Query 048765
Match_columns 314
No_of_seqs 204 out of 2037
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 22:43:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.7E-24 5.9E-29 204.7 12.6 132 172-314 131-274 (549)
2 1vt4_I APAF-1 related killer D 99.8 8.7E-21 3E-25 185.1 10.3 130 171-314 130-274 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.8 6.3E-20 2.1E-24 188.6 14.8 136 166-314 121-266 (1249)
4 3qfl_A MLA10; coiled-coil, (CC 99.8 1.8E-20 6.3E-25 139.1 5.1 80 4-87 1-82 (115)
5 1z6t_A APAF-1, apoptotic prote 99.8 1.5E-18 5.2E-23 165.6 12.7 133 168-314 123-266 (591)
6 1w5s_A Origin recognition comp 99.4 1.2E-12 4.2E-17 118.9 11.5 120 168-287 21-150 (412)
7 2qby_B CDC6 homolog 3, cell di 99.3 1.3E-11 4.5E-16 111.1 11.3 143 169-313 20-172 (384)
8 1fnn_A CDC6P, cell division co 99.3 4.4E-11 1.5E-15 107.7 13.5 143 169-313 17-167 (389)
9 2v1u_A Cell division control p 99.2 6.9E-11 2.4E-15 106.3 13.3 143 169-313 19-175 (387)
10 2qen_A Walker-type ATPase; unk 99.2 4.8E-11 1.7E-15 105.8 10.1 132 166-313 9-172 (350)
11 2qby_A CDC6 homolog 1, cell di 99.2 8.7E-11 3E-15 105.5 10.5 142 168-313 19-171 (386)
12 2fna_A Conserved hypothetical 99.1 4.8E-10 1.6E-14 99.5 13.5 132 167-314 11-179 (357)
13 2chg_A Replication factor C sm 99.1 1.8E-09 6.2E-14 89.0 13.3 124 169-313 17-140 (226)
14 1njg_A DNA polymerase III subu 99.0 2.1E-09 7.3E-14 89.8 11.6 132 169-313 23-164 (250)
15 3te6_A Regulatory protein SIR3 99.0 3E-09 1E-13 92.7 11.7 126 169-299 20-154 (318)
16 1sxj_B Activator 1 37 kDa subu 98.9 8.9E-09 3.1E-13 90.1 10.1 124 169-313 21-145 (323)
17 1iqp_A RFCS; clamp loader, ext 98.8 3.2E-08 1.1E-12 86.7 10.2 123 169-313 25-148 (327)
18 1jbk_A CLPB protein; beta barr 98.8 7.3E-08 2.5E-12 77.3 11.5 45 169-219 22-66 (195)
19 2p65_A Hypothetical protein PF 98.6 4E-07 1.4E-11 72.6 10.8 45 169-219 22-66 (187)
20 3n70_A Transport activator; si 98.5 7.2E-08 2.5E-12 74.4 4.8 113 170-313 2-114 (145)
21 3ec2_A DNA replication protein 98.5 4.6E-07 1.6E-11 72.4 9.2 119 175-313 20-141 (180)
22 2chq_A Replication factor C sm 98.4 3.7E-07 1.3E-11 79.5 7.6 120 169-313 17-140 (319)
23 1jr3_A DNA polymerase III subu 98.4 9.9E-07 3.4E-11 78.7 10.4 133 169-313 16-157 (373)
24 2w58_A DNAI, primosome compone 98.4 6.4E-07 2.2E-11 72.9 8.1 117 177-313 37-157 (202)
25 1sxj_D Activator 1 41 kDa subu 98.4 2.4E-06 8.2E-11 75.6 11.2 133 169-313 37-171 (353)
26 3u61_B DNA polymerase accessor 98.3 1.7E-06 5.9E-11 75.7 9.1 118 169-313 26-144 (324)
27 3co5_A Putative two-component 98.3 6.8E-07 2.3E-11 68.7 5.3 109 170-313 5-114 (143)
28 2z4s_A Chromosomal replication 98.3 8.7E-06 3E-10 74.4 12.5 102 196-314 130-236 (440)
29 3syl_A Protein CBBX; photosynt 98.3 7.5E-06 2.6E-10 71.0 11.5 124 170-312 32-176 (309)
