BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048765
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
pdb|3VKH|B Chain B, X-Ray Structure Of A Functional Full-Length Dynein Motor
Domain
Length = 3367
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 23 QQVKLVKGAEQEVEKLTSHLQTIQAVLSDAEQRQVKEESVRVWLGRLKDVSYDIEDVLDE 82
++ KLV+G + KL HL +I A + + +V EE W RL V +LD
Sbjct: 187 RKCKLVRGWDDLFNKLAEHLNSISA-MKMSPYYKVFEEEANHWDDRLNKV----RSLLDV 241
Query: 83 WITARRRLQMKQNADSAQKQVSSCFPASSIGFKKI 117
WI +RR + S ++ PA S FK I
Sbjct: 242 WIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSI 276
>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
pdb|3VKG|B Chain B, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein
Motor Domain
Length = 3245
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 23 QQVKLVKGAEQEVEKLTSHLQTIQAVLSDAEQRQVKEESVRVWLGRLKDVSYDIEDVLDE 82
++ KLV+G + KL HL +I A + + +V EE W RL V +LD
Sbjct: 187 RKCKLVRGWDDLFNKLAEHLNSISA-MKMSPYYKVFEEEANHWDDRLNKV----RSLLDV 241
Query: 83 WITARRRLQMKQNADSAQKQVSSCFPASSIGFKKI 117
WI +RR + S ++ PA S FK I
Sbjct: 242 WIDVQRRWVYLEGIFSGSGDINQLLPAESTRFKSI 276
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 10 LEQLISVSAEELTQQVKLVKGAEQEVEKLTSHLQTIQAVL---SDAEQRQVKEESVRVWL 66
+ LI E LT++ KL KG ++ +E L L++ A L + + Q+ + ++W
Sbjct: 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQD-KLWA 61
Query: 67 GRLKDVSYDIEDVLDEWI 84
++++SY IEDV+D+++
Sbjct: 62 DEVRELSYVIEDVVDKFL 79
>pdb|1CWP|A Chain A, Structures Of The Native And Swollen Forms Of Cowpea
Chlorotic Mottle Virus Determined By X-Ray
Crystallography And Cryo-Electron Microscopy
pdb|1CWP|B Chain B, Structures Of The Native And Swollen Forms Of Cowpea
Chlorotic Mottle Virus Determined By X-Ray
Crystallography And Cryo-Electron Microscopy
pdb|1CWP|C Chain C, Structures Of The Native And Swollen Forms Of Cowpea
Chlorotic Mottle Virus Determined By X-Ray
Crystallography And Cryo-Electron Microscopy
Length = 190
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 49 LSDAEQRQVKEESVRVWLGRLKDVSYDIEDVLDEW-ITARRRLQMKQN-ADSAQKQVSSC 106
LS +Q+K V +WLG L VS ++ + E TA Q+ AD+++ V++
Sbjct: 78 LSSERNKQLKVGRVLLWLGLLPSVSGTVKSCVTETQTTAAASFQVALAVADNSKDVVAAM 137
Query: 107 FPASSIGFKKIILRQ 121
+P + FK I L Q
Sbjct: 138 YPEA---FKGITLEQ 149
>pdb|1ZA7|A Chain A, The Crystal Structure Of Salt Stable Cowpea Cholorotic
Mottle Virus At 2.7 Angstroms Resolution.
pdb|1ZA7|B Chain B, The Crystal Structure Of Salt Stable Cowpea Cholorotic
Mottle Virus At 2.7 Angstroms Resolution.
pdb|1ZA7|C Chain C, The Crystal Structure Of Salt Stable Cowpea Cholorotic
Mottle Virus At 2.7 Angstroms Resolution
Length = 165
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 49 LSDAEQRQVKEESVRVWLGRLKDVSYDIEDVLDEW-ITARRRLQMKQN-ADSAQKQVSSC 106
LS +Q+K V +WLG L VS ++ + E TA Q+ AD+++ V++
Sbjct: 53 LSSERNKQLKVGRVLLWLGLLPSVSGTVKSCVTETQTTAAASFQVALAVADNSKDVVAAM 112
Query: 107 FPASSIGFKKIILRQ 121
+P + FK I L Q
Sbjct: 113 YPEA---FKGITLEQ 124
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDK--ILWVCVSETFEEFRVAK--AMVEALDGH 254
++I GM G GK+ LA A ++ + WV V + + + K + LD
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 255 ES-------HLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSK 307
ES ++ E + LR + +S LL+LDDVWD W LK +
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLRKHPRS-LLILDDVWDS----W-----VLKAFDSQCQ 259
Query: 308 ILVTTR 313
IL+TTR
Sbjct: 260 ILLTTR 265
>pdb|2CH7|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 2 VDAIVSPLLEQLISVSAEELTQQVKLVKGAEQEV----EKLTSHLQTIQ 46
VD I + + E + +AEE+T VK V QE+ E++TS +QTI+
Sbjct: 249 VDEITTAMTEN--AKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIR 295
>pdb|2CH7|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of A Bacterial
Chemoreceptor From Thermotoga Maritima
Length = 309
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 2 VDAIVSPLLEQLISVSAEELTQQVKLVKGAEQEV----EKLTSHLQTIQ 46
VD I + + E + +AEE+T VK V QE+ E++TS +QTI+
Sbjct: 249 VDEITTAMTEN--AKNAEEITNSVKEVNARLQEISASTEEVTSRVQTIR 295
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 21/126 (16%)
Query: 199 ISIVGMGGIGKTTLAQLACNHEEVIRKF--DKILWVCVSETFEEFRVAK--AMVEALDGH 254
++I GM G GK+ LA A ++ + WV + + + + K + LD
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 255 ES-------HLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSK 307
ES ++ E + LR + +S LL+LDDVWD P+ LK + +
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRS-LLILDDVWD-------PWV--LKAFDNQCQ 259
Query: 308 ILVTTR 313
IL+TTR
Sbjct: 260 ILLTTR 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,108,397
Number of Sequences: 62578
Number of extensions: 295616
Number of successful extensions: 1260
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1242
Number of HSP's gapped (non-prelim): 26
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)