Query 048765
Match_columns 314
No_of_seqs 204 out of 2037
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 12:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.1E-35 4.5E-40 287.7 22.5 288 3-314 2-298 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 7.8E-25 1.7E-29 191.9 11.8 135 174-314 1-138 (287)
3 PLN03210 Resistant to P. syrin 99.7 1.4E-17 3.1E-22 170.3 14.4 136 167-314 182-333 (1153)
4 PRK00411 cdc6 cell division co 99.2 2.8E-10 6E-15 104.3 14.7 119 167-287 28-150 (394)
5 TIGR02928 orc1/cdc6 family rep 99.1 1.4E-09 2.9E-14 98.7 14.1 119 167-287 13-141 (365)
6 PF13401 AAA_22: AAA domain; P 99.1 3.7E-10 7.9E-15 86.9 8.8 117 195-313 3-124 (131)
7 PF05729 NACHT: NACHT domain 99.1 1.1E-09 2.4E-14 87.5 9.5 112 197-314 1-129 (166)
8 COG1474 CDC6 Cdc6-related prot 99.0 1.5E-08 3.2E-13 91.0 14.8 138 169-310 17-159 (366)
9 PF13191 AAA_16: AAA ATPase do 98.9 4.1E-09 9E-14 85.9 8.7 51 170-223 1-51 (185)
10 cd00009 AAA The AAA+ (ATPases 98.9 2.1E-08 4.6E-13 78.0 11.4 122 172-313 1-128 (151)
11 PTZ00202 tuzin; Provisional 98.9 9E-08 2E-12 85.9 15.4 106 164-282 257-368 (550)
12 PTZ00112 origin recognition co 98.8 7.7E-08 1.7E-12 92.8 13.8 142 168-310 754-905 (1164)
13 TIGR03015 pepcterm_ATPase puta 98.8 1.6E-07 3.4E-12 81.5 13.9 99 196-298 43-146 (269)
14 PF01637 Arch_ATPase: Archaeal 98.8 1E-08 2.3E-13 86.6 6.0 59 171-237 1-59 (234)
15 PRK04841 transcriptional regul 98.8 1E-07 2.2E-12 96.5 13.9 131 169-314 14-161 (903)
16 cd01128 rho_factor Transcripti 98.8 1.5E-08 3.2E-13 86.2 6.1 91 195-286 15-114 (249)
17 PF13173 AAA_14: AAA domain 98.8 5.6E-08 1.2E-12 74.4 8.8 96 197-314 3-98 (128)
18 COG2909 MalT ATP-dependent tra 98.6 1.3E-06 2.8E-11 83.8 14.8 134 169-314 19-169 (894)
19 PRK09376 rho transcription ter 98.6 1.8E-07 4E-12 83.3 8.0 89 196-285 169-266 (416)
20 PRK05564 DNA polymerase III su 98.5 6.9E-07 1.5E-11 79.2 10.5 124 169-314 4-132 (313)
21 PRK12402 replication factor C 98.5 9.9E-07 2.2E-11 79.1 10.2 138 169-313 15-163 (337)
22 TIGR00767 rho transcription te 98.5 3.3E-07 7.2E-12 82.0 6.8 91 195-286 167-266 (415)
23 PRK11331 5-methylcytosine-spec 98.5 8.5E-07 1.8E-11 80.7 9.3 120 169-300 175-298 (459)
24 PRK06893 DNA replication initi 98.5 4.5E-07 9.7E-12 76.7 6.9 89 197-312 40-131 (229)
25 PRK07003 DNA polymerase III su 98.4 2E-06 4.3E-11 82.6 11.5 123 169-314 16-158 (830)
26 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.1E-06 2.4E-11 74.1 8.8 106 175-313 23-131 (226)
27 COG2256 MGS1 ATPase related to 98.4 7.9E-07 1.7E-11 78.5 8.0 90 194-310 46-136 (436)
28 PRK14961 DNA polymerase III su 98.4 3.3E-06 7.2E-11 76.4 11.9 137 169-313 16-157 (363)
29 PRK08116 hypothetical protein; 98.4 1.9E-06 4.2E-11 74.4 9.9 102 197-313 115-219 (268)
30 PRK13342 recombination factor 98.4 1.7E-06 3.8E-11 79.6 9.5 109 169-310 12-124 (413)
31 KOG2227 Pre-initiation complex 98.4 2.8E-06 6.1E-11 76.4 10.1 142 167-311 148-293 (529)
32 PRK14957 DNA polymerase III su 98.4 3.5E-06 7.6E-11 79.3 11.1 121 169-312 16-156 (546)
33 PLN03025 replication factor C 98.4 4.2E-06 9E-11 74.5 11.1 123 169-312 13-136 (319)
34 PRK04195 replication factor C 98.4 3.8E-06 8.1E-11 79.0 11.2 120 169-312 14-137 (482)
35 TIGR02903 spore_lon_C ATP-depe 98.3 6.4E-06 1.4E-10 79.3 12.2 136 169-310 154-327 (615)
36 PRK14960 DNA polymerase III su 98.3 4.4E-06 9.5E-11 79.3 10.7 133 169-313 15-156 (702)
37 KOG2028 ATPase related to the 98.3 1.5E-06 3.3E-11 75.8 6.9 95 194-310 160-254 (554)
38 PHA02544 44 clamp loader, smal 98.3 5E-06 1.1E-10 73.9 10.5 118 169-313 21-139 (316)
39 PRK14963 DNA polymerase III su 98.3 7.4E-07 1.6E-11 83.5 5.1 135 169-312 14-153 (504)
40 PRK00440 rfc replication facto 98.3 9.4E-06 2E-10 72.1 12.0 122 169-312 17-139 (319)
41 PRK14949 DNA polymerase III su 98.3 5.8E-06 1.3E-10 80.9 10.8 122 169-313 16-157 (944)
42 PRK12323 DNA polymerase III su 98.3 8.4E-06 1.8E-10 77.3 11.3 122 169-313 16-162 (700)
43 PF00004 AAA: ATPase family as 98.3 6.7E-06 1.4E-10 62.9 9.0 95 199-313 1-110 (132)
44 KOG2543 Origin recognition com 98.2 9.3E-06 2E-10 71.4 9.9 112 168-287 5-127 (438)
45 PRK14958 DNA polymerase III su 98.2 1.2E-05 2.6E-10 75.6 11.4 121 169-312 16-156 (509)
46 PF05496 RuvB_N: Holliday junc 98.2 4.1E-06 8.9E-11 69.1 7.1 55 169-226 24-78 (233)
47 PRK14951 DNA polymerase III su 98.2 1.2E-05 2.6E-10 76.8 10.9 135 169-312 16-161 (618)
48 TIGR00635 ruvB Holliday juncti 98.2 3.6E-06 7.9E-11 74.4 7.1 50 169-219 4-53 (305)
49 PF05673 DUF815: Protein of un 98.2 1.6E-05 3.4E-10 66.5 10.3 121 166-313 24-148 (249)
50 PRK13341 recombination factor 98.2 4.9E-06 1.1E-10 81.1 8.3 109 169-310 28-141 (725)
51 smart00382 AAA ATPases associa 98.2 1.1E-05 2.4E-10 61.9 8.6 88 197-288 3-91 (148)
52 PRK14969 DNA polymerase III su 98.2 2E-05 4.4E-10 74.5 11.9 121 169-312 16-156 (527)
53 PF05621 TniB: Bacterial TniB 98.2 2.1E-05 4.5E-10 67.9 10.7 115 169-286 34-156 (302)
54 PRK06645 DNA polymerase III su 98.2 2.1E-05 4.5E-10 73.7 11.5 139 169-312 21-165 (507)
55 PRK14964 DNA polymerase III su 98.2 2.1E-05 4.5E-10 73.2 11.4 121 169-312 13-153 (491)
56 PRK08691 DNA polymerase III su 98.2 2E-05 4.4E-10 75.5 11.5 122 169-313 16-157 (709)
57 PF00308 Bac_DnaA: Bacterial d 98.1 3.1E-05 6.6E-10 65.0 11.2 125 170-313 10-138 (219)
58 PRK07994 DNA polymerase III su 98.1 1.7E-05 3.6E-10 76.0 10.7 133 169-313 16-157 (647)
59 PRK08727 hypothetical protein; 98.1 2E-05 4.3E-10 66.8 10.1 90 197-313 42-134 (233)
60 PRK14962 DNA polymerase III su 98.1 2.2E-05 4.8E-10 73.1 11.0 45 169-218 14-58 (472)
61 PRK14955 DNA polymerase III su 98.1 2.4E-05 5.3E-10 71.6 11.1 135 169-312 16-164 (397)
62 TIGR02397 dnaX_nterm DNA polym 98.1 3.6E-05 7.9E-10 69.5 11.9 121 169-313 14-155 (355)
63 PRK14956 DNA polymerase III su 98.1 1.2E-05 2.5E-10 74.2 8.4 136 169-312 18-158 (484)
64 PRK05896 DNA polymerase III su 98.1 3E-05 6.4E-10 73.5 10.9 132 169-312 16-156 (605)
65 PRK00080 ruvB Holliday junctio 98.1 9.9E-06 2.1E-10 72.4 7.3 50 169-219 25-74 (328)
66 PRK12377 putative replication 98.1 1.2E-05 2.6E-10 68.4 7.4 101 196-313 101-204 (248)
67 TIGR00678 holB DNA polymerase 98.1 7.6E-05 1.6E-09 61.1 11.6 41 273-313 94-134 (188)
68 PRK05642 DNA replication initi 98.1 4.1E-05 8.8E-10 64.9 10.2 91 196-313 45-138 (234)
69 PRK07940 DNA polymerase III su 98.0 4.9E-05 1.1E-09 69.2 11.2 126 169-313 5-155 (394)
70 PRK07764 DNA polymerase III su 98.0 4E-05 8.6E-10 75.8 11.2 121 169-313 15-158 (824)
71 TIGR01242 26Sp45 26S proteasom 98.0 2.4E-05 5.3E-10 70.9 9.1 52 167-218 120-178 (364)
72 PRK14952 DNA polymerase III su 98.0 5.4E-05 1.2E-09 72.1 11.6 132 169-312 13-155 (584)
73 PRK08181 transposase; Validate 98.0 2.9E-05 6.3E-10 66.9 9.0 98 197-313 107-207 (269)
74 PRK08903 DnaA regulatory inact 98.0 2.8E-05 6E-10 65.7 8.7 39 196-236 42-80 (227)
75 PRK09111 DNA polymerase III su 98.0 4E-05 8.6E-10 73.3 10.6 135 169-312 24-169 (598)
76 PRK10536 hypothetical protein; 98.0 0.0001 2.2E-09 62.5 11.5 131 169-311 55-209 (262)
77 PRK14950 DNA polymerase III su 98.0 2.6E-05 5.6E-10 75.0 8.9 133 169-312 16-157 (585)
78 PF01695 IstB_IS21: IstB-like 98.0 1E-05 2.2E-10 65.5 5.2 99 196-313 47-148 (178)
79 PRK08084 DNA replication initi 98.0 6.9E-05 1.5E-09 63.6 10.5 38 196-235 45-82 (235)
80 PRK06921 hypothetical protein; 98.0 5.6E-05 1.2E-09 65.3 10.0 98 196-313 117-223 (266)
81 TIGR03345 VI_ClpV1 type VI sec 98.0 2.8E-05 6E-10 77.6 9.2 135 169-312 566-716 (852)
82 PF04665 Pox_A32: Poxvirus A32 98.0 3.1E-05 6.8E-10 65.1 8.2 37 196-234 13-49 (241)
83 PRK07952 DNA replication prote 98.0 8.3E-05 1.8E-09 63.2 10.7 101 196-312 99-202 (244)
84 PRK14970 DNA polymerase III su 98.0 7.9E-05 1.7E-09 67.7 11.4 122 169-312 17-145 (367)
85 PRK08939 primosomal protein Dn 98.0 6.9E-05 1.5E-09 66.0 10.6 121 173-313 135-259 (306)
86 PRK14954 DNA polymerase III su 98.0 6.7E-05 1.5E-09 72.0 11.0 139 169-312 16-164 (620)
87 TIGR03346 chaperone_ClpB ATP-d 98.0 6.2E-05 1.3E-09 75.5 11.2 125 169-302 565-694 (852)
88 TIGR02639 ClpA ATP-dependent C 97.9 4.3E-05 9.3E-10 75.5 9.5 122 169-302 454-580 (731)
89 PRK14087 dnaA chromosomal repl 97.9 7.9E-05 1.7E-09 69.2 10.5 104 196-313 141-247 (450)
90 PRK14086 dnaA chromosomal repl 97.9 0.00017 3.6E-09 68.5 12.5 99 197-313 315-418 (617)
91 PRK10865 protein disaggregatio 97.9 8.7E-05 1.9E-09 74.3 11.2 125 169-302 568-697 (857)
92 PRK06526 transposase; Provisio 97.9 4.7E-05 1E-09 65.2 8.0 99 196-313 98-199 (254)
93 TIGR00362 DnaA chromosomal rep 97.9 0.00014 3E-09 67.0 11.6 100 196-313 136-240 (405)
94 PF13177 DNA_pol3_delta2: DNA 97.9 0.0002 4.4E-09 57.0 11.0 119 173-314 1-141 (162)
95 PRK03992 proteasome-activating 97.9 5.6E-05 1.2E-09 69.0 8.5 51 168-218 130-187 (389)
96 COG2607 Predicted ATPase (AAA+ 97.9 0.00017 3.7E-09 59.7 10.3 121 166-313 57-181 (287)
97 PRK06835 DNA replication prote 97.9 5.7E-05 1.2E-09 67.0 8.2 101 197-313 184-287 (329)
98 PRK09183 transposase/IS protei 97.9 9.4E-05 2E-09 63.6 9.3 99 197-313 103-204 (259)
99 PRK14971 DNA polymerase III su 97.9 0.00017 3.6E-09 69.5 11.9 120 169-312 17-158 (614)
100 PRK14953 DNA polymerase III su 97.9 0.0002 4.3E-09 67.1 12.0 121 169-312 16-156 (486)
101 PRK14088 dnaA chromosomal repl 97.8 0.0001 2.2E-09 68.4 9.7 101 196-313 130-235 (440)
102 PRK14965 DNA polymerase III su 97.8 0.00017 3.7E-09 69.1 11.4 132 169-312 16-156 (576)
103 PRK08118 topology modulation p 97.8 1E-05 2.2E-10 64.8 2.5 35 198-232 3-38 (167)
104 PRK14959 DNA polymerase III su 97.8 0.00016 3.5E-09 68.9 10.7 132 169-312 16-156 (624)
105 PRK00149 dnaA chromosomal repl 97.8 0.0003 6.5E-09 65.7 12.4 100 196-313 148-252 (450)
106 CHL00095 clpC Clp protease ATP 97.8 0.00011 2.5E-09 73.4 10.1 124 169-302 509-638 (821)
107 PF02562 PhoH: PhoH-like prote 97.8 0.00021 4.5E-09 58.8 9.8 127 173-311 4-152 (205)
108 TIGR02237 recomb_radB DNA repa 97.8 0.00014 3.1E-09 60.4 9.0 88 194-285 10-107 (209)
109 CHL00095 clpC Clp protease ATP 97.8 0.00022 4.8E-09 71.4 11.6 45 169-219 179-223 (821)
110 COG0542 clpA ATP-binding subun 97.8 7.9E-05 1.7E-09 72.2 8.1 126 169-302 491-620 (786)
111 PRK07471 DNA polymerase III su 97.8 0.00038 8.1E-09 62.9 11.9 136 169-313 19-179 (365)
112 PRK12422 chromosomal replicati 97.8 0.00016 3.5E-09 67.0 9.7 100 196-313 141-243 (445)
113 PRK09112 DNA polymerase III su 97.8 0.00012 2.6E-09 65.7 8.4 136 168-312 22-178 (351)
114 COG1484 DnaC DNA replication p 97.8 0.00014 3.1E-09 62.3 8.5 82 195-293 104-185 (254)
115 PRK09361 radB DNA repair and r 97.7 0.00025 5.3E-09 59.8 9.8 88 194-285 21-117 (225)
116 PRK08451 DNA polymerase III su 97.7 0.00043 9.3E-09 65.2 12.0 118 169-313 14-155 (535)
117 PRK04296 thymidine kinase; Pro 97.7 0.00011 2.4E-09 60.2 7.1 111 197-314 3-115 (190)
118 TIGR00763 lon ATP-dependent pr 97.7 0.0014 3E-08 65.3 16.0 50 169-218 320-369 (775)
119 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00022 4.8E-09 71.3 10.4 45 169-219 187-231 (852)
120 COG0470 HolB ATPase involved i 97.7 0.00039 8.4E-09 61.9 10.9 124 170-313 2-147 (325)
121 PRK14948 DNA polymerase III su 97.7 0.00043 9.3E-09 66.8 11.5 134 169-312 16-158 (620)
122 PRK06305 DNA polymerase III su 97.7 0.00039 8.3E-09 64.7 10.9 120 169-312 17-158 (451)
123 COG0466 Lon ATP-dependent Lon 97.7 0.00026 5.5E-09 67.3 9.6 106 168-287 322-429 (782)
124 PRK07133 DNA polymerase III su 97.7 0.00042 9.2E-09 67.2 11.3 131 169-312 18-155 (725)
125 PRK06647 DNA polymerase III su 97.7 0.00048 1E-08 65.7 11.5 132 169-312 16-156 (563)
126 TIGR02640 gas_vesic_GvpN gas v 97.7 0.00047 1E-08 59.5 10.6 95 198-300 23-130 (262)
127 TIGR02881 spore_V_K stage V sp 97.7 0.00044 9.6E-09 59.7 10.4 26 194-219 40-65 (261)
128 KOG2004 Mitochondrial ATP-depe 97.7 0.0016 3.4E-08 62.1 14.3 105 168-286 410-516 (906)
129 PRK09087 hypothetical protein; 97.6 0.00015 3.2E-09 61.1 6.9 24 196-219 44-67 (226)
130 smart00763 AAA_PrkA PrkA AAA d 97.6 5.7E-05 1.2E-09 67.1 4.5 51 170-220 52-102 (361)
131 COG0593 DnaA ATPase involved i 97.6 0.0022 4.8E-08 58.1 14.7 102 195-313 112-216 (408)
132 TIGR02639 ClpA ATP-dependent C 97.6 0.0002 4.2E-09 70.9 8.6 45 169-219 182-226 (731)
133 PRK05541 adenylylsulfate kinas 97.6 0.00034 7.4E-09 56.5 8.6 38 194-233 5-42 (176)
134 KOG1514 Origin recognition com 97.6 0.00075 1.6E-08 64.0 11.8 139 169-312 396-546 (767)
135 PF07728 AAA_5: AAA domain (dy 97.6 3.2E-05 6.9E-10 59.9 2.3 89 199-300 2-90 (139)
136 PRK11034 clpA ATP-dependent Cl 97.6 0.00031 6.7E-09 69.1 9.6 122 170-302 459-584 (758)
137 PRK07261 topology modulation p 97.6 0.00017 3.7E-09 58.0 6.5 54 198-251 2-56 (171)
138 cd01120 RecA-like_NTPases RecA 97.6 0.0008 1.7E-08 53.1 10.4 40 198-239 1-40 (165)
139 TIGR00602 rad24 checkpoint pro 97.6 0.0002 4.4E-09 68.7 7.9 50 169-219 84-133 (637)
140 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00058 1.3E-08 57.9 10.0 92 194-286 17-126 (235)
141 PF14532 Sigma54_activ_2: Sigm 97.6 0.00012 2.5E-09 56.7 5.1 106 172-313 1-108 (138)
142 PRK05563 DNA polymerase III su 97.6 0.001 2.2E-08 63.6 12.4 132 169-312 16-156 (559)
143 cd01393 recA_like RecA is a b 97.6 0.00068 1.5E-08 57.1 10.2 89 194-285 17-124 (226)
144 cd01394 radB RadB. The archaea 97.6 0.00066 1.4E-08 56.9 9.9 88 194-285 17-113 (218)
145 PRK10787 DNA-binding ATP-depen 97.6 0.0012 2.6E-08 65.4 13.0 50 169-218 322-371 (784)
146 PF00910 RNA_helicase: RNA hel 97.6 0.00019 4.1E-09 53.0 5.7 21 199-219 1-21 (107)
147 KOG0989 Replication factor C, 97.6 0.00037 8E-09 59.8 8.0 127 169-312 36-166 (346)
148 PRK12608 transcription termina 97.6 0.00065 1.4E-08 60.8 9.9 102 178-285 120-230 (380)
149 PRK06620 hypothetical protein; 97.5 0.00015 3.4E-09 60.5 5.5 22 197-218 45-66 (214)
150 PRK10865 protein disaggregatio 97.5 0.00029 6.2E-09 70.7 8.2 45 169-219 178-222 (857)
151 PHA00729 NTP-binding motif con 97.5 0.0017 3.7E-08 54.1 10.9 25 195-219 16-40 (226)
152 PF07724 AAA_2: AAA domain (Cd 97.5 0.0001 2.2E-09 59.2 3.6 90 196-300 3-104 (171)
153 TIGR02012 tigrfam_recA protein 97.5 0.00066 1.4E-08 59.9 8.7 85 194-285 53-143 (321)
154 TIGR02880 cbbX_cfxQ probable R 97.4 0.00081 1.7E-08 58.7 9.1 21 198-218 60-80 (284)
155 PRK08058 DNA polymerase III su 97.4 0.0013 2.9E-08 58.7 10.6 121 170-313 6-148 (329)
156 PRK05703 flhF flagellar biosyn 97.4 0.0029 6.4E-08 58.3 13.0 40 196-235 221-260 (424)
157 PTZ00454 26S protease regulato 97.4 0.0017 3.8E-08 59.3 11.4 50 169-218 145-201 (398)
158 PF08423 Rad51: Rad51; InterP 97.4 0.0012 2.5E-08 56.8 9.7 89 195-284 37-142 (256)
159 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.0014 3.1E-08 51.6 9.3 115 197-314 3-137 (159)
160 TIGR03689 pup_AAA proteasome A 97.4 0.00056 1.2E-08 64.1 8.1 51 169-219 182-239 (512)
161 COG1875 NYN ribonuclease and A 97.4 0.0018 3.8E-08 57.1 10.5 131 172-311 227-384 (436)
162 TIGR03499 FlhF flagellar biosy 97.4 0.0012 2.5E-08 57.7 9.6 88 195-284 193-281 (282)
163 cd00983 recA RecA is a bacter 97.4 0.00089 1.9E-08 59.1 8.8 85 194-285 53-143 (325)
164 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00057 1.2E-08 68.7 8.6 45 169-219 173-217 (852)
165 CHL00181 cbbX CbbX; Provisiona 97.4 0.0013 2.8E-08 57.5 9.8 23 197-219 60-82 (287)
166 COG2255 RuvB Holliday junction 97.4 0.00036 7.8E-09 59.3 5.9 50 169-219 26-75 (332)
167 TIGR02238 recomb_DMC1 meiotic 97.4 0.0012 2.7E-08 58.2 9.6 91 194-285 94-201 (313)
168 COG1373 Predicted ATPase (AAA+ 97.4 0.0016 3.5E-08 59.6 10.7 91 198-313 39-129 (398)
169 PRK09354 recA recombinase A; P 97.4 0.001 2.3E-08 59.2 9.0 85 194-285 58-148 (349)
170 PF00448 SRP54: SRP54-type pro 97.4 0.0013 2.8E-08 54.1 9.0 55 196-252 1-56 (196)
171 PF13604 AAA_30: AAA domain; P 97.4 0.00029 6.3E-09 58.0 5.1 103 197-311 19-127 (196)
172 PF13207 AAA_17: AAA domain; P 97.4 0.00014 3E-09 54.7 3.0 21 198-218 1-21 (121)
173 PRK11034 clpA ATP-dependent Cl 97.4 0.00025 5.4E-09 69.7 5.3 44 169-218 186-229 (758)
174 PRK06067 flagellar accessory p 97.4 0.0024 5.3E-08 54.1 10.8 87 194-285 23-130 (234)
175 PF00158 Sigma54_activat: Sigm 97.3 0.00052 1.1E-08 55.0 6.0 126 171-313 1-142 (168)
176 KOG1969 DNA replication checkp 97.3 0.00072 1.6E-08 64.4 7.2 88 194-299 324-411 (877)
177 PLN03186 DNA repair protein RA 97.3 0.002 4.3E-08 57.6 9.8 91 194-285 121-228 (342)
178 PRK11889 flhF flagellar biosyn 97.3 0.0057 1.2E-07 55.2 12.5 24 195-218 240-263 (436)
179 PRK12723 flagellar biosynthesi 97.3 0.0038 8.2E-08 56.7 11.5 90 195-286 173-265 (388)
180 TIGR02239 recomb_RAD51 DNA rep 97.3 0.003 6.4E-08 56.0 10.5 91 194-285 94-201 (316)
181 PRK05707 DNA polymerase III su 97.3 0.0025 5.4E-08 56.8 10.0 42 273-314 104-145 (328)
182 COG0468 RecA RecA/RadA recombi 97.2 0.0021 4.5E-08 55.5 9.0 91 194-286 58-152 (279)
183 PRK06696 uridine kinase; Valid 97.2 0.0012 2.6E-08 55.6 7.4 43 174-219 3-45 (223)
184 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0021 4.6E-08 55.3 8.9 87 196-284 69-172 (274)
185 COG3899 Predicted ATPase [Gene 97.2 0.0017 3.7E-08 65.0 9.5 45 171-218 2-46 (849)
186 PRK12724 flagellar biosynthesi 97.2 0.0029 6.4E-08 57.6 9.9 25 195-219 222-246 (432)
187 CHL00176 ftsH cell division pr 97.2 0.0024 5.1E-08 61.8 9.8 50 169-218 183-238 (638)
188 PLN03187 meiotic recombination 97.2 0.0032 7E-08 56.2 10.0 91 194-285 124-231 (344)
189 PRK11608 pspF phage shock prot 97.2 0.0021 4.5E-08 57.4 8.7 130 170-313 7-149 (326)
190 KOG1051 Chaperone HSP104 and r 97.2 0.0035 7.6E-08 62.0 10.8 122 170-302 563-687 (898)
191 PRK12727 flagellar biosynthesi 97.2 0.0031 6.6E-08 59.0 9.8 25 195-219 349-373 (559)
192 PRK00771 signal recognition pa 97.2 0.0078 1.7E-07 55.6 12.4 58 194-253 93-151 (437)
193 cd03115 SRP The signal recogni 97.2 0.0049 1.1E-07 49.5 10.0 22 198-219 2-23 (173)
194 TIGR02236 recomb_radA DNA repa 97.1 0.0042 9.2E-08 55.0 10.3 92 194-286 93-203 (310)
195 PRK07399 DNA polymerase III su 97.1 0.0054 1.2E-07 54.3 10.8 138 169-313 4-161 (314)
196 cd03214 ABC_Iron-Siderophores_ 97.1 0.004 8.6E-08 50.5 9.3 115 196-314 25-157 (180)
197 PRK04301 radA DNA repair and r 97.1 0.0051 1.1E-07 54.7 10.8 91 194-285 100-208 (317)
198 PRK10867 signal recognition pa 97.1 0.006 1.3E-07 56.2 11.3 25 194-218 98-122 (433)
199 KOG2228 Origin recognition com 97.1 0.0043 9.3E-08 54.2 9.7 140 169-313 24-180 (408)
200 PRK14722 flhF flagellar biosyn 97.1 0.003 6.5E-08 57.0 9.0 58 196-253 137-195 (374)
201 PRK15429 formate hydrogenlyase 97.1 0.0023 4.9E-08 63.1 9.1 132 169-313 376-519 (686)
202 PF07693 KAP_NTPase: KAP famil 97.1 0.0065 1.4E-07 54.1 11.3 43 176-221 3-45 (325)
203 cd01131 PilT Pilus retraction 97.1 0.0014 3.1E-08 54.0 6.5 105 197-313 2-107 (198)
204 TIGR00959 ffh signal recogniti 97.1 0.0071 1.5E-07 55.7 11.5 26 194-219 97-122 (428)
205 COG1223 Predicted ATPase (AAA+ 97.1 0.0021 4.5E-08 54.2 7.2 51 169-219 121-174 (368)
206 PTZ00035 Rad51 protein; Provis 97.1 0.0053 1.1E-07 54.9 10.4 92 194-286 116-224 (337)
207 PRK14974 cell division protein 97.1 0.0084 1.8E-07 53.4 11.6 25 195-219 139-163 (336)
208 cd03281 ABC_MSH5_euk MutS5 hom 97.1 0.0016 3.5E-08 54.3 6.7 23 196-218 29-51 (213)
209 PRK12726 flagellar biosynthesi 97.1 0.008 1.7E-07 54.1 11.2 57 194-252 204-261 (407)
210 PF12061 DUF3542: Protein of u 97.1 0.0032 7E-08 54.1 8.3 105 4-135 296-401 (402)
211 KOG0991 Replication factor C, 97.1 0.0018 3.9E-08 53.6 6.5 100 169-297 27-135 (333)
212 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0079 1.7E-07 51.1 10.8 88 194-286 19-137 (237)
213 PRK13695 putative NTPase; Prov 97.0 0.00061 1.3E-08 54.9 3.7 22 198-219 2-23 (174)
214 PRK15455 PrkA family serine pr 97.0 0.0005 1.1E-08 64.6 3.5 50 170-219 77-126 (644)
215 PRK08233 hypothetical protein; 97.0 0.0024 5.1E-08 51.7 7.2 23 196-218 3-25 (182)
216 TIGR01241 FtsH_fam ATP-depende 97.0 0.0027 5.9E-08 60.1 8.0 50 169-218 55-110 (495)
217 cd03247 ABCC_cytochrome_bd The 97.0 0.0048 1E-07 49.9 8.4 24 196-219 28-51 (178)
218 TIGR02974 phageshock_pspF psp 97.0 0.0023 4.9E-08 57.1 6.9 131 171-313 1-142 (329)
219 cd02025 PanK Pantothenate kina 97.0 0.0049 1.1E-07 51.7 8.5 22 198-219 1-22 (220)
220 COG3903 Predicted ATPase [Gene 97.0 0.00035 7.7E-09 62.4 1.6 113 194-313 12-125 (414)
221 COG1222 RPT1 ATP-dependent 26S 96.9 0.0042 9E-08 54.7 8.1 96 170-286 152-255 (406)
222 KOG0734 AAA+-type ATPase conta 96.9 0.003 6.4E-08 58.4 7.4 50 170-219 305-360 (752)
223 PRK06762 hypothetical protein; 96.9 0.0064 1.4E-07 48.5 8.8 23 196-218 2-24 (166)
224 TIGR01243 CDC48 AAA family ATP 96.9 0.0032 7E-08 62.5 8.4 50 169-218 178-234 (733)
225 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.013 2.7E-07 49.5 10.9 42 194-237 18-59 (229)
226 TIGR01817 nifA Nif-specific re 96.9 0.0048 1E-07 59.0 9.3 132 167-313 194-339 (534)
227 PF00485 PRK: Phosphoribulokin 96.9 0.0067 1.4E-07 49.8 8.9 22 198-219 1-22 (194)
228 PRK06871 DNA polymerase III su 96.9 0.014 3.1E-07 51.7 11.4 41 273-313 105-145 (325)
229 TIGR00064 ftsY signal recognit 96.9 0.0089 1.9E-07 51.8 9.9 39 194-234 70-108 (272)
230 PTZ00361 26 proteosome regulat 96.9 0.0013 2.9E-08 60.6 5.0 50 169-218 183-239 (438)
231 PRK05022 anaerobic nitric oxid 96.9 0.0056 1.2E-07 58.1 9.4 132 168-313 186-330 (509)
232 PF05659 RPW8: Arabidopsis bro 96.9 0.048 1E-06 42.4 12.9 83 2-84 3-86 (147)
233 KOG0733 Nuclear AAA ATPase (VC 96.9 0.0042 9E-08 58.3 8.0 98 169-286 190-293 (802)
234 cd01122 GP4d_helicase GP4d_hel 96.9 0.017 3.7E-07 50.0 11.6 51 196-249 30-80 (271)
235 PF12775 AAA_7: P-loop contain 96.9 0.0012 2.5E-08 57.3 4.2 95 178-291 22-116 (272)
236 cd03216 ABC_Carb_Monos_I This 96.9 0.0032 7E-08 50.2 6.4 112 196-314 26-141 (163)
237 PRK08533 flagellar accessory p 96.9 0.011 2.4E-07 49.9 10.0 49 195-247 23-71 (230)
238 PRK09270 nucleoside triphospha 96.9 0.0059 1.3E-07 51.6 8.4 26 194-219 31-56 (229)
239 PF14516 AAA_35: AAA-like doma 96.9 0.012 2.6E-07 52.6 10.8 111 168-287 10-139 (331)
240 cd03238 ABC_UvrA The excision 96.9 0.0043 9.4E-08 50.1 7.2 23 196-218 21-43 (176)
241 PF00154 RecA: recA bacterial 96.9 0.0032 6.9E-08 55.5 6.8 86 194-286 51-142 (322)
242 PRK00889 adenylylsulfate kinas 96.9 0.0089 1.9E-07 48.2 8.9 25 195-219 3-27 (175)
243 PRK07667 uridine kinase; Provi 96.8 0.0036 7.8E-08 51.4 6.7 38 178-219 3-40 (193)
244 PRK06090 DNA polymerase III su 96.8 0.019 4.2E-07 50.8 11.6 41 273-313 106-146 (319)
245 cd02027 APSK Adenosine 5'-phos 96.8 0.0061 1.3E-07 47.8 7.7 22 198-219 1-22 (149)
246 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.0071 1.5E-07 47.1 8.0 24 196-219 26-49 (144)
247 PTZ00301 uridine kinase; Provi 96.8 0.0019 4.1E-08 53.7 4.9 23 196-218 3-25 (210)
248 KOG0744 AAA+-type ATPase [Post 96.8 0.003 6.6E-08 54.8 6.1 80 196-285 177-260 (423)
249 PLN00020 ribulose bisphosphate 96.8 0.0018 3.9E-08 57.7 4.8 26 194-219 146-171 (413)
250 KOG2170 ATPase of the AAA+ sup 96.8 0.0025 5.5E-08 54.7 5.4 115 169-300 82-203 (344)
251 PRK06995 flhF flagellar biosyn 96.8 0.0094 2E-07 55.6 9.6 57 196-252 256-313 (484)
252 cd03223 ABCD_peroxisomal_ALDP 96.8 0.012 2.7E-07 46.9 9.2 24 196-219 27-50 (166)
253 TIGR00708 cobA cob(I)alamin ad 96.8 0.02 4.3E-07 45.8 10.1 117 196-314 5-139 (173)
254 PF13238 AAA_18: AAA domain; P 96.8 0.001 2.2E-08 50.3 2.7 21 199-219 1-21 (129)
255 PHA02244 ATPase-like protein 96.8 0.0075 1.6E-07 54.0 8.4 22 198-219 121-142 (383)
256 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.011 2.4E-07 50.2 9.0 23 196-218 30-52 (254)
257 PTZ00494 tuzin-like protein; P 96.8 0.034 7.4E-07 50.8 12.4 106 166-282 368-478 (664)
258 cd03228 ABCC_MRP_Like The MRP 96.8 0.0087 1.9E-07 48.0 8.1 23 196-218 28-50 (171)
259 cd00984 DnaB_C DnaB helicase C 96.7 0.04 8.6E-07 46.8 12.6 41 195-236 12-52 (242)
260 KOG0735 AAA+-type ATPase [Post 96.7 0.0048 1E-07 58.9 7.3 73 195-285 430-504 (952)
261 PRK05973 replicative DNA helic 96.7 0.019 4.2E-07 48.5 10.3 49 195-247 63-111 (237)
262 PRK05439 pantothenate kinase; 96.7 0.015 3.3E-07 51.1 10.0 25 194-218 84-108 (311)
263 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0077 1.7E-07 48.6 7.6 23 196-218 25-47 (177)
264 KOG0729 26S proteasome regulat 96.7 0.014 3E-07 49.4 9.1 58 169-228 177-241 (435)
265 PRK04328 hypothetical protein; 96.7 0.013 2.7E-07 50.3 9.3 87 194-285 21-138 (249)
266 TIGR00382 clpX endopeptidase C 96.7 0.013 2.7E-07 53.8 9.7 50 169-218 77-138 (413)
267 TIGR01425 SRP54_euk signal rec 96.7 0.021 4.6E-07 52.4 11.2 26 194-219 98-123 (429)
268 cd01125 repA Hexameric Replica 96.7 0.015 3.2E-07 49.5 9.6 22 198-219 3-24 (239)
269 TIGR00554 panK_bact pantothena 96.7 0.012 2.7E-07 51.2 9.2 25 194-218 60-84 (290)
270 COG0572 Udk Uridine kinase [Nu 96.7 0.0046 1E-07 51.1 6.1 25 194-218 6-30 (218)
271 COG1102 Cmk Cytidylate kinase 96.7 0.004 8.7E-08 48.6 5.4 44 198-254 2-45 (179)
272 PF13671 AAA_33: AAA domain; P 96.7 0.0015 3.1E-08 50.7 3.1 21 198-218 1-21 (143)
273 PRK14721 flhF flagellar biosyn 96.7 0.016 3.4E-07 53.2 10.1 24 195-218 190-213 (420)
274 COG1618 Predicted nucleotide k 96.7 0.0022 4.7E-08 50.1 3.9 26 195-220 4-29 (179)
275 PRK08769 DNA polymerase III su 96.7 0.029 6.3E-07 49.7 11.5 41 273-313 111-151 (319)
276 PRK14723 flhF flagellar biosyn 96.7 0.014 3E-07 57.3 10.1 57 196-252 185-242 (767)
277 PRK08699 DNA polymerase III su 96.7 0.018 3.9E-07 51.3 10.1 41 274-314 112-152 (325)
278 KOG1532 GTPase XAB1, interacts 96.7 0.0019 4.2E-08 54.6 3.6 29 194-222 17-45 (366)
279 cd01121 Sms Sms (bacterial rad 96.7 0.02 4.3E-07 51.9 10.5 85 194-286 80-169 (372)
280 PRK05480 uridine/cytidine kina 96.6 0.0018 3.8E-08 53.9 3.5 26 194-219 4-29 (209)
281 TIGR00235 udk uridine kinase. 96.6 0.0019 4E-08 53.7 3.6 26 194-219 4-29 (207)
282 PF03308 ArgK: ArgK protein; 96.6 0.004 8.8E-08 52.7 5.5 63 177-243 14-76 (266)
283 PRK03846 adenylylsulfate kinas 96.6 0.0068 1.5E-07 50.0 6.8 25 194-218 22-46 (198)
284 PHA02774 E1; Provisional 96.6 0.012 2.7E-07 55.5 9.0 51 177-236 420-470 (613)
285 PF08298 AAA_PrkA: PrkA AAA do 96.6 0.003 6.5E-08 55.9 4.7 50 169-218 61-110 (358)
286 PRK05917 DNA polymerase III su 96.6 0.041 8.8E-07 47.9 11.6 113 178-313 6-133 (290)
287 PTZ00088 adenylate kinase 1; P 96.6 0.0025 5.4E-08 53.7 4.1 21 198-218 8-28 (229)
288 cd03230 ABC_DR_subfamily_A Thi 96.6 0.013 2.9E-07 47.1 8.2 113 196-314 26-154 (173)
289 COG0714 MoxR-like ATPases [Gen 96.6 0.0048 1E-07 55.2 6.0 108 170-300 25-137 (329)
290 cd02028 UMPK_like Uridine mono 96.6 0.0066 1.4E-07 49.2 6.2 22 198-219 1-22 (179)
291 PRK09519 recA DNA recombinatio 96.6 0.013 2.9E-07 57.5 9.3 85 194-285 58-148 (790)
292 TIGR03878 thermo_KaiC_2 KaiC d 96.6 0.021 4.5E-07 49.2 9.6 41 194-236 34-74 (259)
293 PRK07993 DNA polymerase III su 96.6 0.034 7.4E-07 49.7 11.2 42 273-314 106-147 (334)
294 PRK05342 clpX ATP-dependent pr 96.6 0.014 3.1E-07 53.5 9.0 50 169-218 71-130 (412)
295 PRK10820 DNA-binding transcrip 96.5 0.015 3.2E-07 55.4 9.3 131 169-313 204-347 (520)
296 PRK06964 DNA polymerase III su 96.5 0.027 5.8E-07 50.4 10.4 41 273-313 130-170 (342)
297 cd02019 NK Nucleoside/nucleoti 96.5 0.0019 4.2E-08 43.4 2.4 22 198-219 1-22 (69)
298 PRK05986 cob(I)alamin adenolsy 96.5 0.022 4.7E-07 46.3 8.9 117 196-314 22-157 (191)
299 COG1703 ArgK Putative periplas 96.5 0.0039 8.4E-08 53.6 4.8 66 179-248 38-103 (323)
300 cd03246 ABCC_Protease_Secretio 96.5 0.01 2.2E-07 47.8 7.1 23 196-218 28-50 (173)
301 PF13481 AAA_25: AAA domain; P 96.5 0.022 4.7E-07 46.6 9.0 88 197-286 33-152 (193)
302 PF06745 KaiC: KaiC; InterPro 96.5 0.0096 2.1E-07 50.1 7.1 88 194-285 17-125 (226)
303 TIGR02858 spore_III_AA stage I 96.5 0.012 2.6E-07 50.9 7.6 123 177-313 97-227 (270)
304 TIGR02655 circ_KaiC circadian 96.5 0.031 6.7E-07 52.7 11.0 87 194-285 261-363 (484)
305 KOG0741 AAA+-type ATPase [Post 96.5 0.013 2.9E-07 54.2 8.1 33 194-230 536-568 (744)
306 PF03969 AFG1_ATPase: AFG1-lik 96.5 0.0078 1.7E-07 54.3 6.6 102 194-314 60-166 (362)
307 COG0467 RAD55 RecA-superfamily 96.5 0.0084 1.8E-07 51.7 6.6 87 194-285 21-134 (260)
308 COG2884 FtsE Predicted ATPase 96.4 0.051 1.1E-06 43.9 10.3 26 195-220 27-52 (223)
309 PRK13531 regulatory ATPase Rav 96.4 0.0037 8E-08 57.9 4.4 42 169-218 20-61 (498)
310 TIGR01360 aden_kin_iso1 adenyl 96.4 0.0026 5.7E-08 51.7 3.1 24 195-218 2-25 (188)
311 TIGR02868 CydC thiol reductant 96.4 0.023 5E-07 54.3 9.9 25 194-218 359-383 (529)
312 PF01583 APS_kinase: Adenylyls 96.4 0.007 1.5E-07 47.6 5.2 87 196-284 2-108 (156)
313 PRK06547 hypothetical protein; 96.4 0.0032 7E-08 50.6 3.5 26 194-219 13-38 (172)
314 COG4608 AppF ABC-type oligopep 96.4 0.021 4.6E-07 48.6 8.4 89 195-286 38-138 (268)
315 TIGR03880 KaiC_arch_3 KaiC dom 96.4 0.034 7.3E-07 46.7 9.8 49 194-246 14-62 (224)
316 PRK03839 putative kinase; Prov 96.4 0.0026 5.6E-08 51.5 2.9 22 198-219 2-23 (180)
317 COG0563 Adk Adenylate kinase a 96.4 0.0097 2.1E-07 48.1 6.2 22 198-219 2-23 (178)
318 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0051 1.1E-07 47.0 4.3 39 177-219 7-45 (133)
319 PRK11388 DNA-binding transcrip 96.4 0.0099 2.1E-07 58.2 7.3 117 169-301 325-442 (638)
320 smart00534 MUTSac ATPase domai 96.4 0.0041 8.8E-08 50.7 4.0 21 198-218 1-21 (185)
321 TIGR01420 pilT_fam pilus retra 96.4 0.0092 2E-07 53.6 6.5 106 196-312 122-227 (343)
322 COG0542 clpA ATP-binding subun 96.4 0.0074 1.6E-07 59.0 6.2 44 169-218 170-213 (786)
323 cd03282 ABC_MSH4_euk MutS4 hom 96.4 0.014 3.1E-07 48.3 7.1 23 196-218 29-51 (204)
324 PF08433 KTI12: Chromatin asso 96.3 0.0058 1.2E-07 52.8 4.8 23 197-219 2-24 (270)
325 KOG3347 Predicted nucleotide k 96.3 0.0063 1.4E-07 46.8 4.2 67 196-272 7-73 (176)
326 PF06309 Torsin: Torsin; Inte 96.3 0.0078 1.7E-07 45.2 4.7 51 169-219 25-76 (127)
327 PRK10875 recD exonuclease V su 96.3 0.029 6.4E-07 54.2 9.8 53 197-249 168-221 (615)
328 COG0194 Gmk Guanylate kinase [ 96.3 0.017 3.7E-07 46.4 6.8 24 196-219 4-27 (191)
329 PF07726 AAA_3: ATPase family 96.3 0.0036 7.7E-08 47.2 2.8 40 199-243 2-41 (131)
330 PRK10416 signal recognition pa 96.3 0.044 9.6E-07 48.6 10.1 26 195-220 113-138 (318)
331 TIGR01069 mutS2 MutS2 family p 96.2 0.16 3.6E-06 50.6 15.0 28 58-85 144-171 (771)
332 PRK04040 adenylate kinase; Pro 96.2 0.0038 8.2E-08 51.0 3.1 23 196-218 2-24 (188)
333 TIGR02329 propionate_PrpR prop 96.2 0.015 3.2E-07 55.3 7.4 120 169-301 212-333 (526)
334 TIGR00041 DTMP_kinase thymidyl 96.2 0.026 5.7E-07 46.2 8.1 24 197-220 4-27 (195)
335 PRK11823 DNA repair protein Ra 96.2 0.05 1.1E-06 50.7 10.6 85 194-286 78-167 (446)
336 COG2812 DnaX DNA polymerase II 96.2 0.0041 8.9E-08 58.1 3.4 135 169-313 16-157 (515)
337 cd03369 ABCC_NFT1 Domain 2 of 96.2 0.07 1.5E-06 44.2 10.6 23 196-218 34-56 (207)
338 cd02023 UMPK Uridine monophosp 96.2 0.0032 6.9E-08 51.9 2.4 21 198-218 1-21 (198)
339 PRK00625 shikimate kinase; Pro 96.2 0.004 8.6E-08 50.1 2.9 21 198-218 2-22 (173)
340 PRK12597 F0F1 ATP synthase sub 96.2 0.03 6.4E-07 52.0 8.9 89 195-284 142-246 (461)
341 cd03287 ABC_MSH3_euk MutS3 hom 96.2 0.032 6.9E-07 46.8 8.4 23 196-218 31-53 (222)
342 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.0034 7.3E-08 51.0 2.4 21 198-218 1-21 (183)
343 KOG0739 AAA+-type ATPase [Post 96.2 0.24 5.2E-06 42.9 13.4 97 169-286 133-236 (439)
344 PRK00131 aroK shikimate kinase 96.2 0.0043 9.3E-08 49.7 2.9 23 196-218 4-26 (175)
345 TIGR00390 hslU ATP-dependent p 96.1 0.019 4.1E-07 52.3 7.1 51 169-219 12-70 (441)
346 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.019 4.1E-07 45.3 6.5 110 197-314 26-139 (157)
347 cd03213 ABCG_EPDR ABCG transpo 96.1 0.044 9.5E-07 45.0 8.8 23 196-218 35-57 (194)
348 PRK06002 fliI flagellum-specif 96.1 0.032 6.9E-07 51.5 8.6 86 196-284 165-263 (450)
349 PF00006 ATP-synt_ab: ATP synt 96.1 0.031 6.7E-07 46.6 7.9 84 197-284 16-114 (215)
350 PF08477 Miro: Miro-like prote 96.1 0.0048 1E-07 46.0 2.8 22 199-220 2-23 (119)
351 TIGR03522 GldA_ABC_ATP gliding 96.1 0.059 1.3E-06 47.5 10.1 23 196-218 28-50 (301)
352 TIGR02322 phosphon_PhnN phosph 96.1 0.0049 1.1E-07 49.8 3.0 23 197-219 2-24 (179)
353 PF13245 AAA_19: Part of AAA d 96.1 0.02 4.3E-07 39.2 5.5 22 197-218 11-33 (76)