30 3h4m_A Proteasome-activating n 98.2 2.4E-06 8.1E-11 73.4 8.1 51 168-218 16-73 (285)
31 3bos_A Putative DNA replicatio 98.2 1E-06 3.4E-11 73.4 5.4 112 169-313 28-146 (242)
32 1l8q_A Chromosomal replication 98.2 7.9E-06 2.7E-10 71.5 10.1 101 195-313 36-139 (324)
33 1sxj_E Activator 1 40 kDa subu 98.2 8.3E-06 2.8E-10 72.2 9.8 44 169-218 14-58 (354)
34 1hqc_A RUVB; extended AAA-ATPa 98.1 2.8E-06 9.6E-11 74.3 6.4 104 169-300 12-115 (324)
35 4fcw_A Chaperone protein CLPB; 98.1 8.6E-06 2.9E-10 70.7 9.3 123 170-301 18-145 (311)
36 3pvs_A Replication-associated 98.1 9.1E-06 3.1E-10 74.3 9.6 103 169-301 26-132 (447)
37 2qz4_A Paraplegin; AAA+, SPG7, 98.1 9.3E-06 3.2E-10 68.6 9.0 50 169-218 6-61 (262)
38 1sxj_C Activator 1 40 kDa subu 98.1 1.3E-05 4.5E-10 70.7 10.1 122 169-312 25-147 (340)
39 2kjq_A DNAA-related protein; s 98.1 2.7E-06 9.1E-11 65.8 4.8 86 196-313 36-123 (149)
40 3uk6_A RUVB-like 2; hexameric 98.1 3.7E-05 1.3E-09 68.3 12.7 47 169-219 44-93 (368)
41 2gno_A DNA polymerase III, gam 98.1 2.8E-05 9.4E-10 67.5 11.0 116 174-313 2-120 (305)
42 3pfi_A Holliday junction ATP-d 98.1 2.2E-05 7.6E-10 69.0 10.5 103 169-300 29-131 (338)
43 1d2n_A N-ethylmaleimide-sensit 98.0 1.5E-05 5.2E-10 67.9 9.0 47 170-219 34-87 (272)
44 3eie_A Vacuolar protein sortin 98.0 3.6E-05 1.2E-09 67.3 11.5 50 169-218 18-73 (322)
45 2bjv_A PSP operon transcriptio 98.0 7.8E-06 2.7E-10 69.4 6.6 132 169-313 6-149 (265)
46 1sxj_A Activator 1 95 kDa subu 98.0 2.7E-05 9.3E-10 72.7 10.1 134 169-312 39-186 (516)
47 1a5t_A Delta prime, HOLB; zinc 98.0 7.3E-05 2.5E-09 65.7 12.0 116 175-313 8-146 (334)
48 2cvh_A DNA repair and recombin 97.9 6.6E-05 2.3E-09 61.4 10.6 86 195-286 19-116 (220)
49 1qvr_A CLPB protein; coiled co 97.9 4E-05 1.4E-09 75.9 9.8 45 169-219 170-214 (854)
50 1ojl_A Transcriptional regulat 97.9 9.2E-06 3.2E-10 70.5 4.5 63 169-237 2-64 (304)
51 3cf0_A Transitional endoplasmi 97.8 9E-05 3.1E-09 64.1 10.0 50 169-218 15-71 (301)
52 2qgz_A Helicase loader, putati 97.8 2.2E-05 7.6E-10 68.2 5.9 54 177-234 136-189 (308)
53 1ofh_A ATP-dependent HSL prote 97.8 9E-05 3.1E-09 64.0 8.8 50 169-218 15-72 (310)
54 2qp9_X Vacuolar protein sortin 97.7 9.5E-05 3.3E-09 65.5 9.1 51 169-219 51-107 (355)
55 3pxi_A Negative regulator of g 97.7 4.5E-05 1.5E-09 74.6 6.5 124 169-313 491-628 (758)
56 3hu3_A Transitional endoplasmi 97.7 0.0001 3.5E-09 68.1 8.2 50 169-218 204-260 (489)
57 1n0w_A DNA repair protein RAD5 97.6 0.00022 7.4E-09 59.3 9.3 90 196-286 24-130 (243)
58 3pxg_A Negative regulator of g 97.6 0.00011 3.8E-09 67.6 8.1 44 169-218 180-223 (468)
59 2vhj_A Ntpase P4, P4; non- hyd 97.6 3.1E-05 1.1E-09 67.0 3.9 70 196-287 123-194 (331)
