
Confidence 6688899999988887544 5567777888888899999999888776 666566
No 292
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.18 E-value=3.4e+02 Score=24.27 Aligned_cols=155 Identities=10% Similarity=0.037 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCHHhHHHHHH-H---HHcCCCCCCcchHHHHHHHHHHHHHHh--CC-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESAL-SLNFRLSLHHFNALLY-L---CSNSATDPSLKDSALRHGFRVFDQMLS--NN- 96 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~-~~g~~pd~~ty~~ll~-~---~~~~~~~~~~~~~~~~~a~~lf~~M~~--~g- 96 (295)
....++..|.+.++++...+.+..+. .+|..+... +.+++ + ....... ..+.-..+.+.... .|
T Consensus 58 ~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai--~~~V~~~~~~l~~~~~~------d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 58 VLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSI--QYMIQKVMEYLKSSKSL------DLNTRISVIETIRVVTENK 129 (445)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHH--HHHHHHHHHHHHHHCTT------HHHHHHHHHHCCSSSSSCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHHhccc
Confidence 67778899999999988877776554 455444332 34444 1 1111100 01111111111110 11
Q ss_pred CCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHhhh-hcCCCCC---cccHHHHHHHHHhcCCHHHhhc-----------
Q 048764 97 VIP---NEALVTSVARLAASKKDSDYAFELIKRMNN-EFNVVPR---LRTYDPALFCFCENLEAQKAYE----------- 158 (295)
Q Consensus 97 ~~p---d~~ty~~li~~~~~~g~~~~A~~l~~~M~~-~~gi~P~---~~ty~~ll~~~~~~g~~~~A~~----------- 158 (295)
+.. .......|.+.|-..|++.+|..++.++.. .+|..+. +..|.-.+..|...++...|..
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 112234455666667777777777776642 1222211 2345555556666666665554
Q ss_pred ---HH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 048764 159 ---EQ-----EITALLKVSAGTGRVEKVYQYLQKLRS 187 (295)
Q Consensus 159 ---e~-----~y~~ll~~~~~~g~~~~a~~ll~~m~~ 187 (295)
.+ -|..++..+...+++.+|...|.+.-+
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 00 145555555566666666655555433
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.10 E-value=2.1e+02 Score=21.94 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=44.6
Q ss_pred HHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHcCCCHHHHHHHHHHhh
Q 048764 61 FNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIP--NEALVTSVAR-L-----AASKKDSDYAFELIKRMN 128 (295)
Q Consensus 61 y~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~p--d~~ty~~li~-~-----~~~~g~~~~A~~l~~~M~ 128 (295)
|..-+.++..+. +-+|-++|++.....-.| +...|-.||. . +.+.|+...|..++.+-.
T Consensus 36 ~~~~i~lFn~g~---------yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 36 VVHGVRLYNSGE---------FHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHTTC---------HHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC---------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444445555655 999999999998876666 6778888888 2 233799999999999876
No 294
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=26.86 E-value=3e+02 Score=23.55 Aligned_cols=115 Identities=18% Similarity=0.102 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
+|.++..-|.+.+++++|++++..-- +.+...+.. .-..+-|.-+.+-..+.++++|..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~-----~sa~DLa~llvev~~~~~~~~~~~~~ 95 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQG-----GSGTDLIFYLLEVYDLAEVKVDDISV 95 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCH-----HHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCc-----chHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888888888888888887754321 111111110 00133344455555667777777777
Q ss_pred HHHHHHHHcCCCHH-HHHHHHHHhhh---hcCC--CCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 105 TSVARLAASKKDSD-YAFELIKRMNN---EFNV--VPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 105 ~~li~~~~~~g~~~-~A~~l~~~M~~---~~gi--~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
.-++..+.....-+ .=..+++.+.. +.|- .-|..-...+-..|.+.|++.+|..