354 PRK07594 type III secretion sy 96.1 0.039 8.5E-07 50.8 8.9 86 195-284 154-254 (433)
355 TIGR00416 sms DNA repair prote 96.1 0.056 1.2E-06 50.4 10.1 85 194-286 92-181 (454)
356 TIGR01447 recD exodeoxyribonuc 96.1 0.041 8.8E-07 53.0 9.4 52 197-248 161-214 (586)
357 PF00625 Guanylate_kin: Guanyl 96.0 0.0082 1.8E-07 48.8 4.1 37 196-234 2-38 (183)
358 PRK08972 fliI flagellum-specif 96.0 0.044 9.4E-07 50.4 9.1 85 196-284 162-261 (444)
359 TIGR03263 guanyl_kin guanylate 96.0 0.0052 1.1E-07 49.7 3.0 22 197-218 2-23 (180)
360 PF03205 MobB: Molybdopterin g 96.0 0.007 1.5E-07 46.9 3.5 39 197-236 1-39 (140)
361 COG1428 Deoxynucleoside kinase 96.0 0.0051 1.1E-07 50.3 2.8 24 196-219 4-27 (216)
362 COG1419 FlhF Flagellar GTP-bin 96.0 0.043 9.3E-07 49.5 8.8 23 195-217 202-224 (407)
363 cd01124 KaiC KaiC is a circadi 96.0 0.018 3.8E-07 46.7 6.0 44 199-246 2-45 (187)
364 cd00227 CPT Chloramphenicol (C 96.0 0.0052 1.1E-07 49.5 2.8 22 197-218 3-24 (175)
365 cd03217 ABC_FeS_Assembly ABC-t 96.0 0.034 7.5E-07 45.8 7.7 24 196-219 26-49 (200)
366 cd01135 V_A-ATPase_B V/A-type 96.0 0.042 9.1E-07 47.3 8.3 90 196-285 69-176 (276)
367 PRK10751 molybdopterin-guanine 96.0 0.0073 1.6E-07 48.4 3.5 25 195-219 5-29 (173)
368 PRK15424 propionate catabolism 96.0 0.023 5E-07 54.0 7.4 47 169-219 219-265 (538)
369 cd02021 GntK Gluconate kinase 96.0 0.0048 1E-07 48.3 2.5 21 198-218 1-21 (150)
370 PRK06731 flhF flagellar biosyn 96.0 0.12 2.5E-06 44.8 11.0 23 196-218 75-97 (270)
371 COG0464 SpoVK ATPases of the A 96.0 0.015 3.2E-07 55.1 6.1 72 194-286 274-346 (494)
372 KOG0733 Nuclear AAA ATPase (VC 96.0 0.022 4.9E-07 53.6 6.9 71 196-286 545-615 (802)
373 cd00046 DEXDc DEAD-like helica 95.9 0.053 1.2E-06 40.9 8.2 36 198-233 2-37 (144)
374 cd02024 NRK1 Nicotinamide ribo 95.9 0.0049 1.1E-07 50.2 2.4 22 198-219 1-22 (187)
375 COG1066 Sms Predicted ATP-depe 95.9 0.034 7.3E-07 50.1 7.7 83 195-286 92-179 (456)
376 PRK06217 hypothetical protein; 95.9 0.0064 1.4E-07 49.4 3.1 35 198-233 3-39 (183)
377 cd02020 CMPK Cytidine monophos 95.9 0.0052 1.1E-07 47.7 2.4 21 198-218 1-21 (147)
378 cd01672 TMPK Thymidine monopho 95.9 0.022 4.7E-07 46.6 6.3 23 198-220 2-24 (200)
379 smart00487 DEXDc DEAD-like hel 95.9 0.037 7.9E-07 44.7 7.5 20 197-216 25-44 (201)
380 PRK05201 hslU ATP-dependent pr 95.9 0.025 5.3E-07 51.7 6.8 51 169-219 15-73 (443)
381 PF03796 DnaB_C: DnaB-like hel 95.9 0.071 1.5E-06 45.9 9.5 55 196-253 19-73 (259)
382 PF13086 AAA_11: AAA domain; P 95.9 0.029 6.4E-07 46.9 7.0 52 198-249 19-75 (236)
383 PRK09280 F0F1 ATP synthase sub 95.9 0.063 1.4E-06 49.8 9.5 89 195-284 143-247 (463)
384 COG1936 Predicted nucleotide k 95.9 0.0062 1.3E-07 48.2 2.5 20 198-217 2-21 (180)
385 PRK12678 transcription termina 95.9 0.019 4.1E-07 54.2 6.0 86 195-284 415-512 (672)
386 PRK13949 shikimate kinase; Pro 95.9 0.0065 1.4E-07 48.7 2.7 21 198-218 3-23 (169)
387 PRK08927 fliI flagellum-specif 95.9 0.037 8.1E-07 51.0 7.9 86 195-284 157-257 (442)
388 PRK05800 cobU adenosylcobinami 95.9 0.029 6.4E-07 45.0 6.5 80 198-284 3-85 (170)
389 PRK00300 gmk guanylate kinase; 95.8 0.0073 1.6E-07 49.9 3.1 25 195-219 4-28 (205)
390 PF00025 Arf: ADP-ribosylation 95.8 0.034 7.4E-07 44.8 6.9 106 194-300 12-141 (175)
391 PF03193 DUF258: Protein of un 95.8 0.013 2.8E-07 46.3 4.2 36 175-219 23-58 (161)
392 PRK13947 shikimate kinase; Pro 95.8 0.0066 1.4E-07 48.6 2.7 21 198-218 3-23 (171)
393 CHL00195 ycf46 Ycf46; Provisio 95.8 0.029 6.3E-07 52.7 7.3 25 194-218 257-281 (489)
394 PRK10923 glnG nitrogen regulat 95.8 0.027 5.9E-07 52.9 7.2 62 170-237 139-200 (469)
395 cd00544 CobU Adenosylcobinamid 95.8 0.027 5.9E-07 45.1 6.2 78 199-284 2-82 (169)
396 TIGR00455 apsK adenylylsulfate 95.8 0.06 1.3E-06 43.7 8.4 26 194-219 16-41 (184)
397 PTZ00185 ATPase alpha subunit; 95.8 0.071 1.5E-06 49.9 9.5 91 196-286 189-300 (574)
398 PRK09302 circadian clock prote 95.8 0.087 1.9E-06 50.1 10.5 87 194-285 271-373 (509)
399 PF13479 AAA_24: AAA domain 95.8 0.051 1.1E-06 45.3 8.0 20 197-216 4-23 (213)
400 PRK11174 cysteine/glutathione 95.8 0.053 1.1E-06 52.6 9.2 24 195-218 375-398 (588)
401 COG4618 ArpD ABC-type protease 95.8 0.032 6.9E-07 51.5 7.1 23 196-218 362-384 (580)
402 PRK10078 ribose 1,5-bisphospho 95.8 0.0081 1.8E-07 49.0 3.1 22 197-218 3-24 (186)
403 TIGR00750 lao LAO/AO transport 95.8 0.021 4.6E-07 50.3 5.9 26 194-219 32-57 (300)
404 PRK09435 membrane ATPase/prote 95.8 0.028 6.1E-07 50.0 6.6 26 194-219 54-79 (332)
405 PRK14530 adenylate kinase; Pro 95.8 0.0073 1.6E-07 50.5 2.8 21 198-218 5-25 (215)
406 PF03029 ATP_bind_1: Conserved 95.8 0.0072 1.6E-07 51.3 2.7 21 201-221 1-21 (238)
407 TIGR02655 circ_KaiC circadian 95.8 0.094 2E-06 49.5 10.4 87 194-284 19-129 (484)
408 PRK15453 phosphoribulokinase; 95.7 0.073 1.6E-06 46.0 8.7 25 194-218 3-27 (290)
409 PRK08149 ATP synthase SpaL; Va 95.7 0.079 1.7E-06 48.7 9.5 85 196-284 151-250 (428)
410 PRK05922 type III secretion sy 95.7 0.074 1.6E-06 49.0 9.2 85 196-284 157-256 (434)
411 cd01132 F1_ATPase_alpha F1 ATP 95.7 0.081 1.8E-06 45.6 8.9 86 196-285 69-171 (274)
412 TIGR03498 FliI_clade3 flagella 95.7 0.058 1.3E-06 49.6 8.5 85 196-284 140-239 (418)
413 PRK14738 gmk guanylate kinase; 95.7 0.011 2.4E-07 49.1 3.5 25 194-218 11-35 (206)
414 COG0541 Ffh Signal recognition 95.7 0.19 4.2E-06 45.7 11.5 73 178-253 79-156 (451)
415 TIGR01313 therm_gnt_kin carboh 95.7 0.0068 1.5E-07 48.2 2.2 20 199-218 1-20 (163)
416 cd00464 SK Shikimate kinase (S 95.7 0.0084 1.8E-07 47.0 2.7 20 199-218 2-21 (154)
417 PRK13975 thymidylate kinase; P 95.7 0.0095 2.1E-07 48.9 3.1 23 197-219 3-25 (196)
418 TIGR00764 lon_rel lon-related 95.7 0.026 5.5E-07 54.7 6.4 72 169-251 18-90 (608)
419 PF03266 NTPase_1: NTPase; In 95.7 0.0087 1.9E-07 47.9 2.7 22 199-220 2-23 (168)
420 cd00071 GMPK Guanosine monopho 95.7 0.0083 1.8E-07 46.3 2.5 21 198-218 1-21 (137)
421 PRK14527 adenylate kinase; Pro 95.6 0.01 2.3E-07 48.5 3.2 24 195-218 5-28 (191)
422 cd03227 ABC_Class2 ABC-type Cl 95.6 0.098 2.1E-06 41.5 8.6 21 197-217 22-42 (162)
423 PRK05057 aroK shikimate kinase 95.6 0.0098 2.1E-07 47.8 2.8 23 196-218 4-26 (172)
424 PF01078 Mg_chelatase: Magnesi 95.6 0.021 4.6E-07 46.9 4.7 41 169-217 3-43 (206)
425 PRK12339 2-phosphoglycerate ki 95.6 0.012 2.5E-07 48.5 3.3 23 196-218 3-25 (197)
426 PF00005 ABC_tran: ABC transpo 95.6 0.011 2.5E-07 45.3 3.1 22 197-218 12-33 (137)
427 TIGR01243 CDC48 AAA family ATP 95.6 0.051 1.1E-06 54.1 8.3 50 169-218 453-509 (733)
428 cd01129 PulE-GspE PulE/GspE Th 95.6 0.068 1.5E-06 46.2 8.1 82 196-287 80-161 (264)
429 TIGR00073 hypB hydrogenase acc 95.6 0.012 2.6E-07 48.8 3.3 26 194-219 20-45 (207)
430 PRK13765 ATP-dependent proteas 95.6 0.024 5.1E-07 54.9 5.6 74 169-252 31-104 (637)
431 TIGR00991 3a0901s02IAP34 GTP-b 95.6 0.16 3.6E-06 44.5 10.3 26 194-219 36-61 (313)
432 TIGR02788 VirB11 P-type DNA tr 95.5 0.024 5.1E-07 50.2 5.3 23 196-218 144-166 (308)
433 PRK06936 type III secretion sy 95.5 0.062 1.3E-06 49.5 7.9 86 195-284 161-261 (439)
434 TIGR03305 alt_F1F0_F1_bet alte 95.5 0.069 1.5E-06 49.3 8.3 89 195-284 137-241 (449)
435 KOG0736 Peroxisome assembly fa 95.5 0.05 1.1E-06 52.7 7.4 97 170-286 673-775 (953)
436 PRK09302 circadian clock prote 95.5 0.078 1.7E-06 50.4 8.9 89 194-286 29-141 (509)
437 PRK13948 shikimate kinase; Pro 95.5 0.012 2.6E-07 47.8 2.9 25 194-218 8-32 (182)
438 PRK14737 gmk guanylate kinase; 95.5 0.014 3E-07 47.6 3.3 24 195-218 3-26 (186)
439 cd00820 PEPCK_HprK Phosphoenol 95.5 0.015 3.2E-07 42.6 3.1 22 196-217 15-36 (107)
440 PRK09099 type III secretion sy 95.5 0.057 1.2E-06 49.9 7.6 87 195-284 162-262 (441)
441 TIGR01818 ntrC nitrogen regula 95.5 0.05 1.1E-06 51.0 7.5 131 170-313 135-277 (463)
442 PLN02200 adenylate kinase fami 95.4 0.014 3E-07 49.5 3.3 24 195-218 42-65 (234)
443 CHL00081 chlI Mg-protoporyphyr 95.4 0.017 3.7E-07 51.7 4.0 48 166-219 14-61 (350)
444 cd03284 ABC_MutS1 MutS1 homolo 95.4 0.043 9.2E-07 45.9 6.2 22 197-218 31-52 (216)
445 PF01926 MMR_HSR1: 50S ribosom 95.4 0.014 3E-07 43.5 2.9 20 199-218 2-21 (116)
446 TIGR02768 TraA_Ti Ti-type conj 95.4 0.14 3.1E-06 50.9 10.7 23 197-219 369-391 (744)
447 PRK14493 putative bifunctional 95.4 0.023 4.9E-07 49.3 4.6 35 197-234 2-36 (274)
448 TIGR00176 mobB molybdopterin-g 95.4 0.011 2.4E-07 46.7 2.4 23 198-220 1-23 (155)
449 cd01136 ATPase_flagellum-secre 95.4 0.13 2.7E-06 45.7 9.3 85 196-284 69-168 (326)
450 PRK04132 replication factor C 95.4 0.11 2.3E-06 52.0 9.6 93 204-313 574-668 (846)
451 cd02029 PRK_like Phosphoribulo 95.4 0.056 1.2E-06 46.3 6.7 21 198-218 1-21 (277)
452 COG1100 GTPase SAR1 and relate 95.4 0.012 2.5E-07 49.1 2.6 24 197-220 6-29 (219)
453 TIGR03600 phage_DnaB phage rep 95.4 0.17 3.8E-06 46.8 10.6 54 195-251 193-246 (421)
454 COG3267 ExeA Type II secretory 95.4 0.19 4.1E-06 42.5 9.6 98 196-299 51-155 (269)
455 PF10443 RNA12: RNA12 protein; 95.4 0.057 1.2E-06 49.2 7.0 67 174-252 1-71 (431)
456 TIGR01448 recD_rel helicase, p 95.4 0.098 2.1E-06 51.8 9.4 40 197-237 339-378 (720)
457 COG0003 ArsA Predicted ATPase 95.4 0.036 7.9E-07 49.0 5.7 23 196-218 2-24 (322)
458 PRK08356 hypothetical protein; 95.3 0.018 3.8E-07 47.4 3.5 21 196-216 5-25 (195)
459 COG1124 DppF ABC-type dipeptid 95.3 0.015 3.2E-07 48.7 3.0 24 195-218 32-55 (252)
460 COG1126 GlnQ ABC-type polar am 95.3 0.015 3.3E-07 47.8 3.0 36 195-233 27-62 (240)
461 COG2842 Uncharacterized ATPase 95.3 0.12 2.6E-06 44.7 8.5 96 196-299 94-189 (297)
462 PRK06761 hypothetical protein; 95.3 0.028 6.1E-07 48.7 4.8 23 197-219 4-26 (282)
463 COG2019 AdkA Archaeal adenylat 95.3 0.016 3.6E-07 45.5 3.0 23 196-218 4-26 (189)
464 PF05707 Zot: Zonular occluden 95.3 0.017 3.6E-07 47.4 3.3 40 275-314 79-125 (193)
465 PF02374 ArsA_ATPase: Anion-tr 95.3 0.035 7.7E-07 49.0 5.5 22 197-218 2-23 (305)
466 PRK13946 shikimate kinase; Pro 95.3 0.014 3E-07 47.5 2.8 23 196-218 10-32 (184)
467 PRK06793 fliI flagellum-specif 95.3 0.057 1.2E-06 49.7 6.9 89 195-286 155-257 (432)
468 TIGR03496 FliI_clade1 flagella 95.3 0.1 2.2E-06 47.9 8.5 85 196-284 137-236 (411)
469 PRK05688 fliI flagellum-specif 95.3 0.11 2.3E-06 48.2 8.6 85 196-284 168-267 (451)
470 PRK14532 adenylate kinase; Pro 95.3 0.014 3E-07 47.6 2.7 20 199-218 3-22 (188)
471 COG3640 CooC CO dehydrogenase 95.2 0.04 8.7E-07 45.9 5.2 42 198-240 2-43 (255)
472 KOG0743 AAA+-type ATPase [Post 95.2 0.1 2.2E-06 47.6 8.2 23 197-219 236-258 (457)
473 COG2274 SunT ABC-type bacterio 95.2 3.6 7.8E-05 40.8 20.8 24 195-218 498-521 (709)
474 PF02367 UPF0079: Uncharacteri 95.2 0.037 8E-07 41.7 4.6 26 195-220 14-39 (123)
475 PRK04182 cytidylate kinase; Pr 95.2 0.016 3.5E-07 46.6 2.9 21 198-218 2-22 (180)
476 PF12780 AAA_8: P-loop contain 95.2 0.15 3.2E-06 44.1 8.9 83 197-300 32-114 (268)
477 cd02040 NifH NifH gene encodes 95.2 0.035 7.5E-07 48.0 5.1 39 197-237 2-40 (270)
478 COG0703 AroK Shikimate kinase 95.2 0.015 3.3E-07 46.2 2.6 22 197-218 3-24 (172)
479 TIGR01287 nifH nitrogenase iro 95.2 0.024 5.3E-07 49.2 4.2 23 197-219 1-23 (275)
480 COG5635 Predicted NTPase (NACH 95.2 0.014 3E-07 58.8 2.9 114 195-314 221-347 (824)
481 PRK06820 type III secretion sy 95.2 0.18 3.9E-06 46.6 9.9 83 196-285 163-263 (440)
482 cd04139 RalA_RalB RalA/RalB su 95.2 0.015 3.2E-07 45.8 2.6 22 198-219 2-23 (164)
483 COG1120 FepC ABC-type cobalami 95.2 0.017 3.6E-07 49.3 3.0 24 195-218 27-50 (258)
484 PRK09825 idnK D-gluconate kina 95.2 0.017 3.6E-07 46.7 2.9 22 197-218 4-25 (176)
485 cd01428 ADK Adenylate kinase ( 95.2 0.015 3.3E-07 47.5 2.7 20 199-218 2-21 (194)
486 PLN02924 thymidylate kinase 95.2 0.14 3.1E-06 42.9 8.5 28 194-221 14-41 (220)
487 cd04163 Era Era subfamily. Er 95.2 0.021 4.5E-07 44.8 3.4 24 196-219 3-26 (168)
488 TIGR02173 cyt_kin_arch cytidyl 95.2 0.017 3.8E-07 46.1 2.9 21 198-218 2-22 (171)
489 PF13521 AAA_28: AAA domain; P 95.2 0.013 2.8E-07 46.6 2.2 20 199-218 2-21 (163)
490 TIGR03375 type_I_sec_LssB type 95.2 0.17 3.8E-06 50.0 10.5 24 195-218 490-513 (694)
491 TIGR02030 BchI-ChlI magnesium 95.2 0.029 6.4E-07 50.1 4.6 44 169-218 4-47 (337)
492 COG1763 MobB Molybdopterin-gua 95.1 0.019 4.2E-07 45.3 3.0 23 196-218 2-24 (161)
493 TIGR03574 selen_PSTK L-seryl-t 95.1 0.014 2.9E-07 50.0 2.4 22 198-219 1-22 (249)
494 PRK10733 hflB ATP-dependent me 95.1 0.036 7.9E-07 54.1 5.6 22 197-218 186-207 (644)
495 PF09848 DUF2075: Uncharacteri 95.1 0.2 4.3E-06 45.2 10.0 42 197-238 2-43 (352)
496 TIGR02902 spore_lonB ATP-depen 95.1 0.024 5.3E-07 54.0 4.2 45 169-219 65-109 (531)
497 cd03285 ABC_MSH2_euk MutS2 hom 95.1 0.021 4.6E-07 47.9 3.5 24 195-218 29-52 (222)
498 PRK08472 fliI flagellum-specif 95.1 0.12 2.5E-06 47.8 8.4 83 195-284 156-255 (434)
499 PRK07132 DNA polymerase III su 95.1 0.22 4.8E-06 43.7 9.9 102 196-313 18-128 (299)
500 PF05970 PIF1: PIF1-like helic 95.1 0.051 1.1E-06 49.3 6.1 25 196-220 22-46 (364)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=287.72 Aligned_cols=288 Identities=23% Similarity=0.365 Sum_probs=220.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHhhhhhhhhHHH
Q 048765 3 DAIVSPLLEQLISVSAEELTQQVKLVKGAEQEVEKLTSHLQTIQAVLSDAEQRQVKEESVRVWLGRLKDVSYDIEDVLDE 82 (314)
Q Consensus 3 ~~~v~~~~~kl~~~l~~~l~~e~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~eD~ld~ 82 (314)
++.++..++++... +.+++..+.+.+..+..|+++|..++.++++++.++........|.+.+++++|++||.++.
T Consensus 2 ~~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~ 77 (889)
T KOG4658|consen 2 GACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWL 77 (889)
T ss_pred CeEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566677765 78899999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHHhhccc---cccccccccccCcccchhhhhhHHHHHHHHHHHHHHHHHHHhcccccCceecC--CCC-CCC
Q 048765 83 WITARRRLQMKQNAD---SAQKQVSSCFPASSIGFKKIILRQDIAVKIKGINKKLGVIATQKDMFKFVESG--GAS-SAR 156 (314)
Q Consensus 83 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~v~~~~~~~~~~~~~--~~~-~~~ 156 (314)
|.......+..+.-. ...+..|. ..+++..+..+..+..++..+....+.++..... ... ..+
T Consensus 78 ~~v~~~~~~~~~~l~~~~~~~~~~c~-----------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~ 146 (889)
T KOG4658|consen 78 FLVEEIERKANDLLSTRSVERQRLCL-----------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP 146 (889)
T ss_pred HHHHHHHHHHhHHhhhhHHHHHHHhh-----------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc
Confidence 987655443322110 01111111 1234455555555555555555555544432211 000 111
Q ss_pred CCCccccccccccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh-hhhcCceeEEEEcC
Q 048765 157 PGRVQSTSFIDEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE-VIRKFDKILWVCVS 235 (314)
Q Consensus 157 ~~~~~~~~~~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~F~~~~wv~~~ 235 (314)
.....+.+...... ||.+..++++.+.|..++ ..+++|+||||+||||||+.++|+.. ++.+|+.++||.+|
T Consensus 147 ~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VS 219 (889)
T KOG4658|consen 147 REKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVS 219 (889)
T ss_pred hhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEc
Confidence 11223333344444 999999999999998865 28999999999999999999999987 99999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCCCCCc--HHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 236 ETFEEFRVAKAMVEALDGHESHLGE--FQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 236 ~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
++++...++..|+..++.......+ ..++...|.+.|++|||||||||||+. .+|+.+..++|...+||||++|||
T Consensus 220 k~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTR 297 (889)
T KOG4658|consen 220 KEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTR 297 (889)
T ss_pred ccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEec
Confidence 9999999999999999875443322 368889999999999999999999998 679999999999889999999999
Q ss_pred C
Q 048765 314 K 314 (314)
Q Consensus 314 ~ 314 (314)
+
T Consensus 298 s 298 (889)
T KOG4658|consen 298 S 298 (889)
T ss_pred c
Confidence 6
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.92 E-value=7.8e-25 Score=191.88 Aligned_cols=135 Identities=36% Similarity=0.529 Sum_probs=110.6
Q ss_pred chhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcC
Q 048765 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDG 253 (314)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 253 (314)
|+.++++|.++|.... ...++|+|+||||+||||||+.++++...+.+|+.++|++++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 6889999999998754 568999999999999999999999987789999999999999999999999999999987
Q ss_pred CCC---CCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 254 HES---HLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 254 ~~~---~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
... ...+.......+.+.|.++++||||||||+. ..|+.+...++....||+||||||+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~ 138 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRD 138 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccc
Confidence 643 3466778899999999999999999999987 5788888888877779999999996
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.75 E-value=1.4e-17 Score=170.26 Aligned_cols=136 Identities=23% Similarity=0.346 Sum_probs=99.1
Q ss_pred cccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc---Ccc------
Q 048765 167 DEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV---SET------ 237 (314)
Q Consensus 167 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~---~~~------ 237 (314)
+...+||++..++++..+|.... ...++++|+||||+||||||+.+|+ ++..+|+..+|++. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~ 255 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSS 255 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhccc
Confidence 34579999999999999886543 5689999999999999999999998 67788998888752 111
Q ss_pred -----cc-HHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEE
Q 048765 238 -----FE-EFRVAKAMVEALDGHES-HLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILV 310 (314)
Q Consensus 238 -----~~-~~~~~~~i~~~~~~~~~-~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 310 (314)
.+ ...+...++..+..... .... ...+++.|.++|+||||||||+. ..|+.+........+||+|||
T Consensus 256 ~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIi 329 (1153)
T PLN03210 256 ANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIV 329 (1153)
T ss_pred ccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEE
Confidence 01 12234444444432211 1111 24577888999999999999976 568888766555578999999
Q ss_pred eccC
Q 048765 311 TTRK 314 (314)
Q Consensus 311 TtR~ 314 (314)
|||+
T Consensus 330 TTrd 333 (1153)
T PLN03210 330 ITKD 333 (1153)
T ss_pred EeCc
Confidence 9996
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.22 E-value=2.8e-10 Score=104.30 Aligned_cols=119 Identities=21% Similarity=0.171 Sum_probs=87.9
Q ss_pred cccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHH
Q 048765 167 DEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 167 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 246 (314)
.++.++||+++++.|...|...-. +.....+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 446799999999999999854321 133456789999999999999999985443332345778888877788899999
Q ss_pred HHHHhcCCC--CCCCcHHHHHHHHHHHcc--CceEEEEEeccccC
Q 048765 247 MVEALDGHE--SHLGEFQSLLRHIYESIA--GKSFLLVLDDVWDG 287 (314)
Q Consensus 247 i~~~~~~~~--~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 287 (314)
+++++.... ....+..++...+.+.+. ++..+||||+++..
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l 150 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYL 150 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHh
Confidence 999987522 122345667777777774 46789999999764
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.12 E-value=1.4e-09 Score=98.72 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=84.4
Q ss_pred cccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh-hcC---ceeEEEEcCccccHHH
Q 048765 167 DEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI-RKF---DKILWVCVSETFEEFR 242 (314)
Q Consensus 167 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F---~~~~wv~~~~~~~~~~ 242 (314)
.+..++||+.+++.|..+|...-. +.....+.|+|++|+|||++++.+++...-. ... -..+|+++....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 335799999999999999864221 1334578999999999999999998853211 111 2467888888778888
Q ss_pred HHHHHHHHhc---CCCC-CCCcHHHHHHHHHHHc--cCceEEEEEeccccC
Q 048765 243 VAKAMVEALD---GHES-HLGEFQSLLRHIYESI--AGKSFLLVLDDVWDG 287 (314)
Q Consensus 243 ~~~~i~~~~~---~~~~-~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~ 287 (314)
++..|++++. ...+ ...+..++...+.+.+ .+++++||||+++..
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L 141 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYL 141 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhh
Confidence 9999999984 2211 1223455556666666 356899999999775
No 6
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.12 E-value=3.7e-10 Score=86.85 Aligned_cols=117 Identities=20% Similarity=0.185 Sum_probs=79.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhh---cCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIR---KFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES 271 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 271 (314)
+.+++.|+|.+|+|||++++.+........ .-..++|++++...+...+...|++.++.......+...+.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 457899999999999999999987532110 13456799998888999999999999987655545667777888877
Q ss_pred cc-CceEEEEEeccccC-CccCHHhHHHhhccCCCCceEEEecc
Q 048765 272 IA-GKSFLLVLDDVWDG-NYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 272 L~-~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
+. .+..+||||++... +...++.|.... + ..+.+||++.+
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~ 124 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGT 124 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEES
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEEC
Confidence 74 44569999999765 433334443332 2 55667777643
No 7
>PF05729 NACHT: NACHT domain
Probab=99.05 E-value=1.1e-09 Score=87.55 Aligned_cols=112 Identities=19% Similarity=0.243 Sum_probs=67.5
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhc----CceeEEEEcCccccHH---HHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRK----FDKILWVCVSETFEEF---RVAKAMVEALDGHESHLGEFQSLLRHIY 269 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 269 (314)
+++.|+|.+|+||||+++.++........ +...+|++........ .+...|..+..... ..... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHH---HHH
Confidence 47889999999999999999886544333 4567777765443322 34334444432221 11111 122
Q ss_pred HHc-cCceEEEEEeccccCCcc-------CHHh-HHHhhcc-CCCCceEEEeccC
Q 048765 270 ESI-AGKSFLLVLDDVWDGNYV-------KWEP-FYHCLKN-GLHGSKILVTTRK 314 (314)
Q Consensus 270 ~~L-~~kr~LlVlDdv~~~~~~-------~~~~-l~~~l~~-~~~gs~iivTtR~ 314 (314)
..+ ..++++||||+++..... .+.. +...++. ..++++|+||||+
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 222 678999999999764321 1222 3344443 3678999999985
No 8
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.5e-08 Score=91.03 Aligned_cols=138 Identities=22% Similarity=0.259 Sum_probs=101.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcC-ce-eEEEEcCccccHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF-DK-ILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F-~~-~~wv~~~~~~~~~~~~~~ 246 (314)
+.+.+|+++++++...|...-.+ .....+.|+|.+|+|||+.++.+.. ++.... .. .++|+|....++..++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 44999999999999888764432 2334588999999999999999998 444332 22 799999999999999999
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHc--cCceEEEEEeccccCCccCHHhHHHhhccC-CCCceEEE
Q 048765 247 MVEALDGHESHLGEFQSLLRHIYESI--AGKSFLLVLDDVWDGNYVKWEPFYHCLKNG-LHGSKILV 310 (314)
Q Consensus 247 i~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iiv 310 (314)
|++.++..+.......+....+.+.+ .++.++||||++.......-+.|...+... ..+++|++
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~v 159 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSI 159 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEE
Confidence 99999855555555666777777777 468999999999765322224555555533 33565554
No 9
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.94 E-value=4.1e-09 Score=85.92 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI 223 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~ 223 (314)
.|+||+++++.+...|.... ....+++.|+|.+|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999995222 2557899999999999999999998854433
No 10
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.91 E-value=2.1e-08 Score=78.01 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=71.4
Q ss_pred ccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHh
Q 048765 172 CGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEAL 251 (314)
Q Consensus 172 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~ 251 (314)
.|++..+..+...+... ....+.|+|++|+|||+|++.+++... ..-..++++++.+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 36777788888877542 246788999999999999999988432 222456677665543332221111100
Q ss_pred cCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccC------CCCceEEEecc
Q 048765 252 DGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG------LHGSKILVTTR 313 (314)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~------~~gs~iivTtR 313 (314)
............+..+||+||++.........+...+... ..+..||+||.
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~ 128 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATN 128 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecC
Confidence 0001111223456789999999854222233444444432 35778888875
No 11
>PTZ00202 tuzin; Provisional
Probab=98.88 E-value=9e-08 Score=85.94 Aligned_cols=106 Identities=24% Similarity=0.258 Sum_probs=71.8
Q ss_pred ccccccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHH
Q 048765 164 SFIDEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRV 243 (314)
Q Consensus 164 ~~~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 243 (314)
.+.+.+.|+||+.+...|...|..... ...+++.|.|++|+|||||++.+.... ++ ...+++.. +..++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l----~~-~qL~vNpr---g~eEl 325 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE----GM-PAVFVDVR---GTEDT 325 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC----Cc-eEEEECCC---CHHHH
Confidence 444557899999999999998865332 234688999999999999999987522 22 23333333 67999
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHc-----c-CceEEEEEe
Q 048765 244 AKAMVEALDGHESHLGEFQSLLRHIYESI-----A-GKSFLLVLD 282 (314)
Q Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlD 282 (314)
++.++.+|+..+. ....++...|.+.| . +++.+|||-
T Consensus 326 Lr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 326 LRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9999999997432 22233444443333 3 667777764
No 12
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.82 E-value=7.7e-08 Score=92.83 Aligned_cols=142 Identities=13% Similarity=0.079 Sum_probs=90.9
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhh---hhcC--ceeEEEEcCccccHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEV---IRKF--DKILWVCVSETFEEFR 242 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~~F--~~~~wv~~~~~~~~~~ 242 (314)
+..+.||+++++.|...|...-.+ ...-.++.|+|++|+|||++++.|.....- .... -.+++|++....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 357889999999999888653321 123367889999999999999999874321 1111 1367888887778888
Q ss_pred HHHHHHHHhcCCCC-CCCcHHHHHHHHHHHcc---CceEEEEEeccccCCccCHHhHHHhhcc-CCCCceEEE
Q 048765 243 VAKAMVEALDGHES-HLGEFQSLLRHIYESIA---GKSFLLVLDDVWDGNYVKWEPFYHCLKN-GLHGSKILV 310 (314)
Q Consensus 243 ~~~~i~~~~~~~~~-~~~~~~~~~~~l~~~L~---~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iiv 310 (314)
++..|.+++....+ ......+....+...+. ....+||||+++......-+.|...+.. ...+++|+|
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 99999998854332 22233445555555542 2346999999976432222334444432 234666665
No 13
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.79 E-value=1.6e-07 Score=81.46 Aligned_cols=99 Identities=21% Similarity=0.203 Sum_probs=64.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH----H
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYE----S 271 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~----~ 271 (314)
..++.|+|++|+|||||++.+++.... ..+ ..+|+ +....+..+++..++..++..... .+...+...+.. .
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHH
Confidence 458899999999999999999874321 111 22333 233456778888999888664322 222233333333 2
Q ss_pred c-cCceEEEEEeccccCCccCHHhHHHh
Q 048765 272 I-AGKSFLLVLDDVWDGNYVKWEPFYHC 298 (314)
Q Consensus 272 L-~~kr~LlVlDdv~~~~~~~~~~l~~~ 298 (314)
+ .+++.+||+||+|......++.+...
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l 146 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRML 146 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHH
Confidence 2 67889999999988765556666543
No 14
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.78 E-value=1e-08 Score=86.60 Aligned_cols=59 Identities=27% Similarity=0.253 Sum_probs=40.7
Q ss_pred cccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc
Q 048765 171 ICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET 237 (314)
Q Consensus 171 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 237 (314)
|+||+.+++.|.+++... ....+.|+|+.|+|||+|++.+.+. .+..-...+|+.....
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~ 59 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEE 59 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTB
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccc
Confidence 689999999999988653 2468899999999999999999873 3221124555554443
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=1e-07 Score=96.53 Aligned_cols=131 Identities=20% Similarity=0.274 Sum_probs=84.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC-ccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS-ETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i 247 (314)
+.++-|.. |.+.|... ...+++.|+|++|.||||++..+.. .++.++|+++. .+.++..++..+
T Consensus 14 ~~~~~R~r----l~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 14 HNTVVRER----LLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred cccCcchH----HHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHHH
Confidence 34565654 44444322 3478999999999999999998874 23369999985 555777787888
Q ss_pred HHHhcCCCCC-------------CCcHHHHHHHHHHHcc--CceEEEEEeccccCCccCHHh-HHHhhccCCCCceEEEe
Q 048765 248 VEALDGHESH-------------LGEFQSLLRHIYESIA--GKSFLLVLDDVWDGNYVKWEP-FYHCLKNGLHGSKILVT 311 (314)
Q Consensus 248 ~~~~~~~~~~-------------~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivT 311 (314)
+..+...... ..+...+...+...+. +.+++|||||+...+...... +...++...++.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 8877422111 0122333444433332 678999999997654344443 44444455667788899
Q ss_pred ccC
Q 048765 312 TRK 314 (314)
Q Consensus 312 tR~ 314 (314)
||+
T Consensus 159 sR~ 161 (903)
T PRK04841 159 SRN 161 (903)
T ss_pred eCC
Confidence 985
No 16
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.75 E-value=1.5e-08 Score=86.20 Aligned_cols=91 Identities=19% Similarity=0.092 Sum_probs=61.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc--ccHHHHHHHHHHHhcCCCCCCCc------HHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET--FEEFRVAKAMVEALDGHESHLGE------FQSLLR 266 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~ 266 (314)
+-..+.|+|++|+|||||++.++++.... +|+.++|+.+.+. +++.++++.+...+-....+... ......
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999865444 8999999997666 78889988883322111111111 112223
Q ss_pred HHHHHc-cCceEEEEEecccc
Q 048765 267 HIYESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 267 ~l~~~L-~~kr~LlVlDdv~~ 286 (314)
....+. .+++.++++|++-.