60 1qvr_A CLPB protein; coiled co 97.6 8.9E-05 3E-09 73.4 7.7 124 169-302 558-687 (854)
61 3t15_A Ribulose bisphosphate c 97.6 0.00015 5.1E-09 62.5 8.3 26 194-219 34-59 (293)
62 3b9p_A CG5977-PA, isoform A; A 97.6 0.00034 1.2E-08 60.1 10.6 50 169-218 21-76 (297)
63 3d8b_A Fidgetin-like protein 1 97.6 0.00016 5.6E-09 64.1 8.5 50 169-218 84-139 (357)
64 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.0005 1.7E-08 60.0 10.9 50 169-218 12-67 (322)
65 4b4t_L 26S protease subunit RP 97.6 0.0008 2.7E-08 61.0 12.5 97 169-286 181-285 (437)
66 2w0m_A SSO2452; RECA, SSPF, un 97.6 0.0004 1.4E-08 57.1 9.8 113 196-313 23-166 (235)
67 1r6b_X CLPA protein; AAA+, N-t 97.6 0.00051 1.8E-08 67.1 11.8 45 169-219 186-230 (758)
68 3vfd_A Spastin; ATPase, microt 97.5 0.00044 1.5E-08 62.0 9.8 50 169-218 115-170 (389)
69 2zan_A Vacuolar protein sortin 97.5 0.00029 9.9E-09 64.4 8.5 50 169-218 134-189 (444)
70 1lv7_A FTSH; alpha/beta domain 97.4 0.00055 1.9E-08 57.5 9.2 50 169-218 12-67 (257)
71 2b8t_A Thymidine kinase; deoxy 97.4 0.00018 6E-09 59.3 5.7 111 195-313 11-124 (223)
72 3hr8_A Protein RECA; alpha and 97.4 0.00084 2.9E-08 59.2 10.0 85 195-286 60-150 (356)
73 1g5t_A COB(I)alamin adenosyltr 97.4 0.0016 5.6E-08 52.1 10.8 116 197-314 29-162 (196)
74 2r44_A Uncharacterized protein 97.4 0.00014 4.8E-09 63.7 5.1 42 169-218 27-68 (331)
75 2ce7_A Cell division protein F 97.4 0.00079 2.7E-08 61.8 10.1 98 169-286 16-119 (476)
76 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00025 8.4E-09 69.4 7.1 121 169-301 458-583 (758)
77 1v5w_A DMC1, meiotic recombina 97.3 0.0016 5.5E-08 57.3 10.7 91 194-285 120-229 (343)
78 4b4t_J 26S protease regulatory 97.3 0.00093 3.2E-08 59.7 8.8 97 169-286 148-252 (405)
79 4b4t_M 26S protease regulatory 97.3 0.00073 2.5E-08 61.1 8.2 50 169-218 181-237 (434)
80 2c9o_A RUVB-like 1; hexameric 97.3 0.00091 3.1E-08 61.3 9.0 50 169-219 37-86 (456)
81 3io5_A Recombination and repai 97.3 0.0019 6.4E-08 55.8 10.2 85 198-287 30-123 (333)
82 4b4t_K 26S protease regulatory 97.3 0.00095 3.2E-08 60.3 8.8 50 169-218 172-228 (428)
83 3m6a_A ATP-dependent protease 97.2 0.00048 1.6E-08 64.6 7.0 50 169-218 81-130 (543)
84 2i1q_A DNA repair and recombin 97.2 0.0011 3.8E-08 57.7 8.9 90 195-285 97-214 (322)
85 3pxi_A Negative regulator of g 97.2 0.00075 2.6E-08 65.9 8.1 45 169-219 180-224 (758)
86 2zr9_A Protein RECA, recombina 97.2 0.0015 5.2E-08 57.6 9.4 85 195-286 60-150 (349)
87 2z43_A DNA repair and recombin 97.2 0.0011 3.8E-08 57.8 8.4 89 196-285 107-213 (324)
88 2ehv_A Hypothetical protein PH 97.2 0.00098 3.4E-08 55.5 7.6 39 196-235 30-68 (251)
89 3lda_A DNA repair protein RAD5 97.1 0.0021 7.2E-08 57.7 9.9 91 195-286 177-284 (400)