T Consensus 96 ~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~ 155 (312)
T 2wpv_A 96 ARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAER 155 (312)
T ss_dssp HHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 77776665532111 11344444431 1221 1233445555566667777777665
No 295
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.04 E-value=2.2e+02 Score=21.92 Aligned_cols=53 Identities=8% Similarity=0.028 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCc
Q 048764 84 HGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRL 137 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~ 137 (295)
+...+|..|..+||--. ...|-.-...+-..|++.+|.++|..=. ..+-.|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi-~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI-QQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHH
Confidence 47789999999888654 5567777778888999999999998877 66666653
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.56 E-value=2.2e+02 Score=21.60 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCC
Q 048764 83 RHGFRVFDQMLSNNVIPN-EALVTSVARLAASKKDSDYAFELIKRMNNEFNVVP 135 (295)
Q Consensus 83 ~~a~~lf~~M~~~g~~pd-~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P 135 (295)
.++..+|..|..+||--. ..-|-.-...+-..|++.+|.++|+.=. ..+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi-~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI-QNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCcc
Confidence 358899999999888544 5567888888888999999999998876 555555
No 297
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.50 E-value=1.6e+02 Score=19.81 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHHHHHH--HHHcCCCCCCcchHHHHHHHHHHHHHHhCC
Q 048764 39 LATAISLYESALSLNFRLSLHHFNALLY--LCSNSATDPSLKDSALRHGFRVFDQMLSNN 96 (295)
Q Consensus 39 ~~~A~~lf~~m~~~g~~pd~~ty~~ll~--~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g 96 (295)
.++|..+|++..+. .|+...-..++. ++..++ +++|...|+.+.+..
T Consensus 25 ~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~---------y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 25 TDEVSLLLEQALQL--EPYNEAALSLIANDHFISFR---------FQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHhhC
Confidence 79999999998874 454444444444 455555 999999999999854
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=25.34 E-value=2.1e+02 Score=25.16 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLYLCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALV 104 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty 104 (295)
..+.+|.-|...++.++|.+-+.++....+.+ .+.+..+....-+... ...+...+++..+...|+-+.....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~------~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGE------SAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSS------HHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCch------HHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 67899999999999999999999996432222 2334444444444321 0256688999999888875544444
Q ss_pred HHH
Q 048764 105 TSV 107 (295)
Q Consensus 105 ~~l 107 (295)
..+
T Consensus 292 ~Gf 294 (358)
T 3eiq_C 292 RGY 294 (358)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 299
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=24.67 E-value=1.4e+02 Score=20.50 Aligned_cols=39 Identities=5% Similarity=-0.079 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 048764 81 ALRHGFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFEL 123 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l 123 (295)
..+.|.++++.+..+|- ..|..++.++...|+...|..+
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcHHHHHHH
Confidence 38899999999998775 7899999999888887777554
No 300
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.60 E-value=1e+02 Score=24.64 Aligned_cols=33 Identities=15% Similarity=-0.030 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHh
Q 048764 28 ISLQSCTKSKDLATAISLYESALSLNFRLSLHH 60 (295)
Q Consensus 28 ~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~t 60 (295)
+.|...++.|+.+....+++.+.+.|..++...
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~ 39 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE 39 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh
Confidence 356677888999998889998888887777544
No 301
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.54 E-value=1.2e+02 Score=22.09 Aligned_cols=44 Identities=7% Similarity=-0.115 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 048764 85 GFRVFDQMLSNNVIPNEALVTSVARLAASKKDSDYAFELIKRMN 128 (295)
Q Consensus 85 a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~ 128 (295)
-.-+|+.+.+..+.|++..--.-|..+...++++.|..+.-.+.
T Consensus 45 L~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 45 LALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44567777777787776665566666677899999999998887
No 302
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=24.34 E-value=2.2e+02 Score=21.74 Aligned_cols=32 Identities=3% Similarity=0.008 Sum_probs=18.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcc
Q 048764 106 SVARLAASKKDSDYAFELIKRMNNEFNVVPRLR 138 (295)
Q Consensus 106 ~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ 138 (295)
+.+...+..|+.+.-.++.+.+. ..|..||..