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 333322 58999999999943
No 17
>PF13173 AAA_14: AAA domain
Probab=98.75 E-value=5.6e-08 Score=74.43 Aligned_cols=96 Identities=23% Similarity=0.284 Sum_probs=64.0
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
+++.|.|+.|+|||||+++++.+.. ....++|+++...........+ ..+.+.+...++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPD-----------------LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhh-----------------hHHHHHHhhccCC
Confidence 6889999999999999999987432 3356778877654332111000 1222333334477
Q ss_pred EEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 277 FLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 277 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
.+|+||++... ..|......+-+..+..+|++|+.+
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~ 98 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSS 98 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccc
Confidence 89999999765 5688877777665556789998753
No 18
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.60 E-value=1.3e-06 Score=83.77 Aligned_cols=134 Identities=23% Similarity=0.274 Sum_probs=90.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC-ccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS-ETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i 247 (314)
...+-|.. |++.|... ...+.+.|..|+|.|||||+..+.. . ...-.-+.|.++. .+.++..+++.+
T Consensus 19 ~~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 19 DNYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred ccccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHH
Confidence 44554544 55555443 3589999999999999999998864 1 1233569999984 566888999999
Q ss_pred HHHhcCCCCCC-------------CcHHHHHHHHHHHcc--CceEEEEEeccccCCccCHHh-HHHhhccCCCCceEEEe
Q 048765 248 VEALDGHESHL-------------GEFQSLLRHIYESIA--GKSFLLVLDDVWDGNYVKWEP-FYHCLKNGLHGSKILVT 311 (314)
Q Consensus 248 ~~~~~~~~~~~-------------~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~iivT 311 (314)
+..++...++. .+...+.+.+..-|. .++..+||||..-........ +...+...+++-..|+|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 99987543322 223344444444442 467999999986443344555 55555667888899999
Q ss_pred ccC
Q 048765 312 TRK 314 (314)
Q Consensus 312 tR~ 314 (314)
||+
T Consensus 167 SR~ 169 (894)
T COG2909 167 SRS 169 (894)
T ss_pred ecc
Confidence 995
No 19
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.58 E-value=1.8e-07 Score=83.29 Aligned_cols=89 Identities=18% Similarity=0.101 Sum_probs=59.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc--cHHHHHHHHHHHhcCCC-CCCCcHH-----HHHHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF--EEFRVAKAMVEALDGHE-SHLGEFQ-----SLLRH 267 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~-~~~~~~~-----~~~~~ 267 (314)
-.-..|+|++|+|||||++.+|++.... ||+.++||.+.+.. .+.++++.+...+-... ......+ .....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999976554 89999999998887 66677777652111111 1111111 11122
Q ss_pred HHHH-ccCceEEEEEeccc
Q 048765 268 IYES-IAGKSFLLVLDDVW 285 (314)
Q Consensus 268 l~~~-L~~kr~LlVlDdv~ 285 (314)
-..+ -.++..||++|++.
T Consensus 248 Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHcCCCEEEEEEChH
Confidence 2222 26899999999994
No 20
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=6.9e-07 Score=79.24 Aligned_cols=124 Identities=17% Similarity=0.207 Sum_probs=83.4
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchH----hhhhcCceeEEEEc-CccccHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHE----EVIRKFDKILWVCV-SETFEEFRV 243 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~----~~~~~F~~~~wv~~-~~~~~~~~~ 243 (314)
.+++|.+...+.+..++.... -.....++|+.|+||||+|+.++... ....|+|...|... +.....+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 357898888888998886532 34577899999999999998887621 12356676655442 22223323
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 244 AKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
.+++.+.+... -..+++-++|+|++...+...++.|...+...+.++.+|++|.+
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~ 132 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCEN 132 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 22233322211 12456778888888777667899999999988889999888753
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.48 E-value=9.9e-07 Score=79.06 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=72.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCc-eeEEEEcCccccH--HHHH-
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFD-KILWVCVSETFEE--FRVA- 244 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~--~~~~- 244 (314)
..++|++...+.|..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++..... ..+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46889999999988888543 234578999999999999999876321 11122 2345554432100 0000
Q ss_pred -HHHHHHhcCCC-C---CCCcHHHHHHHHHHHc--cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 245 -KAMVEALDGHE-S---HLGEFQSLLRHIYESI--AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 245 -~~i~~~~~~~~-~---~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
......++... . .....+.+........ .+.+-+|||||+..........|...+......+++|+||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 00000000000 0 0011111111222221 24456899999976543345556666654445567877763
No 22
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.47 E-value=3.3e-07 Score=82.05 Aligned_cols=91 Identities=14% Similarity=0.054 Sum_probs=61.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc--ccHHHHHHHHHHHhcCCCCC-CCcH-----HHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET--FEEFRVAKAMVEALDGHESH-LGEF-----QSLLR 266 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~-~~~~-----~~~~~ 266 (314)
.-..+.|+|++|+|||||++.+++.... +||+..+|+.+.+. ..+.++++.+...+-....+ .... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 3467899999999999999999985443 37999999998865 78888888885433211111 1111 12222
Q ss_pred HHHHHc-cCceEEEEEecccc
Q 048765 267 HIYESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 267 ~l~~~L-~~kr~LlVlDdv~~ 286 (314)
....+. ++++.+|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 222332 68999999999943
No 23
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.46 E-value=8.5e-07 Score=80.71 Aligned_cols=120 Identities=11% Similarity=0.126 Sum_probs=75.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
+.+++.+...+.+...|.. .+.+.++|++|+|||++|+.+++......+|+.+.||.+++..+..+++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~--------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~- 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI--------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGY- 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhc--------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhccc-
Confidence 4577788889999998864 3477889999999999999998755444578889999999888776654322
Q ss_pred HHhcCCCCCCCcH-HHHHHHHHHHc--cCceEEEEEeccccCCcc-CHHhHHHhhc
Q 048765 249 EALDGHESHLGEF-QSLLRHIYESI--AGKSFLLVLDDVWDGNYV-KWEPFYHCLK 300 (314)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~-~~~~l~~~l~ 300 (314)
........-. ....+.+.... .+++++||||++...+.. .+..+...+.
T Consensus 246 ---rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 ---RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ---CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1110000000 11112222222 246899999999765422 2344444443
No 24
>PRK06893 DNA replication initiation factor; Validated
Probab=98.46 E-value=4.5e-07 Score=76.68 Aligned_cols=89 Identities=19% Similarity=0.318 Sum_probs=52.0
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
..+.|+|++|+|||+|++.+++. .......+.|+++... ..... .+.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-cC
Confidence 56899999999999999999984 3333445677766421 00000 1111122 23
Q ss_pred EEEEEeccccCC-ccCHH-hHHHhhccC-CCCceEEEec
Q 048765 277 FLLVLDDVWDGN-YVKWE-PFYHCLKNG-LHGSKILVTT 312 (314)
Q Consensus 277 ~LlVlDdv~~~~-~~~~~-~l~~~l~~~-~~gs~iivTt 312 (314)
-+|+|||+|... ...|+ .+...+... ..|+.+||+|
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illit 131 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLIS 131 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 599999998742 23565 345545422 3466665544
No 25
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.44 E-value=2e-06 Score=82.60 Aligned_cols=123 Identities=16% Similarity=0.181 Sum_probs=76.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh-------------------cCcee
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR-------------------KFDKI 229 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~ 229 (314)
++++|.+.-++.|..++.... -...+.++|..|+||||+++.+.+...-.. .|.-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 569999999999999886532 244567999999999999988765321111 11112
Q ss_pred EEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 230 LWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 230 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
++++.+..... .++.++++.+... ..++.-++|||++...+...++.|+..|..-..+.++
T Consensus 91 iEIDAas~rgV------------------DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~F 152 (830)
T PRK07003 91 VEMDAASNRGV------------------DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKF 152 (830)
T ss_pred EEecccccccH------------------HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEE
Confidence 22222111111 1122222222211 2345668999999887766788888888766667888
Q ss_pred EEeccC
Q 048765 309 LVTTRK 314 (314)
Q Consensus 309 ivTtR~ 314 (314)
|++|.+
T Consensus 153 ILaTtd 158 (830)
T PRK07003 153 ILATTD 158 (830)
T ss_pred EEEECC
Confidence 888764
No 26
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=1.1e-06 Score=74.07 Aligned_cols=106 Identities=22% Similarity=0.259 Sum_probs=61.6
Q ss_pred hhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC
Q 048765 175 VGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH 254 (314)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 254 (314)
...++.+..++.. .....+.|+|+.|+|||+||+.+++. ........++++++...... .
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~~~~---~--------- 82 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELAQAD---P--------- 82 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHHHhH---H---------
Confidence 4456666666532 33568899999999999999999874 33334456667654322100 0
Q ss_pred CCCCCcHHHHHHHHHHHccCceEEEEEeccccCCcc-C-HHhHHHhhccC-CCCceEEEecc
Q 048765 255 ESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYV-K-WEPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 255 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~-~-~~~l~~~l~~~-~~gs~iivTtR 313 (314)
.+...+.+ .-+|||||+...... . .+.+...+... ..+..+|+||+
T Consensus 83 ------------~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~ 131 (226)
T TIGR03420 83 ------------EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGR 131 (226)
T ss_pred ------------HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 11112222 238999999765422 2 33455554421 23447888875
No 27
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.43 E-value=7.9e-07 Score=78.54 Aligned_cols=90 Identities=24% Similarity=0.397 Sum_probs=56.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-Hc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYE-SI 272 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~L 272 (314)
.++.-..+||++|+||||||+.+.. .....|. .+|-..+ ...+++...+.-++ ..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~-----------------gvkdlr~i~e~a~~~~~ 101 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTS-----------------GVKDLREIIEEARKNRL 101 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----Eeccccc-----------------cHHHHHHHHHHHHHHHh
Confidence 4577888999999999999999977 4444442 2222111 12233333333322 23
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEE
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILV 310 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 310 (314)
.+++.+|++|.|...+...-+.+ ||...+|.-|+|
T Consensus 102 ~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilI 136 (436)
T COG2256 102 LGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILI 136 (436)
T ss_pred cCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEE
Confidence 68999999999987654443444 455556775555
No 28
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.3e-06 Score=76.37 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=73.0
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
++++|.+.-++.+...+.... -...+.++|+.|+||||+|+.+.....-...+... .+........+.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcCCC
Confidence 468999998888888886532 24567899999999999999987632100000000 0000000000000000
Q ss_pred HHhc-CCC---CCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EALD-GHE---SHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~-~~~---~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
-.+. ... ....+..++.+.+... ..+++-++|||++.......++.+...+...+...++|++|.
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 0000 000 0111122222222111 134567999999987765567788888876666777777764
No 29
>PRK08116 hypothetical protein; Validated
Probab=98.41 E-value=1.9e-06 Score=74.40 Aligned_cols=102 Identities=24% Similarity=0.289 Sum_probs=60.3
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
..+.++|..|+|||+||..+++. .......+++++ ..+++..+...+.... ..+.. .+.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~- 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNA- 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCC-
Confidence 35789999999999999999984 333344556664 4445555555543211 11111 223333333
Q ss_pred EEEEEeccccCCccCHHh--HHHhhccC-CCCceEEEecc
Q 048765 277 FLLVLDDVWDGNYVKWEP--FYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 277 ~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR 313 (314)
=||||||+......+|.. |...+... .+|..+|+||.
T Consensus 180 dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 180 DLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 389999996543345544 44444322 45667999984
No 30
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.38 E-value=1.7e-06 Score=79.62 Aligned_cols=109 Identities=18% Similarity=0.269 Sum_probs=62.6
Q ss_pred cccccchhhHHH---HHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
++++|.+..+.. |..++.. .....+.++|++|+||||||+.+++. ....| ..++.+. ...+-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~---~~l~a~~--~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF---EALSAVT--SGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEeccc--ccHHHHH
Confidence 458887766544 6666643 23557788999999999999999873 32233 1222221 1111111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEE
Q 048765 246 AMVEALDGHESHLGEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILV 310 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 310 (314)
. +.+...... .+++.+|+||+++..+....+.|...+.. |..+++
T Consensus 79 ~-----------------ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI 124 (413)
T PRK13342 79 E-----------------VIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLI 124 (413)
T ss_pred H-----------------HHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEE
Confidence 2 222222211 46788999999987654445556555543 444444
No 31
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=2.8e-06 Score=76.38 Aligned_cols=142 Identities=17% Similarity=0.089 Sum_probs=93.6
Q ss_pred cccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHH
Q 048765 167 DEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 167 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 246 (314)
.+..++||+.+++.+.+|+...-+ .....-+.|.|-+|.|||.+...++.+..-...=-+++++++..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 446799999999999999876433 356778899999999999999999885432222135688888776677888888
Q ss_pred HHHHhc-CCCCCCCcHHHHHHHHHHHccC--ceEEEEEeccccCCccCHHhHHHhhcc-CCCCceEEEe
Q 048765 247 MVEALD-GHESHLGEFQSLLRHIYESIAG--KSFLLVLDDVWDGNYVKWEPFYHCLKN-GLHGSKILVT 311 (314)
Q Consensus 247 i~~~~~-~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivT 311 (314)
|...+- .......+ .+....+..+..+ ..+|+|+|..+......-..|...|.+ ..++|++|+.
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLi 293 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILI 293 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeee
Confidence 888772 21111222 4455666666633 369999999976432222334444432 2456666653
No 32
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=3.5e-06 Score=79.34 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=75.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhh-------------------hhcCcee
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEV-------------------IRKFDKI 229 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-------------------~~~F~~~ 229 (314)
.+++|.+..+..|...+.... -...+.++|+.|+||||+|+.++....- ...|.-.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999988888886532 2355778999999999999998762110 0011122
Q ss_pred EEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 230 LWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 230 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
++++....... .+.+.+.+.+... ..+++-++|||++...+...++.|...+......+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22222111111 1223333333221 2466779999999877666788888888876667767
Q ss_pred EEec
Q 048765 309 LVTT 312 (314)
Q Consensus 309 ivTt 312 (314)
|++|
T Consensus 153 IL~T 156 (546)
T PRK14957 153 ILAT 156 (546)
T ss_pred EEEE
Confidence 6655
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=4.2e-06 Score=74.46 Aligned_cols=123 Identities=12% Similarity=0.099 Sum_probs=70.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCc-eeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFD-KILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 247 (314)
.+++|.+..+..|..++... +...+.++|++|+||||+|+.+++... ...|. .++-++.+...+.. ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 46888888888887776542 234577999999999999999877321 12222 12222333322222 22222
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 248 VEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
+..+...... .-.++.-+++||++..........|...+......+++|+++
T Consensus 85 i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 85 IKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred HHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEe
Confidence 2222110000 002456799999998765555566766665444566777765
No 34
>PRK04195 replication factor C large subunit; Provisional
Probab=98.35 E-value=3.8e-06 Score=78.96 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=72.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
++++|.+...+.|..|+.....+ ...+.+.|+|++|+||||+|+.+++... |+ .+-++.+...+.. .+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHHHHH
Confidence 56999999999999998754321 2367889999999999999999987431 22 3334555433222 223333
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCc----cCHHhHHHhhccCCCCceEEEec
Q 048765 249 EALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNY----VKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~iivTt 312 (314)
....... .....++-+||||+++.... ..+..|...+.. .+..||+|+
T Consensus 86 ~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~ 137 (482)
T PRK04195 86 GEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTA 137 (482)
T ss_pred HHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEec
Confidence 2221110 01113678999999976432 235566666653 234466665
No 35
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.32 E-value=6.4e-06 Score=79.35 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=83.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcC---ceeEEEEc--Cc-cccHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF---DKILWVCV--SE-TFEEFR 242 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F---~~~~wv~~--~~-~~~~~~ 242 (314)
+.++|++..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+ .. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 45889998888888777432 34578999999999999999998754332222 12234433 21 112222
Q ss_pred HHHH---------------HHHHhcCCC----------------CCCCcH-HHHHHHHHHHccCceEEEEEeccccCCcc
Q 048765 243 VAKA---------------MVEALDGHE----------------SHLGEF-QSLLRHIYESIAGKSFLLVLDDVWDGNYV 290 (314)
Q Consensus 243 ~~~~---------------i~~~~~~~~----------------~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~~~~ 290 (314)
+... .+...+... .+...+ ...+..+...++.++++++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 1111 111111100 011122 24567888888999999998888877767
Q ss_pred CHHhHHHhhccCCCCceEEE
Q 048765 291 KWEPFYHCLKNGLHGSKILV 310 (314)
Q Consensus 291 ~~~~l~~~l~~~~~gs~iiv 310 (314)
.|+.+...+....+...|++
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI 327 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLI 327 (615)
T ss_pred cchhhhhhcccCccceEEEE
Confidence 78888877776665655555
No 36
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=4.4e-06 Score=79.34 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=75.6
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
++++|.+.....|..++.... -...+.++|+.|+||||+|+.+++... |.-++... +++.=...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~Ln------C~~~~~~~-pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLN------CETGVTST-PCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhC------CCcCCCCC-CCccCHHHHHHh
Confidence 569999999999999887532 246778999999999999998866321 11111100 000000000010
Q ss_pred HHhcC-----C---CCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EALDG-----H---ESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~-----~---~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
..-.. . .....+++++...+... ..++.-++|||++...+....+.|...+.....+.++|++|.
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 00000 0 00111222233222211 245677999999987765677788888876666777887764
No 37
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.32 E-value=1.5e-06 Score=75.79 Aligned_cols=95 Identities=21% Similarity=0.257 Sum_probs=59.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
..+.-+.+||++|+||||||+.+.+..+... ..+|.+|-...-..-.+.|.++-.. ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 4577888999999999999999987433222 5567666543333333333333211 01246
Q ss_pred CceEEEEEeccccCCccCHHhHHHhhccCCCCceEEE
Q 048765 274 GKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILV 310 (314)
Q Consensus 274 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 310 (314)
++|.+|++|.|...+...-+ .+||.-.+|+-++|
T Consensus 221 krkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lI 254 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQD---TFLPHVENGDITLI 254 (554)
T ss_pred cceeEEEeHHhhhhhhhhhh---cccceeccCceEEE
Confidence 78999999999766533322 24666667874444
No 38
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.31 E-value=5e-06 Score=73.88 Aligned_cols=118 Identities=16% Similarity=0.183 Sum_probs=70.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.+++|.+...+.+..++... ....++.++|++|+|||++|+.+++. ... ....++.+. ... ...+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~--~~~---~~~~i~~~~-~~~-~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNE--VGA---EVLFVNGSD-CRI-DFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHH--hCc---cceEeccCc-ccH-HHHHHHH
Confidence 56899999999999888642 23567778999999999999999773 221 233445444 221 1111211
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccC-CccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDG-NYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
..+... . .+.+.+-+||||++... .......|...+.....++++|+||.
T Consensus 89 ~~~~~~-------------~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 89 TRFAST-------------V--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred HHHHHh-------------h--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 111000 0 01234568999999755 22223445555655556778888874
No 39
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=7.4e-07 Score=83.51 Aligned_cols=135 Identities=20% Similarity=0.219 Sum_probs=73.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHH--
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKA-- 246 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~-- 246 (314)
.+++|.+...+.|..++.... -...+.++|++|+||||+|+.++....-.+.+...+|.+-+- ..+...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc----~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC----LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh----HHHhcCCC
Confidence 468998888888888876532 245678999999999999999877432112222222222110 000000
Q ss_pred -HHHHhcCC-CCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 247 -MVEALDGH-ESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 247 -i~~~~~~~-~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
-...+... .....+.+++...+.. -+.+++-++|||+++......++.|...+........+|++|
T Consensus 85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t 153 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILAT 153 (504)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 00000000 0011122222222221 123567799999998765556788888887654555555555
No 40
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.30 E-value=9.4e-06 Score=72.13 Aligned_cols=122 Identities=14% Similarity=0.100 Sum_probs=69.4
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCc-eeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFD-KILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 247 (314)
.+++|++..++.+..++... ..+.+.++|++|+||||+++.+++... ...+. ..+-++.+...... .....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWRENFLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccccceEEeccccccchH-HHHHH
Confidence 45889999999999888643 234579999999999999999977321 11121 11112222222221 11111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 248 VEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
+..+....+ .....+-+|++|++..........|...+......+++|+++
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEe
Confidence 111111000 001345689999987654344556777776555556777765
No 41
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=5.8e-06 Score=80.89 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=75.4
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhc-------------------Ccee
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRK-------------------FDKI 229 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-------------------F~~~ 229 (314)
.+++|.+.-+..|.+++.... -...+.++|+.|+||||+|+.++....-... |.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 468999998988888886532 2345579999999999999998763211000 0001
Q ss_pred EEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 230 LWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 230 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
++++.... ....+++.+...+... ..+++-++|||++........+.|+..+..-....++
T Consensus 91 iEidAas~------------------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASR------------------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccc------------------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 11111100 1112233333333221 2467789999999887766788888888765566777
Q ss_pred EEecc
Q 048765 309 LVTTR 313 (314)
Q Consensus 309 ivTtR 313 (314)
|++|.
T Consensus 153 ILaTT 157 (944)
T PRK14949 153 LLATT 157 (944)
T ss_pred EEECC
Confidence 77663
No 42
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=8.4e-06 Score=77.32 Aligned_cols=122 Identities=18% Similarity=0.223 Sum_probs=75.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh------------------------h
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI------------------------R 224 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~------------------------~ 224 (314)
.+++|.+.-++.|.+++.... -...+.++|..|+||||+|+.+....--. +
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 469999999999999887543 24566889999999999998886522100 0
Q ss_pred cCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCC
Q 048765 225 KFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL 303 (314)
Q Consensus 225 ~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 303 (314)
.|.-.++++.+.... .++++++.+.+... ..++.-++|||++...+...++.|+..|..-.
T Consensus 91 ~hpDviEIdAas~~g------------------VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 91 RFVDYIEMDAASNRG------------------VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred CCCcceEecccccCC------------------HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 000111221111111 12223333322211 24567799999999887677888888887655
Q ss_pred CCceEEEecc
Q 048765 304 HGSKILVTTR 313 (314)
Q Consensus 304 ~gs~iivTtR 313 (314)
.+.++|++|.
T Consensus 153 ~~v~FILaTt 162 (700)
T PRK12323 153 EHVKFILATT 162 (700)
T ss_pred CCceEEEEeC
Confidence 5667666664
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.27 E-value=6.7e-06 Score=62.88 Aligned_cols=95 Identities=20% Similarity=0.107 Sum_probs=51.2
Q ss_pred EEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC-ceE
Q 048765 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG-KSF 277 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~-kr~ 277 (314)
|.|+|++|+|||++|+.+++.. .. ..+.++.+...+. ........+...+.+.-.. ++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l--~~---~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL--GF---PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT--TS---EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhc--cc---ccccccccccccc---------------cccccccccccccccccccccce
Confidence 5689999999999999998843 21 2355554432210 0011111222222222122 479
Q ss_pred EEEEeccccCCccC-----------HHhHHHhhccCC---CCceEEEecc
Q 048765 278 LLVLDDVWDGNYVK-----------WEPFYHCLKNGL---HGSKILVTTR 313 (314)
Q Consensus 278 LlVlDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~iivTtR 313 (314)
+|+|||+....... ...+...+.... ++..||.||.
T Consensus 61 vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn 110 (132)
T PF00004_consen 61 VLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTN 110 (132)
T ss_dssp EEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEES
T ss_pred eeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeC
Confidence 99999997653333 344555554332 2345555553
No 44
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.23 E-value=9.3e-06 Score=71.35 Aligned_cols=112 Identities=19% Similarity=0.194 Sum_probs=81.5
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
++.+.+|+.++..+...+...++ .-+.++.|+|-.|+|||.+++.+++.. . -.-+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHH
Confidence 46788999999999998876552 345666899999999999999998844 2 235899999999999999999
Q ss_pred HHHhcCCCCCC-------CcHHHHHHHHHH--Hc--cCceEEEEEeccccC
Q 048765 248 VEALDGHESHL-------GEFQSLLRHIYE--SI--AGKSFLLVLDDVWDG 287 (314)
Q Consensus 248 ~~~~~~~~~~~-------~~~~~~~~~l~~--~L--~~kr~LlVlDdv~~~ 287 (314)
+......+.+. .+..+.+..+.+ .. .++.++||||++...
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l 127 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL 127 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh
Confidence 99985322211 122233333333 12 256899999999654
No 45
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.2e-05 Score=75.58 Aligned_cols=121 Identities=18% Similarity=0.227 Sum_probs=75.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh-------------------cCcee
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR-------------------KFDKI 229 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~ 229 (314)
++++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+....--.. .|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 469999999999999986532 234678999999999999988865221000 11112
Q ss_pred EEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 230 LWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 230 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
+.++.+.....+ +.+++.+.+... ..++.-++|||++........+.|...+......+++
T Consensus 91 ~eidaas~~~v~------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~f 152 (509)
T PRK14958 91 FEVDAASRTKVE------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKF 152 (509)
T ss_pred EEEcccccCCHH------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEE
Confidence 222222222222 222222222211 1456679999999887666778888888776667777
Q ss_pred EEec
Q 048765 309 LVTT 312 (314)
Q Consensus 309 ivTt 312 (314)
|++|
T Consensus 153 Ilat 156 (509)
T PRK14958 153 ILAT 156 (509)
T ss_pred EEEE
Confidence 7765
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.22 E-value=4.1e-06 Score=69.11 Aligned_cols=55 Identities=29% Similarity=0.398 Sum_probs=34.6
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcC
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF 226 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F 226 (314)
.+|+|.+.-+..+.-++.... .....+..+.+||++|+||||||+-+.+ +....|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~-~r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAK-KRGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHH-CTTS---EEEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred HHccCcHHHHhhhHHHHHHHH-hcCCCcceEEEECCCccchhHHHHHHHh--ccCCCe
Confidence 579999888777655443211 1124578899999999999999999988 444444
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=1.2e-05 Score=76.83 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=72.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhc--CceeEEEEcCccccHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRK--FDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~~~~~~~~~ 246 (314)
++++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+....--... ......-.|....+. +.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C----~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC----RD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH----HH
Confidence 468998888888888887543 2456789999999999999988542110000 000000001111011 11
Q ss_pred HHHHhc-----CCC---CCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 247 MVEALD-----GHE---SHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 247 i~~~~~-----~~~---~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
|...-. ... ....+.+++.+.+... ..++.-++|||++...+...++.|...+.......++|++|
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 100000 000 0011122222221111 13456689999998877667888888887666666676665
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.20 E-value=3.6e-06 Score=74.39 Aligned_cols=50 Identities=30% Similarity=0.396 Sum_probs=38.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+|+|++..++.|..++...... ......+.++|++|+|||+||+.+++.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~-~~~~~~~ll~Gp~G~GKT~la~~ia~~ 53 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR-QEALDHLLLYGPPGLGKTTLAHIIANE 53 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999998888632211 133556789999999999999999873
No 49
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.20 E-value=1.6e-05 Score=66.54 Aligned_cols=121 Identities=20% Similarity=0.251 Sum_probs=72.4
Q ss_pred ccccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 166 IDEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 166 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
...+.++|.+.+.+.|++--..=- .+.....+.++|..|+|||+|++.+.+...-++ .--|.+.+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k--------- 88 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK--------- 88 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH---------
Confidence 444679999998888776532211 124467788999999999999999987322211 11222222
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEecccc-CCccCHHhHHHhhccC---CCCceEEEecc
Q 048765 246 AMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWD-GNYVKWEPFYHCLKNG---LHGSKILVTTR 313 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtR 313 (314)
....++..+.+.++. ...||+|++||+.= .....+..|+..|.-+ .+..-+|..|-
T Consensus 89 ----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 89 ----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred ----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 112333444444442 45799999999952 2234577788777632 34444454443
No 50
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.19 E-value=4.9e-06 Score=81.09 Aligned_cols=109 Identities=21% Similarity=0.285 Sum_probs=62.1
Q ss_pred cccccchhhHH---HHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKN---ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
++++|.+..+. .|...+.. .....+.++|++|+||||||+.+++ ....+|. .++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~--~~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIAN--HTRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHH--HhcCcce---eehhhh-hhh-----
Confidence 46888877663 45555543 2355678999999999999999987 3334441 111110 000
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHc--cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEE
Q 048765 246 AMVEALDGHESHLGEFQSLLRHIYESI--AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILV 310 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 310 (314)
.+...........+ .+++.+|||||++..+...++.|...+. .|+.+++
T Consensus 91 -------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI 141 (725)
T PRK13341 91 -------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLI 141 (725)
T ss_pred -------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEE
Confidence 11122222222222 2467899999998765445556655443 3554554
No 51
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.18 E-value=1.1e-05 Score=61.93 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=47.4
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc-
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK- 275 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k- 275 (314)
..+.|+|++|+||||+++.++.. .......+++++.+........... ...... .............+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE--LGPPGGGVIYIDGEDILEEVLDQLL-LIIVGG-KKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc--cCCCCCCEEEECCEEccccCHHHHH-hhhhhc-cCCCCCHHHHHHHHHHHHHhcC
Confidence 57889999999999999999773 2222224666665543322221111 001111 111112222233444444433
Q ss_pred eEEEEEeccccCC
Q 048765 276 SFLLVLDDVWDGN 288 (314)
Q Consensus 276 r~LlVlDdv~~~~ 288 (314)
..+|++|++....
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4999999997763
No 52
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2e-05 Score=74.52 Aligned_cols=121 Identities=19% Similarity=0.244 Sum_probs=72.6
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh-------------------cCcee
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR-------------------KFDKI 229 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~ 229 (314)
++++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+....--.. .|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999998888888886532 234567999999999999998865221000 01111
Q ss_pred EEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 230 LWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 230 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
++++.+..... .+++++...+.. -..+++-++|||++........+.|...+......+.+
T Consensus 91 ~ei~~~~~~~v------------------d~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNTQV------------------DAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccCCH------------------HHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 22222111111 112222222211 12456779999999877655677888888766566667
Q ss_pred EEec
Q 048765 309 LVTT 312 (314)
Q Consensus 309 ivTt 312 (314)
|++|
T Consensus 153 IL~t 156 (527)
T PRK14969 153 ILAT 156 (527)
T ss_pred EEEe
Confidence 6665
No 53
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.17 E-value=2.1e-05 Score=67.90 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=79.4
Q ss_pred cccccc---hhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh----cCceeEEEEcCccccHH
Q 048765 169 EEICGR---VGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR----KFDKILWVCVSETFEEF 241 (314)
Q Consensus 169 ~~~vgr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~ 241 (314)
+..+|. .+-++.|.+.|..... .....+.|||..|.|||++++++....-... .--+++.|.+...++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 446664 3345566666654432 5667899999999999999999976432111 11257888899999999
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc-CceEEEEEecccc
Q 048765 242 RVAKAMVEALDGHESHLGEFQSLLRHIYESIA-GKSFLLVLDDVWD 286 (314)
Q Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~ 286 (314)
.+...|+.+++...........+...+...|+ -+--+||||++.+
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 99999999998775555555544444444442 3456899999965
No 54
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2.1e-05 Score=73.67 Aligned_cols=139 Identities=13% Similarity=0.151 Sum_probs=74.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCc-eeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFD-KILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 247 (314)
.+++|.+.-+..|...+.... -...+.++|+.|+||||+|+.++....-...+. .-.+..|....+...+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 468999888888877665432 246788999999999999999976321110000 00000111110111100000
Q ss_pred HH---HhcC-CCCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 248 VE---ALDG-HESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 248 ~~---~~~~-~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
.. .+.. ......+++++.+.... -+.+++-++|||+++......++.|...+....+.+.+|++|
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 00 0000 00111222333322221 134677899999998876667888988888666666666554
No 55
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.1e-05 Score=73.19 Aligned_cols=121 Identities=16% Similarity=0.174 Sum_probs=74.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh------------------hh-hcCcee
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE------------------VI-RKFDKI 229 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~------------------~~-~~F~~~ 229 (314)
.+++|.+.-++.|...+.... -...+.++|+.|+||||+|+.++.... +. ..+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468998888888877775432 235788999999999999988865210 00 011122
Q ss_pred EEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 230 LWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 230 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
+.++.+...+.++ .+++.+..... +.++.-++|||++........+.|...+....+.+++
T Consensus 88 ~eidaas~~~vdd------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3333333222222 22222222111 2456778999999876656678888888876777777
Q ss_pred EEec
Q 048765 309 LVTT 312 (314)
Q Consensus 309 ivTt 312 (314)
|++|
T Consensus 150 Ilat 153 (491)
T PRK14964 150 ILAT 153 (491)
T ss_pred EEEe
Confidence 7766
No 56
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.16 E-value=2e-05 Score=75.48 Aligned_cols=122 Identities=17% Similarity=0.230 Sum_probs=72.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh-------------------cCcee
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR-------------------KFDKI 229 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~ 229 (314)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+.....-.. .|.-.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 569999999999999987532 245788999999999999998865211000 01001
Q ss_pred EEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 230 LWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 230 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
+.++.+..... .++++++...... ..+++-++|||++...+....+.|...+.......++
T Consensus 91 lEidaAs~~gV------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~f 152 (709)
T PRK08691 91 LEIDAASNTGI------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (709)
T ss_pred EEEeccccCCH------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEE
Confidence 12221111111 1222222222111 2356679999999776544566777777655556677
Q ss_pred EEecc
Q 048765 309 LVTTR 313 (314)
Q Consensus 309 ivTtR 313 (314)
|++|.
T Consensus 153 ILaTt 157 (709)
T PRK08691 153 ILATT 157 (709)
T ss_pred EEEeC
Confidence 77764
No 57
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.15 E-value=3.1e-05 Score=64.96 Aligned_cols=125 Identities=16% Similarity=0.255 Sum_probs=68.1
Q ss_pred ccccc-hhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 170 EICGR-VGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 170 ~~vgr-~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.++|- ....-.....+..... .....+.|+|..|+|||+|.+.+++...-...-..++|+ +..++...+.
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~ 80 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFA 80 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHH
Confidence 34564 2333344444443321 345568899999999999999999843221112245565 5556666666
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCcc-CHHh-HHHhhcc-CCCCceEEEecc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYV-KWEP-FYHCLKN-GLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~-~~~~-l~~~l~~-~~~gs~iivTtR 313 (314)
..+.. ... ..+...+. .-=+|+|||+...... .|.. +...+.. ...|-+||+|+.
T Consensus 81 ~~~~~-----~~~----~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~ 138 (219)
T PF00308_consen 81 DALRD-----GEI----EEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSD 138 (219)
T ss_dssp HHHHT-----TSH----HHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEES
T ss_pred HHHHc-----ccc----hhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence 66643 112 23333444 3458899999764221 2332 3333331 134668999885
No 58
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=1.7e-05 Score=76.05 Aligned_cols=133 Identities=18% Similarity=0.232 Sum_probs=76.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.+++|.+.-+..|...+.... -...+.++|+.|+||||+|+.++...--...+.. -.|... ...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHH
Confidence 569999988888888886532 2345679999999999999988763211000000 001111 1111111
Q ss_pred HH-------hcCC-CCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EA-------LDGH-ESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~-------~~~~-~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.. +... .....+++++.+.+... ..+++-++|||++...+....+.|...+..-....++|++|.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 10 0000 01112233333333322 256778999999988776778888888876666666776664
No 59
>PRK08727 hypothetical protein; Validated
Probab=98.14 E-value=2e-05 Score=66.81 Aligned_cols=90 Identities=20% Similarity=0.235 Sum_probs=51.4
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
..+.|+|..|+|||+|++.+++. .......+.|+++.+ ....+.. ... .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~~--------------~~~----~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLRD--------------ALE----AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHHH--------------HHH----HH-hcC
Confidence 45999999999999999999873 333344566775432 1111111 111 11 123
Q ss_pred EEEEEeccccCC-ccCHHh-HHHhhccC-CCCceEEEecc
Q 048765 277 FLLVLDDVWDGN-YVKWEP-FYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 277 ~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~iivTtR 313 (314)
-+|||||+.... ...|.. +...+... .+|..||+||+
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~ 134 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTAR 134 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 589999996432 123433 44333221 34666999886
No 60
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.2e-05 Score=73.10 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=35.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++++|.+.....|...+.... -...+.++|++|+||||+|+.++.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~ 58 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAK 58 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence 568998877777777765432 235678999999999999999876
No 61
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=2.4e-05 Score=71.64 Aligned_cols=135 Identities=15% Similarity=0.156 Sum_probs=73.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEE-----EcCccccHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWV-----CVSETFEEFRV 243 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv-----~~~~~~~~~~~ 243 (314)
.+++|.+.-...|..++.... -...+.++|+.|+||||+|+.+.....-...+....|. .+....+..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~-- 88 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR-- 88 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH--
Confidence 468998888888888876432 23457899999999999999886632111111101111 111111111
Q ss_pred HHHHHHHhcCC-----C---CCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 244 AKAMVEALDGH-----E---SHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 244 ~~~i~~~~~~~-----~---~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
.+......+ . ....++.++.+.+.. -..+++-++|+|++.......++.|..++....+.+.+|++|
T Consensus 89 --~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 89 --DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred --HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 111000000 0 001122222222211 124566789999998766557888888887666677766665
No 62
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.12 E-value=3.6e-05 Score=69.49 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=71.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh--------------------hcCce
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI--------------------RKFDK 228 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~ 228 (314)
.+++|.+..++.|.+++.... -...+.++|++|+|||++|+.+.....-. .||+.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 468999999999999886432 34577899999999999998886531100 12222
Q ss_pred eEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCce
Q 048765 229 ILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSK 307 (314)
Q Consensus 229 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 307 (314)
.+++.+...... +...+.+.+... ..+++-++|+|++........+.+...+......+.
T Consensus 89 -~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222221111111 112222222111 234566899999876544456777777765555666
Q ss_pred EEEecc
Q 048765 308 ILVTTR 313 (314)
Q Consensus 308 iivTtR 313 (314)
+|++|.
T Consensus 150 lIl~~~ 155 (355)
T TIGR02397 150 FILATT 155 (355)
T ss_pred EEEEeC
Confidence 666653
No 63
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=1.2e-05 Score=74.16 Aligned_cols=136 Identities=14% Similarity=0.150 Sum_probs=75.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.++....-..... ...+........+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~---~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIG---NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccC---ccccCCCcHHHHHHccCC
Confidence 468999888888888886532 234678999999999999999976321100000 001111111111111111
Q ss_pred HHhcC-C---CCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EALDG-H---ESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~~~~-~---~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
..+.. . .....+.+++.+.+... ..++.-++|||++.......++.|...+........+|++|
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaT 158 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILAT 158 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeec
Confidence 00000 0 01122333444443322 24566799999998877667888888776544455555555
No 64
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=3e-05 Score=73.48 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=73.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|.+..++.|...+.... -.+.+.++|+.|+||||+|+.+.... .|.-|.... .++.-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L------~C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAI------NCLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHh------cCCCCCCCC-CCcccHHHHHHH
Confidence 468999999999998886532 24578899999999999999886521 111121110 001101111111
Q ss_pred HHhcCC-----C---CCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EALDGH-----E---SHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~~~~~-----~---~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
...... . ....+.+.+...+... ..+++-++|||++.......++.|...+...+....+|++|
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 110000 0 0111223333222211 12345579999998766567788888887655566666555
No 65
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.08 E-value=9.9e-06 Score=72.37 Aligned_cols=50 Identities=28% Similarity=0.399 Sum_probs=38.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+|+|++...+.+...+..... .......+.++|++|+|||+||+.+++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 5799999999988877753211 1134567889999999999999999873
No 66
>PRK12377 putative replication protein; Provisional
Probab=98.08 E-value=1.2e-05 Score=68.39 Aligned_cols=101 Identities=22% Similarity=0.188 Sum_probs=57.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
...+.++|.+|+|||+||..+++. .....-.++++++. +++..+-..... ...... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cC
Confidence 357899999999999999999984 33444445666543 444444443321 111111 22222 35
Q ss_pred eEEEEEeccccCCccCHHh--HHHhhccC-CCCceEEEecc
Q 048765 276 SFLLVLDDVWDGNYVKWEP--FYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR 313 (314)
--||||||+.......|.. |...+... .+.-.+||||-
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 6799999995543344543 44444422 22234777763
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.06 E-value=7.6e-05 Score=61.07 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=30.7
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.+.+-++|+|++........+.|...+......+.+|++|.
T Consensus 94 ~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 35677999999987665567888888876666667777765
No 68
>PRK05642 DNA replication initiation factor; Validated
Probab=98.05 E-value=4.1e-05 Score=64.94 Aligned_cols=91 Identities=20% Similarity=0.372 Sum_probs=52.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
...+.|+|..|+|||+|++.+++. ....-..++|++..+ +... . ..+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~~------~~~~--------------~----~~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLAE------LLDR--------------G----PELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHHH------HHhh--------------h----HHHHHhhhhC
Confidence 367899999999999999999773 333234566776532 2111 0 1122222222
Q ss_pred eEEEEEeccccCC-ccCHHh-HHHhhcc-CCCCceEEEecc
Q 048765 276 SFLLVLDDVWDGN-YVKWEP-FYHCLKN-GLHGSKILVTTR 313 (314)
Q Consensus 276 r~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~iivTtR 313 (314)
=+|+|||+.... ...|.. +...+.. ..+|..||+||.
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 278899996431 134544 5554432 234667888875
No 69
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=4.9e-05 Score=69.16 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred cccccchhhHHHHHHHhhccCcC----CCCCeEEEEEEccCCCChHHHHHHhhchHhh-------------------hhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSE----QQKGLHIISIVGMGGIGKTTLAQLACNHEEV-------------------IRK 225 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-------------------~~~ 225 (314)
++++|.+.-++.|...+..+... ...-...+.++|+.|+|||++|+.+....-- ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45889888888888888764310 0013466889999999999999888552100 011
Q ss_pred CceeEEEEcC-ccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCC
Q 048765 226 FDKILWVCVS-ETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL 303 (314)
Q Consensus 226 F~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 303 (314)
.|. .++... .... ..+++++.+.+.. -..+++-++|||++...+....+.|...+....
T Consensus 85 pD~-~~i~~~~~~i~------------------i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PDV-RVVAPEGLSIG------------------VDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CCE-EEeccccccCC------------------HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 111 111110 0011 1112222222211 113556689999998876666677888887666
Q ss_pred CCceEEEecc
Q 048765 304 HGSKILVTTR 313 (314)
Q Consensus 304 ~gs~iivTtR 313 (314)
++..+|++|.
T Consensus 146 ~~~~fIL~a~ 155 (394)
T PRK07940 146 PRTVWLLCAP 155 (394)
T ss_pred CCCeEEEEEC
Confidence 6777777764
No 70
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.04 E-value=4e-05 Score=75.84 Aligned_cols=121 Identities=13% Similarity=0.158 Sum_probs=75.0
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh----------------------cC
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR----------------------KF 226 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----------------------~F 226 (314)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.....-.. ++
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 468999888888988886532 234678999999999999998865321000 11
Q ss_pred ceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCCCC
Q 048765 227 DKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHG 305 (314)
Q Consensus 227 ~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 305 (314)
+ +++++..... ...+++++...+.. -..++.-++|||++.......++.|+.+|..-...
T Consensus 90 d-v~eidaas~~------------------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~ 150 (824)
T PRK07764 90 D-VTEIDAASHG------------------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEH 150 (824)
T ss_pred c-EEEecccccC------------------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCC
Confidence 1 1112111111 11222333222221 12456678999999888777888899999876667
Q ss_pred ceEEEecc
Q 048765 306 SKILVTTR 313 (314)
Q Consensus 306 s~iivTtR 313 (314)
+.+|++|.