90 4b4t_H 26S protease regulatory 97.1 0.0016 5.4E-08 59.1 8.9 97 169-286 209-313 (467)
91 4b4t_I 26S protease regulatory 97.1 0.0016 5.3E-08 58.6 8.6 50 169-218 182-238 (437)
92 1xp8_A RECA protein, recombina 97.1 0.0021 7.3E-08 56.9 9.4 84 196-286 74-163 (366)
93 1cr0_A DNA primase/helicase; R 97.1 0.0027 9.1E-08 54.5 9.8 39 196-235 35-73 (296)
94 3cf2_A TER ATPase, transitiona 97.1 0.0023 7.9E-08 62.3 10.2 97 169-286 204-308 (806)
95 1u94_A RECA protein, recombina 97.1 0.0022 7.5E-08 56.7 9.1 85 195-286 62-152 (356)
96 1um8_A ATP-dependent CLP prote 97.0 0.0017 5.8E-08 57.8 8.3 23 196-218 72-94 (376)
97 1ypw_A Transitional endoplasmi 97.0 0.0013 4.5E-08 64.5 7.9 50 169-218 204-260 (806)
98 1rz3_A Hypothetical protein rb 97.0 0.00093 3.2E-08 54.0 5.3 42 174-218 3-44 (201)
99 2dr3_A UPF0273 protein PH0284; 96.9 0.0062 2.1E-07 50.4 10.4 39 196-236 23-61 (247)
100 2px0_A Flagellar biosynthesis 96.9 0.0045 1.5E-07 53.2 9.3 26 195-220 104-129 (296)
101 1odf_A YGR205W, hypothetical 3 96.8 0.013 4.6E-07 50.1 11.9 54 194-247 29-83 (290)
102 3bh0_A DNAB-like replicative h 96.8 0.01 3.5E-07 51.5 11.1 50 195-248 67-116 (315)
103 2orw_A Thymidine kinase; TMTK, 96.8 0.00051 1.7E-08 54.8 2.4 106 197-313 4-111 (184)
104 1pzn_A RAD51, DNA repair and r 96.7 0.0068 2.3E-07 53.4 9.5 91 194-285 129-241 (349)
105 3c8u_A Fructokinase; YP_612366 96.7 0.0015 5.1E-08 53.0 4.8 39 177-219 7-45 (208)
106 4a74_A DNA repair and recombin 96.7 0.0067 2.3E-07 49.6 8.7 47 195-241 24-74 (231)
107 1nlf_A Regulatory protein REPA 96.7 0.0062 2.1E-07 51.7 8.6 43 196-238 30-80 (279)
108 1vma_A Cell division protein F 96.6 0.01 3.5E-07 51.2 9.7 27 194-220 102-128 (306)
109 1in4_A RUVB, holliday junction 96.6 0.0013 4.6E-08 57.5 3.9 49 169-218 25-73 (334)
110 2x8a_A Nuclear valosin-contain 96.6 0.0049 1.7E-07 52.3 7.3 20 199-218 47-66 (274)
111 3dm5_A SRP54, signal recogniti 96.6 0.021 7.1E-07 51.7 11.6 25 195-219 99-123 (443)
112 1sky_E F1-ATPase, F1-ATP synth 96.6 0.011 3.7E-07 53.9 9.6 87 198-285 153-255 (473)
113 4a1f_A DNAB helicase, replicat 96.6 0.0098 3.4E-07 52.0 9.0 50 196-249 46-95 (338)
114 3kl4_A SRP54, signal recogniti 96.5 0.022 7.5E-07 51.5 11.6 25 195-219 96-120 (433)
115 3upu_A ATP-dependent DNA helic 96.5 0.0049 1.7E-07 56.4 7.5 22 198-219 47-68 (459)
116 3lw7_A Adenylate kinase relate 96.5 0.0013 4.3E-08 51.4 3.1 20 197-216 2-21 (179)
117 1zp6_A Hypothetical protein AT 96.5 0.0016 5.4E-08 51.9 3.5 23 196-218 9-31 (191)
118 1qhx_A CPT, protein (chloramph 96.4 0.0015 5.1E-08 51.4 2.9 22 197-218 4-25 (178)
119 3kb2_A SPBC2 prophage-derived 96.4 0.0015 5.2E-08 50.9 2.9 22 197-218 2-23 (173)
120 1ly1_A Polynucleotide kinase; 96.4 0.0018 6.3E-08 50.8 3.3 22 197-218 3-24 (181)