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~ 71 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLI-NKGADIKSR 71 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCC
T ss_pred CHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCC
Confidence 34444455566665566666666 666666543
No 303
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.30 E-value=4.6e+02 Score=26.68 Aligned_cols=75 Identities=9% Similarity=0.040 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC-CCCcc--cHHHHHHHHHhcCCHHHhhc-----------HHHHHHHHHH
Q 048764 103 LVTSVARLAASKKDSDYAFELIKRMNNEFNV-VPRLR--TYDPALFCFCENLEAQKAYE-----------EQEITALLKV 168 (295)
Q Consensus 103 ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi-~P~~~--ty~~ll~~~~~~g~~~~A~~-----------e~~y~~ll~~ 168 (295)
=|..++..+-+.+.++.+.++-..-....+- .++.. -|..+++++...|+.++|+. ...+..||..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3788889999999999998877655412221 12222 47889999999999999966 1125566666
Q ss_pred HHhcCCHHH
Q 048764 169 SAGTGRVEK 177 (295)
Q Consensus 169 ~~~~g~~~~ 177 (295)
+|..|..++
T Consensus 981 lce~~~~~~ 989 (1139)
T 4fhn_B 981 LTKQGKINQ 989 (1139)
T ss_dssp HHHHCCHHH
T ss_pred HHhCCChhh
Confidence 666666544
No 304
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=24.04 E-value=3.5e+02 Score=23.43 Aligned_cols=150 Identities=8% Similarity=-0.023 Sum_probs=84.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH------------------------HHHhcCCCCCHHhHHHHHHHHHcCCCCCCcchH
Q 048764 25 NFLISLQSCTKSKDLATAISLYE------------------------SALSLNFRLSLHHFNALLYLCSNSATDPSLKDS 80 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~------------------------~m~~~g~~pd~~ty~~ll~~~~~~~~~~~~~~~ 80 (295)
+|.++..-|.+.+++++|++++- -..+.++++|..+..-|+.+++.-......+.-
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~ 116 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKR 116 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHH
Confidence 78888888988888888877543 234556677777777777766654421111111
Q ss_pred HHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHHHhhc
Q 048764 81 ALRHGFRVFDQMLSNN--VIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQKAYE 158 (295)
Q Consensus 81 ~~~~a~~lf~~M~~~g--~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~~A~~ 158 (295)
-+.+|.+-= .+.| -.-|...-..+-..|.+.+++.+|...| +. |-.+...+|..+|--+...+.-.
T Consensus 117 fi~~ai~WS---~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~--il---g~~~s~~~~a~mL~ew~~~~~~~---- 184 (336)
T 3lpz_A 117 FVKEMIDWS---KKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL--VL---GTKESPEVLARMEYEWYKQDESH---- 184 (336)
T ss_dssp HHHHHHHHH---HHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH--TT---SCTTHHHHHHHHHHHHHHTSCGG----
T ss_pred HHHHHHHHH---hhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH--Hh---cCCchHHHHHHHHHHHHHhcCCc----
Confidence 111121111 1112 2234445556667788888888887777 23 33455578877777776655411
Q ss_pred HHH-H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 048764 159 EQE-I-TALLKVSAGTGRVEKVYQYLQKLR 186 (295)
Q Consensus 159 e~~-y-~~ll~~~~~~g~~~~a~~ll~~m~ 186 (295)
+.+ | .-.+=-|.-.+++..|..++....
T Consensus 185 e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 185 TAPLYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111 2 222222445667777777665554
No 305
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=22.45 E-value=1.9e+02 Score=25.34 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALS 51 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~ 51 (295)
...++|.-|...++.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 778899999999999999999998753
No 306
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=22.11 E-value=3.7e+02 Score=22.92 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHH-
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEA- 102 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~- 102 (295)
.|..+|-+++...-..+|..+++.|+. .-.|. ..|+. +|.+... ++....+.|+.+-...+.-|..