T Consensus 151 ~~fIl~tt 158 (824)
T PRK07764 151 LKFIFATT 158 (824)
T ss_pred eEEEEEeC
Confidence 77776653
No 71
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.04 E-value=2.4e-05 Score=70.89 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=38.3
Q ss_pred cccccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 167 DEEEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 167 ~~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...++.|.+..++.|.+.+...-.. +-...+-+.++|++|+|||+||+.+++
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3357899999999988876432110 012345688999999999999999987
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=5.4e-05 Score=72.08 Aligned_cols=132 Identities=14% Similarity=0.119 Sum_probs=74.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+.....-....+ +-.|....+. +.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~~C----~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCESC----VALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccHHH----HHhh
Confidence 468999998999999886532 244578999999999999998875211000000 0001110000 0110
Q ss_pred HH---------hcC-CCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EA---------LDG-HESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~---------~~~-~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
.. +.. ......+.+++.+.+... ..+++-++|||++........+.|...+........+|++|
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 00 000 000122233333333221 24566799999998776667888888888666666666655
No 73
>PRK08181 transposase; Validated
Probab=98.03 E-value=2.9e-05 Score=66.89 Aligned_cols=98 Identities=20% Similarity=0.186 Sum_probs=55.3
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
..+.++|++|+|||+||..+.+ ......-.+.|++ ..+++..+..... .......... + .+-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~~----l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIAK----L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHHH----H-hcC
Confidence 4589999999999999999987 3333333455654 3445444433321 1122222222 2 234
Q ss_pred EEEEEeccccCCccCHH--hHHHhhccC-CCCceEEEecc
Q 048765 277 FLLVLDDVWDGNYVKWE--PFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 277 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR 313 (314)
-||||||+.......|. .|...+... ..+ .+||||.
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN 207 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERR-SILITAN 207 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcC
Confidence 59999999654333332 345555422 234 4888875
No 74
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=2.8e-05 Score=65.68 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=27.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE 236 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 236 (314)
...+.|+|..|+|||+||+.+++... ..-....++++..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~--~~~~~~~~i~~~~ 80 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS--YGGRNARYLDAAS 80 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEEehHH
Confidence 45788999999999999999987432 2122345555443
No 75
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=4e-05 Score=73.32 Aligned_cols=135 Identities=12% Similarity=0.147 Sum_probs=75.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCc--eeEEEEcCccccHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFD--KILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~~~~~ 246 (314)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+....--..... ...+-.+....+. +.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C----~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC----QA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH----HH
Confidence 569999999999999886532 345788999999999999998876321111000 0000001111011 11
Q ss_pred HHHHhcCC--------CCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 247 MVEALDGH--------ESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 247 i~~~~~~~--------~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
|....+.. .....+++++++.+... ..+++-++|||++...+....+.|..++..-..++++|++|
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 11111110 01122233333333211 23556689999998776556778888887666677777665
No 76
>PRK10536 hypothetical protein; Provisional
Probab=98.00 E-value=0.0001 Score=62.50 Aligned_cols=131 Identities=17% Similarity=0.204 Sum_probs=73.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc----Cc-----ccc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV----SE-----TFE 239 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~----~~-----~~~ 239 (314)
..+.++......++.+|.. ..++.+.|++|+|||+||..+..+.-..+.|+.++...- .+ +.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3467788888888888853 248999999999999999988764322344554444321 11 111
Q ss_pred HHH----HHHHHHHHhcCCCCCCCcHHHHHH----H----HHHHccCceE---EEEEeccccCCccCHHhHHHhhccCCC
Q 048765 240 EFR----VAKAMVEALDGHESHLGEFQSLLR----H----IYESIAGKSF---LLVLDDVWDGNYVKWEPFYHCLKNGLH 304 (314)
Q Consensus 240 ~~~----~~~~i~~~~~~~~~~~~~~~~~~~----~----l~~~L~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~~ 304 (314)
..+ .+.-+...+..-- .....+.+.. . -..++++..+ +||+|+..+.+ -..+...+.....
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~---~~~~k~~ltR~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVT---AAQMKMFLTRLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCC---HHHHHHHHhhcCC
Confidence 111 1111222111100 0011111110 0 0135566554 99999997764 3666666666678
Q ss_pred CceEEEe
Q 048765 305 GSKILVT 311 (314)
Q Consensus 305 gs~iivT 311 (314)
+|+||+|
T Consensus 203 ~sk~v~~ 209 (262)
T PRK10536 203 NVTVIVN 209 (262)
T ss_pred CCEEEEe
Confidence 9999986
No 77
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=2.6e-05 Score=74.96 Aligned_cols=133 Identities=12% Similarity=0.162 Sum_probs=74.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.++....-...+ .-...++.-...+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~------~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTND------PKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccCHHHHHHh
Confidence 469999988888888886532 24567899999999999999987632100000 0000111112222222
Q ss_pred HHhcCC-----C---CCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EALDGH-----E---SHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~~~~~-----~---~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
...+.. . ....+++++.+.+... ..+++-++|||++........+.|..++......+.+|++|
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t 157 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILAT 157 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 221110 0 0111222333322211 23567799999997765556777888887655566666665
No 78
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.00 E-value=1e-05 Score=65.53 Aligned_cols=99 Identities=24% Similarity=0.394 Sum_probs=51.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
..-+.++|..|+|||.||..+.+. ...+--.+.|++ ..+++..+-. ... .......... +. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~--~~~~g~~v~f~~------~~~L~~~l~~----~~~-~~~~~~~~~~----l~-~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANE--AIRKGYSVLFIT------ASDLLDELKQ----SRS-DGSYEELLKR----LK-R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHH--HHHTT--EEEEE------HHHHHHHHHC----CHC-CTTHCHHHHH----HH-T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHH--hccCCcceeEee------cCceeccccc----ccc-ccchhhhcCc----cc-c
Confidence 457999999999999999999873 333333456664 3444444332 111 1122222222 22 3
Q ss_pred eEEEEEeccccCCccCHHh--HHHhhccC-CCCceEEEecc
Q 048765 276 SFLLVLDDVWDGNYVKWEP--FYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR 313 (314)
-=||||||+.......|.. +...+... .++ .+||||.
T Consensus 109 ~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN 148 (178)
T PF01695_consen 109 VDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSN 148 (178)
T ss_dssp SSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEES
T ss_pred ccEecccccceeeecccccccchhhhhHhhccc-CeEeeCC
Confidence 3588899997654333432 34434321 234 4778874
No 79
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.99 E-value=6.9e-05 Score=63.58 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=27.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
...+.|+|+.|+|||+|++.+++. .......+.|+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~ 82 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLD 82 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHH
Confidence 357899999999999999999873 33333445666553
No 80
>PRK06921 hypothetical protein; Provisional
Probab=97.99 E-value=5.6e-05 Score=65.26 Aligned_cols=98 Identities=24% Similarity=0.366 Sum_probs=55.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhc-CceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRK-FDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (314)
...+.++|..|+|||+|+..+++ ..... ...++|++.. +++..+...+ ......+. .+ .
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~~------~l~~~l~~~~----------~~~~~~~~-~~-~ 176 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPFV------EGFGDLKDDF----------DLLEAKLN-RM-K 176 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEHH------HHHHHHHHHH----------HHHHHHHH-Hh-c
Confidence 45789999999999999999988 44333 3456676542 3333332222 11111122 22 2
Q ss_pred ceEEEEEecc-----ccCCccCHHh--HHHhhccC-CCCceEEEecc
Q 048765 275 KSFLLVLDDV-----WDGNYVKWEP--FYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 275 kr~LlVlDdv-----~~~~~~~~~~--l~~~l~~~-~~gs~iivTtR 313 (314)
+--||||||+ ......+|.. |...+... .++..+||||.
T Consensus 177 ~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 177 KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 4569999999 3222234553 55544322 23455888874
No 81
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.99 E-value=2.8e-05 Score=77.62 Aligned_cols=135 Identities=20% Similarity=0.273 Sum_probs=78.2
Q ss_pred cccccchhhHHHHHHHhhccCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.||+.+... .-+.....+-++++......
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 4689999999999888754211 11244567899999999999999988663 22222233334444322111
Q ss_pred HHHHHhcCCCCCCC--cHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCC-----------CCceEEEec
Q 048765 246 AMVEALDGHESHLG--EFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL-----------HGSKILVTT 312 (314)
Q Consensus 246 ~i~~~~~~~~~~~~--~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTt 312 (314)
.+..-++..+.... ....+...++ +....+|+||++...+...++.|...+.++. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 11111222111111 1112233333 3456799999998877777777877776542 345566665
No 82
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.99 E-value=3.1e-05 Score=65.11 Aligned_cols=37 Identities=32% Similarity=0.419 Sum_probs=29.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV 234 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~ 234 (314)
.-.+.|+|..|+|||||+..+.. .....|..+++++-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 34678999999999999999987 45677877776643
No 83
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.98 E-value=8.3e-05 Score=63.16 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=57.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
...+.++|.+|+|||+|+..+++.. ...-..+++++ ..+++..+-..+.. ...... .+.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-c
Confidence 3478899999999999999998843 33334556663 34444444443321 011122 2223344 3
Q ss_pred eEEEEEeccccCCccCHHh--HHHhhccC-CCCceEEEec
Q 048765 276 SFLLVLDDVWDGNYVKWEP--FYHCLKNG-LHGSKILVTT 312 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~iivTt 312 (314)
.=||||||+......+|.. +...+... .+.-.+||||
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitS 202 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLT 202 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 4589999997765556664 34444321 2233477776
No 84
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=7.9e-05 Score=67.70 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=68.4
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhh------hhcCcee-EEEEcCccccHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEV------IRKFDKI-LWVCVSETFEEF 241 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~------~~~F~~~-~wv~~~~~~~~~ 241 (314)
.+++|.+...+.+...+.... -.+.+.++|++|+|||++|+.+.....- ...|... +-++.....+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 468999999999998886532 3468889999999999999988653110 0112111 111111111111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 242 RVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
. ...+.+.+.. .-..+++-+|++|++.......++.+...+......+.+|++|
T Consensus 92 ~-i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~ 145 (367)
T PRK14970 92 D-IRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILAT 145 (367)
T ss_pred H-HHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEe
Confidence 1 1111111110 0123455689999997654445677777776544455555554
No 85
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.98 E-value=6.9e-05 Score=65.96 Aligned_cols=121 Identities=15% Similarity=0.169 Sum_probs=69.9
Q ss_pred cchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhc
Q 048765 173 GRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALD 252 (314)
Q Consensus 173 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~ 252 (314)
++........+++..-.. ....+-+.++|..|+|||.|+..+++.. ...--.+.++++ ..++..+...+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEH------HHHHHHHHHHHh
Confidence 344444445555543221 1234678999999999999999999843 333333556644 345555555542
Q ss_pred CCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHh--HHHhh-ccC-CCCceEEEecc
Q 048765 253 GHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEP--FYHCL-KNG-LHGSKILVTTR 313 (314)
Q Consensus 253 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~iivTtR 313 (314)
. ...... +.. + .+--||||||+......+|.. +...+ ... ..+-.+|+||-
T Consensus 205 ~-----~~~~~~---l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 205 D-----GSVKEK---IDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred c-----CcHHHH---HHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 2 112222 222 2 246699999998765567864 54444 322 24455888873
No 86
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=6.7e-05 Score=71.96 Aligned_cols=139 Identities=16% Similarity=0.231 Sum_probs=72.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE-cCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC-VSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i 247 (314)
.+++|.+.-+..|...+..+. -...+.++|+.|+||||+|+.+....--...++-..|.. ...+++.-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468998888888888776432 235588999999999999988865321111010000110 00000000000111
Q ss_pred HHHhc-------C-CCCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 248 VEALD-------G-HESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 248 ~~~~~-------~-~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
...-. + ......++.++.+.+.. -..+++-++|+|++........+.|..++......+.+|++|
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 10000 0 00011223333333321 124556689999998776556778888887665566666555
No 87
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.96 E-value=6.2e-05 Score=75.50 Aligned_cols=125 Identities=16% Similarity=0.234 Sum_probs=74.0
Q ss_pred cccccchhhHHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+...+.....+ ......++.++|+.|+|||++|+.+... ....-...+.++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 46899999999999888653211 1123467789999999999999999762 2222234455666653322111
Q ss_pred HHHHHhcCCCCCC--CcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccC
Q 048765 246 AMVEALDGHESHL--GEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG 302 (314)
Q Consensus 246 ~i~~~~~~~~~~~--~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 302 (314)
...++..+... .....+...++ .....+|+||++...+...++.|...|..+
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~---~~p~~vlllDeieka~~~v~~~Ll~~l~~g 694 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVR---RKPYSVVLFDEVEKAHPDVFNVLLQVLDDG 694 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHH---cCCCcEEEEeccccCCHHHHHHHHHHHhcC
Confidence 11122211111 11122222222 233459999999988777888888887544
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.94 E-value=4.3e-05 Score=75.47 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=72.0
Q ss_pred cccccchhhHHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+...+.....+ ......++.++|+.|+|||+||+.++.. . +...+.+++++......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc---
Confidence 35788888888888877642110 1123456889999999999999999763 2 33456666655322211
Q ss_pred HHHHHhcCCCCCC--CcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccC
Q 048765 246 AMVEALDGHESHL--GEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG 302 (314)
Q Consensus 246 ~i~~~~~~~~~~~--~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 302 (314)
+...++..+... .....+...++ .....+|+||++...+.+.++.|...+..+
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVR---KHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHH---hCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 122222221111 11122222222 234569999999987777777787777543
No 89
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=7.9e-05 Score=69.21 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=59.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
..-+.|+|..|+|||+|++.+.+.......-..++++ +..++...+...+.... .....+.+.+. +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 4568899999999999999998732221212234454 44566667766664210 11233433333 3
Q ss_pred eEEEEEeccccCCc--cCHHhHHHhhccC-CCCceEEEecc
Q 048765 276 SFLLVLDDVWDGNY--VKWEPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 276 r~LlVlDdv~~~~~--~~~~~l~~~l~~~-~~gs~iivTtR 313 (314)
.-+|||||+..... ...+.+...+... ..|..||+|+.
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 45899999965321 1123455444321 34557888864
No 90
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.92 E-value=0.00017 Score=68.55 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=56.2
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcC--ceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKF--DKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (314)
..+.|+|..|+|||+|++.+++. ....+ -.++|++ ..+++..+...+... . ...+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~-----~----~~~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG-----K----GDSFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc-----c----HHHHHHHhhc
Confidence 45899999999999999999884 33322 2455654 344444555444221 1 1223333332
Q ss_pred ceEEEEEeccccCCcc-CHH-hHHHhhccC-CCCceEEEecc
Q 048765 275 KSFLLVLDDVWDGNYV-KWE-PFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 275 kr~LlVlDdv~~~~~~-~~~-~l~~~l~~~-~~gs~iivTtR 313 (314)
-=+|+|||+...... .|. .|...|... .+|..|||||.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 358899999654222 232 344444321 33556888875
No 91
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.91 E-value=8.7e-05 Score=74.30 Aligned_cols=125 Identities=16% Similarity=0.260 Sum_probs=70.8
Q ss_pred cccccchhhHHHHHHHhhccCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+...+..... .......++.++|+.|+|||+||+.++.. ....-...+.++++......
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~~~---- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFMEKH---- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhhhh----
Confidence 4688999998888888754211 01123457889999999999999999763 22222334556665432111
Q ss_pred HHHHHhcCCCCCCC-cHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhccC
Q 048765 246 AMVEALDGHESHLG-EFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNG 302 (314)
Q Consensus 246 ~i~~~~~~~~~~~~-~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 302 (314)
...+-++..+.... +.. ..+.+.+ ....-+|+||++...+...+..|...+..+
T Consensus 642 ~~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g 697 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDG 697 (857)
T ss_pred hHHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhC
Confidence 11112222211111 111 1122222 223369999999877667778887777543
No 92
>PRK06526 transposase; Provisional
Probab=97.91 E-value=4.7e-05 Score=65.19 Aligned_cols=99 Identities=20% Similarity=0.239 Sum_probs=53.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
...+.++|++|+|||+||..+.... ...--.+.|+ +..+++..+..... ..... ..+... .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a--~~~g~~v~f~------t~~~l~~~l~~~~~-----~~~~~---~~l~~l--~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA--CQAGHRVLFA------TAAQWVARLAAAHH-----AGRLQ---AELVKL--GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH--HHCCCchhhh------hHHHHHHHHHHHHh-----cCcHH---HHHHHh--cc
Confidence 3468999999999999999997632 2222223333 33344444433221 11111 223222 23
Q ss_pred eEEEEEeccccCCccCHH--hHHHhhcc-CCCCceEEEecc
Q 048765 276 SFLLVLDDVWDGNYVKWE--PFYHCLKN-GLHGSKILVTTR 313 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~iivTtR 313 (314)
.-||||||+.......+. .+...+.. ..++| +|+||.
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn 199 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSN 199 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcC
Confidence 468999999754322232 24444432 23455 888875
No 93
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.90 E-value=0.00014 Score=67.03 Aligned_cols=100 Identities=24% Similarity=0.341 Sum_probs=56.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcC--ceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKF--DKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
...+.|+|+.|+|||+|++.+++. ..... ..++|+++ .++...+...+... ... .+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KME----EFKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CHH----HHHHHHH
Confidence 456889999999999999999884 33322 34566643 34444555554321 122 2233332
Q ss_pred CceEEEEEeccccCCccC-H-HhHHHhhccC-CCCceEEEecc
Q 048765 274 GKSFLLVLDDVWDGNYVK-W-EPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 274 ~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~~-~~gs~iivTtR 313 (314)
+ .-+|+|||+....... + +.+...+... ..|..||+||.
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 2 3489999996532111 1 2344444321 23556888764
No 94
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.89 E-value=0.0002 Score=57.04 Aligned_cols=119 Identities=15% Similarity=0.105 Sum_probs=70.4
Q ss_pred cchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh---h----------------hhcCceeEEEE
Q 048765 173 GRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE---V----------------IRKFDKILWVC 233 (314)
Q Consensus 173 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~---~----------------~~~F~~~~wv~ 233 (314)
|.+...+.|...+.... -...+.++|+.|+||+++|..+....- . ..|.| ..|+.
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEE
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEe
Confidence 44555666666665432 345678999999999999988755210 0 11222 23333
Q ss_pred cCcc---ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEE
Q 048765 234 VSET---FEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILV 310 (314)
Q Consensus 234 ~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 310 (314)
-... ...+++. .+...+...+ ..++.-++|||++...+....+.|+..+...+..+.+|+
T Consensus 75 ~~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 75 PDKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred cccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 2221 2222221 3332222111 134677999999999887889999999988888899999
Q ss_pred eccC
Q 048765 311 TTRK 314 (314)
Q Consensus 311 TtR~ 314 (314)
+|.+
T Consensus 138 ~t~~ 141 (162)
T PF13177_consen 138 ITNN 141 (162)
T ss_dssp EES-
T ss_pred EECC
Confidence 8864
No 95
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.88 E-value=5.6e-05 Score=69.03 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=37.6
Q ss_pred ccccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 168 EEEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+.+.|++..++.+.+.+...-.. +-...+-+.++|++|+|||++|+.+++
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHH
Confidence 357889999998888765321100 113356788999999999999999987
No 96
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.88 E-value=0.00017 Score=59.75 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=74.1
Q ss_pred ccccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 166 IDEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 166 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
.+-..++|.+.+.+.|++.-..=- .+....-+.+||..|+|||.|++++.+ ++.+.+-..+ .+...
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glrLV--EV~k~-------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLN--EYADEGLRLV--EVDKE-------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHH--HHHhcCCeEE--EEcHH--------
Confidence 344678998888888776533211 124466889999999999999999988 5444443322 22211
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEecccc-CCccCHHhHHHhhccC---CCCceEEEecc
Q 048765 246 AMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWD-GNYVKWEPFYHCLKNG---LHGSKILVTTR 313 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~---~~gs~iivTtR 313 (314)
+..++..+...|+. ..+||.|+.||+.- .....++.|+..|.-+ .+...++..|.
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 11122222222222 57899999999952 3335788888888633 44454555443
No 97
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.88 E-value=5.7e-05 Score=67.04 Aligned_cols=101 Identities=15% Similarity=0.301 Sum_probs=56.0
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
..+.++|..|+|||+||..+++. ....--.++|+++. +++..+...... ...+.... + +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~--l~~~g~~V~y~t~~------~l~~~l~~~~~~---~~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKE--LLDRGKSVIYRTAD------ELIEILREIRFN---NDKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHH--HHHCCCeEEEEEHH------HHHHHHHHHHhc---cchhHHHH---H-HHhc-cC
Confidence 56899999999999999999883 33333356666543 333333332111 01111111 2 2222 23
Q ss_pred EEEEEeccccCCccCHH--hHHHhhccC-CCCceEEEecc
Q 048765 277 FLLVLDDVWDGNYVKWE--PFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 277 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR 313 (314)
=||||||+.......|. .|...+... .++-.+||||-
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 58999999665434443 355544422 33456888874
No 98
>PRK09183 transposase/IS protein; Provisional
Probab=97.87 E-value=9.4e-05 Score=63.64 Aligned_cols=99 Identities=20% Similarity=0.275 Sum_probs=52.6
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
..+.|+|++|+|||+|+..+..... ..-..+.+++ ..+++..+...... ... ...++.. -.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v~~~~------~~~l~~~l~~a~~~-----~~~---~~~~~~~-~~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV--RAGIKVRFTT------AADLLLQLSTAQRQ-----GRY---KTTLQRG-VMAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeEEEEe------HHHHHHHHHHHHHC-----CcH---HHHHHHH-hcCC
Confidence 4677999999999999999976322 2222333443 23333333222111 111 1222222 2344
Q ss_pred EEEEEeccccCCccCHH--hHHHhhccC-CCCceEEEecc
Q 048765 277 FLLVLDDVWDGNYVKWE--PFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 277 ~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR 313 (314)
-++||||+.......+. .+...+... ..++ +|+||.
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn 204 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSN 204 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecC
Confidence 69999999754323333 355544322 3465 888874
No 99
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00017 Score=69.52 Aligned_cols=120 Identities=17% Similarity=0.210 Sum_probs=73.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh---------------------hhhcCc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE---------------------VIRKFD 227 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~---------------------~~~~F~ 227 (314)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+..... ...||+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999886532 245678999999999999988755211 011333
Q ss_pred eeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCc
Q 048765 228 KILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGS 306 (314)
Q Consensus 228 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 306 (314)
. ..++.+....... +..++..+... ..+++-++|||++.......++.|..++..-..++
T Consensus 92 ~-~~ld~~~~~~vd~------------------Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 92 I-HELDAASNNSVDD------------------IRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred e-EEecccccCCHHH------------------HHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 2 1222222111111 12222111111 23456689999998776667888988888766667
Q ss_pred eEEEec
Q 048765 307 KILVTT 312 (314)
Q Consensus 307 ~iivTt 312 (314)
.+|++|
T Consensus 153 ifIL~t 158 (614)
T PRK14971 153 IFILAT 158 (614)
T ss_pred EEEEEe
Confidence 666655
No 100
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.0002 Score=67.14 Aligned_cols=121 Identities=16% Similarity=0.196 Sum_probs=70.4
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh---hhh----------------cCcee
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE---VIR----------------KFDKI 229 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~---~~~----------------~F~~~ 229 (314)
.+++|.+.-...|..++.... -...+.++|+.|+||||+|+.++.... ... .|.-.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899998999988886533 234567899999999999998765211 000 01111
Q ss_pred EEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 230 LWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 230 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
++++.+.... ..+.+.+.+.+... ..+++-++|+|++........+.|...+...++...+
T Consensus 91 ~eidaas~~g------------------vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRG------------------IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCC------------------HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1121111111 11122232222211 2466779999999766545567787777765555555
Q ss_pred EEec
Q 048765 309 LVTT 312 (314)
Q Consensus 309 ivTt 312 (314)
|++|
T Consensus 153 Il~t 156 (486)
T PRK14953 153 ILCT 156 (486)
T ss_pred EEEE
Confidence 5554
No 101
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.0001 Score=68.42 Aligned_cols=101 Identities=21% Similarity=0.294 Sum_probs=58.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhc-Cc-eeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRK-FD-KILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-F~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
..-+.|+|..|+|||+|++.+++. .... .. .+.|++. .+++..+...+... ... .+.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHH
Confidence 445899999999999999999984 3332 32 4566643 45566666655321 122 2333333
Q ss_pred CceEEEEEeccccCC-ccCH-HhHHHhhccC-CCCceEEEecc
Q 048765 274 GKSFLLVLDDVWDGN-YVKW-EPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 274 ~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~~-~~gs~iivTtR 313 (314)
.+.-+|+|||+.... ...+ ..+...+... ..|..||+||.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 345689999996431 1112 2344443211 23456888874
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.00017 Score=69.08 Aligned_cols=132 Identities=14% Similarity=0.199 Sum_probs=72.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
++++|.+.-...|...+.... -...+.++|+.|+||||+|+.+....--....+. -.|... .....|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c~~c----~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPCNVC----PPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCCCcc----HHHHHHh
Confidence 569999988888888886532 2456679999999999999888653110000000 000000 0000000
Q ss_pred HH-------hcCC-CCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EA-------LDGH-ESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~-------~~~~-~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
.. +.+. .....+++++...+... ..+++-++|||++........+.|...+........+|++|
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 00 0000 00111233333333211 23566689999998776566788888887666666666655
No 103
>PRK08118 topology modulation protein; Reviewed
Probab=97.83 E-value=1e-05 Score=64.82 Aligned_cols=35 Identities=31% Similarity=0.614 Sum_probs=28.0
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhh-hcCceeEEE
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVI-RKFDKILWV 232 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv 232 (314)
-|.|+|++|+||||||+.+++..... -+||..+|-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 58899999999999999999854443 457877753
No 104
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00016 Score=68.92 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=69.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.+++|.+..+..|...+.... -...+.++|+.|+||||+|+.+....--....+.. .|... ..-+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHh
Confidence 468898877777777775432 24677889999999999999887632100000000 00000 0001111
Q ss_pred HHhcCC--------CCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EALDGH--------ESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~~~~~--------~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
...... .....+.+.+.+.+.. -..+++-+||||++........+.|...+........+|++|
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaT 156 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLAT 156 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEec
Confidence 000000 0001112222222221 124567799999998776556777888776544455566655
No 105
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.82 E-value=0.0003 Score=65.67 Aligned_cols=100 Identities=24% Similarity=0.331 Sum_probs=55.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcC--ceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKF--DKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
..-+.|+|+.|+|||+|++.+.+. ....+ -.++|++.. ++...+...+... .. ..+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TM----EEFKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cH----HHHHHHHh
Confidence 456889999999999999999884 43333 345566443 3344444444221 11 22333333
Q ss_pred CceEEEEEeccccCCccC--HHhHHHhhccC-CCCceEEEecc
Q 048765 274 GKSFLLVLDDVWDGNYVK--WEPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 274 ~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~iivTtR 313 (314)
+.-+|+|||+....... .+.+...+... ..|..||+||.
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 34489999996532111 12344433211 23556888774
No 106
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.81 E-value=0.00011 Score=73.38 Aligned_cols=124 Identities=15% Similarity=0.216 Sum_probs=71.8
Q ss_pred cccccchhhHHHHHHHhhccCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+...+..... ........+.++|+.|+|||+||+.+.. ..-..-...+-++++.......+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~--~l~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALAS--YFFGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHH--HhcCCccceEEEEchhccccccH--
Confidence 4688999989988887753211 1113345677899999999999999876 22111123445555543322211
Q ss_pred HHHHHhcCCCCCC--CcHHHHHHHHHHHccCc-eEEEEEeccccCCccCHHhHHHhhccC
Q 048765 246 AMVEALDGHESHL--GEFQSLLRHIYESIAGK-SFLLVLDDVWDGNYVKWEPFYHCLKNG 302 (314)
Q Consensus 246 ~i~~~~~~~~~~~--~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~ 302 (314)
...++..+... .... .+.+.+..+ ..+|+||++...+...++.|...|..+
T Consensus 585 --~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g 638 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDG 638 (821)
T ss_pred --HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccC
Confidence 11122211111 1112 233344333 369999999988777788888877654
No 107
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.80 E-value=0.00021 Score=58.83 Aligned_cols=127 Identities=23% Similarity=0.249 Sum_probs=63.5
Q ss_pred cchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC----ccc-----cHHH-
Q 048765 173 GRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS----ETF-----EEFR- 242 (314)
Q Consensus 173 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~----~~~-----~~~~- 242 (314)
++..+-...++.|.. ..++.+.|++|+|||.||....-+.-..++|+.++++.-. +.. +..+
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 345555666666652 3589999999999999998887665455788888877421 111 1000
Q ss_pred ---HHHHHHHHhcCCCCCCCcHHHHHHHH------HHHccCc---eEEEEEeccccCCccCHHhHHHhhccCCCCceEEE
Q 048765 243 ---VAKAMVEALDGHESHLGEFQSLLRHI------YESIAGK---SFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILV 310 (314)
Q Consensus 243 ---~~~~i~~~~~~~~~~~~~~~~~~~~l------~~~L~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iiv 310 (314)
.+.-+...+..-. .....+.+.+.= ..+++|. ..+||+|++.+.. -.++...+-....|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t---~~~~k~ilTR~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLT---PEELKMILTRIGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG-----HHHHHHHHTTB-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCC---HHHHHHHHcccCCCcEEEE
Confidence 1111111111100 111222222110 1344554 4699999997754 3556666766678999998
Q ss_pred e
Q 048765 311 T 311 (314)
Q Consensus 311 T 311 (314)
+
T Consensus 152 ~ 152 (205)
T PF02562_consen 152 T 152 (205)
T ss_dssp E
T ss_pred e
Confidence 6
No 108
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.79 E-value=0.00014 Score=60.44 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=55.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHh-c---CC-----CCCCCcHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEAL-D---GH-----ESHLGEFQSL 264 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~-~---~~-----~~~~~~~~~~ 264 (314)
+.-.++.|+|++|+|||+++.+++.. .......++|++... +....+.+. +... . .. .....+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 45689999999999999999988763 333457899999876 555554433 2221 1 00 1111222334
Q ss_pred HHHHHHHccC-ceEEEEEeccc
Q 048765 265 LRHIYESIAG-KSFLLVLDDVW 285 (314)
Q Consensus 265 ~~~l~~~L~~-kr~LlVlDdv~ 285 (314)
...+.+.+.. +.-+||+|.+-
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcH
Confidence 5555555543 56699999984
No 109
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.79 E-value=0.00022 Score=71.38 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=38.0
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++||+.+++.+++.|.... ...+.++|++|+|||++|+.++..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997643 345579999999999999998774
No 110
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=7.9e-05 Score=72.20 Aligned_cols=126 Identities=14% Similarity=0.268 Sum_probs=77.7
Q ss_pred cccccchhhHHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+.+.+.....+ ......+...+|+.|+|||.||+.++. ..-+.=+..+-+++|+.....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~--~Lfg~e~aliR~DMSEy~EkH---- 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE--ALFGDEQALIRIDMSEYMEKH---- 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH--HhcCCCccceeechHHHHHHH----
Confidence 46899999999988887643322 234566777899999999999999876 221111455556666543222
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHccCceE-EEEEeccccCCccCHHhHHHhhccC
Q 048765 246 AMVEALDGHESHLGEFQSLLRHIYESIAGKSF-LLVLDDVWDGNYVKWEPFYHCLKNG 302 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 302 (314)
.+.+-++..+......+ -..|-+.++.++| +|.||+|.+.+++..+-+...|.++
T Consensus 565 sVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 565 SVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 22333443332221111 1223344566666 9999999887766777777777654
No 111
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.78 E-value=0.00038 Score=62.88 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=75.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeE------EEEcCccccHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKIL------WVCVSETFEEFR 242 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~------wv~~~~~~~~~~ 242 (314)
..++|.+.....|.+.+.... -...+.++|+.|+||+++|..+....--........ -..+.... .
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---P 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---h
Confidence 568999998888988886532 245688999999999999987765211001000000 00000000 0
Q ss_pred HHHHHHHHhcCC----CC---CC-----C--cHHHHHHHHHHHc-----cCceEEEEEeccccCCccCHHhHHHhhccCC
Q 048765 243 VAKAMVEALDGH----ES---HL-----G--EFQSLLRHIYESI-----AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL 303 (314)
Q Consensus 243 ~~~~i~~~~~~~----~~---~~-----~--~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 303 (314)
..+.+...-... .+ .. . ..++ +..+.+++ .+.+-++|||++...+....+.|...+....
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp 169 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP 169 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC
Confidence 111111111100 00 00 0 1122 23333333 3566799999999887777888888887665
Q ss_pred CCceEEEecc
Q 048765 304 HGSKILVTTR 313 (314)
Q Consensus 304 ~gs~iivTtR 313 (314)
.++.+|++|.
T Consensus 170 ~~~~~IL~t~ 179 (365)
T PRK07471 170 ARSLFLLVSH 179 (365)
T ss_pred CCeEEEEEEC
Confidence 6676777765
No 112
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00016 Score=66.99 Aligned_cols=100 Identities=23% Similarity=0.273 Sum_probs=56.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
..-+.|+|+.|+|||+|++.+++. .......+++++ ...+...+...+... . ...++..+. .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~--l~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHA--LRESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH--HHHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 456889999999999999999884 333233455554 334444555554321 1 123333333 3
Q ss_pred eEEEEEeccccCCccC--HHhHHHhhccC-CCCceEEEecc
Q 048765 276 SFLLVLDDVWDGNYVK--WEPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~iivTtR 313 (314)
.-+|+|||+....... .+.+...+... ..|..||+||.
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 4588999986542111 23344443211 23556888874
No 113
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00012 Score=65.73 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=76.4
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh--hcCceeEEEEcCccccHHHHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI--RKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
...++|.+.....|...+.... -...+.|+|+.|+||||+|+.+....--. ..+... ....+...-...+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHH
Confidence 3578999999999999886532 34568899999999999998886632110 001111 0011111111222
Q ss_pred HHHHHhcCC---------CC-----CCCcHHHHHHHHHHHc-----cCceEEEEEeccccCCccCHHhHHHhhccCCCCc
Q 048765 246 AMVEALDGH---------ES-----HLGEFQSLLRHIYESI-----AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGS 306 (314)
Q Consensus 246 ~i~~~~~~~---------~~-----~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 306 (314)
.+...-.+. .. ..-..++ +..+.+++ .+++-++|||++...+....+.|...+.......
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 222221100 00 0001122 22334443 3567799999998887677788888887654455
Q ss_pred eEEEec
Q 048765 307 KILVTT 312 (314)
Q Consensus 307 ~iivTt 312 (314)
.+|++|
T Consensus 173 ~fiLit 178 (351)
T PRK09112 173 LFILIS 178 (351)
T ss_pred eEEEEE
Confidence 555554
No 114
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00014 Score=62.28 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=50.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (314)
+..-+.++|.+|+|||.||..+.+.. ...--.+.++ +..+++..+...+... .. ...+...+ .
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l--~~~g~sv~f~------~~~el~~~Lk~~~~~~-----~~---~~~l~~~l-~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL--LKAGISVLFI------TAPDLLSKLKAAFDEG-----RL---EEKLLREL-K 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEE------EHHHHHHHHHHHHhcC-----ch---HHHHHHHh-h
Confidence 35678999999999999999998843 3333345555 4445555665555321 11 11222211 2
Q ss_pred ceEEEEEeccccCCccCHH
Q 048765 275 KSFLLVLDDVWDGNYVKWE 293 (314)
Q Consensus 275 kr~LlVlDdv~~~~~~~~~ 293 (314)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 3459999999775555555
No 115
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.75 E-value=0.00025 Score=59.80 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=54.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHH--------hcCC-CCCCCcHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEA--------LDGH-ESHLGEFQSL 264 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~--------~~~~-~~~~~~~~~~ 264 (314)
+.-.++.|+|.+|+|||+++.+++.. .......++|++.. .+....+. ++... +... .....+..+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 45679999999999999999998763 33345678999887 55554432 22221 1000 1111122333
Q ss_pred HHHHHHHccCceEEEEEeccc
Q 048765 265 LRHIYESIAGKSFLLVLDDVW 285 (314)
Q Consensus 265 ~~~l~~~L~~kr~LlVlDdv~ 285 (314)
++.+...+..+.-++|+|.+-
T Consensus 97 i~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHHhcccEEEEeCcH
Confidence 444444444677799999983
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=0.00043 Score=65.17 Aligned_cols=118 Identities=17% Similarity=0.173 Sum_probs=72.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhh--h------------------hcCce
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEV--I------------------RKFDK 228 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--~------------------~~F~~ 228 (314)
.+++|.+.-...|...+.... -.....++|+.|+||||+|+.+....-- . .|++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 468998888888888886432 3456689999999999999987652100 0 0111
Q ss_pred eEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH--H--ccCceEEEEEeccccCCccCHHhHHHhhccCCC
Q 048765 229 ILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYE--S--IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLH 304 (314)
Q Consensus 229 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~--~--L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 304 (314)
++.++.+... ..+++.+.+.. + ..+++-++|||++........+.|...+...+.
T Consensus 88 v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 1112111111 12222222211 0 125667999999988766677888888876666
Q ss_pred CceEEEecc
Q 048765 305 GSKILVTTR 313 (314)
Q Consensus 305 gs~iivTtR 313 (314)
.+++|++|.
T Consensus 147 ~t~FIL~tt 155 (535)
T PRK08451 147 YVKFILATT 155 (535)
T ss_pred ceEEEEEEC
Confidence 777777664
No 117
>PRK04296 thymidine kinase; Provisional
Probab=97.73 E-value=0.00011 Score=60.21 Aligned_cols=111 Identities=13% Similarity=0.014 Sum_probs=59.3
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHHccC
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESH--LGEFQSLLRHIYESIAG 274 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~L~~ 274 (314)
.++.|+|+.|.||||++..+... ...+...++.+. ..++.......+++.++..... .....++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 46789999999999999888773 333333344342 1112222233345555432111 2334455555554 334
Q ss_pred ceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 275 KSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 275 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
+.-+||+|.+.-.+.+...++...+ ...|-.||+|.++
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~ 115 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLD 115 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecC
Confidence 5569999999443211122233332 2457778888653
No 118
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.72 E-value=0.0014 Score=65.33 Aligned_cols=50 Identities=26% Similarity=0.346 Sum_probs=37.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+...+.+.+++.........+..++.++|++|+|||++|+.++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45889888888888876532211112345789999999999999999987
No 119
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.71 E-value=0.00022 Score=71.28 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=38.0
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++||+.++.+++..|.... ...+.++|++|+|||++|+.++..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987643 345669999999999999999873
No 120
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.70 E-value=0.00039 Score=61.87 Aligned_cols=124 Identities=16% Similarity=0.155 Sum_probs=73.2
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh-------------------cCceeE
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR-------------------KFDKIL 230 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-------------------~F~~~~ 230 (314)
.++|.+.....+..+..... .....+.++|++|+||||+|..+....--.. .+.-+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677777888888877543 1233588999999999999988876321000 012233
Q ss_pred EEEcCcccc---HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCce
Q 048765 231 WVCVSETFE---EFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSK 307 (314)
Q Consensus 231 wv~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 307 (314)
.++.+.... ..+..+.+.+...... ..++.-+++||+++......-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 333333222 1222222222221110 035678999999987765556667777766666778
Q ss_pred EEEecc
Q 048765 308 ILVTTR 313 (314)
Q Consensus 308 iivTtR 313 (314)
+|++|.
T Consensus 142 ~il~~n 147 (325)
T COG0470 142 FILITN 147 (325)
T ss_pred EEEEcC
Confidence 887764
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00043 Score=66.77 Aligned_cols=134 Identities=14% Similarity=0.191 Sum_probs=72.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|.+.....|..++.... -...+.++|+.|+||||+|+.++...--. .+.... ...+..-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCC----CCCCcccHHHHHHh
Confidence 468899888888888886532 23467899999999999999987632110 000000 00111111111221
Q ss_pred HHhcCC-----C---CCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EALDGH-----E---SHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~~~~~-----~---~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
...+.. . .....+++++..+... ..+++-++|||++.......++.|...+........+|++|
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t 158 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLAT 158 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEe
Confidence 111110 0 0111223333222211 13566799999998776567788888887655455555554
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.00039 Score=64.70 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=70.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh---------------------hcCc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI---------------------RKFD 227 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~---------------------~~F~ 227 (314)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+....--. .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999998998888886532 24567889999999999998886521100 0111
Q ss_pred eeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCc
Q 048765 228 KILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGS 306 (314)
Q Consensus 228 ~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 306 (314)
.++++...... ..+...+.+.+... ..+++-++|+|++........+.|..++.......
T Consensus 92 -~~~i~g~~~~g------------------id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 92 -VLEIDGASHRG------------------IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred -eEEeeccccCC------------------HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 11111111111 11122222222111 23567789999997665445667888887655566
Q ss_pred eEEEec
Q 048765 307 KILVTT 312 (314)
Q Consensus 307 ~iivTt 312 (314)
.+|++|
T Consensus 153 ~~Il~t 158 (451)
T PRK06305 153 KFFLAT 158 (451)
T ss_pred eEEEEe
Confidence 666665
No 123
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00026 Score=67.34 Aligned_cols=106 Identities=21% Similarity=0.360 Sum_probs=66.5
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
+.+-+|-++-.++|++.|........-+-.++.+||++|+|||.|++.++. ...+.|-. +.++.-.+..+|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~RkfvR---~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFVR---ISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEEE---EecCccccHHHh----
Confidence 356789999999999998764433345567999999999999999999987 56666632 233332222221
Q ss_pred HHHhcCC-CCCCCcH-HHHHHHHHHHccCceEEEEEeccccC
Q 048765 248 VEALDGH-ESHLGEF-QSLLRHIYESIAGKSFLLVLDDVWDG 287 (314)
Q Consensus 248 ~~~~~~~-~~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~ 287 (314)
.+. ..-.... ..+++.+++. +.+.-|++||.++..
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm 429 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKM 429 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhc
Confidence 111 0111111 1233333332 567889999999764
No 124
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00042 Score=67.18 Aligned_cols=131 Identities=15% Similarity=0.186 Sum_probs=72.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|.+..+..|...+.... -.+.+.++|+.|+||||+|+.++...- ..+.. ..+-.|... .....