121 3tqc_A Pantothenate kinase; bi 96.4 0.016 5.4E-07 50.3 9.4 46 171-218 69-114 (321)
122 3ice_A Transcription terminati 96.4 0.0027 9.3E-08 56.2 4.5 85 196-284 174-270 (422)
123 2r8r_A Sensor protein; KDPD, P 96.4 0.014 4.9E-07 47.7 8.4 102 197-312 7-124 (228)
124 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0094 3.2E-07 55.0 8.2 51 169-219 31-87 (499)
125 3vaa_A Shikimate kinase, SK; s 96.4 0.0018 6E-08 52.2 3.0 23 196-218 25-47 (199)
126 2r62_A Cell division protease 96.4 0.0019 6.4E-08 54.5 3.2 51 169-219 11-67 (268)
127 2xxa_A Signal recognition part 96.3 0.046 1.6E-06 49.5 12.5 43 178-220 79-124 (433)
128 3uie_A Adenylyl-sulfate kinase 96.3 0.0027 9.1E-08 51.1 3.8 25 195-219 24-48 (200)
129 3hws_A ATP-dependent CLP prote 96.3 0.003 1E-07 56.0 4.4 49 170-218 16-73 (363)
130 1kgd_A CASK, peripheral plasma 96.3 0.0021 7.4E-08 50.8 3.0 23 196-218 5-27 (180)
131 1kag_A SKI, shikimate kinase I 96.3 0.0018 6.2E-08 50.6 2.5 22 197-218 5-26 (173)
132 1zu4_A FTSY; GTPase, signal re 96.3 0.045 1.5E-06 47.5 11.6 26 194-219 103-128 (320)
133 2rhm_A Putative kinase; P-loop 96.3 0.0026 9E-08 50.6 3.4 24 195-218 4-27 (193)
134 2ffh_A Protein (FFH); SRP54, s 96.3 0.023 8E-07 51.2 9.9 24 196-219 98-121 (425)
135 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0041 1.4E-07 57.5 5.0 41 170-218 23-63 (500)
136 1j8m_F SRP54, signal recogniti 96.2 0.032 1.1E-06 47.8 10.3 24 196-219 98-121 (297)
137 4gp7_A Metallophosphoesterase; 96.2 0.0027 9.1E-08 49.8 3.3 23 196-218 9-31 (171)
138 3trf_A Shikimate kinase, SK; a 96.2 0.0025 8.4E-08 50.5 2.9 23 196-218 5-27 (185)
139 1knq_A Gluconate kinase; ALFA/ 96.2 0.0036 1.2E-07 49.0 3.8 24 195-218 7-30 (175)
140 1nks_A Adenylate kinase; therm 96.2 0.0028 9.7E-08 50.3 3.2 22 197-218 2-23 (194)
141 1zuh_A Shikimate kinase; alpha 96.2 0.0026 8.8E-08 49.5 2.9 25 194-218 5-29 (168)
142 3tr0_A Guanylate kinase, GMP k 96.2 0.0028 9.6E-08 51.0 3.2 23 196-218 7-29 (205)
143 3e70_C DPA, signal recognition 96.2 0.029 9.9E-07 48.9 9.8 26 194-219 127-152 (328)
144 2bdt_A BH3686; alpha-beta prot 96.2 0.0032 1.1E-07 50.0 3.4 22 197-218 3-24 (189)
145 4eun_A Thermoresistant glucoki 96.1 0.0028 9.6E-08 51.0 3.1 23 196-218 29-51 (200)
146 1g8p_A Magnesium-chelatase 38 96.1 0.003 1E-07 55.3 3.4 44 169-218 24-67 (350)
147 3t61_A Gluconokinase; PSI-biol 96.1 0.0024 8.2E-08 51.4 2.5 23 196-218 18-40 (202)
148 2p5t_B PEZT; postsegregational 96.1 0.0053 1.8E-07 51.4 4.7 40 178-218 15-54 (253)
149 3asz_A Uridine kinase; cytidin 96.1 0.0035 1.2E-07 50.7 3.5 24 195-218 5-28 (211)
150 3cmu_A Protein RECA, recombina 96.1 0.017 5.7E-07 61.5 9.2 84 195-285 1426-1515(2050)
151 1ye8_A Protein THEP1, hypothet 96.1 0.0031 1.1E-07 49.9 3.0 23 198-220 2-24 (178)