T Consensus 77 ~f~~ll~~l~~~~~~~dA~~l~~A~kg--~Gtde---~~lieIL~tRs~~-------ql~~i~~~Y~~~~g~~Le~dI~~ 144 (321)
T 1n00_A 77 DFERLVLLWALDPAERDALLANEATKR--WTSSN---QVLMEIACTRSAN-------QLLHARQAYHARYKKSLEEDVAH 144 (321)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSS--SCSSC---HHHHHHHHSSCHH-------HHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hHHHHHHHHcCChhHHHHHHHHHHhhc--cCCCH---HHHHHHHhcCCHH-------HHHHHHHHHHHHhCccHHHHHHh
Confidence 577777777776666778888888854 34454 45666 6666552 4777888887765544321111
Q ss_pred ----HHHHHHHHHHcCCCH-----------HHHHHHHHHhh
Q 048764 103 ----LVTSVARLAASKKDS-----------DYAFELIKRMN 128 (295)
Q Consensus 103 ----ty~~li~~~~~~g~~-----------~~A~~l~~~M~ 128 (295)
-|--++-+..+.... ..|..+++.|.
T Consensus 145 e~sG~~~~~L~~lv~~~r~~~~~vd~~~~~~dA~~L~~A~~ 185 (321)
T 1n00_A 145 HTTGDFHKLLLPLVSSYRYEGEEVNMTLAKTEAKLLHEKIS 185 (321)
T ss_dssp HCCHHHHHHHHHHHHCCCCCSCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHhcccCCCcCCChhhhHHHHHHHHHHhh
Confidence 233444444443322 36788888888
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=21.80 E-value=98 Score=24.01 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=7.0
Q ss_pred HHHHHHhcCCHHHH
Q 048764 165 LLKVSAGTGRVEKV 178 (295)
Q Consensus 165 ll~~~~~~g~~~~a 178 (295)
.|...+..|+.+-+
T Consensus 180 ~L~~A~~~~~~~~v 193 (240)
T 3eu9_A 180 ALHWAVLAGNTTVI 193 (240)
T ss_dssp HHHHHHHHTCHHHH
T ss_pred HHHHHHHcCCHHHH
Confidence 44444555665433
No 308
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.79 E-value=2.2e+02 Score=25.67 Aligned_cols=62 Identities=15% Similarity=-0.001 Sum_probs=39.9
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCCcccHHHHHHHHHhcCCHH-HhhcHHHHHHHHHHHHhcCCHHH
Q 048764 113 SKKDSDYAFELIKRMNNEFNVVPRLRTYDPALFCFCENLEAQ-KAYEEQEITALLKVSAGTGRVEK 177 (295)
Q Consensus 113 ~~g~~~~A~~l~~~M~~~~gi~P~~~ty~~ll~~~~~~g~~~-~A~~e~~y~~ll~~~~~~g~~~~ 177 (295)
+.++++.|+.++..|. ..|..|..+.=-.++.+.-.-|..+ .|+. .-++-.+++-+.|..+-
T Consensus 267 rgsd~daAl~~la~ml-~~Gedp~~i~rrl~~~a~edig~a~p~a~~--~~~~~~~~~~~~g~pe~ 329 (447)
T 3pvs_A 267 RGSAPDAALYWYARII-TAGGDPLYVARRCLAIASEDVGNADPRAMQ--VAIAAWDCFTRVGPAEG 329 (447)
T ss_dssp HTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTGGGCTHHHH--HHHHHHHHHHHSCHHHH
T ss_pred hCCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccCCChhHHH--HHHHHHHHHHHhCCcHH
Confidence 3579999999999999 9998888777666666665555543 1111 12333455555565543
No 309
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=21.66 E-value=1.8e+02 Score=22.46 Aligned_cols=64 Identities=9% Similarity=0.122 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 048764 36 SKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEALVTSVAR 109 (295)
Q Consensus 36 ~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~ty~~li~ 109 (295)
.+|+++|..+|+.+++.+-.. ...|-..-. =.++++ +..|++++..-...+.+|....=+++=+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgn---------l~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGN---------VKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHccc---------HHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 378889999999987654333 222222222 223344 9999999999988887776554444433
No 310
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=21.32 E-value=33 Score=21.80 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHH-Hc
Q 048764 83 RHGFRVFDQMLS-NNVIPNEALVTSVARLA-AS 113 (295)
Q Consensus 83 ~~a~~lf~~M~~-~g~~pd~~ty~~li~~~-~~ 113 (295)
++|...|.+|++ .+|.|+ -||.-.|+.. ++
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~ 34 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISELGTR 34 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccC
Confidence 467777777766 555444 7777777777 44
No 311
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.12 E-value=4.5e+02 Score=23.52 Aligned_cols=115 Identities=9% Similarity=0.053 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcCC----CCCcccHHHHHHHHHh
Q 048764 82 LRHGFRVFDQMLS--------NNVIPNEALVTSVARLAASKKDSDYAFELIKRMNNEFNV----VPRLRTYDPALFCFCE 149 (295)
Q Consensus 82 ~~~a~~lf~~M~~--------~g~~pd~~ty~~li~~~~~~g~~~~A~~l~~~M~~~~gi----~P~~~ty~~ll~~~~~ 149 (295)
.++...++..... .++..+......++.. ..|+...++.+++.+. ...- ....+|-..+-.+..+
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~-~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMA-DMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHH-HHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHH-HhcccccCCCCccCHHHHHHHHhh
Confidence 4566667766654 3355677777777776 5799999999999887 4332 1235676666555544
Q ss_pred cCC-HHHhhcHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcccCCChhHHHHHH
Q 048764 150 NLE-AQKAYEEQEITALLKVS---AGTGRVEKVYQYLQKLRSTVRCVNEETGKIIE 201 (295)
Q Consensus 150 ~g~-~~~A~~e~~y~~ll~~~---~~~g~~~~a~~ll~~m~~~~~~p~~~t~~~l~ 201 (295)
... .++. .+..|. +|.++ .+..+.+.|+..+.+|.+.|..|......++.
T Consensus 244 ~~~~~dk~-gd~~yd-~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~ 297 (447)
T 3pvs_A 244 RSARFDNK-GDRFYD-LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLA 297 (447)
T ss_dssp CCCC---C-CHHHHH-HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhhccCCc-cchHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 321 1110 022232 33332 46789999999999999988877655555443
No 312
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.08 E-value=64 Score=22.85 Aligned_cols=12 Identities=50% Similarity=1.165 Sum_probs=9.7
Q ss_pred CCCcCcCCCeee
Q 048764 251 SGKCCSCGNQLA 262 (295)
Q Consensus 251 ~g~C~~c~~~l~ 262 (295)
.+.||.||..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 457999999874
No 313
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=20.24 E-value=2e+02 Score=22.00 Aligned_cols=71 Identities=6% Similarity=-0.012 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHhHHHHHH-HHHcCCCCCCcchHHHHHHHHHHHHHHhCCCCCCHHH
Q 048764 25 NFLISLQSCTKSKDLATAISLYESALSLNFRLSLHHFNALLY-LCSNSATDPSLKDSALRHGFRVFDQMLSNNVIPNEAL 103 (295)
Q Consensus 25 t~~~li~~~~~~g~~~~A~~lf~~m~~~g~~pd~~ty~~ll~-~~~~~~~~~~~~~~~~~~a~~lf~~M~~~g~~pd~~t 103 (295)
...++|.-|...+|.++|..-++++......| .....+|. ++-+.+. ..+.+-.++..+.. ++-+....
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~--~~V~~~I~~aldrk~~-------ere~~s~LL~~L~~-~~ls~~~i 81 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS--GVPVLAVSLALEGKAS-------HREMTSKLLSDLCG-TVMSTTDV 81 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG--HHHHHHHHHHHTSCHH-------HHHHHHHHHHHHBT-TTBCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHH--HHHHHHHHHHHcCCHH-------HHHHHHHHHHHHHH-CCCCHHHH
Confidence 67889999999999999999999986332211 22233334 4444331 24557788888744 55444443
Q ss_pred HH
Q 048764 104 VT 105 (295)
Q Consensus 104 y~ 105 (295)
..
T Consensus 82 ~~ 83 (165)
T 2rg8_A 82 EK 83 (165)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 314
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.10 E-value=1.9e+02 Score=18.70 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 048764 84 HGFRVFDQMLSNNVIPNEALVTSVARLAASKK 115 (295)
Q Consensus 84 ~a~~lf~~M~~~g~~pd~~ty~~li~~~~~~g 115 (295)
.+.+|++.+.+.+...+..|.--.++.+...|
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 35556666655554455555555555555444
Done!