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~-~~~~pC~~C------~~~~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALN-CSHKT-DLLEPCQEC------IENVN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhc-ccccC-CCCCchhHH------HHhhc
Confidence 468999988888998886532 245677899999999999998865210 00000 000000000 00000
Q ss_pred HH---hcCCC---CCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EA---LDGHE---SHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~---~~~~~---~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
.. +.... ....+.+++.+.+... ..+++-++|||++.......+..|...+...+....+|++|
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 00 00000 0111233333333221 24667799999998766567888888887655565555554
No 125
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.68 E-value=0.00048 Score=65.69 Aligned_cols=132 Identities=11% Similarity=0.107 Sum_probs=73.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.++...--...... ..|....+... +.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C~~----i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSCKS----ID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHHHH----HH
Confidence 468999998999999886532 3457889999999999999988763210000000 00111111111 10
Q ss_pred HH-------hcCCC-CCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EA-------LDGHE-SHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~-------~~~~~-~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
.. +.+.. ....++.++.+.+... ..+++-++|+|++.......++.|...+...+....+|++|
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~t 156 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFAT 156 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEec
Confidence 00 00000 1111222222222211 24566789999998776566788888887655666666655
No 126
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.68 E-value=0.00047 Score=59.54 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=51.1
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH--------HHh----cCCCCCC-CcHHHH
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV--------EAL----DGHESHL-GEFQSL 264 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~--------~~~----~~~~~~~-~~~~~~ 264 (314)
-+.+.|++|+|||+||+.+.. ... .....+++.......+++.... ..+ ....... ..+.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV-- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeec--
Confidence 456899999999999999975 222 2345667766666555543211 000 0000000 0000
Q ss_pred HHHHHHHccCceEEEEEeccccCCccCHHhHHHhhc
Q 048765 265 LRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 265 ~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 300 (314)
-..+.... .+...++||++...+...+..|...+.
T Consensus 96 ~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le 130 (262)
T TIGR02640 96 DNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFE 130 (262)
T ss_pred CchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhc
Confidence 00111111 234689999998766556666766664
No 127
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.67 E-value=0.00044 Score=59.66 Aligned_cols=26 Identities=31% Similarity=0.357 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+....+.++|++|+||||+|+.++..
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 44567889999999999999999763
No 128
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0016 Score=62.07 Aligned_cols=105 Identities=21% Similarity=0.348 Sum_probs=68.1
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
+++-+|+++-.+++++++....-..+.+-+++..+|++|+|||.+++.++. ...+.| +-++++.-.+..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF---fRfSvGG~tDvAeI---- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF---FRFSVGGMTDVAEI---- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce---EEEeccccccHHhh----
Confidence 457899999999999998764433446678999999999999999999987 555555 23445554444433
Q ss_pred HHHhcCCC-CCCCcH-HHHHHHHHHHccCceEEEEEecccc
Q 048765 248 VEALDGHE-SHLGEF-QSLLRHIYESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 248 ~~~~~~~~-~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~ 286 (314)
.+.. ...... ..+++.++.. +-..-|+.||.|++
T Consensus 481 ----kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 481 ----KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ----cccceeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 1110 111111 2233334332 55678999999965
No 129
>PRK09087 hypothetical protein; Validated
Probab=97.65 E-value=0.00015 Score=61.10 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-+.+.|+|+.|+|||+|++.++..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999988763
No 130
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.65 E-value=5.7e-05 Score=67.13 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=42.9
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchH
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.++|.++.++++++++.....+.....+++.++|++|+||||||+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999977553333557899999999999999999998754
No 131
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.0022 Score=58.13 Aligned_cols=102 Identities=25% Similarity=0.260 Sum_probs=59.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (314)
....+.|+|..|+|||+|++.+.+ ....+......+.+ +.+.+...++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 577899999999999999999988 55555542223322 334444444444422 1233444444
Q ss_pred ceEEEEEeccccCCc-cCH-HhHHHhhccC-CCCceEEEecc
Q 048765 275 KSFLLVLDDVWDGNY-VKW-EPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 275 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~~-~~gs~iivTtR 313 (314)
.-=++++||++-... +.| +.+...|..- ..|-.||+|++
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsd 216 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSD 216 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 444889999965311 122 2344444321 33447888885
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.64 E-value=0.0002 Score=70.87 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=37.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++||+.+++.++..|.... ..-+.++|++|+|||++|+.++..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999886543 345679999999999999999873
No 133
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.63 E-value=0.00034 Score=56.51 Aligned_cols=38 Identities=26% Similarity=0.451 Sum_probs=29.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC 233 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 233 (314)
.+..+|.+.|+.|+||||+++.++. .....+...++++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEe
Confidence 3456999999999999999999987 4445555555553
No 134
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.63 E-value=0.00075 Score=64.03 Aligned_cols=139 Identities=19% Similarity=0.160 Sum_probs=91.0
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh---hh---hcCceeEEEEcCccccHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE---VI---RKFDKILWVCVSETFEEFR 242 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~---~~---~~F~~~~wv~~~~~~~~~~ 242 (314)
..+-+|+.+..+|..++..--+. ......+.|.|.+|+|||..+..|..... -+ ..|+ .+.|+.-.-..+..
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34678999999988887643221 13345899999999999999999987533 11 2343 33455555667889
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHc-----cCceEEEEEeccccCCccCHHhHHHhhcc-CCCCceEEEec
Q 048765 243 VAKAMVEALDGHESHLGEFQSLLRHIYESI-----AGKSFLLVLDDVWDGNYVKWEPFYHCLKN-GLHGSKILVTT 312 (314)
Q Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~iivTt 312 (314)
+...|...+.+... ......+.+..++ +.+.++|++|+++..-...-+-+...|.+ ..++||++|.+
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEE
Confidence 99999999976532 2223334444444 24578999999854311223456666764 37788887754
No 135
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.62 E-value=3.2e-05 Score=59.95 Aligned_cols=89 Identities=24% Similarity=0.223 Sum_probs=49.3
Q ss_pred EEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEE
Q 048765 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFL 278 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~L 278 (314)
|.++|++|+|||+||+.++.- .. ....-+.++...+..+++...--. .... ......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~-~~~~--~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPS-NGQF--EFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET--TTTT--CEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeec-cccc--ccccccccccc-----cceeE
Confidence 578999999999999999873 21 233446778877777654322211 0000 00000000000 17899
Q ss_pred EEEeccccCCccCHHhHHHhhc
Q 048765 279 LVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 279 lVlDdv~~~~~~~~~~l~~~l~ 300 (314)
+|||++...+...+..|...+.
T Consensus 69 l~lDEin~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLLE 90 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHHS
T ss_pred EEECCcccCCHHHHHHHHHHHh
Confidence 9999998655455555655554
No 136
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.62 E-value=0.00031 Score=69.08 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=70.5
Q ss_pred ccccchhhHHHHHHHhhccCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 246 (314)
.++|.+..++.|.+.+..... ........+.++|+.|+|||+||+.+... .. ...+.++++.......
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~---- 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT---- 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc----
Confidence 578988888888888763211 01133567889999999999999998763 22 2344556554322111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhccC
Q 048765 247 MVEALDGHESHLGEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNG 302 (314)
Q Consensus 247 i~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 302 (314)
+..-++..+...... ....+.+.+ +....+|+||++...+...++.|...|..+
T Consensus 530 ~~~LiG~~~gyvg~~--~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G 584 (758)
T PRK11034 530 VSRLIGAPPGYVGFD--QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNG 584 (758)
T ss_pred HHHHcCCCCCccccc--ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcC
Confidence 222222221111100 001122223 234579999999887766777787777543
No 137
>PRK07261 topology modulation protein; Provisional
Probab=97.61 E-value=0.00017 Score=58.05 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=32.9
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhh-hcCceeEEEEcCccccHHHHHHHHHHHh
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVI-RKFDKILWVCVSETFEEFRVAKAMVEAL 251 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~~ 251 (314)
.|.|+|++|+||||||+.+....... -+.|...|-......+..++...+...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 47899999999999999987632221 2456666654333333444444443333
No 138
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.61 E-value=0.0008 Score=53.07 Aligned_cols=40 Identities=35% Similarity=0.414 Sum_probs=30.1
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcccc
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFE 239 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 239 (314)
++.|+|.+|+|||+++..+.... ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36799999999999999997733 33446788888766543
No 139
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.60 E-value=0.0002 Score=68.72 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=39.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+++|.+..+..+..++...... .....++.|+|++|+||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999988654321 123457899999999999999999863
No 140
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.60 E-value=0.00058 Score=57.87 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=58.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhh----cCceeEEEEcCccccHHHHHHHHHHHhcCCC------------CC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIR----KFDKILWVCVSETFEEFRVAKAMVEALDGHE------------SH 257 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------~~ 257 (314)
+.-.++.|+|.+|+|||+|+..++-...... ....++|++....++...+. ++++.++... ..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCC
Confidence 4567999999999999999998864321111 13689999988877765543 3333332211 11
Q ss_pred CCcHHHHHHHHHHHc-cC-ceEEEEEecccc
Q 048765 258 LGEFQSLLRHIYESI-AG-KSFLLVLDDVWD 286 (314)
Q Consensus 258 ~~~~~~~~~~l~~~L-~~-kr~LlVlDdv~~ 286 (314)
..+...+...+...+ +. +--|||||.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 122334445555555 34 678999999953
No 141
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.59 E-value=0.00012 Score=56.75 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=60.3
Q ss_pred ccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhh-hhcCceeEEEEcCccccHHHHHHHHHHH
Q 048765 172 CGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEV-IRKFDKILWVCVSETFEEFRVAKAMVEA 250 (314)
Q Consensus 172 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 250 (314)
||....++++.+.+..-. ....-|.|.|..|+||+++|+.++..... ...|... ++... . .++++
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~~-~-----~~~l~- 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCASL-P-----AELLE- 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHCT-C-----HHHHH-
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhhC-c-----HHHHH-
Confidence 455566666666654432 23456789999999999999999774322 1223221 11110 0 11111
Q ss_pred hcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccC-CCCceEEEecc
Q 048765 251 LDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR 313 (314)
. .+.--|+|+|+...+......|...+... ....|+|.||.
T Consensus 67 --------------------~--a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~ 108 (138)
T PF14532_consen 67 --------------------Q--AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSS 108 (138)
T ss_dssp --------------------H--CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEEC
T ss_pred --------------------H--cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 1 14446779999776655566677777643 56779998875
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.001 Score=63.58 Aligned_cols=132 Identities=16% Similarity=0.183 Sum_probs=71.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
++++|.+...+.|..++.... -.+.+.++|+.|+|||++|+.+....--....+ ..+++.-.....+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 569999999999999887643 245677899999999999988865211000000 00000000111111
Q ss_pred HHhcCC-----C---CCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 249 EALDGH-----E---SHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 249 ~~~~~~-----~---~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
...... . ....+++++.+.+... ..++.-++|||++.......++.|...+...+....+|++|
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlat 156 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILAT 156 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 100000 0 0111223333333211 24567789999997765556778887776554455555544
No 143
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.58 E-value=0.00068 Score=57.06 Aligned_cols=89 Identities=20% Similarity=0.155 Sum_probs=55.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcC------ceeEEEEcCccccHHHHHHHHHHHhcCCC---------CCC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF------DKILWVCVSETFEEFRVAKAMVEALDGHE---------SHL 258 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~---------~~~ 258 (314)
+.-.++.|+|.+|+|||+|+..++... .... ..++|++....++...+. .+........ ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 456799999999999999999886532 2222 567899988777765543 3333322110 011
Q ss_pred CcHHHHHHHHHHHc----cCceEEEEEeccc
Q 048765 259 GEFQSLLRHIYESI----AGKSFLLVLDDVW 285 (314)
Q Consensus 259 ~~~~~~~~~l~~~L----~~kr~LlVlDdv~ 285 (314)
.+..++...+...+ ..+--|||+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 23444444444433 2455699999984
No 144
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.58 E-value=0.00066 Score=56.86 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=52.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHh----cCC--CCCCCcH---HHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEAL----DGH--ESHLGEF---QSL 264 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~----~~~--~~~~~~~---~~~ 264 (314)
..-.++.|.|.+|+||||++.+++.. ....-..++|++....+. +-+.+++... ... .....+. ...
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRA 92 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHH
Confidence 45678999999999999999998763 223345678888765543 2233333221 000 0011222 223
Q ss_pred HHHHHHHccCceEEEEEeccc
Q 048765 265 LRHIYESIAGKSFLLVLDDVW 285 (314)
Q Consensus 265 ~~~l~~~L~~kr~LlVlDdv~ 285 (314)
...+...+..+.-+||+|.+-
T Consensus 93 ~~~~~~~~~~~~~lvvIDsi~ 113 (218)
T cd01394 93 IQETETFADEKVDLVVVDSAT 113 (218)
T ss_pred HHHHHHHHhcCCcEEEEechH
Confidence 344555555556799999984
No 145
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.57 E-value=0.0012 Score=65.44 Aligned_cols=50 Identities=28% Similarity=0.355 Sum_probs=38.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+|.+.-.+.++++|.........+..++.++|++|+||||+++.++.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999888742221113445789999999999999999986
No 146
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.57 E-value=0.00019 Score=52.95 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=18.5
Q ss_pred EEEEccCCCChHHHHHHhhch
Q 048765 199 ISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~ 219 (314)
|-|+|.+|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999998773
No 147
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.56 E-value=0.00037 Score=59.85 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=75.6
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEE-EEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILW-VCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~w-v~~~~~~~~~~~~~~i 247 (314)
.+++|.+..+.-|.+.+.. ....+...+|++|.|||+.|+.++...--.+.|.+.+- .++|...... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 4688888888888888876 24678899999999999999887653211344544432 3344332211 0000
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHc--cCce-EEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 248 VEALDGHESHLGEFQSLLRHIYESI--AGKS-FLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
...+...+........ .-++ -.||||+++....+.|..|...+.+-...++.|+++
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc
Confidence 0011111111010000 1122 488999999888889999999887655566655543
No 148
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.55 E-value=0.00065 Score=60.79 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=63.0
Q ss_pred HHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCce-eEEEEcCc-cccHHHHHHHHHHHhcCCC
Q 048765 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDK-ILWVCVSE-TFEEFRVAKAMVEALDGHE 255 (314)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~~~~-~~~~~~~~~~i~~~~~~~~ 255 (314)
..++++.+..-. +-.-+.|+|.+|+|||||++.+++.... ++-+. ++|+-+.+ ...+.++.+.+...+....
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 345777765432 2345689999999999999998874321 23344 46666654 4466788888877665432
Q ss_pred CCCCcHH-----HHHHHHHHHc--cCceEEEEEeccc
Q 048765 256 SHLGEFQ-----SLLRHIYESI--AGKSFLLVLDDVW 285 (314)
Q Consensus 256 ~~~~~~~-----~~~~~l~~~L--~~kr~LlVlDdv~ 285 (314)
.+..... .....+.+++ +++..+||+|++-
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 2111111 1222333333 6899999999993
No 149
>PRK06620 hypothetical protein; Validated
Probab=97.54 E-value=0.00015 Score=60.46 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+.|+|++|+|||+|++.+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~ 66 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQN 66 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHh
Confidence 6789999999999999998766
No 150
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.53 E-value=0.00029 Score=70.65 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++||+.++.++++.|.... ...+.++|++|+|||+||+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997643 345669999999999999988763
No 151
>PHA00729 NTP-binding motif containing protein
Probab=97.49 E-value=0.0017 Score=54.14 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999773
No 152
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.49 E-value=0.0001 Score=59.24 Aligned_cols=90 Identities=19% Similarity=0.196 Sum_probs=55.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhh-hcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVI-RKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (314)
..++.+.|+.|+|||.||+.+.. ... +.....+-++++......+.-..+...++... .... ..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~---~~v~----------~~ 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPP---GYVG----------AE 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTT---CHHH----------HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccccchHHhhhhhhhhccc---ceee----------cc
Confidence 56888999999999999999987 333 44556777787765542221111111111110 0000 00
Q ss_pred ceEEEEEeccccCCc-----------cCHHhHHHhhc
Q 048765 275 KSFLLVLDDVWDGNY-----------VKWEPFYHCLK 300 (314)
Q Consensus 275 kr~LlVlDdv~~~~~-----------~~~~~l~~~l~ 300 (314)
..-+|+||++.+... ..|+.|...+.
T Consensus 68 ~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 112999999998876 66888888775
No 153
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.47 E-value=0.00066 Score=59.87 Aligned_cols=85 Identities=21% Similarity=0.165 Sum_probs=56.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHE-----SHLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~l 268 (314)
+.-+++-|+|++|+|||||+..++.. ....-..++|++..+.++.. .+++++... ......++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45679999999999999999888763 33344668899887766653 344444321 1223344455555
Q ss_pred HHHc-cCceEEEEEeccc
Q 048765 269 YESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 269 ~~~L-~~kr~LlVlDdv~ 285 (314)
...+ .+.--+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 5544 3567799999984
No 154
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.45 E-value=0.00081 Score=58.74 Aligned_cols=21 Identities=38% Similarity=0.446 Sum_probs=18.6
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-+.++|++|+|||++|+.++.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 577999999999999988766
No 155
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0013 Score=58.67 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=69.1
Q ss_pred cccc-chhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh--------------------cCce
Q 048765 170 EICG-RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR--------------------KFDK 228 (314)
Q Consensus 170 ~~vg-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------------------~F~~ 228 (314)
.++| .+.-.+.|...+... .-.....++|+.|+|||++|+.+....--.. |.|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 455566666666542 2355678999999999999988755210000 1121
Q ss_pred eEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhccCCCCce
Q 048765 229 ILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSK 307 (314)
Q Consensus 229 ~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 307 (314)
.....-+... ..+++.++.+.+.. -..+.+-++|||++...+....+.|...+...+.++.
T Consensus 81 ~~i~~~~~~i------------------~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~ 142 (329)
T PRK08058 81 HLVAPDGQSI------------------KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTT 142 (329)
T ss_pred EEeccccccC------------------CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCce
Confidence 1110000000 11122222222221 1245667899999987766677788888887777777
Q ss_pred EEEecc
Q 048765 308 ILVTTR 313 (314)
Q Consensus 308 iivTtR 313 (314)
+|++|.
T Consensus 143 ~Il~t~ 148 (329)
T PRK08058 143 AILLTE 148 (329)
T ss_pred EEEEeC
Confidence 887775
No 156
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0029 Score=58.34 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=27.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
.+++.++|++|+||||++..++........-..+..|++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D 260 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD 260 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4689999999999999998886633211223456666654
No 157
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.44 E-value=0.0017 Score=59.28 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=35.2
Q ss_pred cccccchhhHHHHHHHhhcc---Cc----CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCE---SS----EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++.|.+...+.|.+.+... .. .+-...+-+.++|++|+|||+||+.+++
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46788888777776654311 00 0113456788999999999999999987
No 158
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.43 E-value=0.0012 Score=56.77 Aligned_cols=89 Identities=25% Similarity=0.301 Sum_probs=56.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhh----hcCceeEEEEcCccccHHHHHHHHHHHhcCCC------------CCC
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVI----RKFDKILWVCVSETFEEFRVAKAMVEALDGHE------------SHL 258 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------~~~ 258 (314)
.-.+.=|+|.+|+|||.|+..++-..... +.-..++|++....|....+. +|++..+... .+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 34577899999999999998775432221 223579999999999887764 4666543321 112
Q ss_pred CcHHHHHHHHHHHc-cCceEEEEEecc
Q 048765 259 GEFQSLLRHIYESI-AGKSFLLVLDDV 284 (314)
Q Consensus 259 ~~~~~~~~~l~~~L-~~kr~LlVlDdv 284 (314)
.+...++..+...+ +.+--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 22334444444444 456679999998
No 159
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.43 E-value=0.0014 Score=51.65 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=64.6
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc---cccHHHHHHHHHHHh-----cCC----CCCC-Cc---
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE---TFEEFRVAKAMVEAL-----DGH----ESHL-GE--- 260 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~~~-----~~~----~~~~-~~--- 260 (314)
..|-|++-.|.||||+|....- +...+=-.+.++..-+ ......++..+- .+ +.. ..+. .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999977755 3334433455544322 233333333330 00 000 0000 11
Q ss_pred HHHHHHHHHHHcc-CceEEEEEecccc---CCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 261 FQSLLRHIYESIA-GKSFLLVLDDVWD---GNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 261 ~~~~~~~l~~~L~-~kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
.....+..++.+. ++-=|||||++-. ....+.+++...+...+.+.-||+|.|+
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~ 137 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRN 137 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 1223333444553 4556999999833 2224567888888777777789999986
No 160
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.42 E-value=0.00056 Score=64.05 Aligned_cols=51 Identities=20% Similarity=0.186 Sum_probs=35.8
Q ss_pred cccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..+.|.+..++.+.+.+...-.. .-...+-+.++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 45778888888877765321000 1123456889999999999999999884
No 161
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.42 E-value=0.0018 Score=57.14 Aligned_cols=131 Identities=24% Similarity=0.284 Sum_probs=68.8
Q ss_pred ccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh-hhhcCceeEE----EEcCccc--------
Q 048765 172 CGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE-VIRKFDKILW----VCVSETF-------- 238 (314)
Q Consensus 172 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~~~F~~~~w----v~~~~~~-------- 238 (314)
-+|..+..--++.|+.+ ....|++.|.+|+|||-||-...-..- .+..|..++- +.++++.
T Consensus 227 ~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 34566666666777764 488999999999999999966533211 2334433222 2233321
Q ss_pred -----cHHHHHHHHHHHhcCCCCCCCcHHHHHHH--H----HHHccCc---eEEEEEeccccCCccCHHhHHHhhccCCC
Q 048765 239 -----EEFRVAKAMVEALDGHESHLGEFQSLLRH--I----YESIAGK---SFLLVLDDVWDGNYVKWEPFYHCLKNGLH 304 (314)
Q Consensus 239 -----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--l----~~~L~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 304 (314)
-+..+...+---+....+....+..+..+ | ..+++|+ .-+||+|.+.+.. -.+++..+-..+.
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT---pheikTiltR~G~ 377 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT---PHELKTILTRAGE 377 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC---HHHHHHHHHhccC
Confidence 11112111111111111111111111100 0 0233443 4689999997753 3666666777788
Q ss_pred CceEEEe
Q 048765 305 GSKILVT 311 (314)
Q Consensus 305 gs~iivT 311 (314)
||||++|
T Consensus 378 GsKIVl~ 384 (436)
T COG1875 378 GSKIVLT 384 (436)
T ss_pred CCEEEEc
Confidence 9999987
No 162
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.41 E-value=0.0012 Score=57.69 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=47.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc-ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET-FEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
...++.++|+.|+||||++..++........-..+..|++... ......+....+.++.......+..++...+.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~-~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR-LR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH-cc
Confidence 4679999999999999999998774433211124555665331 123334444444444322222333344444433 33
Q ss_pred CceEEEEEecc
Q 048765 274 GKSFLLVLDDV 284 (314)
Q Consensus 274 ~kr~LlVlDdv 284 (314)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 163
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.41 E-value=0.00089 Score=59.10 Aligned_cols=85 Identities=22% Similarity=0.182 Sum_probs=56.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHE-----SHLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~l 268 (314)
+.-+++-|+|++|+|||||+..++.. ....-..++|++....+++. .++.++... ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45678889999999999999988763 33445678899987776653 334443321 1223344455555
Q ss_pred HHHc-cCceEEEEEeccc
Q 048765 269 YESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 269 ~~~L-~~kr~LlVlDdv~ 285 (314)
...+ .+.--+||+|.|-
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 5544 4566799999984
No 164
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.41 E-value=0.00057 Score=68.69 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=37.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++||+.++.+++..|.... ...+.++|++|+|||++++.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 459999999999999996643 345568999999999999988773
No 165
>CHL00181 cbbX CbbX; Provisional
Probab=97.40 E-value=0.0013 Score=57.51 Aligned_cols=23 Identities=35% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..+.++|++|+||||+|+.++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999763
No 166
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.39 E-value=0.00036 Score=59.32 Aligned_cols=50 Identities=28% Similarity=0.430 Sum_probs=39.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+|+|.+.-.++|.-++.... .....+..+.++|++|.||||||.-+++.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk-~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAK-KRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHH-hcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 579998887777766654322 13367889999999999999999999883
No 167
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.39 E-value=0.0012 Score=58.24 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=58.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhh----hcCceeEEEEcCccccHHHHHHHHHHHhcCCCC---------CCCc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVI----RKFDKILWVCVSETFEEFRVAKAMVEALDGHES---------HLGE 260 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~ 260 (314)
+.-.++-|+|++|+|||+|+..++-..... ..-..++||+....|+++.+.. +++.++.... ...+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCC
Confidence 456788899999999999998876432221 1224789999999888888754 5666544321 1112
Q ss_pred HH---HHHHHHHHHc-cCceEEEEEeccc
Q 048765 261 FQ---SLLRHIYESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 261 ~~---~~~~~l~~~L-~~kr~LlVlDdv~ 285 (314)
.+ +++..+...+ ..+--|||+|.+-
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 22 3334444444 3456689999984
No 168
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.39 E-value=0.0016 Score=59.58 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=54.9
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceE
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSF 277 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~ 277 (314)
++.|.|+.++||||+++.+... .. +..++++.-+......-+.+... .+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~---~~~iy~~~~d~~~~~~~l~d~~~-----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LL---EEIIYINFDDLRLDRIELLDLLR-----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CC---cceEEEEecchhcchhhHHHHHH-----------------HHHHhhccCCc
Confidence 9999999999999999655442 11 11455543222111111111111 11111122788
Q ss_pred EEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 278 LLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 278 LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
+|+||.|... ..|......+.+..+. +|++|+-
T Consensus 97 yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgs 129 (398)
T COG1373 97 YIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGS 129 (398)
T ss_pred eEEEecccCc--hhHHHHHHHHHccccc-eEEEECC
Confidence 9999999766 6799988888876555 7888864
No 169
>PRK09354 recA recombinase A; Provisional
Probab=97.39 E-value=0.001 Score=59.18 Aligned_cols=85 Identities=22% Similarity=0.182 Sum_probs=57.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHE-----SHLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~l 268 (314)
+.-+++-|+|++|+|||||+.+++. .....-..++||+....++.. .+++++... ......++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4567889999999999999998876 333445678999988877753 344444321 1222344455555
Q ss_pred HHHc-cCceEEEEEeccc
Q 048765 269 YESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 269 ~~~L-~~kr~LlVlDdv~ 285 (314)
...+ .++--+||+|.|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 5554 4567799999985
No 170
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.38 E-value=0.0013 Score=54.09 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=33.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc-cccHHHHHHHHHHHhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE-TFEEFRVAKAMVEALD 252 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~ 252 (314)
++++.++|+.|+||||.+-+++.....+ -..+..+++.. .....+-++..++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhc
Confidence 3689999999999999998887644333 33455555422 2233444455555443
No 171
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.37 E-value=0.00029 Score=58.02 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=48.8
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-c---
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES-I--- 272 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L--- 272 (314)
++..|.|.+|+||||+++.+.......+ ..+.+..........+ .+..+.. ...+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~L----~~~~~~~---a~Ti~~~l~~~~~~~~~~~ 88 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKEL----REKTGIE---AQTIHSFLYRIPNGDDEGR 88 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHHH----HHHHTS----EEEHHHHTTEECCEECCSS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHHH----HHhhCcc---hhhHHHHHhcCCccccccc
Confidence 5788899999999999998876433321 2333333322222222 2222211 01111000000000 0
Q ss_pred --cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEe
Q 048765 273 --AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVT 311 (314)
Q Consensus 273 --~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 311 (314)
..+.-+||+|++.-.+...+..|....+. .|+|+|+.
T Consensus 89 ~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 89 PELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp CC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEE
T ss_pred ccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEE
Confidence 12335999999976544445555554443 47788764
No 172
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.37 E-value=0.00014 Score=54.75 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.|.|++|+||||+|+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00025 Score=69.73 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=36.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++||+.+++.+++.|.... ...+.++|++|+|||++|+.++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999887633 23446899999999999999876
No 174
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.36 E-value=0.0024 Score=54.10 Aligned_cols=87 Identities=21% Similarity=0.175 Sum_probs=55.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCC------------------
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHE------------------ 255 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------------ 255 (314)
+.-.++.|+|.+|+|||+|+.++... ....=..++|++..+. +..+.+.+. +++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~--~~~~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYG--ALKQGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHH--HHhCCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 55679999999999999999998642 1123457888988654 445555432 222110
Q ss_pred --CCCCcHHHHHHHHHHHccC-ceEEEEEeccc
Q 048765 256 --SHLGEFQSLLRHIYESIAG-KSFLLVLDDVW 285 (314)
Q Consensus 256 --~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 285 (314)
....+...+...+...+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666643 56689999985
No 175
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.34 E-value=0.00052 Score=54.98 Aligned_cols=126 Identities=19% Similarity=0.148 Sum_probs=66.7
Q ss_pred cccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHH
Q 048765 171 ICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEA 250 (314)
Q Consensus 171 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 250 (314)
++|....+.++.+.+..-.. ...-|.|+|..|+||+.+|+.+++. ....-.+-+-|+|+.- +.+.+ -..
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~--s~r~~~pfi~vnc~~~-~~~~~----e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNN--SPRKNGPFISVNCAAL-PEELL----ESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHC--STTTTS-EEEEETTTS--HHHH----HHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHh--hhcccCCeEEEehhhh-hcchh----hhh
Confidence 46777777777777655332 2345669999999999999999873 2222334456667643 22222 222
Q ss_pred h-cCCCC---CC-CcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccC---CC--------CceEEEecc
Q 048765 251 L-DGHES---HL-GEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG---LH--------GSKILVTTR 313 (314)
Q Consensus 251 ~-~~~~~---~~-~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~---~~--------gs~iivTtR 313 (314)
+ +.... .. ..... .+. +...=-|+||++.......-..|..++..+ .. ..|||.||.
T Consensus 70 LFG~~~~~~~~~~~~~~G---~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKG---LLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS 142 (168)
T ss_dssp HHEBCSSSSTTTSSEBEH---HHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES
T ss_pred hhccccccccccccccCC---cee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecC
Confidence 2 22111 00 00001 111 233447889999876544445566666532 11 357888875
No 176
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.29 E-value=0.00072 Score=64.41 Aligned_cols=88 Identities=18% Similarity=0.262 Sum_probs=58.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
+..+++.++|++|.||||||.-++.+. -| .++=|++|+..++..+-..|...+........ .
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------d 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------D 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhcccccc-------------C
Confidence 557899999999999999998887632 22 36778899988888877777766643321100 2
Q ss_pred CceEEEEEeccccCCccCHHhHHHhh
Q 048765 274 GKSFLLVLDDVWDGNYVKWEPFYHCL 299 (314)
Q Consensus 274 ~kr~LlVlDdv~~~~~~~~~~l~~~l 299 (314)
++...||+|.++-......+.|...+
T Consensus 386 srP~CLViDEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVILSLV 411 (877)
T ss_pred CCcceEEEecccCCcHHHHHHHHHHH
Confidence 56778899999643211234444443
No 177
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.29 E-value=0.002 Score=57.55 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=57.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhh----hcCceeEEEEcCccccHHHHHHHHHHHhcCCCC---------CCCc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVI----RKFDKILWVCVSETFEEFRVAKAMVEALDGHES---------HLGE 260 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~ 260 (314)
..-.++-|+|.+|+|||+|+..++-..... ..-..++|++....|.++.+ .+|++.++.... ...+
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~ 199 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYN 199 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCC
Confidence 456788899999999999998776532211 11237999999999988776 455666544321 1122
Q ss_pred HHHH---HHHHHHHc-cCceEEEEEeccc
Q 048765 261 FQSL---LRHIYESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 261 ~~~~---~~~l~~~L-~~kr~LlVlDdv~ 285 (314)
...+ +..+...+ ..+--|||+|.+-
T Consensus 200 ~e~~~~ll~~~~~~~~~~~~~LIVIDSI~ 228 (342)
T PLN03186 200 TDHQSELLLEAASMMAETRFALMIVDSAT 228 (342)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEeCcH
Confidence 3332 33333333 4466799999984
No 178
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0057 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|+++|++|+||||++..++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999876
No 179
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0038 Score=56.71 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=48.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhh--hcCceeEEEEcCcc-ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVI--RKFDKILWVCVSET-FEEFRVAKAMVEALDGHESHLGEFQSLLRHIYES 271 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 271 (314)
...++.++|+.|+||||.+.+++...... .+-..+..+++... .....-+....+.++.......+..++...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35799999999999999999887643322 12234555554321 1223335555555544222222333333333322
Q ss_pred ccCceEEEEEecccc
Q 048765 272 IAGKSFLLVLDDVWD 286 (314)
Q Consensus 272 L~~kr~LlVlDdv~~ 286 (314)
.+.-+|++|....
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3345667777643
No 180
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.26 E-value=0.003 Score=56.00 Aligned_cols=91 Identities=21% Similarity=0.171 Sum_probs=56.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhh----cCceeEEEEcCccccHHHHHHHHHHHhcCCCC---------CCCc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIR----KFDKILWVCVSETFEEFRVAKAMVEALDGHES---------HLGE 260 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~ 260 (314)
+.-.++.|+|.+|+|||+|+..++....... .-..++|++....+....+ .++++.++.... ...+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~~~~~l~~i~~~~~~~ 172 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLNPEDVLDNVAYARAYN 172 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCChHHhhccEEEEecCC
Confidence 4578999999999999999988865322211 1236799999887777764 344555433211 0112
Q ss_pred HH---HHHHHHHHHc-cCceEEEEEeccc
Q 048765 261 FQ---SLLRHIYESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 261 ~~---~~~~~l~~~L-~~kr~LlVlDdv~ 285 (314)
.. .+...+...+ ..+--|||+|.+-
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~LvVIDSI~ 201 (316)
T TIGR02239 173 TDHQLQLLQQAAAMMSESRFALLIVDSAT 201 (316)
T ss_pred hHHHHHHHHHHHHhhccCCccEEEEECcH
Confidence 22 2333344444 3456799999984
No 181
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0025 Score=56.75 Aligned_cols=42 Identities=10% Similarity=0.123 Sum_probs=32.2
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
.+++-++|||++...+....+.|...+..-+.++.+|+||.+
T Consensus 104 ~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECC
Confidence 345556678999988877888898888876667778888753
No 182
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0021 Score=55.52 Aligned_cols=91 Identities=24% Similarity=0.173 Sum_probs=60.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcC---C-CCCCCcHHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDG---H-ESHLGEFQSLLRHIY 269 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~~~~~l~ 269 (314)
+.-.++=|+|+.|+||||+|.+++- ..+..-..++|++.-..+++..+..-..+.+.. . +.+.....++++.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 5567888999999999999988866 445555689999999999888754333221211 1 122222334455555
Q ss_pred HHccCceEEEEEecccc
Q 048765 270 ESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 270 ~~L~~kr~LlVlDdv~~ 286 (314)
.....+--|||+|.+-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 55444577999999843
No 183
>PRK06696 uridine kinase; Validated
Probab=97.23 E-value=0.0012 Score=55.56 Aligned_cols=43 Identities=26% Similarity=0.233 Sum_probs=34.0
Q ss_pred chhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
|.+.++.|.+.+..... ....+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 56667777777765332 46789999999999999999999873
No 184
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.23 E-value=0.0021 Score=55.28 Aligned_cols=87 Identities=20% Similarity=0.171 Sum_probs=52.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcC-ceeEEEEcCcccc-HHHHHHHHHHHhcCC--------CCCCCcHH---
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKF-DKILWVCVSETFE-EFRVAKAMVEALDGH--------ESHLGEFQ--- 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~-~~~~~~~i~~~~~~~--------~~~~~~~~--- 262 (314)
-.-++|+|..|+|||+|++.+++. ...+| +.++++-+.+... +.++...+...-... .......+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 457889999999999999999984 44445 4566666766443 344555544321111 01111111
Q ss_pred -HHHHHHHHHc--c-CceEEEEEecc
Q 048765 263 -SLLRHIYESI--A-GKSFLLVLDDV 284 (314)
Q Consensus 263 -~~~~~l~~~L--~-~kr~LlVlDdv 284 (314)
...-.+.+++ + ++..||++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1223345555 4 89999999999
No 185
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.22 E-value=0.0017 Score=65.02 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=39.1
Q ss_pred cccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 171 ICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 171 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++||+.+++.|...+..-.. ....++.+.|..|+|||+|++.|..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH
Confidence 78999999999998876543 4566999999999999999999976
No 186
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0029 Score=57.59 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...++.++|++|+||||++.+++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999763
No 187
>CHL00176 ftsH cell division protein; Validated
Probab=97.19 E-value=0.0024 Score=61.84 Aligned_cols=50 Identities=30% Similarity=0.261 Sum_probs=32.6
Q ss_pred cccccchhhHHH---HHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNE---LLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~---l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++.|.++..+. ++.+|.....- .....+-+.++|++|+|||+||+.++.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 457776655444 44444432210 112345688999999999999999987
No 188
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.19 E-value=0.0032 Score=56.19 Aligned_cols=91 Identities=21% Similarity=0.236 Sum_probs=58.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhh----hhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC---------CCCc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEV----IRKFDKILWVCVSETFEEFRVAKAMVEALDGHES---------HLGE 260 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~ 260 (314)
+.-.++-|+|.+|+|||+|+..++-.... ...-..++||+....|+++.+.. +++.++.... ...+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 44578889999999999999888643222 11225789999999999888654 5555544321 1122
Q ss_pred HHH---HHHHHHHHc-cCceEEEEEeccc
Q 048765 261 FQS---LLRHIYESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 261 ~~~---~~~~l~~~L-~~kr~LlVlDdv~ 285 (314)
.++ +...+...+ ..+--|||+|.+-
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 332 333333334 3445689999984
No 189
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=97.18 E-value=0.0021 Score=57.39 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=72.0
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
.++|....+..+.+.+..-. ..-.-|.|+|..|+||+++|+.++.. ....-...+.|+|.... . ..+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~--s~r~~~pfv~v~c~~~~-~-~~~~~--- 75 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYL--SSRWQGPFISLNCAALN-E-NLLDS--- 75 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh--CCccCCCeEEEeCCCCC-H-HHHHH---
Confidence 58899888888888776543 23456789999999999999999752 11112344556666532 2 22221
Q ss_pred HhcCCCC-C-CCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCC----C-------CceEEEecc
Q 048765 250 ALDGHES-H-LGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL----H-------GSKILVTTR 313 (314)
Q Consensus 250 ~~~~~~~-~-~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~-------gs~iivTtR 313 (314)
.+.+... . ..........+ -....=.|+||+|..........|...+..+. . ..+||.||.
T Consensus 76 ~lfg~~~~~~~g~~~~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~ 149 (326)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATN 149 (326)
T ss_pred HHccccccccCCcccccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCc
Confidence 1211110 0 00000000111 12233458899998765455666777775431 1 247888763
No 190
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0035 Score=62.00 Aligned_cols=122 Identities=13% Similarity=0.189 Sum_probs=73.7
Q ss_pred ccccchhhHHHHHHHhhccCcCCC--CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQ--KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
.++|.++.+..+.+.+.....+-. ....-+.+.|+.|+|||.||+.+.. -+-+..+..+-+++|+... +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~~e-------v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEFQE-------V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhhhh-------h
Confidence 577778888888877765432211 2456667899999999999999977 3434444555555554322 2
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHccCce-EEEEEeccccCCccCHHhHHHhhccC
Q 048765 248 VEALDGHESHLGEFQSLLRHIYESIAGKS-FLLVLDDVWDGNYVKWEPFYHCLKNG 302 (314)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~ 302 (314)
.+.++.++.-.. .+....|.+.++.+. .+|.||||...+......+...+.++
T Consensus 634 skligsp~gyvG--~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 634 SKLIGSPPGYVG--KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhccCCCccccc--chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 333333221111 112235566665555 57889999887666666666666543
No 191
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0031 Score=59.04 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.-.+++|+|+.|+||||++.++...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 192
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.16 E-value=0.0078 Score=55.59 Aligned_cols=58 Identities=22% Similarity=0.202 Sum_probs=35.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc-cccHHHHHHHHHHHhcC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE-TFEEFRVAKAMVEALDG 253 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~ 253 (314)
....++.++|.+|+||||++..++...... .+ .+..|++.. .....+.+..+.++++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 357899999999999999999998743322 22 344444422 11234455556665543
No 193
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.15 E-value=0.0049 Score=49.54 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988763
No 194
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.14 E-value=0.0042 Score=55.02 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhh----hcCceeEEEEcCccccHHHHHHHHHHHhcCCCC------------C
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVI----RKFDKILWVCVSETFEEFRVAKAMVEALDGHES------------H 257 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------~ 257 (314)
+.-.++-|+|.+|+|||+++.+++...... ..-..++||+....++...+. ++++.++.... .
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCC
Confidence 446788999999999999999887542221 011379999999888887654 34444432210 0
Q ss_pred CCcHHHHHHHHHHHccC---ceEEEEEecccc
Q 048765 258 LGEFQSLLRHIYESIAG---KSFLLVLDDVWD 286 (314)
Q Consensus 258 ~~~~~~~~~~l~~~L~~---kr~LlVlDdv~~ 286 (314)
......+.+.+.+.+.. +.-+||+|.+-.
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa 203 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTS 203 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence 01111234455555533 245999999843
No 195
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.0054 Score=54.28 Aligned_cols=138 Identities=12% Similarity=0.115 Sum_probs=75.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh--------------hhhcCceeEEEEc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE--------------VIRKFDKILWVCV 234 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~--------------~~~~F~~~~wv~~ 234 (314)
+.++|.+...+.+...+.... -.....++|+.|+||+++|..+....- ...|.| ..|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEec
Confidence 458899999999998886532 246888999999999999977754210 011222 233321
Q ss_pred CccccHHHHHHHHHHHhcC--CC-CC--CCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceE
Q 048765 235 SETFEEFRVAKAMVEALDG--HE-SH--LGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~~--~~-~~--~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 308 (314)
........+-...+...+. .. .. .+..+++...+... ..+++-++|||++...+....+.|...+...+ .+.+
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 1000000000011111110 00 00 11222222222211 24677899999998877677888988887555 4456
Q ss_pred EEecc
Q 048765 309 LVTTR 313 (314)
Q Consensus 309 ivTtR 313 (314)
|++|.
T Consensus 157 ILi~~ 161 (314)
T PRK07399 157 ILIAP 161 (314)
T ss_pred EEEEC
Confidence 66653
No 196
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.14 E-value=0.004 Score=50.48 Aligned_cols=115 Identities=15% Similarity=0.157 Sum_probs=60.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE---cCccccHHHH------HHHHHHHhcCCC------CCCCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC---VSETFEEFRV------AKAMVEALDGHE------SHLGE 260 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~---~~~~~~~~~~------~~~i~~~~~~~~------~~~~~ 260 (314)
-.+++|+|..|+|||||.+.++... ......++++ +.. .+.... ..++++.++... ...+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4589999999999999999997632 2334444443 221 111111 112344443321 11111
Q ss_pred HHHHHHHHHHHccCceEEEEEecccc-CCccCHHhHHHhhccC-CC-CceEEEeccC
Q 048765 261 FQSLLRHIYESIAGKSFLLVLDDVWD-GNYVKWEPFYHCLKNG-LH-GSKILVTTRK 314 (314)
Q Consensus 261 ~~~~~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~iivTtR~ 314 (314)
-+...-.+...|-..+-++++|+--. .|....+.+...+... .. |..||++|.+
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 11112223444556778899999632 2323344555555432 22 5678888763
No 197
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.13 E-value=0.0051 Score=54.66 Aligned_cols=91 Identities=21% Similarity=0.201 Sum_probs=57.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhh----cCceeEEEEcCccccHHHHHHHHHHHhcCCCC------------C
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIR----KFDKILWVCVSETFEEFRVAKAMVEALDGHES------------H 257 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------~ 257 (314)
+.-.++-|+|++|+|||+++.+++....... .=..++||+....+++..+.. +++.++.... .