152 3tau_A Guanylate kinase, GMP k 96.1 0.0033 1.1E-07 51.0 3.2 24 195-218 7-30 (208)
153 2yvu_A Probable adenylyl-sulfa 96.1 0.0083 2.8E-07 47.5 5.5 26 194-219 11-36 (186)
154 1uj2_A Uridine-cytidine kinase 96.1 0.0036 1.2E-07 52.4 3.4 25 194-218 20-44 (252)
155 1ukz_A Uridylate kinase; trans 96.1 0.0041 1.4E-07 50.0 3.7 25 194-218 13-37 (203)
156 2ze6_A Isopentenyl transferase 96.0 0.0035 1.2E-07 52.5 3.3 22 197-218 2-23 (253)
157 3a00_A Guanylate kinase, GMP k 96.0 0.0027 9.2E-08 50.5 2.4 22 197-218 2-23 (186)
158 1uf9_A TT1252 protein; P-loop, 96.0 0.004 1.4E-07 49.9 3.5 25 194-218 6-30 (203)
159 3umf_A Adenylate kinase; rossm 96.0 0.0045 1.5E-07 50.6 3.8 25 194-218 27-51 (217)
160 2j41_A Guanylate kinase; GMP, 96.0 0.0035 1.2E-07 50.4 3.1 23 196-218 6-28 (207)
161 1kht_A Adenylate kinase; phosp 96.0 0.0035 1.2E-07 49.7 3.0 22 197-218 4-25 (192)
162 1tev_A UMP-CMP kinase; ploop, 96.0 0.0039 1.3E-07 49.6 3.3 23 196-218 3-25 (196)
163 2yhs_A FTSY, cell division pro 96.0 0.071 2.4E-06 48.9 11.9 26 194-219 291-316 (503)
164 1y63_A LMAJ004144AAA protein; 96.0 0.0037 1.3E-07 49.5 3.1 24 195-218 9-32 (184)
165 2plr_A DTMP kinase, probable t 96.0 0.014 4.6E-07 47.0 6.6 23 197-219 5-27 (213)
166 2j37_W Signal recognition part 96.0 0.09 3.1E-06 48.5 12.7 42 178-219 80-124 (504)
167 2qt1_A Nicotinamide riboside k 96.0 0.0046 1.6E-07 49.9 3.6 25 194-218 19-43 (207)
168 3iij_A Coilin-interacting nucl 96.0 0.003 1E-07 49.8 2.4 23 196-218 11-33 (180)
169 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0072 2.5E-07 53.0 4.9 45 173-219 3-47 (359)
170 2jaq_A Deoxyguanosine kinase; 95.9 0.0039 1.3E-07 50.0 3.0 21 198-218 2-22 (205)
171 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0044 1.5E-07 52.2 3.4 23 196-218 4-26 (260)
172 2q6t_A DNAB replication FORK h 95.9 0.049 1.7E-06 49.5 10.7 52 195-249 199-250 (444)
173 1jjv_A Dephospho-COA kinase; P 95.9 0.0046 1.6E-07 49.9 3.4 22 197-218 3-24 (206)
174 2z0h_A DTMP kinase, thymidylat 95.9 0.017 5.9E-07 45.8 6.9 22 198-219 2-23 (197)
175 2c95_A Adenylate kinase 1; tra 95.9 0.0039 1.3E-07 49.7 3.0 23 196-218 9-31 (196)
176 2bbw_A Adenylate kinase 4, AK4 95.9 0.004 1.4E-07 51.9 3.1 23 196-218 27-49 (246)
177 1via_A Shikimate kinase; struc 95.9 0.0031 1.1E-07 49.5 2.3 22 197-218 5-26 (175)
178 2r2a_A Uncharacterized protein 95.9 0.012 4.3E-07 47.3 5.8 21 197-217 6-26 (199)
179 3jvv_A Twitching mobility prot 95.9 0.0047 1.6E-07 54.5 3.6 106 196-313 123-229 (356)
180 3cm0_A Adenylate kinase; ATP-b 95.9 0.0051 1.8E-07 48.6 3.5 23 196-218 4-26 (186)
181 2if2_A Dephospho-COA kinase; a 95.9 0.0041 1.4E-07 50.1 3.0 22 197-218 2-23 (204)
182 1lvg_A Guanylate kinase, GMP k 95.9 0.0034 1.1E-07 50.5 2.4 22 197-218 5-26 (198)