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~~~~~~l~~i~~~~~~~ 178 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGLDPDEVLDNIHVARAYN 178 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCCChHhhhccEEEEeCCC
Confidence 4567888999999999999998875322111 114799999998888877644 3444433211 1
Q ss_pred CCcHHHHHHHHHHHccC--ceEEEEEeccc
Q 048765 258 LGEFQSLLRHIYESIAG--KSFLLVLDDVW 285 (314)
Q Consensus 258 ~~~~~~~~~~l~~~L~~--kr~LlVlDdv~ 285 (314)
......+...+...+.. +--|||+|.+-
T Consensus 179 ~~~~~~~~~~l~~~i~~~~~~~lvVIDSis 208 (317)
T PRK04301 179 SDHQMLLAEKAEELIKEGENIKLVIVDSLT 208 (317)
T ss_pred HHHHHHHHHHHHHHHhccCceeEEEEECch
Confidence 11112334555565543 45599999984
No 198
>PRK10867 signal recognition particle protein; Provisional
Probab=97.13 E-value=0.006 Score=56.22 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=21.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|.++|++|+||||++.+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3468999999999999998877765
No 199
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.13 E-value=0.0043 Score=54.19 Aligned_cols=140 Identities=20% Similarity=0.195 Sum_probs=77.6
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcC-ceeEEEEcCccccHH-HHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF-DKILWVCVSETFEEF-RVAKA 246 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~-~~~~~ 246 (314)
..++|-.++..++-.++...... +...-+.|+|+.|+|||+|......+ ...| +-.+-|........+ -.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 34888888888888887654322 33456789999999999999888775 2223 223334444433222 23455
Q ss_pred HHHHhcC----CCCCCCcHHHHHHHHHHHcc------CceEEEEEeccccCCcc-CHHhHHHhhc----cCCCCceEEEe
Q 048765 247 MVEALDG----HESHLGEFQSLLRHIYESIA------GKSFLLVLDDVWDGNYV-KWEPFYHCLK----NGLHGSKILVT 311 (314)
Q Consensus 247 i~~~~~~----~~~~~~~~~~~~~~l~~~L~------~kr~LlVlDdv~~~~~~-~~~~l~~~l~----~~~~gs~iivT 311 (314)
|.+++.. ......+..+....+.+.|+ +-+.++|+|.++-.... .-..+...|. ...|-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 5555432 21122233333444444442 23578888887543211 1123444443 12455666777
Q ss_pred cc
Q 048765 312 TR 313 (314)
Q Consensus 312 tR 313 (314)
||
T Consensus 179 tr 180 (408)
T KOG2228|consen 179 TR 180 (408)
T ss_pred cc
Confidence 76
No 200
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.12 E-value=0.003 Score=56.95 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=35.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc-cccHHHHHHHHHHHhcC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE-TFEEFRVAKAMVEALDG 253 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~ 253 (314)
-.++.++|+.|+||||++.++............+..++... .....+-++...+.++.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence 46899999999999999999987432221123455555422 22344455555555543
No 201
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=97.12 E-value=0.0023 Score=63.07 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=73.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|....+..+.+.+..-. ..-.-|.|+|..|+|||++|+.++... ...-...+.++|.... . ..+...+
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s--~r~~~~~v~i~c~~~~-~-~~~~~~l 447 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLS--GRNNRRMVKMNCAAMP-A-GLLESDL 447 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhc--CCCCCCeEEEecccCC-h-hHhhhhh
Confidence 468999888888877665433 234578899999999999999997732 2222345566665432 1 2211111
Q ss_pred HHhcCCCCC-CCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCC-----------CCceEEEecc
Q 048765 249 EALDGHESH-LGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL-----------HGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~~~~~-~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 313 (314)
++..... ..........+ -....=.|+||+|..........|...+..+. ...|||.||.
T Consensus 448 --fg~~~~~~~g~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 519 (686)
T PRK15429 448 --FGHERGAFTGASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 519 (686)
T ss_pred --cCcccccccccccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCC
Confidence 1111000 00000011111 12234579999998765455566777775331 2348888874
No 202
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.11 E-value=0.0065 Score=54.09 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=32.1
Q ss_pred hhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh
Q 048765 176 GEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE 221 (314)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 221 (314)
.-.+.|.+.+..... ....+|+|.|.=|+|||++.+.+....+
T Consensus 3 ~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 3 PYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred HHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344566666665432 4578999999999999999999977443
No 203
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.10 E-value=0.0014 Score=54.00 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=51.5
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE-cCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC-VSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
.++.|+|+.|+||||+++.+... ...+....++.- -+..+.... ...+..+-. ...+.....+.++..|...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t~e~~~E~~~~~-~~~~i~q~~----vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILTIEDPIEFVHES-KRSLINQRE----VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEEEcCCccccccC-ccceeeecc----cCCCccCHHHHHHHHhcCC
Confidence 47899999999999999887663 222333333321 111110000 000111100 0011122344566666666
Q ss_pred eEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 276 SFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.=+|++|++.+. +....+.... ..|..++.|+.
T Consensus 75 pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~H 107 (198)
T cd01131 75 PDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLH 107 (198)
T ss_pred cCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEec
Confidence 779999999543 2333322222 23555666653
No 204
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.10 E-value=0.0071 Score=55.70 Aligned_cols=26 Identities=35% Similarity=0.382 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+..++.++|.+|+||||++..++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34679999999999999998887664
No 205
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.10 E-value=0.0021 Score=54.16 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=39.2
Q ss_pred cccccchhhHH---HHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKN---ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++++|.++... -|++.|...+.=+....+.|..+|++|.|||.+|+.+.+.
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane 174 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANE 174 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcc
Confidence 56888876654 3667776544334566889999999999999999999983
No 206
>PTZ00035 Rad51 protein; Provisional
Probab=97.10 E-value=0.0053 Score=54.90 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=56.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhh----hhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC---------CCCc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEV----IRKFDKILWVCVSETFEEFRVAKAMVEALDGHES---------HLGE 260 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~ 260 (314)
+.-.++.|+|.+|+|||+|+..++-.... ...-..++|++....++++.+ .++++.++.... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 45678999999999999999888653221 012245779998887777764 444555443211 1112
Q ss_pred HHHH---HHHHHHHc-cCceEEEEEecccc
Q 048765 261 FQSL---LRHIYESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 261 ~~~~---~~~l~~~L-~~kr~LlVlDdv~~ 286 (314)
..++ +..+...+ ..+--|||+|.+-.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 2222 33333333 34567999999853
No 207
>PRK14974 cell division protein FtsY; Provisional
Probab=97.09 E-value=0.0084 Score=53.45 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+..++.++|++|+||||++.+++..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999988888763
No 208
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.09 E-value=0.0016 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37888999999999999999864
No 209
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.008 Score=54.06 Aligned_cols=57 Identities=19% Similarity=0.218 Sum_probs=35.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc-ccHHHHHHHHHHHhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET-FEEFRVAKAMVEALD 252 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~ 252 (314)
...+++.++|+.|+||||++..++.... ..-..+.++++... ....+-++...+.++
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lg 261 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLD 261 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCC
Confidence 3468999999999999999998876332 22234556665322 223344444444443
No 210
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.08 E-value=0.0032 Score=54.13 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh-ccCChHHHHHHHHHHHhhhhhhhhHHH
Q 048765 4 AIVSPLLEQLISVSAEELTQQVKLVKGAEQEVEKLTSHLQTIQAVLSDAEQR-QVKEESVRVWLGRLKDVSYDIEDVLDE 82 (314)
Q Consensus 4 ~~v~~~~~kl~~~l~~~l~~e~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~ayd~eD~ld~ 82 (314)
+.|..++++|-++.+ .....+.-++.+++-++.+|+.++.||+..... +..-........++-..||++|.++|-
T Consensus 296 GyVdFlL~NLkdfq~----rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa 371 (402)
T PF12061_consen 296 GYVDFLLKNLKDFQG----RYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA 371 (402)
T ss_pred cHHHHHHhhHHHHhc----cccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence 467788888888743 333445667899999999999999999987433 332234889999999999999999998
Q ss_pred HHHHHHHHHHhhccccccccccccccCcccchhhhhhHHHHHHHHHHHHHHHH
Q 048765 83 WITARRRLQMKQNADSAQKQVSSCFPASSIGFKKIILRQDIAVKIKGINKKLG 135 (314)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~ 135 (314)
+... .. + .+.....-..+...|..+++.++
T Consensus 372 Ci~k---------------~~------P--~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 372 CISK---------------SV------P--HWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred hhcC---------------CC------c--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 7511 00 0 12223334677777887777654
No 211
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.07 E-value=0.0018 Score=53.63 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=61.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh-hcC-ceeEEEEcCccccHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI-RKF-DKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F-~~~~wv~~~~~~~~~~~~~~ 246 (314)
.++||-++-++++.-.... .+...+.|.||+|+||||-+..++. +.- ..+ +.+.-.+.|++
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr--~LLG~~~ke~vLELNASde--------- 89 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR--ELLGDSYKEAVLELNASDE--------- 89 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH--HHhChhhhhHhhhccCccc---------
Confidence 5799999888887765533 4578899999999999998877765 221 112 33333333333
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHc-------cCceEEEEEeccccCCccCHHhHHH
Q 048765 247 MVEALDGHESHLGEFQSLLRHIYESI-------AGKSFLLVLDDVWDGNYVKWEPFYH 297 (314)
Q Consensus 247 i~~~~~~~~~~~~~~~~~~~~l~~~L-------~~kr~LlVlDdv~~~~~~~~~~l~~ 297 (314)
..++.+...|+.+- .++--.||||..++...-.-..++.
T Consensus 90 ------------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRR 135 (333)
T KOG0991|consen 90 ------------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRR 135 (333)
T ss_pred ------------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHH
Confidence 33444444444333 2455678999987754333334443
No 212
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.05 E-value=0.0079 Score=51.09 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=55.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC----------------C--
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH----------------E-- 255 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~----------------~-- 255 (314)
+.-.++.|.|.+|+|||+++.++.... . ..-..++|++... ++.++.+.+.+ ++-. .
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~~~~-~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRNMAQ-FGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHHHHH-hCCCHHHHhhcCCEEEEeccccc
Confidence 456899999999999999998875521 1 2346788888765 44455554332 2110 0
Q ss_pred ------------CCCCcHHHHHHHHHHHccC-ceEEEEEecccc
Q 048765 256 ------------SHLGEFQSLLRHIYESIAG-KSFLLVLDDVWD 286 (314)
Q Consensus 256 ------------~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~ 286 (314)
....+..++...+.+.++. +.-++|+|.+-.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 0123556666667666532 445799999854
No 213
>PRK13695 putative NTPase; Provisional
Probab=97.05 E-value=0.00061 Score=54.93 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+.|+|.+|+|||||++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998774
No 214
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.04 E-value=0.0005 Score=64.59 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=40.3
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+++|.++.++++++.|......-....+++.++|++|+|||+||+.+...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999984332222345679999999999999999999873
No 215
>PRK08233 hypothetical protein; Provisional
Probab=97.04 E-value=0.0024 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|+|.|.+|+||||||..+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999998876
No 216
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.99 E-value=0.0027 Score=60.05 Aligned_cols=50 Identities=30% Similarity=0.299 Sum_probs=32.3
Q ss_pred cccccchhhHHHHH---HHhhccCc---CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELL---SKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~---~~L~~~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|.+...+.+. .++..... ......+-+.++|++|+|||+||+.++.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence 46788766555444 43322110 0113345588999999999999999987
No 217
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.98 E-value=0.0048 Score=49.90 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-.+++|+|..|+|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999998763
No 218
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.97 E-value=0.0023 Score=57.12 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=67.7
Q ss_pred cccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHH
Q 048765 171 ICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEA 250 (314)
Q Consensus 171 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~ 250 (314)
++|....+..+.+.+..-. ..-.-|.|.|..|+||+++|+.++.... ..-...+-|+|.... ...+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~--r~~~pfv~vnc~~~~--~~~l~~~l-- 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSK--RWQGPLVKLNCAALS--ENLLDSEL-- 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcC--ccCCCeEEEeCCCCC--hHHHHHHH--
Confidence 3566666666666665433 2345678999999999999999976321 112234456665432 12222111
Q ss_pred hcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCC-----------CCceEEEecc
Q 048765 251 LDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL-----------HGSKILVTTR 313 (314)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 313 (314)
++........... ...-..-....-.|+||+|..........|...+..+. ...+||.||.
T Consensus 71 fG~~~g~~~ga~~--~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~ 142 (329)
T TIGR02974 71 FGHEAGAFTGAQK--RHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATN 142 (329)
T ss_pred hccccccccCccc--ccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEech
Confidence 1111000000000 00000112344568999998765445556767665331 1237887773
No 219
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.96 E-value=0.0049 Score=51.71 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.7
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+|+|.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 220
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.95 E-value=0.00035 Score=62.39 Aligned_cols=113 Identities=26% Similarity=0.311 Sum_probs=71.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcC-ceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF-DKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESI 272 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L 272 (314)
...+.+.++|.||+||||++-.+.. +..-| +.++++.+....+...+.-.+...++..... -+.....+..++
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~ 85 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRI 85 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHH
Confidence 3478999999999999999988755 45667 5677777777667766666666656543221 123345566677
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.++|.++|+||.-+.. ..=..+...+-.+.+.-.|+.|+|
T Consensus 86 ~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsr 125 (414)
T COG3903 86 GDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSR 125 (414)
T ss_pred hhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhH
Confidence 8899999999984321 011122233333444445666655
No 221
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.0042 Score=54.71 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=56.5
Q ss_pred ccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHH
Q 048765 170 EICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFR 242 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 242 (314)
.+=|-++++++|.+...-.--+ +-..++=|.++|++|.|||-||++|++ +....| +.+...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF-----IrvvgS----- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF-----IRVVGS----- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE-----EEeccH-----
Confidence 4555677777776654221100 234577888999999999999999998 444444 333221
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEEecccc
Q 048765 243 VAKAMVEALDGHESHLGEFQSLLRHIYESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~ 286 (314)
++.+.. ..+-..++..+.+.- ....+.|++|.++.
T Consensus 220 ---ElVqKY------iGEGaRlVRelF~lArekaPsIIFiDEIDA 255 (406)
T COG1222 220 ---ELVQKY------IGEGARLVRELFELAREKAPSIIFIDEIDA 255 (406)
T ss_pred ---HHHHHH------hccchHHHHHHHHHHhhcCCeEEEEechhh
Confidence 122221 111223444444444 45689999999843
No 222
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.003 Score=58.37 Aligned_cols=50 Identities=26% Similarity=0.219 Sum_probs=37.1
Q ss_pred ccccch---hhHHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 170 EICGRV---GEKNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 170 ~~vgr~---~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++-|-+ .++++++++|.+...- ++.=++-|.++|++|.|||.||+.++-.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 455654 4678889998765421 2344677889999999999999999873
No 223
>PRK06762 hypothetical protein; Provisional
Probab=96.94 E-value=0.0064 Score=48.48 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999998876
No 224
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.0032 Score=62.49 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=35.8
Q ss_pred cccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+++.|.+..++.+.+++...-.. .-...+.+.++|++|+|||+||+.+++
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHH
Confidence 45788888888887766421100 012345688999999999999999987
No 225
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.94 E-value=0.013 Score=49.50 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=30.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET 237 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 237 (314)
+.-.++.|.|.+|+|||+|+..+.... ...-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccCC
Confidence 446799999999999999999876532 123456788887443
No 226
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.94 E-value=0.0048 Score=58.97 Aligned_cols=132 Identities=17% Similarity=0.230 Sum_probs=74.1
Q ss_pred cccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHH
Q 048765 167 DEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 167 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 246 (314)
....++|....+.++.+.+..-. ..-.-|.|+|..|+|||++|+.++.... ..-...+.|+|..... ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHHH
Confidence 33578999998888888775433 2334667999999999999999987321 1122345566654322 22221
Q ss_pred HHHHhcCCCC-CC-CcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhccCC---CC--------ceEEEec
Q 048765 247 MVEALDGHES-HL-GEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL---HG--------SKILVTT 312 (314)
Q Consensus 247 i~~~~~~~~~-~~-~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~g--------s~iivTt 312 (314)
.+.+... .. ..... . ...+ ....-.|+||+|..........|...+..+. .| .+||.||
T Consensus 266 ---~lfg~~~~~~~~~~~~---~-~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s 338 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQ---R-KGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAAT 338 (534)
T ss_pred ---HHcCCCCCccCCCCcC---C-CCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeC
Confidence 2211110 00 00000 0 0011 2334568999998765555666777775431 12 4788876
Q ss_pred c
Q 048765 313 R 313 (314)
Q Consensus 313 R 313 (314)
.
T Consensus 339 ~ 339 (534)
T TIGR01817 339 N 339 (534)
T ss_pred C
Confidence 3
No 227
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.93 E-value=0.0067 Score=49.83 Aligned_cols=22 Identities=50% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999773
No 228
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.014 Score=51.73 Aligned_cols=41 Identities=7% Similarity=0.048 Sum_probs=33.7
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.+++-++|||++...+....+.|...|..-+.+..+|++|.
T Consensus 105 ~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 46777899999998887788899999987777777777775
No 229
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.91 E-value=0.0089 Score=51.83 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=27.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV 234 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~ 234 (314)
.+.+++.++|++|+||||++.+++... ...-..+..+++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeC
Confidence 346899999999999999998887633 222234555554
No 230
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.90 E-value=0.0013 Score=60.62 Aligned_cols=50 Identities=24% Similarity=0.226 Sum_probs=35.4
Q ss_pred cccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++.|.+.+++.|.+.+...-.. .-...+-+.++|++|+|||+||+.+++
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~ 239 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN 239 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45778888888877766321000 112345678999999999999999988
No 231
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.90 E-value=0.0056 Score=58.09 Aligned_cols=132 Identities=18% Similarity=0.224 Sum_probs=75.5
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
...++|....+..+.+.+..-. ..-.-|.|+|..|+|||++|+.++.. ....-...+.|+|..... ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~--s~r~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAA--SPRADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh--CCcCCCCeEEEEcccCCh--HHHH--
Confidence 3568999999888888876543 33457889999999999999999873 222223456677765432 2211
Q ss_pred HHHhcCCC-CCC-CcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCC-----------CCceEEEecc
Q 048765 248 VEALDGHE-SHL-GEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL-----------HGSKILVTTR 313 (314)
Q Consensus 248 ~~~~~~~~-~~~-~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 313 (314)
..+.+.. ... .........+ + ....=.|+||+|..........|...+..+. ...|||.||.
T Consensus 256 -~~lfG~~~g~~~ga~~~~~g~~-~--~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 256 -SELFGHVKGAFTGAISNRSGKF-E--LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred -HHhcCccccccCCCcccCCcch-h--hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 1221111 000 0000000001 1 1223347899998765555667777775431 1348888874
No 232
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.89 E-value=0.048 Score=42.44 Aligned_cols=83 Identities=12% Similarity=0.203 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHHHHHHHHHHHhhhhhhhhH
Q 048765 2 VDAIVSPLLEQLISVSAEELTQQVKLVKGAEQEVEKLTSHLQTIQAVLSDAEQRQVK-EESVRVWLGRLKDVSYDIEDVL 80 (314)
Q Consensus 2 a~~~v~~~~~kl~~~l~~~l~~e~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~lr~~ayd~eD~l 80 (314)
|+-+.+++++...+-|...+.+..+....++.-+++|...++.|..++.+.+..+.. +..-+.=++++.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 455556666666666666677777777788889999999999999999998875432 2222677888888899999999
Q ss_pred HHHH
Q 048765 81 DEWI 84 (314)
Q Consensus 81 d~~~ 84 (314)
..|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8875
No 233
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0042 Score=58.32 Aligned_cols=98 Identities=17% Similarity=0.228 Sum_probs=58.2
Q ss_pred cccccchhhHHHHHHHhhccCcC------CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFR 242 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 242 (314)
+.+=|.+..+.+|.+++..-.+. +-...+-+.+||++|.|||.||+.+++ +..-.| +.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAg--el~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAG--ELGVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhh--hcCCce-----Eeecch-----
Confidence 45667888888877776542221 123466788999999999999999988 333233 333221
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEecccc
Q 048765 243 VAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 286 (314)
+|+....+ +....+.+.+.+.-..-.++++||+++-
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 22222221 1122222223333466789999999954
No 234
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.88 E-value=0.017 Score=50.01 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=33.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
-.++.|.|.+|+|||+++.+++.... ..+-..++|+++..+ ..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHH
Confidence 45888999999999999998876432 222356788877542 3444444433
No 235
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.88 E-value=0.0012 Score=57.27 Aligned_cols=95 Identities=23% Similarity=0.269 Sum_probs=47.5
Q ss_pred HHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCC
Q 048765 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESH 257 (314)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~ 257 (314)
...+++.+... -+-+.++|+.|+|||++++.......- ..| ...-++.+...+...+...+-..+.....
T Consensus 22 ~~~ll~~l~~~-------~~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~- 91 (272)
T PF12775_consen 22 YSYLLDLLLSN-------GRPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRG- 91 (272)
T ss_dssp HHHHHHHHHHC-------TEEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTT-
T ss_pred HHHHHHHHHHc-------CCcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC-
Confidence 34566666542 246689999999999999887652111 111 13345566554444332211111110000
Q ss_pred CCcHHHHHHHHHHHccCceEEEEEeccccCCccC
Q 048765 258 LGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVK 291 (314)
Q Consensus 258 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~ 291 (314)
... .--.+|+.++++||+--+..+.
T Consensus 92 -~~~--------gP~~~k~lv~fiDDlN~p~~d~ 116 (272)
T PF12775_consen 92 -RVY--------GPPGGKKLVLFIDDLNMPQPDK 116 (272)
T ss_dssp -EEE--------EEESSSEEEEEEETTT-S---T
T ss_pred -CCC--------CCCCCcEEEEEecccCCCCCCC
Confidence 000 0014689999999995543333
No 236
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.87 E-value=0.0032 Score=50.16 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=56.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc--cccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE--TFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
-.+++|+|..|+|||||.+.++... ......++++-.. ..+..... .+.++-.. +.+.-+...-.+...+-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~-qLS~G~~qrl~laral~ 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDAR---RAGIAMVY-QLSVGERQMVEIARALA 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHH---hcCeEEEE-ecCHHHHHHHHHHHHHh
Confidence 4589999999999999999987632 2334455543211 11111110 11111100 01111112222334455
Q ss_pred CceEEEEEecccc-CCccCHHhHHHhhccC-CCCceEEEeccC
Q 048765 274 GKSFLLVLDDVWD-GNYVKWEPFYHCLKNG-LHGSKILVTTRK 314 (314)
Q Consensus 274 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 314 (314)
.++-++++|+--. .|......+...+... ..|..||++|.+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 141 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5677888898632 2223344555555422 235567887764
No 237
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.87 E-value=0.011 Score=49.95 Aligned_cols=49 Identities=20% Similarity=0.115 Sum_probs=32.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
.-.++.|.|..|+|||||+.+++.... +.. ..++|++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL-QNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEeCCC--CHHHHHHHH
Confidence 345999999999999999866655321 222 4456776433 445666665
No 238
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.87 E-value=0.0059 Score=51.56 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+..+++|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988763
No 239
>PF14516 AAA_35: AAA-like domain
Probab=96.87 E-value=0.012 Score=52.58 Aligned_cols=111 Identities=15% Similarity=0.132 Sum_probs=68.1
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc-----ccHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET-----FEEFR 242 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~~ 242 (314)
.+..+.|....+.+.+.|... -..+.|.|+..+|||+|...+.+..+.. .+ ..+++++..- .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHH
Confidence 345778886677777777542 3588999999999999999998754332 34 3557876441 24555
Q ss_pred HHHHHHH----HhcCCCC-------CCCcHHHHHHHHHHHc---cCceEEEEEeccccC
Q 048765 243 VAKAMVE----ALDGHES-------HLGEFQSLLRHIYESI---AGKSFLLVLDDVWDG 287 (314)
Q Consensus 243 ~~~~i~~----~~~~~~~-------~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~ 287 (314)
+++.+.. +++.... ..........-+.+.+ .+++.+|+||+++..
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l 139 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRL 139 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhh
Confidence 5555554 4433221 1111222233344433 368999999999753
No 240
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.87 E-value=0.0043 Score=50.05 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999998853
No 241
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.86 E-value=0.0032 Score=55.48 Aligned_cols=86 Identities=23% Similarity=0.162 Sum_probs=53.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l 268 (314)
+.-+++-|+|+.|+|||||+..+.. ..+..-..++||+....+++.. ++.++.... .+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 4457999999999999999988876 4444567799999988877643 444443311 122334444555
Q ss_pred HHHc-cCceEEEEEecccc
Q 048765 269 YESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 269 ~~~L-~~kr~LlVlDdv~~ 286 (314)
...+ .+.--++|+|.|-.
T Consensus 124 e~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHHTTSESEEEEE-CTT
T ss_pred HHHhhcccccEEEEecCcc
Confidence 5555 45566999999843
No 242
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.85 E-value=0.0089 Score=48.15 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...+|.|+|++|+||||+++.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999874
No 243
>PRK07667 uridine kinase; Provisional
Probab=96.85 E-value=0.0036 Score=51.38 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=28.7
Q ss_pred HHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+.+.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345565554433 34589999999999999999998763
No 244
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.019 Score=50.79 Aligned_cols=41 Identities=15% Similarity=0.071 Sum_probs=32.9
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.+++-++|||++...+....+.|...+..-+.++.+|++|.
T Consensus 106 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 35567999999998877788999999987777777777765
No 245
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.84 E-value=0.0061 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 246
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.84 E-value=0.0071 Score=47.09 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-.+++|+|..|.|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999998763
No 247
>PTZ00301 uridine kinase; Provisional
Probab=96.83 E-value=0.0019 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999988865
No 248
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.003 Score=54.80 Aligned_cols=80 Identities=15% Similarity=0.234 Sum_probs=48.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhh--hhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEV--IRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
=++|.++|++|.|||+|.+.++....+ .+.|....-+.++ ...++..+...-+ .-...+.+.|++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsESg------KlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSESG------KLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhhhh------hHHHHHHHHHHHHHh
Confidence 367889999999999999999886544 3344433334332 2333333333221 223455666777775
Q ss_pred Cc--eEEEEEeccc
Q 048765 274 GK--SFLLVLDDVW 285 (314)
Q Consensus 274 ~k--r~LlVlDdv~ 285 (314)
++ -.++.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 54 3566788883
No 249
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.81 E-value=0.0018 Score=57.71 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.....+.|||++|.|||.+|+.++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 55788999999999999999999983
No 250
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.79 E-value=0.0025 Score=54.69 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=67.0
Q ss_pred cccccchhhHHHHHHHhhc-cCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh---cCc--eeEEEEcCccccHHH
Q 048765 169 EEICGRVGEKNELLSKLLC-ESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR---KFD--KILWVCVSETFEEFR 242 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~-~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---~F~--~~~wv~~~~~~~~~~ 242 (314)
..++|..-..+.++..+.. ..++.+.++-+++.+|..|+||...++.++++..-.+ .|- .++-.+.+.....+.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~ 161 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIED 161 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHH
Confidence 3577876666666666543 1222357888999999999999999999887542211 110 011111111111111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhc
Q 048765 243 VAKAMVEALDGHESHLGEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 300 (314)
- ..++...++..+ .-+|.|+|||+++.....-.+.|...|.
T Consensus 162 Y-----------------k~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 162 Y-----------------KEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred H-----------------HHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1 122333333333 3479999999998876566666766664
No 251
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.79 E-value=0.0094 Score=55.58 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=34.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc-cccHHHHHHHHHHHhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE-TFEEFRVAKAMVEALD 252 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~ 252 (314)
..|++++|+.|+||||++.+++.....+.....+..++... .....+-+..+.+.++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG 313 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG 313 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC
Confidence 36999999999999999999987443222222345555432 2233344444444443
No 252
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.78 E-value=0.012 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-.+++|+|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999998763
No 253
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.77 E-value=0.02 Score=45.80 Aligned_cols=117 Identities=18% Similarity=0.074 Sum_probs=64.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEE---EcCccccHHHHHHHHHHHh---cCC----CCCCC----cH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWV---CVSETFEEFRVAKAMVEAL---DGH----ESHLG----EF 261 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv---~~~~~~~~~~~~~~i~~~~---~~~----~~~~~----~~ 261 (314)
...|-|++-.|.||||.|..+.- +...+=-.++.+ .-........++..+.-.+ +.. ..+.. ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35778888899999999977755 333332233333 2222233334443320000 000 00111 12
Q ss_pred HHHHHHHHHHcc-CceEEEEEecccc---CCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 262 QSLLRHIYESIA-GKSFLLVLDDVWD---GNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 262 ~~~~~~l~~~L~-~kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
....+..++.+. ++--|||||.+-. ..--+.+++...+...+.+.-||+|-|+
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~ 139 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG 139 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC
Confidence 233444555554 4456999999832 1224567888888777778889999885
No 254
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.77 E-value=0.001 Score=50.33 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=18.9
Q ss_pred EEEEccCCCChHHHHHHhhch
Q 048765 199 ISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~ 219 (314)
|.|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 255
>PHA02244 ATPase-like protein
Probab=96.77 E-value=0.0075 Score=53.98 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-|.|+|++|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999873
No 256
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.76 E-value=0.011 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|.|||||.+.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999866
No 257
>PTZ00494 tuzin-like protein; Provisional
Probab=96.75 E-value=0.034 Score=50.81 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=68.7
Q ss_pred ccccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 166 IDEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 166 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
...+.++.|+.+-..+-..|.+-.. ..++++.+.|.-|.||++|.+.....+ --..++|++.. .++.++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE-----~~paV~VDVRg---~EDtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVE-----GVALVHVDVGG---TEDTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHc-----CCCeEEEEecC---CcchHH
Confidence 4456788888877766666655332 568999999999999999998776533 23467777764 456788
Q ss_pred HHHHHhcCCCCC-CCcHHHHH----HHHHHHccCceEEEEEe
Q 048765 246 AMVEALDGHESH-LGEFQSLL----RHIYESIAGKSFLLVLD 282 (314)
Q Consensus 246 ~i~~~~~~~~~~-~~~~~~~~----~~l~~~L~~kr~LlVlD 282 (314)
++.+.++.+..+ ..|.-+.+ ..-+....++.-+||+-
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk 478 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR 478 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 899998875432 22322222 22222345666777764
No 258
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0087 Score=48.05 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|.|||||.+.++.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999999976
No 259
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.74 E-value=0.04 Score=46.80 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=29.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE 236 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 236 (314)
.-.++.|.|.+|+|||+++..+..+.-.. +=..++|++...
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC
Confidence 34688999999999999999887643322 234677777644
No 260
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0048 Score=58.89 Aligned_cols=73 Identities=21% Similarity=0.125 Sum_probs=48.3
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc--ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET--FEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESI 272 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L 272 (314)
....|.|.|+.|+|||+||+.+++... +++.-.+.+++++.- ...+.+.+.+. .-+.+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHH
Confidence 345788999999999999999998655 444455666776542 12222222222 2233456
Q ss_pred cCceEEEEEeccc
Q 048765 273 AGKSFLLVLDDVW 285 (314)
Q Consensus 273 ~~kr~LlVlDdv~ 285 (314)
...+-+|||||++
T Consensus 492 ~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 WYAPSIIVLDDLD 504 (952)
T ss_pred hhCCcEEEEcchh
Confidence 6788999999994
No 261
>PRK05973 replicative DNA helicase; Provisional
Probab=96.73 E-value=0.019 Score=48.47 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=33.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
.-.++.|.|.+|+|||+++.++....- ..-..++|++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 346888999999999999998876332 22345777766553 44444444
No 262
>PRK05439 pantothenate kinase; Provisional
Probab=96.73 E-value=0.015 Score=51.11 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999988865
No 263
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.72 E-value=0.0077 Score=48.64 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45999999999999999998876
No 264
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.014 Score=49.45 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=37.3
Q ss_pred cccccchhhHHHHHHHhhccCc--C-----CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCce
Q 048765 169 EEICGRVGEKNELLSKLLCESS--E-----QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDK 228 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~--~-----~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~ 228 (314)
+++=|=.+++++|.+.....-- + .-...+-|.++|++|.|||-+|+.|+| +....|-.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfir 241 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIR 241 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEe
Confidence 3445556667766554321100 0 123466788999999999999999998 65555533
No 265
>PRK04328 hypothetical protein; Provisional
Probab=96.72 E-value=0.013 Score=50.26 Aligned_cols=87 Identities=15% Similarity=0.225 Sum_probs=53.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC----------------C--
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH----------------E-- 255 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~----------------~-- 255 (314)
+.-.++.|.|.+|+|||+|+.++.... ...-...+|++..+. +..+.+. +++++-. .
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~--~~~i~~~-~~~~g~d~~~~~~~~~l~iid~~~~~ 95 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH--PVQVRRN-MRQFGWDVRKYEEEGKFAIVDAFTGG 95 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC--HHHHHHH-HHHcCCCHHHHhhcCCEEEEeccccc
Confidence 346789999999999999998876532 233456788887663 3333332 2222211 0
Q ss_pred ------------CCCCcHHHHHHHHHHHccC-ceEEEEEeccc
Q 048765 256 ------------SHLGEFQSLLRHIYESIAG-KSFLLVLDDVW 285 (314)
Q Consensus 256 ------------~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 285 (314)
.+..+...+...+.+.++. +.-++|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt 138 (249)
T PRK04328 96 IGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVS 138 (249)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChh
Confidence 0123455566666666532 44579999983
No 266
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.72 E-value=0.013 Score=53.75 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=33.9
Q ss_pred cccccchhhHHHHHHHhh-------c--cCcCC---CCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLL-------C--ESSEQ---QKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~-------~--~~~~~---~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+...+.+...+. . ..... ......+.++|++|+|||+||+.+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~ 138 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLAR 138 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHH
Confidence 468998888887765441 1 00000 01235788999999999999999975
No 267
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.71 E-value=0.021 Score=52.40 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....+|.++|+.|+||||++.+++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999888753
No 268
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.70 E-value=0.015 Score=49.48 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.9
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+..|+|++|+|||+|+..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5578999999999999888753
No 269
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.70 E-value=0.012 Score=51.23 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=21.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...-+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987644
No 270
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.0046 Score=51.09 Aligned_cols=25 Identities=40% Similarity=0.508 Sum_probs=22.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+..+|+|.|..|+||||+|+.++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999977
No 271
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.69 E-value=0.004 Score=48.62 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=32.2
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH 254 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 254 (314)
+|.|-|++|+||||+|+.+.++.... . .+...++++|++..+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~----~---------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK----L---------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc----e---------eeccHHHHHHHHHcCCC
Confidence 68999999999999999997743221 1 14557788888876553
No 272
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.69 E-value=0.0015 Score=50.67 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998864
No 273
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.016 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-.+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999998865
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.0022 Score=50.06 Aligned_cols=26 Identities=35% Similarity=0.305 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
...-|.|.|++|+||||+++++.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 35678999999999999999998743
No 275
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.68 E-value=0.029 Score=49.69 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=32.1
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.+++-++|||++...+...-+.|...|..-..++.+|++|.
T Consensus 111 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 111 YGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred cCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 35677999999988776677788888877666777877775
No 276
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.67 E-value=0.014 Score=57.26 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=33.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc-cccHHHHHHHHHHHhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE-TFEEFRVAKAMVEALD 252 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~ 252 (314)
..++.++|+.|+||||++.+++...........+..++... .....+.+....+.++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g 242 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG 242 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC
Confidence 47999999999999999999886432221112444554322 1123344444444444
No 277
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.66 E-value=0.018 Score=51.29 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=28.4
Q ss_pred CceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 274 GKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 274 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
+++-++|+|++...+...-+.+...+.....+..+|++|.+
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~ 152 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHA 152 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCC
Confidence 45556677999877666667777777655456667777754
No 278
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.65 E-value=0.0019 Score=54.65 Aligned_cols=29 Identities=41% Similarity=0.495 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhh
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEV 222 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~ 222 (314)
++..+|.++||+|+||||..+.++.+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 56778889999999999999999875443
No 279
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.65 E-value=0.02 Score=51.93 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=51.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l 268 (314)
..-.++.|.|.+|+|||||+.+++... ......++|++..+. ...+. .-++.++.... ...+++.+.+.+
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 345689999999999999999987633 223356788876543 23322 22344443221 122344444444
Q ss_pred HHHccCceEEEEEecccc
Q 048765 269 YESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 269 ~~~L~~kr~LlVlDdv~~ 286 (314)
. ..+.-+||+|.+..
T Consensus 155 ~---~~~~~lVVIDSIq~ 169 (372)
T cd01121 155 E---ELKPDLVIIDSIQT 169 (372)
T ss_pred H---hcCCcEEEEcchHH
Confidence 3 34667899999843
No 280
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.65 E-value=0.0018 Score=53.90 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+..+|+|.|..|+|||||++.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999998763
No 281
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.64 E-value=0.0019 Score=53.71 Aligned_cols=26 Identities=38% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+...+|+|+|+.|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999763
No 282
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.64 E-value=0.004 Score=52.66 Aligned_cols=63 Identities=30% Similarity=0.287 Sum_probs=37.5
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHH
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRV 243 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 243 (314)
+...+++.+.... .+..+|+|.|++|+|||||+-.+.....-+++=-.++=|+-|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4455666665433 46789999999999999999888764443333344555555666654444
No 283
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.62 E-value=0.0068 Score=49.95 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++..++.|+|+.|+|||||++.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999876
No 284
>PHA02774 E1; Provisional
Probab=96.61 E-value=0.012 Score=55.47 Aligned_cols=51 Identities=16% Similarity=-0.009 Sum_probs=34.2
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE 236 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 236 (314)
-+..|..+|.. .++...+.|+|++|+|||.+|..+.+-. . ...+.|++...
T Consensus 420 fl~~lk~~l~~-----~PKknciv~~GPP~TGKS~fa~sL~~~L--~--G~vi~fvN~~s 470 (613)
T PHA02774 420 FLTALKDFLKG-----IPKKNCLVIYGPPDTGKSMFCMSLIKFL--K--GKVISFVNSKS 470 (613)
T ss_pred HHHHHHHHHhc-----CCcccEEEEECCCCCCHHHHHHHHHHHh--C--CCEEEEEECcc
Confidence 44555556532 1456789999999999999998887632 1 23456676543
No 285
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.60 E-value=0.003 Score=55.91 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=44.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.++.++++++.+.......+...+++.++|+.|.|||||+..+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999876655567889999999999999999998866
No 286
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.041 Score=47.90 Aligned_cols=113 Identities=10% Similarity=0.001 Sum_probs=65.1
Q ss_pred HHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh------------hhhcCceeEEEEcCcc--ccHHHH
Q 048765 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE------------VIRKFDKILWVCVSET--FEEFRV 243 (314)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~------------~~~~F~~~~wv~~~~~--~~~~~~ 243 (314)
.+.|...+... .-.....++|+.|+||+++|..+....- ...|.|.......... ...
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~i--- 77 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSI--- 77 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcH---
Confidence 44555555443 2345677999999999999977754210 0112232211111100 111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 244 AKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
+..+++...+... ..++.-++|+|++...+.+.++.|...+..-+.++.+|++|.
T Consensus 78 ---------------dqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~ 133 (290)
T PRK05917 78 ---------------ETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSA 133 (290)
T ss_pred ---------------HHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeC
Confidence 1112222222211 246677999999998887889999999987777777777765
No 287
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.59 E-value=0.0025 Score=53.72 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-|.|+|++|+||||+|+.+..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999998866
No 288
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.013 Score=47.06 Aligned_cols=113 Identities=19% Similarity=0.172 Sum_probs=56.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhc---CCCC--C---------CCcH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALD---GHES--H---------LGEF 261 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~---~~~~--~---------~~~~ 261 (314)
-.+++|+|..|.|||||.+.++... ......++++-....... ..+.+.++ .... . .+.-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4589999999999999999987632 223444444321100000 01111111 0000 0 0001
Q ss_pred HHHHHHHHHHccCceEEEEEecccc-CCccCHHhHHHhhccC-CCCceEEEeccC
Q 048765 262 QSLLRHIYESIAGKSFLLVLDDVWD-GNYVKWEPFYHCLKNG-LHGSKILVTTRK 314 (314)
Q Consensus 262 ~~~~~~l~~~L~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 314 (314)
+...-.+...|..++-++++|+--. .|......+...+... ..|..||++|.+
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~ 154 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHI 154 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
Confidence 1111224445566778999999733 2223334455555422 236678888764
No 289
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.57 E-value=0.0048 Score=55.17 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=66.2
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
.++|.+.....+...+... .-+.+.|.+|+|||+||+.+.. ... -..++|.+.....+.++.....-
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~--~l~---~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALAR--ALG---LPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHH--HhC---CCeEEEecCCCCCHHHhcCchhH
Confidence 3788777777776666543 3578999999999999999977 332 34567777777777765433332
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHc-----cCceEEEEEeccccCCccCHHhHHHhhc
Q 048765 250 ALDGHESHLGEFQSLLRHIYESI-----AGKSFLLVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 300 (314)
....... ....+. ..-+.++.+|.++......-..|...+.
T Consensus 92 ~~~~~~~----------~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 92 AALLLEP----------GEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred hhhhccC----------CeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 2210000 000000 1111599999998876555555666554
No 290
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.57 E-value=0.0066 Score=49.19 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 291
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.56 E-value=0.013 Score=57.55 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l 268 (314)
+.-+++-|+|.+|+|||||+..++.. ....-..++|++....+++. .+++++.... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 45678889999999999999877652 22334668999988877743 5666655321 222334455555
Q ss_pred HHHc-cCceEEEEEeccc
Q 048765 269 YESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 269 ~~~L-~~kr~LlVlDdv~ 285 (314)
...+ .++--|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 5555 4567799999985
No 292
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.55 E-value=0.021 Score=49.19 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=30.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE 236 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 236 (314)
+.-.++.|.|.+|+|||+++.+++.... ..-..++|++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecC
Confidence 4567899999999999999998765321 2234678888764
No 293
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.034 Score=49.69 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=34.1
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
.+++-++|||++...+...-+.|...|..-+.++-+|++|.+
T Consensus 106 ~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 106 LGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred cCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 467789999999988777888899999877777777777753
No 294
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.55 E-value=0.014 Score=53.51 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=33.7
Q ss_pred cccccchhhHHHHHHHhhc----cCc------CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLC----ESS------EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~----~~~------~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+..++.+...+.. -.. ........+.++|++|+|||+||+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 4589988888776544311 000 0011245688999999999999999975
No 295
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=96.54 E-value=0.015 Score=55.41 Aligned_cols=131 Identities=15% Similarity=0.065 Sum_probs=70.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|....+..+++.+..-. ..-.-|.|+|..|+||+++|+.++.. ....-...+.++|+... .+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~~--s~r~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHLR--SPRGKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHHh--CCCCCCCeEEeccccCC--HHHHHH--
Confidence 468898888887777764322 12234779999999999999998652 22222344567766543 122221
Q ss_pred HHhcCCCC-CCCcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhccCC---C--------CceEEEecc
Q 048765 249 EALDGHES-HLGEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL---H--------GSKILVTTR 313 (314)
Q Consensus 249 ~~~~~~~~-~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~---~--------gs~iivTtR 313 (314)
.+.+... ......... ...+ ....=.|+||+|..........|...+..+. . ..|||.||.
T Consensus 274 -elFG~~~~~~~~~~~~~---~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGK---KGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred -HhcCCCCCCcCCcccCC---CChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecC
Confidence 2222111 000000000 0011 1233457899998765455566777775431 1 237888774
No 296
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.027 Score=50.37 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=33.5
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.+++-++|||++...+....+.|...|..-++++.+|++|.
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 170 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSA 170 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEEC
Confidence 35667999999999888889999999987777887777764
No 297
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.53 E-value=0.0019 Score=43.37 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++.|.|..|+||||+++.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988763
No 298
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.53 E-value=0.022 Score=46.30 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=66.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc---cccHHHHHHHHH--HH--hcCC----C-CCCC---c
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE---TFEEFRVAKAMV--EA--LDGH----E-SHLG---E 260 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~--~~--~~~~----~-~~~~---~ 260 (314)
...|-|+|-.|-||||.|.-+.- +...+=-.+..+..-+ ......++..+- .. .+.. . .... .
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46888999999999999977654 3333333344444322 223333333210 00 0000 0 0001 1
Q ss_pred HHHHHHHHHHHc-cCceEEEEEecccc---CCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 261 FQSLLRHIYESI-AGKSFLLVLDDVWD---GNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 261 ~~~~~~~l~~~L-~~kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
.....+..++.+ .++-=|||||.+-. ..-.+.+++...|...+.+.-||+|=|+
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~ 157 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRG 157 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCC
Confidence 123344455555 44556999999832 2224577888888777778899999875
No 299
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.53 E-value=0.0039 Score=53.63 Aligned_cols=66 Identities=26% Similarity=0.257 Sum_probs=46.2
Q ss_pred HHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 179 NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.+|+..+.... ++..+|+|.|.+|+|||||.-.+.....-++|=-.++=|+-|++++.-.++-+=+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRi 103 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRI 103 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHh
Confidence 45566665544 6788999999999999999988876544444545566677777776666654433
No 300
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.53 E-value=0.01 Score=47.76 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 301
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.50 E-value=0.022 Score=46.56 Aligned_cols=88 Identities=22% Similarity=0.274 Sum_probs=46.8
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcC--------ceeEEEEcCccccHHHHHHHHHHHhcCCC-------------
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKF--------DKILWVCVSETFEEFRVAKAMVEALDGHE------------- 255 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------- 255 (314)
.++.|.|++|+|||+++..+.........| ..++|++...+. ..+.+.+........
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~--~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE--SQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H--HHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH--HHHHHHHHHHhcccCCccceEEeecccc
Confidence 478899999999999998887654432222 368888776653 233333322221110
Q ss_pred ---------CCCCcHHHHHHHHHHHccC--ceEEEEEecccc
Q 048765 256 ---------SHLGEFQSLLRHIYESIAG--KSFLLVLDDVWD 286 (314)
Q Consensus 256 ---------~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~ 286 (314)
..........+.+.+.+.. +.-+||||.+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~ 152 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQS 152 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGG
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHH
Confidence 0001123445566666644 467999998854
No 302
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.49 E-value=0.0096 Score=50.11 Aligned_cols=88 Identities=25% Similarity=0.240 Sum_probs=53.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC---------------CCC-
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH---------------ESH- 257 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~---------------~~~- 257 (314)
+.-.++.|.|.+|+|||+|+.++.... .+..=..++|++...+. +.+.+.+- +++-. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 445799999999999999998876522 12213467888876543 44444433 22211 001
Q ss_pred ----CCcHHHHHHHHHHHccC-ceEEEEEeccc
Q 048765 258 ----LGEFQSLLRHIYESIAG-KSFLLVLDDVW 285 (314)
Q Consensus 258 ----~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 285 (314)
..+...+...+.+.++. +...+|||.+-
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls 125 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLS 125 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHH
Confidence 34567777777776643 44799999984
No 303
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.48 E-value=0.012 Score=50.90 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=62.0
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES 256 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~ 256 (314)
..+.++..|... .....+.|+|+.|+|||||.+.+..... .....+++.-. .....+-..++...+..-+.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGK-KVGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCE-EeecchhHHHHHHHhccccc
Confidence 344455555432 3357899999999999999999986321 22333443211 11100111223222221110
Q ss_pred -------CCCcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 257 -------HLGEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 257 -------~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
+..+...-...+...+ ...+-++++|.+-.. +.+..+...+. .|..||+||.
T Consensus 168 ~~~~~r~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~~---~G~~vI~ttH 227 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEALH---AGVSIIATAH 227 (270)
T ss_pred ccccccccccccchHHHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHHh---CCCEEEEEec
Confidence 0111111122233333 357889999998543 33455545443 4777898886
No 304
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.47 E-value=0.031 Score=52.73 Aligned_cols=87 Identities=17% Similarity=0.131 Sum_probs=54.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC---------------CCCC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH---------------ESHL 258 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~---------------~~~~ 258 (314)
..-.++.|.|++|+|||||+.++.... ...-..++|+...+ +...+...+ +.++-. .+..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEccccc
Confidence 456789999999999999999987633 23335677776654 344454443 333321 1111
Q ss_pred CcHHHHHHHHHHHcc-CceEEEEEeccc
Q 048765 259 GEFQSLLRHIYESIA-GKSFLLVLDDVW 285 (314)
Q Consensus 259 ~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 285 (314)
...++....+.+.+. .+.-++|+|.+-
T Consensus 336 ~~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred CChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 233556666766663 355689999984
No 305
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.013 Score=54.15 Aligned_cols=33 Identities=27% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeE
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKIL 230 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~ 230 (314)
..+..+.+.|++|+|||+||..++. ...|..+=
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvK 568 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVK 568 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEE
Confidence 4566777899999999999999865 45576543
No 306
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.47 E-value=0.0078 Score=54.27 Aligned_cols=102 Identities=18% Similarity=0.155 Sum_probs=57.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhh----hhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEV----IRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIY 269 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 269 (314)
...+=+.|||..|.|||.|+-.+|+...+ +-||. .++..+-+.+.........+ ..+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l----~~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPL----PQVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccH----HHHH
Confidence 45788999999999999999999885432 22342 33333333332211112222 3344
Q ss_pred HHccCceEEEEEeccccCCccCHHhHHHhhccC-CCCceEEEeccC
Q 048765 270 ESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG-LHGSKILVTTRK 314 (314)
Q Consensus 270 ~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 314 (314)
+.+.++..||.||+..-.|..+---|...|... ..|. |||+|-|
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gv-vlVaTSN 166 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGV-VLVATSN 166 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCC-EEEecCC
Confidence 455667789999998655433322233334322 4465 5555543
No 307
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.46 E-value=0.0084 Score=51.69 Aligned_cols=87 Identities=21% Similarity=0.219 Sum_probs=58.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC-------------------
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH------------------- 254 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~------------------- 254 (314)
+.-+++.|.|.+|+|||+++.++.. +...+...++||+..+. ...+.+.+.+ ++-.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~ 95 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENARS-FGWDLEVYIEKGKLAILDAFLSE 95 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHHH-cCCCHHHHhhcCCEEEEEccccc
Confidence 5578999999999999999999877 55556889999998774 4444444432 2111
Q ss_pred CC-------CCCcHHHHHHHHHHHcc-CceEEEEEeccc
Q 048765 255 ES-------HLGEFQSLLRHIYESIA-GKSFLLVLDDVW 285 (314)
Q Consensus 255 ~~-------~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 285 (314)
.. ...+...+...|.+..+ -+..-+|+|.+-
T Consensus 96 ~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~ 134 (260)
T COG0467 96 KGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSIT 134 (260)
T ss_pred cccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 00 01244556666666653 247789999984
No 308
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.45 E-value=0.051 Score=43.86 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
+-..+.|+|+.|.|||||.+.+|..+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 45688999999999999999998754
No 309
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.43 E-value=0.0037 Score=57.91 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=36.4
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|+++.++.+...+..+. .+.|.|++|+|||+||+.+..
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~ 61 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF 61 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence 358999999999998887644 578999999999999999976
No 310
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.42 E-value=0.0026 Score=51.71 Aligned_cols=24 Identities=38% Similarity=0.372 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998875
No 311
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.40 E-value=0.023 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=21.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++-..++|+|+.|+|||||++.+..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999998854
No 312
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.40 E-value=0.007 Score=47.58 Aligned_cols=87 Identities=20% Similarity=0.231 Sum_probs=48.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc-------Ccc--ccHHH---H---HHHHHHHhcCCC-----
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV-------SET--FEEFR---V---AKAMVEALDGHE----- 255 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~-------~~~--~~~~~---~---~~~i~~~~~~~~----- 255 (314)
..+|-+.|..|+||||||+.+.. +....-..+.+++. +.+ ++..+ - +..++..+....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIv 79 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIV 79 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 35888999999999999999987 44444455666652 221 22211 1 122222222211
Q ss_pred CCCCcHHHHHHHHHHHccCceEEEEEecc
Q 048765 256 SHLGEFQSLLRHIYESIAGKSFLLVLDDV 284 (314)
Q Consensus 256 ~~~~~~~~~~~~l~~~L~~kr~LlVlDdv 284 (314)
.......+..+..++.+...+|+-|.=++
T Consensus 80 a~isp~~~~R~~~R~~~~~~~f~eVyv~~ 108 (156)
T PF01583_consen 80 AFISPYREDREWARELIPNERFIEVYVDC 108 (156)
T ss_dssp E----SHHHHHHHHHHHHTTEEEEEEEES
T ss_pred eeccCchHHHHHHHHhCCcCceEEEEeCC
Confidence 12233355556666666666888887776
No 313
>PRK06547 hypothetical protein; Provisional
Probab=96.40 E-value=0.0032 Score=50.59 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....+|.|.|+.|+||||+++.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999763
No 314
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.40 E-value=0.021 Score=48.63 Aligned_cols=89 Identities=21% Similarity=0.153 Sum_probs=51.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc-----cccHHHHHHHHHHHhcCCC-------CCCCcHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE-----TFEEFRVAKAMVEALDGHE-------SHLGEFQ 262 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~-----~~~~~~~~~~i~~~~~~~~-------~~~~~~~ 262 (314)
+-.+++|||..|.|||||++.+..-. ..-...+++.-.+ .....+-..++++..+... ...+.-+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34689999999999999999997632 2233444443211 1122334455555555332 1122222
Q ss_pred HHHHHHHHHccCceEEEEEecccc
Q 048765 263 SLLRHIYESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 263 ~~~~~l~~~L~~kr~LlVlDdv~~ 286 (314)
...-.|...|.-+.-|+|.|..-+
T Consensus 115 rQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchh
Confidence 222334566677888999998643
No 315
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.40 E-value=0.034 Score=46.73 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=33.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 246 (314)
+.-.++.|.|.+|+|||+++.+++.. ....=..++|++...+ +..+...
T Consensus 14 ~~g~~~li~G~~G~GKt~~~~~~~~~--~~~~g~~~~y~s~e~~--~~~l~~~ 62 (224)
T TIGR03880 14 PEGHVIVVIGEYGTGKTTFSLQFLYQ--GLKNGEKAMYISLEER--EERILGY 62 (224)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCC--HHHHHHH
Confidence 34678999999999999999888753 2122356788887663 4444433
No 316
>PRK03839 putative kinase; Provisional
Probab=96.39 E-value=0.0026 Score=51.55 Aligned_cols=22 Identities=45% Similarity=0.776 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.|.|+|++|+||||+++.++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998773
No 317
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.39 E-value=0.0097 Score=48.10 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.|.|.|++|+||||+|+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 318
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.38 E-value=0.0051 Score=46.97 Aligned_cols=39 Identities=21% Similarity=0.082 Sum_probs=27.9
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+...+.+.|...- +.-.++.+.|.-|+||||+++.++..
T Consensus 7 ~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 7 AMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4445555554321 23458999999999999999999874
No 319
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.38 E-value=0.0099 Score=58.16 Aligned_cols=117 Identities=17% Similarity=0.090 Sum_probs=64.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
+.++|....+.++.+.+..-. ..-.-|.|+|..|+||+++|+.+++.. ...-...+.|+|..... ..+...
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s--~r~~~pfv~vnc~~~~~-~~~~~e-- 395 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNES--ERAAGPYIAVNCQLYPD-EALAEE-- 395 (638)
T ss_pred cceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhC--CccCCCeEEEECCCCCh-HHHHHH--
Confidence 357888888877777665433 123347799999999999999997632 11122345566655432 222122
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhcc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKN 301 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 301 (314)
+.+....... .. ....+ ....=.|+||++..........|...+..
T Consensus 396 --lfg~~~~~~~-~~----~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~ 442 (638)
T PRK11388 396 --FLGSDRTDSE-NG----RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKT 442 (638)
T ss_pred --hcCCCCcCcc-CC----CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhc
Confidence 2221100000 00 00011 22344699999987655555667777753
No 320
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.37 E-value=0.0041 Score=50.70 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=18.6
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999874
No 321
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.37 E-value=0.0092 Score=53.65 Aligned_cols=106 Identities=13% Similarity=0.112 Sum_probs=54.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
...+.|.|+.|+||||+.+.+.. .+..+....++. +.++. +.........+..... ..+.......++..|...
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~--~i~~~~~~~i~t-iEdp~--E~~~~~~~~~i~q~ev-g~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID--YINKNAAGHIIT-IEDPI--EYVHRNKRSLINQREV-GLDTLSFANALRAALRED 195 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--hhCcCCCCEEEE-EcCCh--hhhccCccceEEcccc-CCCCcCHHHHHHHhhccC
Confidence 46899999999999999998876 333344444443 22211 1000000000000000 111123445566777888
Q ss_pred eEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 276 SFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
.=.|++|++.+. +.+... +.....|..|+.|+
T Consensus 196 pd~i~vgEird~--~~~~~~---l~aa~tGh~v~~T~ 227 (343)
T TIGR01420 196 PDVILIGEMRDL--ETVELA---LTAAETGHLVFGTL 227 (343)
T ss_pred CCEEEEeCCCCH--HHHHHH---HHHHHcCCcEEEEE
Confidence 889999999643 333332 22223455455554
No 322
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0074 Score=58.95 Aligned_cols=44 Identities=23% Similarity=0.304 Sum_probs=34.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++||+.+++++++.|.... ...-.++|.+|+|||+++.-++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~------KNNPvLiGEpGVGKTAIvEGLA~ 213 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRT------KNNPVLVGEPGVGKTAIVEGLAQ 213 (786)
T ss_pred CCCcChHHHHHHHHHHHhccC------CCCCeEecCCCCCHHHHHHHHHH
Confidence 458999999999999998754 22334789999999999865554
No 323
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.36 E-value=0.014 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.++.|.|+.|.||||+.+.+..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999988864
No 324
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.34 E-value=0.0058 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=18.1
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..|.|+|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47889999999999999999774
No 325
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.0063 Score=46.85 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=37.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESI 272 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L 272 (314)
..-|.|.|.+|+|||||+..+.. .. ..-|+++|.-..-..+....-+.. ....-+.+.+.+.|...+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae--~~-----~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m 73 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE--KT-----GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLM 73 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH--Hh-----CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHH
Confidence 45788999999999999998875 21 134666665333222221111111 122334555566665555
No 326
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.30 E-value=0.0078 Score=45.22 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=35.0
Q ss_pred cccccchhhHHHHHHHhhcc-CcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCE-SSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~-~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++|..-..+.+++.+..- .+..+.++-|++.+|..|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 35677655555554444321 1113477889999999999999999988775
No 327
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.29 E-value=0.029 Score=54.16 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=34.1
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhh-hhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEV-IRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
++..|.|.+|+||||++..+...... ...-...+.+..+..-....+...+..
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 58889999999999999888763211 111124566666665555555555544
No 328
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.017 Score=46.36 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-.++.|.|+.|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999874
No 329
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.27 E-value=0.0036 Score=47.23 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=21.9
Q ss_pred EEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHH
Q 048765 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRV 243 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 243 (314)
+.|+|.+|+|||++|+.+.. .....|.. |.+..+..+.++
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R---Iq~tpdllPsDi 41 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR---IQFTPDLLPSDI 41 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE---EE--TT--HHHH
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE---EEecCCCCcccc
Confidence 57899999999999999987 55566743 333444444443
No 330
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.26 E-value=0.044 Score=48.60 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
...++.++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46899999999999999999887643
No 331
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.25 E-value=0.16 Score=50.55 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=23.4
Q ss_pred CChHHHHHHHHHHHhhhhhhhhHHHHHH
Q 048765 58 KEESVRVWLGRLKDVSYDIEDVLDEWIT 85 (314)
Q Consensus 58 ~~~~~~~wl~~lr~~ayd~eD~ld~~~~ 85 (314)
.++.+..+.++++.+-.++.+.++.+..
T Consensus 144 aS~~L~~ir~~~~~~~~~i~~~l~~~~~ 171 (771)
T TIGR01069 144 ASEELDAIRESLKALEEEVVKRLHKIIR 171 (771)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999888888764
No 332
>PRK04040 adenylate kinase; Provisional
Probab=96.24 E-value=0.0038 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 333
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.24 E-value=0.015 Score=55.25 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=64.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|....+..+.+.+..-. ..-.-|.|.|..|+||+++|+.+++.. ...-.+.+-|+|.... +..+.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~S--~r~~~pfv~inC~~l~--e~lle--- 280 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQLS--GRRDFPFVAINCGAIA--ESLLE--- 280 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHhc--CcCCCCEEEeccccCC--hhHHH---
Confidence 358999888888887765322 234578899999999999999998632 1111233455665432 12222
Q ss_pred HHhcCCCC-CCCcHH-HHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhcc
Q 048765 249 EALDGHES-HLGEFQ-SLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKN 301 (314)
Q Consensus 249 ~~~~~~~~-~~~~~~-~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 301 (314)
..+.+... ...... .-...+.+ ....=.|+||++..........|...+..
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~e--~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~ 333 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLIE--AAHRGTLFLDEIGEMPLPLQTRLLRVLEE 333 (526)
T ss_pred HHhcCCcccccccccccccccchh--hcCCceEEecChHhCCHHHHHHHHHHHhc
Confidence 12222110 000000 00000000 12344689999987654455567777653
No 334
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.22 E-value=0.026 Score=46.15 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=21.3
Q ss_pred EEEEEEccCCCChHHHHHHhhchH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
..|+|.|..|+||||+++.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998743
No 335
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.21 E-value=0.05 Score=50.69 Aligned_cols=85 Identities=25% Similarity=0.242 Sum_probs=51.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l 268 (314)
..-.++.|.|.+|+|||||+.+++.... ..-..++|++..+.. ..+... ++.++.... ...+...+.+.+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees~--~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i 152 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEESA--SQIKLR-AERLGLPSDNLYLLAETNLEAILATI 152 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccccH--HHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHH
Confidence 3456899999999999999999977432 223457888765533 333222 344443211 123344444444
Q ss_pred HHHccCceEEEEEecccc
Q 048765 269 YESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 269 ~~~L~~kr~LlVlDdv~~ 286 (314)
.+ .+.-+||+|.+..
T Consensus 153 ~~---~~~~lVVIDSIq~ 167 (446)
T PRK11823 153 EE---EKPDLVVIDSIQT 167 (446)
T ss_pred Hh---hCCCEEEEechhh
Confidence 32 3556899999853
No 336
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.20 E-value=0.0041 Score=58.15 Aligned_cols=135 Identities=13% Similarity=0.235 Sum_probs=75.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh--hcCceeEEEEcCccccHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI--RKFDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~~~~~ 246 (314)
++++|.+.-...|...+.... -..--...|+.|+||||+|+-++.-.--. .+.+ .|.+......+...
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e-----PC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE-----PCGKCISCKEINEG 85 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC-----cchhhhhhHhhhcC
Confidence 457999888888888887643 23445678999999999998876521100 1111 11111111111000
Q ss_pred -HHHHhc---CCCCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 247 -MVEALD---GHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 247 -i~~~~~---~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
...-+. ......++++++.+.+... .+++--+.|||+|.-.....|+.|...|..-+.+-+.|+.|.
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 000000 0011233444444444322 245666899999976666788998888876666666666654
No 337
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.20 E-value=0.07 Score=44.17 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|..|+|||||.+.+..
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998864
No 338
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.19 E-value=0.0032 Score=51.88 Aligned_cols=21 Identities=48% Similarity=0.599 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|+|.|..|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998866
No 339
>PRK00625 shikimate kinase; Provisional
Probab=96.19 E-value=0.004 Score=50.11 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.++||+|+||||+++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998866
No 340
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.19 E-value=0.03 Score=51.99 Aligned_cols=89 Identities=18% Similarity=0.088 Sum_probs=55.3
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc-cHHHHHHHHHHHhcCC-------CCCCCcH-----
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF-EEFRVAKAMVEALDGH-------ESHLGEF----- 261 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~~~~~----- 261 (314)
+-.-++|+|.+|+|||||+.++..+... .+-+.++++-+.+.. .+.++...+...-... ..+....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3457899999999999999888875432 256888888776644 3345555554431111 0011111
Q ss_pred HHHHHHHHHHc--c-CceEEEEEecc
Q 048765 262 QSLLRHIYESI--A-GKSFLLVLDDV 284 (314)
Q Consensus 262 ~~~~~~l~~~L--~-~kr~LlVlDdv 284 (314)
....-.+.+++ + ++..||++|++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 12223355665 3 89999999999
No 341
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.19 E-value=0.032 Score=46.84 Aligned_cols=23 Identities=17% Similarity=-0.016 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.++.|.|+.|.||||+.+.+..
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999988865
No 342
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.16 E-value=0.0034 Score=50.95 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.|+|++|+||||+++.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998866
No 343
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.24 Score=42.94 Aligned_cols=97 Identities=22% Similarity=0.358 Sum_probs=57.2
Q ss_pred cccccchhhHHHHHHHhhccCc------CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFR 242 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 242 (314)
+++.|-+...+.|.+...-.-. ++....+-|.++|++|.||+.||+.|+.. ... -|+++|..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE--AnS-----TFFSvSSS----- 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE--ANS-----TFFSVSSS----- 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh--cCC-----ceEEeehH-----
Confidence 3466777777766654221100 01244788999999999999999999873 222 23344332
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEEecccc
Q 048765 243 VAKAMVEALDGHESHLGEFQSLLRHIYESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~ 286 (314)
.+++.+.+ +.+.++..|.+.- ++|..+|++|.|+.
T Consensus 201 ---DLvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 201 ---DLVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 22222221 2233444454443 67889999999854
No 344
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.15 E-value=0.0043 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...|.|+|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 345
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.12 E-value=0.019 Score=52.34 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=36.1
Q ss_pred cccccchhhHHHHHHHhhcc--------CcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++|.++..+.+.-.+... .-......+.|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45888888888776555531 0001123467889999999999999999773
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.019 Score=45.30 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=54.8
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcccc--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFE--EFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (314)
.+++|+|..|.|||||.+.+.... ......++++-..... ... ....+.-...-.......+ .+...+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~qlS~G~~~r~-~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEE----LRRRIGYVPQLSGGQRQRV-ALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHH----HHhceEEEeeCCHHHHHHH-HHHHHHhc
Confidence 689999999999999999997632 2334455553221110 111 1111111000111112222 23344445
Q ss_pred ceEEEEEecccc-CCccCHHhHHHhhccC-CCCceEEEeccC
Q 048765 275 KSFLLVLDDVWD-GNYVKWEPFYHCLKNG-LHGSKILVTTRK 314 (314)
Q Consensus 275 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~iivTtR~ 314 (314)
..-++++|+.-. .|......+...+... ..+..+|++|.+
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 577888998743 2222334454444321 224567877753
No 347
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.12 E-value=0.044 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|.|+.|.|||||.+.+..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998876
No 348
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.11 E-value=0.032 Score=51.51 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=47.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC------CCCCCcH-----HHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH------ESHLGEF-----QSL 264 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~-----~~~ 264 (314)
-..++|+|..|+|||||++.+.... .....++++.-........+....+...... ..+.... ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4578999999999999998886532 1223444443222334444433333322110 1111111 112
Q ss_pred HHHHHHHc--cCceEEEEEecc
Q 048765 265 LRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 265 ~~~l~~~L--~~kr~LlVlDdv 284 (314)
.-.+.+++ +++..|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22344555 689999999999
No 349
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.10 E-value=0.031 Score=46.57 Aligned_cols=84 Identities=25% Similarity=0.292 Sum_probs=49.8
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc-cHHHHHHHHHHHhcCC-------CCC-CCcHH----H
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF-EEFRVAKAMVEALDGH-------ESH-LGEFQ----S 263 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~-~~~~~----~ 263 (314)
.-+.|+|.+|+|||+|+..+.++.. -+..+++-+.+.. ...++.+.+...-... ..+ ....+ .
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5788999999999999999987432 3445788887653 4445555553321000 011 11111 1
Q ss_pred HHHHHHHHc--cCceEEEEEecc
Q 048765 264 LLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 264 ~~~~l~~~L--~~kr~LlVlDdv 284 (314)
..-.+.+++ +++..|+++||+
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETH
T ss_pred cchhhhHHHhhcCCceeehhhhh
Confidence 112223333 799999999999
No 350
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.10 E-value=0.0048 Score=45.99 Aligned_cols=22 Identities=41% Similarity=0.770 Sum_probs=19.5
Q ss_pred EEEEccCCCChHHHHHHhhchH
Q 048765 199 ISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~ 220 (314)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998643
No 351
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.09 E-value=0.059 Score=47.50 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|.|||||.+.+..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998865
No 352
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.08 E-value=0.0049 Score=49.82 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999988663
No 353
>PF13245 AAA_19: Part of AAA domain
Probab=96.07 E-value=0.02 Score=39.22 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=16.3
Q ss_pred EEEEEEccCCCChHHHH-HHhhc
Q 048765 197 HIISIVGMGGIGKTTLA-QLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa-~~v~~ 218 (314)
+++.|.|++|+|||+++ +.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46778999999999554 44444
No 354
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.05 E-value=0.039 Score=50.77 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=49.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc-ccHHHHHHHHHHHhcCC-------CCCCCcHH----
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET-FEEFRVAKAMVEALDGH-------ESHLGEFQ---- 262 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~-------~~~~~~~~---- 262 (314)
.-..++|+|..|+|||||.+.+.... +.+..++.-+.+. ....+++.+....-... ..+.....
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34588999999999999999887632 3444555555443 33334444433210000 00111111
Q ss_pred -HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 -SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 -~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
...-.+.+++ +++..||++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 1122344555 689999999999
No 355
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.05 E-value=0.056 Score=50.45 Aligned_cols=85 Identities=22% Similarity=0.201 Sum_probs=49.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l 268 (314)
..-.++.|.|.+|+|||||+.++..... ..-..++|++..+. ...+... +..++.... ...+...+...+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EEs--~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i 166 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEES--LQQIKMR-AIRLGLPEPNLYVLSETNWEQICANI 166 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcCC--HHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHH
Confidence 4567899999999999999999866332 22235778876543 2333221 223332211 122344444444
Q ss_pred HHHccCceEEEEEecccc
Q 048765 269 YESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 269 ~~~L~~kr~LlVlDdv~~ 286 (314)
.+ .+.-++|+|.+..
T Consensus 167 ~~---~~~~~vVIDSIq~ 181 (454)
T TIGR00416 167 EE---ENPQACVIDSIQT 181 (454)
T ss_pred Hh---cCCcEEEEecchh
Confidence 32 3556899999853
No 356
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.05 E-value=0.041 Score=52.99 Aligned_cols=52 Identities=17% Similarity=0.036 Sum_probs=30.9
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcC--ceeEEEEcCccccHHHHHHHHH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKF--DKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
++..|.|.+|+||||++..+..-......- ...+-+.....-....+...+.
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~ 214 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLR 214 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHH
Confidence 588899999999999998887632211111 1345555554444444444443
No 357
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.05 E-value=0.0082 Score=48.78 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=28.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV 234 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~ 234 (314)
.+++.|+|+.|+|||||++.+.. .....|...++.+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 46889999999999999999987 44456755555443
No 358
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.05 E-value=0.044 Score=50.43 Aligned_cols=85 Identities=18% Similarity=0.191 Sum_probs=50.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccH-HHHHHHHHHHhcCC-------CCCCCcH-----H
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEE-FRVAKAMVEALDGH-------ESHLGEF-----Q 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~i~~~~~~~-------~~~~~~~-----~ 262 (314)
-..++|+|..|+|||||++.+... ...+.++.+-+.+..+. .++...++..-... ..+.... .
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~----~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRG----TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccC----CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 457899999999999999988762 12355666666654433 44555544331111 0011111 1
Q ss_pred HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
...-.+.+++ +++..|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 1222344555 689999999999
No 359
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.04 E-value=0.0052 Score=49.66 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.3
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+++.|+|+.|+|||||++.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999977
No 360
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.04 E-value=0.007 Score=46.87 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=27.4
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE 236 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 236 (314)
++|.|+|..|+|||||++.+.+... +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4799999999999999999998432 24455565666554
No 361
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.0051 Score=50.27 Aligned_cols=24 Identities=50% Similarity=0.636 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..+|+|-||-|+||||||+.+.+.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHH
Confidence 578999999999999999998763
No 362
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.02 E-value=0.043 Score=49.55 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=18.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhh
Q 048765 195 GLHIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~ 217 (314)
+-+++++||+.|+||||-..+++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLA 224 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLA 224 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHH
Confidence 47899999999999987654443
No 363
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.01 E-value=0.018 Score=46.73 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=30.0
Q ss_pred EEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHH
Q 048765 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 246 (314)
+.|.|++|+|||+|+.++....- ..=..++|++.... ...+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCC--HHHHHHH
Confidence 57899999999999998866322 22356778877543 4444433
No 364
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.01 E-value=0.0052 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++|.+.|++|+||||+|+.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 365
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=96.00 E-value=0.034 Score=45.82 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999988764
No 366
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=96.00 E-value=0.042 Score=47.33 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=54.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhh--hhcCceeEEEEcCcccc-HHHHHHHHHHHhcCCC--------CCCCcH---
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEV--IRKFDKILWVCVSETFE-EFRVAKAMVEALDGHE--------SHLGEF--- 261 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~~--------~~~~~~--- 261 (314)
-.-++|.|-.|+|||+|+..+.++... +++-+.++++-+.+... ..++...+...-.... ....-.
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 456799999999999999988775431 12347788888877543 3455555544311110 011101
Q ss_pred -HHHHHHHHHHc--c-CceEEEEEeccc
Q 048765 262 -QSLLRHIYESI--A-GKSFLLVLDDVW 285 (314)
Q Consensus 262 -~~~~~~l~~~L--~-~kr~LlVlDdv~ 285 (314)
.-..-.+.+++ + ++..|+++||+-
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 11122344555 3 789999999993
No 367
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.99 E-value=0.0073 Score=48.41 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999999864
No 368
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=95.99 E-value=0.023 Score=53.96 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.++|....+..+.+.+..-. ..-.-|.|.|..|+||+++|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 458999888888887765322 23457889999999999999999874
No 369
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.99 E-value=0.0048 Score=48.28 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.7
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++.++|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 367899999999999998866
No 370
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.97 E-value=0.12 Score=44.78 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++.++|..|+||||+++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 46999999999999999988865
No 371
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.015 Score=55.10 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=43.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHH-HHHHHHHHHc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQ-SLLRHIYESI 272 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~l~~~L 272 (314)
...+.+.++|++|.|||.||+.+++ ....+|-.+.+ + + ++... ..+.. .+...+....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~---~------~----l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKG---S------E----LLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeC---H------H----Hhccc------cchHHHHHHHHHHHHH
Confidence 4456889999999999999999988 44445533321 1 1 11111 11112 2222333333
Q ss_pred cCceEEEEEecccc
Q 048765 273 AGKSFLLVLDDVWD 286 (314)
Q Consensus 273 ~~kr~LlVlDdv~~ 286 (314)
+...+.|+||++..
T Consensus 333 ~~~p~iiFiDEiDs 346 (494)
T COG0464 333 KLAPSIIFIDEIDS 346 (494)
T ss_pred cCCCcEEEEEchhh
Confidence 67889999999954
No 372
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.022 Score=53.63 Aligned_cols=71 Identities=18% Similarity=0.220 Sum_probs=43.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
..-|.++|++|.|||-||++|+| +..-.| +++-.+ ++++..- .+....+..-+++.-..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF-----isVKGP--------ELlNkYV-----GESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVAN--EAGANF-----ISVKGP--------ELLNKYV-----GESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhh--hccCce-----EeecCH--------HHHHHHh-----hhHHHHHHHHHHHhhcCC
Confidence 55678999999999999999999 555555 333221 1222111 111222333333444567
Q ss_pred eEEEEEecccc
Q 048765 276 SFLLVLDDVWD 286 (314)
Q Consensus 276 r~LlVlDdv~~ 286 (314)
.++|+||.++.
T Consensus 605 PCVIFFDEiDa 615 (802)
T KOG0733|consen 605 PCVIFFDEIDA 615 (802)
T ss_pred CeEEEecchhh
Confidence 89999999954
No 373
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.95 E-value=0.053 Score=40.93 Aligned_cols=36 Identities=22% Similarity=0.067 Sum_probs=25.2
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC 233 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 233 (314)
.+.|.|..|+|||+.+...............++|+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~ 37 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA 37 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence 467899999999999988766433332345566664
No 374
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.95 E-value=0.0049 Score=50.17 Aligned_cols=22 Identities=45% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 375
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.034 Score=50.11 Aligned_cols=83 Identities=22% Similarity=0.303 Sum_probs=53.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHIY 269 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 269 (314)
.-.++.|=|-+|+|||||..++..... ..- .+.||+-.+...-.+ --++.++.... ...+++++.+.+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA--~~~-~vLYVsGEES~~Qik---lRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLA--KRG-KVLYVSGEESLQQIK---LRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHH--hcC-cEEEEeCCcCHHHHH---HHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 356889999999999999999988433 222 788887665433322 23444543322 1234455444444
Q ss_pred HHccCceEEEEEecccc
Q 048765 270 ESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 270 ~~L~~kr~LlVlDdv~~ 286 (314)
+ .+.-|+|+|.+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 6788999999844
No 376
>PRK06217 hypothetical protein; Validated
Probab=95.94 E-value=0.0064 Score=49.41 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=25.2
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcC--ceeEEEE
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKF--DKILWVC 233 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~ 233 (314)
.|.|.|.+|+||||+++.+...... .+| |..+|-.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~~ 39 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWLP 39 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeecc
Confidence 5889999999999999999764322 233 4555643
No 377
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.93 E-value=0.0052 Score=47.70 Aligned_cols=21 Identities=48% Similarity=0.687 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.|.|+.|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 378
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.93 E-value=0.022 Score=46.58 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEEccCCCChHHHHHHhhchH
Q 048765 198 IISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
+|.|.|+.|+||||+++.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998743
No 379
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.91 E-value=0.037 Score=44.70 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=16.1
Q ss_pred EEEEEEccCCCChHHHHHHh
Q 048765 197 HIISIVGMGGIGKTTLAQLA 216 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v 216 (314)
+.+.|.|..|+|||+.+...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~ 44 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLP 44 (201)
T ss_pred CcEEEECCCCCchhHHHHHH
Confidence 67889999999999944433
No 380
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.90 E-value=0.025 Score=51.65 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHHHhhcc--------CcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++|.+...+.+..++... ........+.+.++|++|+|||+||+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889988888888777431 0000112467899999999999999999773
No 381
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.89 E-value=0.071 Score=45.87 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=37.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDG 253 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~ 253 (314)
-.++.|-|.+|+|||+++..++.+.-... -..++|++... +..++...++.....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm--~~~~l~~R~la~~s~ 73 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEM--SEEELAARLLARLSG 73 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS---HHHHHHHHHHHHHT
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCC--CHHHHHHHHHHHhhc
Confidence 35788899999999999999988654332 25677776543 455666666655533
No 382
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.89 E-value=0.029 Score=46.94 Aligned_cols=52 Identities=19% Similarity=0.079 Sum_probs=33.1
Q ss_pred EEEEEccCCCChHHHHHHhhchHh-----hhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEE-----VIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~-----~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
+..|.|++|+|||+++..+..... ....-...+-+.......+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 688999999999987776665331 1233455566666666677777777776
No 383
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.88 E-value=0.063 Score=49.77 Aligned_cols=89 Identities=21% Similarity=0.121 Sum_probs=53.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc-cHHHHHHHHHHHhcCC-------CCCCCcH-----
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF-EEFRVAKAMVEALDGH-------ESHLGEF----- 261 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~~~~~----- 261 (314)
+-.-++|+|..|+|||||+..+..+.... +=+.++++-+.+.. .+.++...+...-... ..+....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34578999999999999999887643322 22467777776544 3345555555431111 0111111
Q ss_pred HHHHHHHHHHc---cCceEEEEEecc
Q 048765 262 QSLLRHIYESI---AGKSFLLVLDDV 284 (314)
Q Consensus 262 ~~~~~~l~~~L---~~kr~LlVlDdv 284 (314)
....-.+.+++ +++..||++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 11223355665 689999999999
No 384
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.88 E-value=0.0062 Score=48.17 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=18.1
Q ss_pred EEEEEccCCCChHHHHHHhh
Q 048765 198 IISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~ 217 (314)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998874
No 385
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.86 E-value=0.019 Score=54.21 Aligned_cols=86 Identities=24% Similarity=0.178 Sum_probs=48.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE-cCccccHHHHHHHHHHHhcCC-----CCCCCcH----HHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC-VSETFEEFRVAKAMVEALDGH-----ESHLGEF----QSL 264 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~----~~~ 264 (314)
+-.-..|+|++|+|||||++.+.+... ..+-++.++|- |.+..... ..|-+.+... ....... ..+
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~ 490 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAEL 490 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHH
Confidence 345678999999999999999887322 22345544443 44432222 2233333211 1111111 223
Q ss_pred HHHHHHHc--cCceEEEEEecc
Q 048765 265 LRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 265 ~~~l~~~L--~~kr~LlVlDdv 284 (314)
.-.+.++| .++..||++|++
T Consensus 491 ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 491 AIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHcCCCEEEEEeCc
Confidence 33344555 789999999999
No 386
>PRK13949 shikimate kinase; Provisional
Probab=95.86 E-value=0.0065 Score=48.74 Aligned_cols=21 Identities=43% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-|.|+|++|+||||+++.++.
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 387
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.86 E-value=0.037 Score=50.98 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=50.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccH-HHHHHHHHHHhcCC-------CCCCCcH-----
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEE-FRVAKAMVEALDGH-------ESHLGEF----- 261 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~i~~~~~~~-------~~~~~~~----- 261 (314)
+-..++|+|..|+|||||++.++... ..+.++++-+.+.... .++....+..-+.. ..+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 35688999999999999999887632 2245555666554433 34443333321111 0111111
Q ss_pred HHHHHHHHHHc--cCceEEEEEecc
Q 048765 262 QSLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 262 ~~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
....-.+.+++ +++..|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 11223344555 689999999999
No 388
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.85 E-value=0.029 Score=44.96 Aligned_cols=80 Identities=16% Similarity=0.270 Sum_probs=42.5
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCC---CCcHHHHHHHHHHHccC
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESH---LGEFQSLLRHIYESIAG 274 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~l~~~L~~ 274 (314)
++.|.|.+|+|||++|..+.... . ...+++.....++. +....|.......+.. .+.-.++...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~---~~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--G---LQVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--C---CCcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68899999999999999886521 1 12445554444333 3444443333222111 11111233334433332
Q ss_pred ceEEEEEecc
Q 048765 275 KSFLLVLDDV 284 (314)
Q Consensus 275 kr~LlVlDdv 284 (314)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337999997
No 389
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.84 E-value=0.0073 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.-.+++|+|+.|+|||||++.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998763
No 390
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.84 E-value=0.034 Score=44.79 Aligned_cols=106 Identities=21% Similarity=0.189 Sum_probs=55.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhh--------------hhcCceeEEEEcCccccHHHHHHHHHHHhcC-----C
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEV--------------IRKFDKILWVCVSETFEEFRVAKAMVEALDG-----H 254 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~--------------~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~-----~ 254 (314)
.+..-|.+.|+.|+||||+.+.+....-. -..+...+| +++.......+.+........ .
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~-d~gG~~~~~~~w~~y~~~~~~iIfVvD 90 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIW-DLGGQESFRPLWKSYFQNADGIIFVVD 90 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEE-EESSSGGGGGGGGGGHTTESEEEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEE-eccccccccccceeeccccceeEEEEe
Confidence 34567789999999999999998653210 011122223 344443333333333332211 0
Q ss_pred CCCCCcHHHHHHHHHHHc-----cCceEEEEEeccccCCccCHHhHHHhhc
Q 048765 255 ESHLGEFQSLLRHIYESI-----AGKSFLLVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 255 ~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 300 (314)
..+.....+....+.+.+ ++.++||++=--+.++.....++...+.
T Consensus 91 ssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~ 141 (175)
T PF00025_consen 91 SSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLG 141 (175)
T ss_dssp TTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTT
T ss_pred cccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhh
Confidence 112223444555555544 4577887776555444445666766553
No 391
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.84 E-value=0.013 Score=46.34 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=29.6
Q ss_pred hhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 175 VGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+.++.|.+.|. + +++.++|..|+|||||++.+..+
T Consensus 23 ~~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 356777888873 3 68999999999999999998764
No 392
>PRK13947 shikimate kinase; Provisional
Probab=95.84 E-value=0.0066 Score=48.60 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|+|++|+||||+++.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999876
No 393
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.83 E-value=0.029 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+-|.++|++|+|||.+|+.+.+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHH
Confidence 3456788999999999999999987
No 394
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.83 E-value=0.027 Score=52.92 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=40.7
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET 237 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 237 (314)
.++|....+..+...+..-. ..-..+.|.|.+|+|||++|+.++... ...-...+-++|+..
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~s--~~~~~~~i~i~c~~~ 200 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRHS--PRAKAPFIALNMAAI 200 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhcC--CCCCCCeEeeeCCCC
Confidence 57888877777776664322 233457899999999999999997732 111223455566543
No 395
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.83 E-value=0.027 Score=45.10 Aligned_cols=78 Identities=15% Similarity=0.261 Sum_probs=44.4
Q ss_pred EEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCC---CCcHHHHHHHHHHHccCc
Q 048765 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESH---LGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~l~~~L~~k 275 (314)
+.|.|..|+|||++|.++... ....++|+.....++.+ ....|.+.....+.. .+....+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 678999999999999988652 23467788777766553 334433322222111 11122333333221 2 2
Q ss_pred eEEEEEecc
Q 048765 276 SFLLVLDDV 284 (314)
Q Consensus 276 r~LlVlDdv 284 (314)
.-.|++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999997
No 396
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.83 E-value=0.06 Score=43.66 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....++.|.|.+|+||||+++.+...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998763
No 397
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.82 E-value=0.071 Score=49.85 Aligned_cols=91 Identities=18% Similarity=0.168 Sum_probs=52.5
Q ss_pred eEEEEEEccCCCChHHHH-HHhhchHhhh-----hcCceeEEEEcCccccHHHHHHHHHHHhcC-CC--------CCCCc
Q 048765 196 LHIISIVGMGGIGKTTLA-QLACNHEEVI-----RKFDKILWVCVSETFEEFRVAKAMVEALDG-HE--------SHLGE 260 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa-~~v~~~~~~~-----~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~-~~--------~~~~~ 260 (314)
-.-+.|.|-.|+|||+|| -.+.+...+. ++-+.++++-+++..+...-+...++.-+. .. .+...
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 456789999999999997 5556643221 244677888888765443333333433321 10 11111
Q ss_pred HH----HHHHHHHHHc--cCceEEEEEecccc
Q 048765 261 FQ----SLLRHIYESI--AGKSFLLVLDDVWD 286 (314)
Q Consensus 261 ~~----~~~~~l~~~L--~~kr~LlVlDdv~~ 286 (314)
.+ -..-.+.+++ +++..|||+||+-+
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 11 0112233444 68999999999944
No 398
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.80 E-value=0.087 Score=50.13 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=54.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC---------------CCCC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH---------------ESHL 258 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~---------------~~~~ 258 (314)
+.-.++.|.|.+|+|||+|+..+.... ...-..++|++.... ...+.+.+ .+++.. .+..
T Consensus 271 ~~g~~~li~G~~G~GKT~l~~~~~~~~--~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 345 (509)
T PRK09302 271 FRGSIILVSGATGTGKTLLASKFAEAA--CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPES 345 (509)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCccc
Confidence 345688899999999999999987632 234467888877653 44444443 333321 1112
Q ss_pred CcHHHHHHHHHHHcc-CceEEEEEeccc
Q 048765 259 GEFQSLLRHIYESIA-GKSFLLVLDDVW 285 (314)
Q Consensus 259 ~~~~~~~~~l~~~L~-~kr~LlVlDdv~ 285 (314)
....+....+.+.+. .+.-++|+|.+-
T Consensus 346 ~~~~~~~~~i~~~i~~~~~~~vVIDslt 373 (509)
T PRK09302 346 YGLEDHLIIIKREIEEFKPSRVAIDPLS 373 (509)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 234555566666553 345589999983
No 399
>PF13479 AAA_24: AAA domain
Probab=95.80 E-value=0.051 Score=45.33 Aligned_cols=20 Identities=50% Similarity=0.428 Sum_probs=17.5
Q ss_pred EEEEEEccCCCChHHHHHHh
Q 048765 197 HIISIVGMGGIGKTTLAQLA 216 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v 216 (314)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46789999999999999766
No 400
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.80 E-value=0.053 Score=52.55 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+-..++|+|..|+|||||++.+..
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999998865
No 401
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.79 E-value=0.032 Score=51.55 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-..++|+|+.|+|||||++.+.-
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHc
Confidence 45899999999999999998743
No 402
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.79 E-value=0.0081 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++.|+|+.|+|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3788999999999999999966
No 403
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.77 E-value=0.021 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....++.|+|++|+|||||+..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999888764
No 404
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.77 E-value=0.028 Score=49.99 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+..+|+|.|.+|+|||||+..+...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999887663
No 405
>PRK14530 adenylate kinase; Provisional
Probab=95.77 E-value=0.0073 Score=50.47 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|+|++|+||||+++.+..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998865
No 406
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.76 E-value=0.0072 Score=51.29 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=17.4
Q ss_pred EEccCCCChHHHHHHhhchHh
Q 048765 201 IVGMGGIGKTTLAQLACNHEE 221 (314)
Q Consensus 201 I~G~~G~GKTtLa~~v~~~~~ 221 (314)
|+||+|+||||+++.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999877543
No 407
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.76 E-value=0.094 Score=49.52 Aligned_cols=87 Identities=17% Similarity=0.119 Sum_probs=52.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC---------------CC--
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH---------------ES-- 256 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~---------------~~-- 256 (314)
..-+++.|.|.+|+|||+||.++.... ..+.=...+||+..+ +..++.+.+. +++-. .+
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g-~~~~ge~~lyvs~eE--~~~~l~~~~~-~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNG-IIHFDEPGVFVTFEE--SPQDIIKNAR-SFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHH-HHhCCCCEEEEEEec--CHHHHHHHHH-HcCCCHHHHhhcCceEEEecCchh
Confidence 456899999999999999999886521 222125688888754 3444444432 22210 00
Q ss_pred ------CCCcHHHHHHHHHHHc-cCceEEEEEecc
Q 048765 257 ------HLGEFQSLLRHIYESI-AGKSFLLVLDDV 284 (314)
Q Consensus 257 ------~~~~~~~~~~~l~~~L-~~kr~LlVlDdv 284 (314)
..-+.......+...+ .+++-.+|||.+
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 0124455666666666 456667999954
No 408
>PRK15453 phosphoribulokinase; Provisional
Probab=95.74 E-value=0.073 Score=46.00 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+..+|+|.|..|+||||+++.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998875
No 409
>PRK08149 ATP synthase SpaL; Validated
Probab=95.73 E-value=0.079 Score=48.73 Aligned_cols=85 Identities=19% Similarity=0.263 Sum_probs=48.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc-ccHHHHHHHHHHHhcCC-------CCCCCcH-----H
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET-FEEFRVAKAMVEALDGH-------ESHLGEF-----Q 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~-------~~~~~~~-----~ 262 (314)
-..++|+|..|+|||||++.++... +-+.++...+... .....+........... ..+.... .
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHH
Confidence 4578999999999999999887632 2233333444332 23445555555432211 0111111 1
Q ss_pred HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
.....+.+++ ++|..||++||+
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccch
Confidence 1223344555 689999999999
No 410
>PRK05922 type III secretion system ATPase; Validated
Probab=95.72 E-value=0.074 Score=48.96 Aligned_cols=85 Identities=18% Similarity=0.169 Sum_probs=48.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc-ccHHHHHHHHHHHhcCCCC----CCCc----H----H
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET-FEEFRVAKAMVEALDGHES----HLGE----F----Q 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~----~~~~----~----~ 262 (314)
-..++|+|..|+|||||.+.+.... +.+...++-+++. ......+.+.......... ...+ . .
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 4568999999999999999887632 2333444434332 2233444444433322110 0111 1 1
Q ss_pred HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
...-.+.+++ +++..|+++|++
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 2223345555 689999999999
No 411
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.72 E-value=0.081 Score=45.58 Aligned_cols=86 Identities=22% Similarity=0.194 Sum_probs=48.2
Q ss_pred eEEEEEEccCCCChHHHH-HHhhchHhhhhcCcee-EEEEcCccc-cHHHHHHHHHHHhcCC--------CCCCCcHH--
Q 048765 196 LHIISIVGMGGIGKTTLA-QLACNHEEVIRKFDKI-LWVCVSETF-EEFRVAKAMVEALDGH--------ESHLGEFQ-- 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~~-~wv~~~~~~-~~~~~~~~i~~~~~~~--------~~~~~~~~-- 262 (314)
-.-++|+|..|+|||+|+ ..+.+. .+-+.+ +++-+.+.. ...++...+...-... .......+
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 457889999999999995 555542 223444 666676654 3445555554321111 01111111
Q ss_pred --HHHHHHHHHc--cCceEEEEEeccc
Q 048765 263 --SLLRHIYESI--AGKSFLLVLDDVW 285 (314)
Q Consensus 263 --~~~~~l~~~L--~~kr~LlVlDdv~ 285 (314)
...-.+.+++ +++..||++||+-
T Consensus 145 a~~~a~aiAE~fr~~G~~Vlvl~DslT 171 (274)
T cd01132 145 APYTGCAMGEYFMDNGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEcChH
Confidence 1122233444 6899999999993
No 412
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.71 E-value=0.058 Score=49.55 Aligned_cols=85 Identities=22% Similarity=0.237 Sum_probs=46.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc-cccHHHHHHHHHHHhcCCC-------CCCCcH-----H
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE-TFEEFRVAKAMVEALDGHE-------SHLGEF-----Q 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~-------~~~~~~-----~ 262 (314)
-..++|+|..|+|||||++.+..... .+....+.+.+ ...+.++....+..-+... .+.... .
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 45789999999999999988876321 12222232332 2234444444433221110 111111 1
Q ss_pred HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
...-.+.+++ +++..||++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1223345555 689999999999
No 413
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.70 E-value=0.011 Score=49.09 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+.+.|+|+.|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 5678899999999999999998864
No 414
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.69 E-value=0.19 Score=45.71 Aligned_cols=73 Identities=26% Similarity=0.245 Sum_probs=43.7
Q ss_pred HHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc--cccHHHHHHHHHHHhc
Q 048765 178 KNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE--TFEEFRVAKAMVEALD 252 (314)
Q Consensus 178 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~--~~~~~~~~~~i~~~~~ 252 (314)
.++|++.|...... ....+.+|-.+|.-|+||||.+-+++...+- ....+-+...+ .+...+-++.+..+++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 45677777642111 1345789999999999999999888774433 22222222222 2334455666666654
Q ss_pred C
Q 048765 253 G 253 (314)
Q Consensus 253 ~ 253 (314)
.
T Consensus 156 v 156 (451)
T COG0541 156 V 156 (451)
T ss_pred C
Confidence 3
No 415
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.69 E-value=0.0068 Score=48.16 Aligned_cols=20 Identities=30% Similarity=0.607 Sum_probs=17.8
Q ss_pred EEEEccCCCChHHHHHHhhc
Q 048765 199 ISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~ 218 (314)
|.++|+.|+||||+++.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998865
No 416
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.68 E-value=0.0084 Score=46.99 Aligned_cols=20 Identities=45% Similarity=0.747 Sum_probs=18.5
Q ss_pred EEEEccCCCChHHHHHHhhc
Q 048765 199 ISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~ 218 (314)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999976
No 417
>PRK13975 thymidylate kinase; Provisional
Probab=95.67 E-value=0.0095 Score=48.86 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..|.|.|+.|+||||+++.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998773
No 418
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.67 E-value=0.026 Score=54.67 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=45.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh-cCceeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR-KFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
+.++|.++..+.+...+... ..+.++|++|+||||+++.+.. .... .|...+++.-+.. +...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~~-~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYPNPED-PNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEeCCCC-CchHHHHHH
Confidence 56889888887777666532 2455999999999999999986 3333 3333444433322 333445555
Q ss_pred HHHh
Q 048765 248 VEAL 251 (314)
Q Consensus 248 ~~~~ 251 (314)
+..+
T Consensus 87 ~~~~ 90 (608)
T TIGR00764 87 PAGE 90 (608)
T ss_pred HHhh
Confidence 5444
No 419
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.66 E-value=0.0087 Score=47.89 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=18.7
Q ss_pred EEEEccCCCChHHHHHHhhchH
Q 048765 199 ISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~ 220 (314)
|.|.|.+|+|||||++.++...
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998754
No 420
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.66 E-value=0.0083 Score=46.29 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+.|+|+.|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999976
No 421
>PRK14527 adenylate kinase; Provisional
Probab=95.64 E-value=0.01 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+..+|.|+|++|+||||+|+.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 422
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.60 E-value=0.098 Score=41.54 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEEEEccCCCChHHHHHHhh
Q 048765 197 HIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~ 217 (314)
++..|+|+.|.|||++.+.+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 588999999999999998863
No 423
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.60 E-value=0.0098 Score=47.84 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...|.|+|+.|+||||+++.+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHH
Confidence 34689999999999999999876
No 424
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.59 E-value=0.021 Score=46.92 Aligned_cols=41 Identities=29% Similarity=0.311 Sum_probs=29.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhh
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~ 217 (314)
++++|.+.....|.-.... ..-+.++|++|+|||+||+.+.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~ 43 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLP 43 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHH
Confidence 4678887777766655543 2478899999999999999874
No 425
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.59 E-value=0.012 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++.|.|++|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 426
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.59 E-value=0.011 Score=45.26 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|..|+|||||.+.++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEEccCCCccccceeeecc
Confidence 5889999999999999998865
No 427
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.59 E-value=0.051 Score=54.11 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=32.3
Q ss_pred cccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+.|.+...+.|.+.+.-.-.. .-...+-+.++|++|+|||+||+.+++
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 34667666666665544311000 112345578999999999999999987
No 428
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.58 E-value=0.068 Score=46.17 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=43.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
..++.|.|..|+||||+++.+... +...-..++.+.-+.++.... ..++....... ......++..|+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~-----~~q~~v~~~~~---~~~~~~l~~~lR~~ 149 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPG-----INQVQVNEKAG---LTFARGLRAILRQD 149 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCC-----ceEEEeCCcCC---cCHHHHHHHHhccC
Confidence 358999999999999999887652 221111223332121111110 01111111111 12345566667777
Q ss_pred eEEEEEeccccC
Q 048765 276 SFLLVLDDVWDG 287 (314)
Q Consensus 276 r~LlVlDdv~~~ 287 (314)
.=.|+++++.+.
T Consensus 150 PD~i~vgEiR~~ 161 (264)
T cd01129 150 PDIIMVGEIRDA 161 (264)
T ss_pred CCEEEeccCCCH
Confidence 888999999654
No 429
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.56 E-value=0.012 Score=48.82 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+..++|+++|+.|+|||||...+...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999988763
No 430
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.55 E-value=0.024 Score=54.95 Aligned_cols=74 Identities=14% Similarity=0.146 Sum_probs=51.6
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
+.++|.+..++.|...+... +.+.++|++|+||||+++.+.... ...+|+..+|..-+.. +...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~~-~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPED-PNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCCc-chHHHHHHHH
Confidence 56889888888887766532 368899999999999999987632 2234577788766433 5556666666
Q ss_pred HHhc
Q 048765 249 EALD 252 (314)
Q Consensus 249 ~~~~ 252 (314)
..++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 5443
No 431
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=95.55 E-value=0.16 Score=44.53 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=22.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.....|.|+|.+|+|||++.+.+...
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~ 61 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGE 61 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCC
Confidence 45667889999999999999998764
No 432
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.54 E-value=0.024 Score=50.22 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-..+.|+|..|+|||||++.+..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~ 166 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVD 166 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999998875
No 433
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.51 E-value=0.062 Score=49.51 Aligned_cols=86 Identities=20% Similarity=0.171 Sum_probs=50.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcccc-HHHHHHHHHHHhcCC-------CCCCCcH-H---
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFE-EFRVAKAMVEALDGH-------ESHLGEF-Q--- 262 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~-------~~~~~~~-~--- 262 (314)
+-..++|+|..|+|||||.+.++... .-+.++++-+.+..+ ..++....+..-+.. ..+.... +
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 35688999999999999999998742 235677777766543 333333322211111 0011111 1
Q ss_pred -HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 -SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 -~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
-..-.+.+++ +++..|+++|++
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122244555 689999999999
No 434
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.51 E-value=0.069 Score=49.34 Aligned_cols=89 Identities=16% Similarity=0.109 Sum_probs=54.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcccc-HHHHHHHHHHHhcCC-------CCCCCc-H----
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFE-EFRVAKAMVEALDGH-------ESHLGE-F---- 261 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~-------~~~~~~-~---- 261 (314)
+-.-++|.|.+|+|||+|+..+..+.. +.+-+.++|+-+.+..+ ..++...+...-... ..+... .
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 345789999999999999999877532 23447788888866543 345555554421111 011111 1
Q ss_pred HHHHHHHHHHc---cCceEEEEEecc
Q 048765 262 QSLLRHIYESI---AGKSFLLVLDDV 284 (314)
Q Consensus 262 ~~~~~~l~~~L---~~kr~LlVlDdv 284 (314)
....-.+.+++ +++..|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 11223345565 468999999999
No 435
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.05 Score=52.70 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=52.8
Q ss_pred ccccchhhHHHHHHHhhccCcC------CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRV 243 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~ 243 (314)
++=|-++-...|.+-+.-.-.+ +-.+.+-|.++|++|.|||-||++|+.. .. ..|+++-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP------ 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP------ 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH------
Confidence 3445555566666544321100 1133567889999999999999999873 22 233444332
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEecccc
Q 048765 244 AKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 286 (314)
++++..-+ ...+.+.+-+.+.-..+.|+|+||.+++
T Consensus 740 --ELLNMYVG-----qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --ELLNMYVG-----QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HHHHHHhc-----chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 12222111 1111122223333367899999999965
No 436
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.49 E-value=0.078 Score=50.45 Aligned_cols=89 Identities=17% Similarity=0.116 Sum_probs=54.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC----------------C--
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH----------------E-- 255 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~----------------~-- 255 (314)
+.-+++.|.|.+|+|||+|+.++.... ...+-..++|++...+ .+++.+.+.. ++-. .
T Consensus 29 p~Gs~~li~G~pGsGKT~l~~qf~~~~-~~~~ge~~lyis~ee~--~~~i~~~~~~-~g~d~~~~~~~g~l~~~~~~~~~ 104 (509)
T PRK09302 29 PKGRPTLVSGTAGTGKTLFALQFLVNG-IKRFDEPGVFVTFEES--PEDIIRNVAS-FGWDLQKLIDEGKLFILDASPDP 104 (509)
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCEEEEEccCC--HHHHHHHHHH-cCCCHHHHhhCCeEEEEecCccc
Confidence 456799999999999999999886532 2222357889987763 4444444332 2211 0
Q ss_pred -----CCCCcHHHHHHHHHHHcc-CceEEEEEecccc
Q 048765 256 -----SHLGEFQSLLRHIYESIA-GKSFLLVLDDVWD 286 (314)
Q Consensus 256 -----~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~ 286 (314)
....+...+...+.+.+. .+.-.+|||.+-.
T Consensus 105 ~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~ 141 (509)
T PRK09302 105 SEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEA 141 (509)
T ss_pred ccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHH
Confidence 001134455566665553 3445799999954
No 437
>PRK13948 shikimate kinase; Provisional
Probab=95.49 E-value=0.012 Score=47.76 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=21.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.....|.++|+.|+||||+++.+..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457889999999999999999876
No 438
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.48 E-value=0.014 Score=47.63 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+|.|+|+.|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999976
No 439
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.47 E-value=0.015 Score=42.63 Aligned_cols=22 Identities=41% Similarity=0.348 Sum_probs=19.6
Q ss_pred eEEEEEEccCCCChHHHHHHhh
Q 048765 196 LHIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~ 217 (314)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4688999999999999999875
No 440
>PRK09099 type III secretion system ATPase; Provisional
Probab=95.47 E-value=0.057 Score=49.89 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=47.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC-------CCCCCcH-----H
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH-------ESHLGEF-----Q 262 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~-----~ 262 (314)
+-..++|.|..|+|||||++.+...... -..+++..-.......++...+...-... ..+.... .
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~---d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC---DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 3468899999999999999998763221 12333333223334444444444331111 0011101 1
Q ss_pred HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
-..-.+.+++ +++..|+++|++
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1222344555 689999999999
No 441
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.45 E-value=0.05 Score=50.99 Aligned_cols=131 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
.++|......++...+..-. .....+.|.|..|+||+++|+.+.... .......+-+++... ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~--~~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHS--PRANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhC--CCCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 46776666666666554322 223456799999999999999997632 222334445565543 223322222
Q ss_pred HhcCCCCCC-CcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCC-----------CCceEEEecc
Q 048765 250 ALDGHESHL-GEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL-----------HGSKILVTTR 313 (314)
Q Consensus 250 ~~~~~~~~~-~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~iivTtR 313 (314)
++...... .... ......-....-.|+||++..........|...+..+. ...+||+||.
T Consensus 206 -fg~~~~~~~~~~~---~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 206 -FGHEKGAFTGANT---RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred -cCCCCCCCCCccc---CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 22111000 0000 00000112234458999998765555566777665431 1347888874
No 442
>PLN02200 adenylate kinase family protein
Probab=95.45 E-value=0.014 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+|.|+|++|+||||+++.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999998865
No 443
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.45 E-value=0.017 Score=51.72 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=37.5
Q ss_pred ccccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 166 IDEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 166 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++-+.++|.++....|...+.+ +.+.-+.|.|..|+||||+|+.++..
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3446799998888877776655 33556779999999999999999764
No 444
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.43 E-value=0.043 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++.|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7889999999999999999853
No 445
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=95.42 E-value=0.014 Score=43.45 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEccCCCChHHHHHHhhc
Q 048765 199 ISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~ 218 (314)
|+|+|+.|+|||||.+.+..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999986
No 446
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.41 E-value=0.14 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.1
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++..|.|.+|+||||+++.+..-
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~ 391 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREA 391 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHH
Confidence 47789999999999999998763
No 447
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.41 E-value=0.023 Score=49.28 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=26.5
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV 234 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~ 234 (314)
++++|+|..|+|||||+..+... ..... .+..|..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~--L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDR--LSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--HHhCC-CEEEEEE
Confidence 58999999999999999999874 33333 3555554
No 448
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.41 E-value=0.011 Score=46.66 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEEccCCCChHHHHHHhhchH
Q 048765 198 IISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
|++|+|+.|+|||||+..+....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998843
No 449
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=95.40 E-value=0.13 Score=45.74 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=47.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc-cccHHHHHHHHHHHhcCC-------CCCC-CcH----H
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE-TFEEFRVAKAMVEALDGH-------ESHL-GEF----Q 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~~~~~i~~~~~~~-------~~~~-~~~----~ 262 (314)
-..++|+|..|+|||||.+.+..... -++....-+.. ......+....+..-... ..+. ... .
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999998876322 23333343432 234444444444432111 0111 111 1
Q ss_pred HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
...-.+.+++ ++|..||++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1223344454 689999999998
No 450
>PRK04132 replication factor C small subunit; Provisional
Probab=95.39 E-value=0.11 Score=52.00 Aligned_cols=93 Identities=10% Similarity=-0.000 Sum_probs=58.0
Q ss_pred cCCCChHHHHHHhhchHhhhhcC-ceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEE
Q 048765 204 MGGIGKTTLAQLACNHEEVIRKF-DKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESI-AGKSFLLVL 281 (314)
Q Consensus 204 ~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVl 281 (314)
|.++||||+|..+++..- .+.+ ...+-++.++..+... .+.++..+....+ + ..+.-++||
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~---------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGINV-IREKVKEFARTKP---------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC---------------cCCCCCEEEEE
Confidence 678999999999987321 1122 2466677776555443 3344433321110 1 124579999
Q ss_pred eccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 282 DDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 282 Ddv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
|+++..+....+.|...+..-...+++|++|-
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N 668 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCN 668 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 99988876677888888875555667777653
No 451
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.38 E-value=0.056 Score=46.34 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|+|.|..|+||||+++.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 452
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=95.38 E-value=0.012 Score=49.14 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=20.8
Q ss_pred EEEEEEccCCCChHHHHHHhhchH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.-|.|+|++|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 567899999999999999998653
No 453
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.37 E-value=0.17 Score=46.84 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=35.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHh
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEAL 251 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~ 251 (314)
.-.++.|-|.+|+|||+++..+..+..... -..++|++.. .+...+...++...
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~-g~~v~~fSlE--m~~~~l~~Rl~~~~ 246 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALRE-GKPVLFFSLE--MSAEQLGERLLASK 246 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHHHHH
Confidence 345888999999999999999986443232 2346666543 35566666655543
No 454
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.37 E-value=0.19 Score=42.55 Aligned_cols=98 Identities=21% Similarity=0.301 Sum_probs=60.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC-ccccHHHHHHHHHHHhcCCCCCCCcH----HHHHHHHHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS-ETFEEFRVAKAMVEALDGHESHLGEF----QSLLRHIYE 270 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~l~~ 270 (314)
-.++.++|.-|+|||.+.+.... ...+ +.++=+.+. ...+...+...|...+...+ .... ......+.+
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~--s~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLA--SLNE--DQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRELAA 124 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHH--hcCC--CceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHHHHH
Confidence 46899999999999999994432 2111 222223443 34466677778888876632 2222 233344444
Q ss_pred Hc-cCce-EEEEEeccccCCccCHHhHHHhh
Q 048765 271 SI-AGKS-FLLVLDDVWDGNYVKWEPFYHCL 299 (314)
Q Consensus 271 ~L-~~kr-~LlVlDdv~~~~~~~~~~l~~~l 299 (314)
.. +++| ..+++|+....+.+..+.++-..
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~ 155 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLT 155 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHH
Confidence 44 6777 99999999876656666665544
No 455
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.37 E-value=0.057 Score=49.18 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=45.2
Q ss_pred chhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHH-HHhhchHhhhhcCceeEEEEcCcc---ccHHHHHHHHHH
Q 048765 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLA-QLACNHEEVIRKFDKILWVCVSET---FEEFRVAKAMVE 249 (314)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~~~~wv~~~~~---~~~~~~~~~i~~ 249 (314)
|.+..+.|..||.... -..|.|.||.|+||+.|+ .++..+ ...+..++|.+- .+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~------r~~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKD------RKNVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhC------CCCEEEEEChHhhhccChHHHHHHHHH
Confidence 5667889999998654 358899999999999999 666543 223777776432 233445555555
Q ss_pred Hhc
Q 048765 250 ALD 252 (314)
Q Consensus 250 ~~~ 252 (314)
++|
T Consensus 69 qvG 71 (431)
T PF10443_consen 69 QVG 71 (431)
T ss_pred hcC
Confidence 543
No 456
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.36 E-value=0.098 Score=51.80 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=27.3
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET 237 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 237 (314)
+++.|.|.+|+||||+++.+......... ...+++..+..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg 378 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTG 378 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCch
Confidence 47889999999999999998774332211 13456655544
No 457
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.35 E-value=0.036 Score=49.03 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=19.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++.+.|.||+||||+|....-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~ 24 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV 24 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH
Confidence 47899999999999999988543
No 458
>PRK08356 hypothetical protein; Provisional
Probab=95.34 E-value=0.018 Score=47.37 Aligned_cols=21 Identities=38% Similarity=0.496 Sum_probs=19.1
Q ss_pred eEEEEEEccCCCChHHHHHHh
Q 048765 196 LHIISIVGMGGIGKTTLAQLA 216 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v 216 (314)
..+|.|+|++|+||||+|+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHH
Confidence 357899999999999999988
No 459
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.33 E-value=0.015 Score=48.72 Aligned_cols=24 Identities=42% Similarity=0.559 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-.+++|+|..|+|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 345899999999999999998854
No 460
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.32 E-value=0.015 Score=47.83 Aligned_cols=36 Identities=28% Similarity=0.249 Sum_probs=25.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC 233 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 233 (314)
+-.|+.|+|+.|+|||||.+.+..-+.. =...+|++
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEEC
Confidence 3469999999999999999988553322 23455554
No 461
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.32 E-value=0.12 Score=44.65 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=65.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
-+...++|..|+|||+-++.+++. ....+.+..+..++...+...+....... ......+....+...+.+.
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~~~~~~~--~~~~~~d~~~~~~~~l~~~ 165 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIICAAAFGA--TDGTINDLTERLMIRLRDT 165 (297)
T ss_pred CceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHccC
Confidence 348889999999999999988772 12233345666667766666666555432 2234556667777777889
Q ss_pred eEEEEEeccccCCccCHHhHHHhh
Q 048765 276 SFLLVLDDVWDGNYVKWEPFYHCL 299 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~~~~l~~~l 299 (314)
.-+|+.|+........++.|....
T Consensus 166 ~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 166 VRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred cceeeeehhhccChHHHHHHHHHH
Confidence 999999998776555666665433
No 462
>PRK06761 hypothetical protein; Provisional
Probab=95.31 E-value=0.028 Score=48.74 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.0
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++|.|.|++|+||||+++.++..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 463
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.31 E-value=0.016 Score=45.51 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999877654
No 464
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=95.30 E-value=0.017 Score=47.44 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred ceEEEEEeccccC-CccCH-----HhHHHhhc-cCCCCceEEEeccC
Q 048765 275 KSFLLVLDDVWDG-NYVKW-----EPFYHCLK-NGLHGSKILVTTRK 314 (314)
Q Consensus 275 kr~LlVlDdv~~~-~~~~~-----~~l~~~l~-~~~~gs~iivTtR~ 314 (314)
+..|||||+++.. ....| ......|. ....|.-|++||++
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~ 125 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQS 125 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCC
Confidence 6789999999642 11233 23335554 56779999999985
No 465
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.29 E-value=0.035 Score=48.96 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=18.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+++.+.|-||+||||+|....-
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHH
Confidence 5789999999999999976644
No 466
>PRK13946 shikimate kinase; Provisional
Probab=95.29 E-value=0.014 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+.|.++|+.|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999876
No 467
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=95.27 E-value=0.057 Score=49.73 Aligned_cols=89 Identities=18% Similarity=0.133 Sum_probs=50.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC--------CCCCCc----HH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH--------ESHLGE----FQ 262 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~----~~ 262 (314)
+-..++|+|..|+|||||.+.++..... ...++.+.-.......+++...+..-+.. ...... ..
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 3457899999999999999988764321 12233222223345556655554432211 011111 11
Q ss_pred HHHHHHHHHc--cCceEEEEEecccc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDVWD 286 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv~~ 286 (314)
.....+.+++ +++..||++|++-.
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchHH
Confidence 2223344555 68999999999943
No 468
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.26 E-value=0.1 Score=47.92 Aligned_cols=85 Identities=19% Similarity=0.180 Sum_probs=47.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc-cHHHHHHHHHHHhcCC--------CCCCCcH----H
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF-EEFRVAKAMVEALDGH--------ESHLGEF----Q 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~--------~~~~~~~----~ 262 (314)
-..++|+|..|+|||||.+.+.... ..+..+...+.+.. ...++...+...-... ....... .
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYT----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999998887632 12334444454432 3344444433321110 0111111 1
Q ss_pred HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
...-.+.+++ +++..||++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1222344555 689999999999
No 469
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.25 E-value=0.11 Score=48.15 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=48.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc-cHHHHHHHHHHHhcCC-------CCCCCcH-----H
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF-EEFRVAKAMVEALDGH-------ESHLGEF-----Q 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~-------~~~~~~~-----~ 262 (314)
-..++|+|..|+|||||++.+.... ..+.++...+.... ....+...+...-... ..+.... .
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999887632 23444444444332 3344444443332111 0111111 1
Q ss_pred HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
...-.+.+++ +++..||++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 1223344555 689999999999
No 470
>PRK14532 adenylate kinase; Provisional
Probab=95.25 E-value=0.014 Score=47.56 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=18.2
Q ss_pred EEEEccCCCChHHHHHHhhc
Q 048765 199 ISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~ 218 (314)
|.++|++|+||||+++.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999998865
No 471
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.24 E-value=0.04 Score=45.89 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=26.7
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccH
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEE 240 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 240 (314)
.|+|+|-||+||||++..+....-.++.|+ +.=|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 589999999999999988544222222133 444565555544
No 472
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.1 Score=47.59 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.6
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+--.++||+|.|||+++.++++.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh
Confidence 34568999999999999999873
No 473
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.22 E-value=3.6 Score=40.77 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-..++|+|..|+|||||++.+..
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998743
No 474
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.22 E-value=0.037 Score=41.68 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.-.+|.+.|.-|+||||+++.++...
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45799999999999999999987643
No 475
>PRK04182 cytidylate kinase; Provisional
Probab=95.21 E-value=0.016 Score=46.63 Aligned_cols=21 Identities=52% Similarity=0.708 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 476
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.20 E-value=0.15 Score=44.07 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=43.0
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
.-..++|.||+||++|++.+..-. .+ ..+-+.+++.++..++-.++-..+ .+.-+++++
T Consensus 32 Gh~LLvG~~GsGr~sl~rLaa~i~----~~-~~~~i~~~~~y~~~~f~~dLk~~~----------------~~ag~~~~~ 90 (268)
T PF12780_consen 32 GHALLVGVGGSGRQSLARLAAFIC----GY-EVFQIEITKGYSIKDFKEDLKKAL----------------QKAGIKGKP 90 (268)
T ss_dssp EEEEEECTTTSCHHHHHHHHHHHT----TE-EEE-TTTSTTTHHHHHHHHHHHHH----------------HHHHCS-S-
T ss_pred CCeEEecCCCccHHHHHHHHHHHh----cc-ceEEEEeeCCcCHHHHHHHHHHHH----------------HHHhccCCC
Confidence 455699999999999998765411 11 112233445555444322221111 123346788
Q ss_pred EEEEEeccccCCccCHHhHHHhhc
Q 048765 277 FLLVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 277 ~LlVlDdv~~~~~~~~~~l~~~l~ 300 (314)
..+++.|-+-.+..-++.+...+.
T Consensus 91 ~vfll~d~qi~~~~fLe~in~LL~ 114 (268)
T PF12780_consen 91 TVFLLTDSQIVDESFLEDINSLLS 114 (268)
T ss_dssp EEEEEECCCSSSCHHHHHHHHHHH
T ss_pred eEEEecCcccchHhHHHHHHHHHh
Confidence 888888864433233455555443
No 477
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.20 E-value=0.035 Score=48.00 Aligned_cols=39 Identities=31% Similarity=0.324 Sum_probs=25.9
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET 237 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 237 (314)
++|+|.|-||+||||++..+...... .=..++-|++...
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~--~G~kVlliD~Dpq 40 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAE--MGKKVMIVGCDPK 40 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHh--CCCeEEEEEcCCC
Confidence 47888899999999999887663322 1123555655433
No 478
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.20 E-value=0.015 Score=46.22 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+-|.++||.|+||||+.+.++.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk 24 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAK 24 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHH
Confidence 3578999999999999999865
No 479
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.19 E-value=0.024 Score=49.22 Aligned_cols=23 Identities=43% Similarity=0.588 Sum_probs=19.7
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.|+|+|-||+||||++..+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~ 23 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAA 23 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHH
Confidence 36899999999999999887664
No 480
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=95.19 E-value=0.014 Score=58.78 Aligned_cols=114 Identities=20% Similarity=0.209 Sum_probs=60.3
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcC---ceeEEEEcCccc-----cHH-HHHHHHHHHhcCCCCCCCcHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKF---DKILWVCVSETF-----EEF-RVAKAMVEALDGHESHLGEFQSLL 265 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~-----~~~-~~~~~i~~~~~~~~~~~~~~~~~~ 265 (314)
...-+.|+|.+|+||||+.+.+.-... .+.+ +..+++.+.... ... .+...+...+..... .....
T Consensus 221 ~~~~~~Ilg~pGsGKTtfl~~lA~~~~-~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~ 295 (824)
T COG5635 221 KYAKLLILGAPGSGKTTFLQRLALWLA-QRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLI 295 (824)
T ss_pred hhhheeeecCCCCCceehHHHHHHHhc-cCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhh
Confidence 345789999999999999988754221 1222 334444332110 011 222222222222211 11112
Q ss_pred HHHHHHccCceEEEEEeccccCCccC----HHhHHHhhccCCCCceEEEeccC
Q 048765 266 RHIYESIAGKSFLLVLDDVWDGNYVK----WEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 266 ~~l~~~L~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
....+.++..++|+.+|+++...... ...+...+ ...+.+++|+|+|.
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~-~~~~~~~~iltcR~ 347 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREINKFL-QEYPDAQVLLTCRP 347 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHh-hhccCCeEEEEecc
Confidence 22257788999999999986532111 11222222 23558899999984
No 481
>PRK06820 type III secretion system ATPase; Validated
Probab=95.19 E-value=0.18 Score=46.60 Aligned_cols=83 Identities=24% Similarity=0.341 Sum_probs=46.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHh-cCC----------CCCCCcHH--
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEAL-DGH----------ESHLGEFQ-- 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~-~~~----------~~~~~~~~-- 262 (314)
-..++|+|..|+|||||++.+.... +.+..+..-+.+... + ...+.+.. ... ..+.....
T Consensus 163 Gqri~I~G~sG~GKStLl~~I~~~~----~~dv~V~~~iGergr--E-v~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~ 235 (440)
T PRK06820 163 GQRIGIFAAAGVGKSTLLGMLCADS----AADVMVLALIGERGR--E-VREFLEQVLTPEARARTVVVVATSDRPALERL 235 (440)
T ss_pred CCEEEEECCCCCChHHHHHHHhccC----CCCEEEEEEEccChH--H-HHHHHHHhhccCCceeEEEEEeCCCCCHHHHH
Confidence 3478999999999999999887632 234445555555422 2 22333322 111 00111111
Q ss_pred ---HHHHHHHHHc--cCceEEEEEeccc
Q 048765 263 ---SLLRHIYESI--AGKSFLLVLDDVW 285 (314)
Q Consensus 263 ---~~~~~l~~~L--~~kr~LlVlDdv~ 285 (314)
.....+.+++ +++..||++||+-
T Consensus 236 ~a~~~a~tiAEyfrd~G~~VLl~~Dslt 263 (440)
T PRK06820 236 KGLSTATTIAEYFRDRGKKVLLMADSLT 263 (440)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccchh
Confidence 1223344555 6899999999993
No 482
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=95.18 E-value=0.015 Score=45.79 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-|.++|.+|+|||||++.+..+
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
No 483
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.18 E-value=0.017 Score=49.29 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-.+++|+|+.|+|||||.+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999998865
No 484
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.18 E-value=0.017 Score=46.70 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=20.1
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++.|+|+.|+|||||++.++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 485
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.17 E-value=0.015 Score=47.47 Aligned_cols=20 Identities=35% Similarity=0.426 Sum_probs=18.4
Q ss_pred EEEEccCCCChHHHHHHhhc
Q 048765 199 ISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~ 218 (314)
|.|.|++|+||||+++.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998876
No 486
>PLN02924 thymidylate kinase
Probab=95.16 E-value=0.14 Score=42.88 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHh
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEE 221 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~ 221 (314)
..-..|+|-|..|+||||+++.+....+
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999987544
No 487
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=95.16 E-value=0.021 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...|+++|..|+|||||++.+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999988653
No 488
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.16 E-value=0.017 Score=46.05 Aligned_cols=21 Identities=48% Similarity=0.689 Sum_probs=19.4
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.|.|+.|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 489
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.16 E-value=0.013 Score=46.58 Aligned_cols=20 Identities=40% Similarity=0.431 Sum_probs=16.5
Q ss_pred EEEEccCCCChHHHHHHhhc
Q 048765 199 ISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~ 218 (314)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998875
No 490
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.16 E-value=0.17 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+-..++|+|..|+|||||++.+..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998854
No 491
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=95.15 E-value=0.029 Score=50.08 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=34.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|.+..+..|+-.+... ...-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 46889888888776666542 245577999999999999999865
No 492
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=95.14 E-value=0.019 Score=45.34 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++++|+|+-++|||||...+..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHH
Confidence 47999999999999999999876
No 493
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.14 E-value=0.014 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3679999999999999998764
No 494
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.14 E-value=0.036 Score=54.13 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+-+.++|++|+|||++++.+..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3488999999999999999976
No 495
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.13 E-value=0.2 Score=45.25 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=30.9
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF 238 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 238 (314)
.++.|.|.+|+|||.||-.++.............+++.+..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l 43 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPL 43 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchH
Confidence 578899999999999999998844214455666677665543
No 496
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.13 E-value=0.024 Score=54.01 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=35.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999998888776542 2345678999999999999999763
No 497
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.13 E-value=0.021 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.112 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...++.|.|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 357899999999999999988754
No 498
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.12 E-value=0.12 Score=47.76 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=46.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccH-HHHHHHHHHHhcCC----------CCCCCcHH-
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEE-FRVAKAMVEALDGH----------ESHLGEFQ- 262 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~i~~~~~~~----------~~~~~~~~- 262 (314)
+-..++|+|..|+|||||++.+.... .-+.....-+.+...- .++... .++.. ..+....+
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~----~~~v~vi~~iGergrev~e~~~~---~l~~~l~~tvvV~atsddsp~~R~ 228 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGC----LAPIKVVALIGERGREIPEFIEK---NLGGDLENTVIVVATSDDSPLMRK 228 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc----CCCEEEEEeeCccchhHHHHHHH---HhcCcccceEEEEECCCCCHHHhh
Confidence 34588999999999999999987632 1233444444443322 222222 22221 00111111
Q ss_pred ---HHHHHHHHHc--cCceEEEEEecc
Q 048765 263 ---SLLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 263 ---~~~~~l~~~L--~~kr~LlVlDdv 284 (314)
.....+.+++ +++..||++||+
T Consensus 229 ~~~~~a~~iAEyFrd~G~~Vll~~Dsl 255 (434)
T PRK08472 229 YGAFCAMSVAEYFKNQGLDVLFIMDSV 255 (434)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEecccc
Confidence 1123344555 689999999999
No 499
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.12 E-value=0.22 Score=43.75 Aligned_cols=102 Identities=8% Similarity=0.035 Sum_probs=58.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchH--------hhhhcCceeEEEEc-CccccHHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHE--------EVIRKFDKILWVCV-SETFEEFRVAKAMVEALDGHESHLGEFQSLLR 266 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~--------~~~~~F~~~~wv~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 266 (314)
.++..++|..|.||+++|..+..-. ....|-+-..+++. +.....+++ +++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC-----------
Confidence 4566699999999999998886521 11112212233321 111222222 12222221110
Q ss_pred HHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 267 HIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 267 ~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
+-.+++-++|+|++...+....+.|...+...+..+.+|++|.
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 0025788999999987765677889899987777777777663
No 500
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.11 E-value=0.051 Score=49.28 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
...+.|.|.||+|||+|.+.+.+..
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHh
Confidence 4688999999999999999987743
Done!