183 1cke_A CK, MSSA, protein (cyti 95.9 0.0043 1.5E-07 50.8 3.1 22 197-218 6-27 (227)
184 3tlx_A Adenylate kinase 2; str 95.9 0.0073 2.5E-07 50.2 4.5 24 195-218 28-51 (243)
185 1xjc_A MOBB protein homolog; s 95.9 0.0088 3E-07 46.7 4.7 25 195-219 3-27 (169)
186 2qor_A Guanylate kinase; phosp 95.9 0.0034 1.2E-07 50.7 2.4 24 195-218 11-34 (204)
187 2cdn_A Adenylate kinase; phosp 95.9 0.0049 1.7E-07 49.5 3.3 25 194-218 18-42 (201)
188 1gvn_B Zeta; postsegregational 95.9 0.0089 3E-07 51.1 5.1 25 194-218 31-55 (287)
189 2r6a_A DNAB helicase, replicat 95.8 0.038 1.3E-06 50.5 9.4 41 195-236 202-242 (454)
190 1ls1_A Signal recognition part 95.8 0.057 1.9E-06 46.2 10.0 24 196-219 98-121 (295)
191 2pbr_A DTMP kinase, thymidylat 95.8 0.022 7.5E-07 45.1 7.0 21 198-218 2-22 (195)
192 1htw_A HI0065; nucleotide-bind 95.8 0.0059 2E-07 47.3 3.4 24 196-219 33-56 (158)
193 1q57_A DNA primase/helicase; d 95.8 0.042 1.4E-06 50.8 9.8 51 195-248 241-291 (503)
194 3e1s_A Exodeoxyribonuclease V, 95.8 0.01 3.5E-07 55.9 5.6 23 197-219 205-227 (574)
195 1qf9_A UMP/CMP kinase, protein 95.8 0.0065 2.2E-07 48.1 3.8 23 196-218 6-28 (194)
196 1znw_A Guanylate kinase, GMP k 95.8 0.0052 1.8E-07 49.7 3.2 23 196-218 20-42 (207)
197 1nn5_A Similar to deoxythymidy 95.8 0.02 6.7E-07 46.2 6.7 24 196-219 9-32 (215)
198 2iyv_A Shikimate kinase, SK; t 95.8 0.0036 1.2E-07 49.5 2.1 21 198-218 4-24 (184)
199 1aky_A Adenylate kinase; ATP:A 95.8 0.005 1.7E-07 50.3 3.0 23 196-218 4-26 (220)
200 3aez_A Pantothenate kinase; tr 95.8 0.0062 2.1E-07 52.7 3.7 26 194-219 88-113 (312)
201 2vli_A Antibiotic resistance p 95.7 0.0034 1.2E-07 49.5 1.8 23 196-218 5-27 (183)
202 2jeo_A Uridine-cytidine kinase 95.7 0.0065 2.2E-07 50.5 3.7 24 195-218 24-47 (245)
203 1e6c_A Shikimate kinase; phosp 95.7 0.0043 1.5E-07 48.4 2.3 22 197-218 3-24 (173)
204 2bwj_A Adenylate kinase 5; pho 95.7 0.0055 1.9E-07 48.9 3.0 23 196-218 12-34 (199)
205 3fwy_A Light-independent proto 95.7 0.0064 2.2E-07 52.7 3.5 40 194-235 46-85 (314)
206 2pt5_A Shikimate kinase, SK; a 95.6 0.0063 2.2E-07 47.2 3.0 21 198-218 2-22 (168)
207 2ewv_A Twitching motility prot 95.6 0.025 8.4E-07 50.2 7.2 25 195-219 135-159 (372)
208 2grj_A Dephospho-COA kinase; T 95.6 0.0081 2.8E-07 48.1 3.7 25 194-218 10-34 (192)
209 1z6g_A Guanylate kinase; struc 95.6 0.005 1.7E-07 50.3 2.4 23 196-218 23-45 (218)
210 2hf9_A Probable hydrogenase ni 95.6 0.012 4E-07 48.0 4.7 25 195-219 37-61 (226)
211 1rj9_A FTSY, signal recognitio 95.6 0.0066 2.3E-07 52.4 3.3 25 195-219 101-125 (304)
212 2pez_A Bifunctional 3'-phospho 95.6 0.0077 2.6E-07 47.4 3.4 24 195-218 4-27 (179)
213 3ney_A 55 kDa erythrocyte memb 95.6 0.007 2.4E-07 48.6 3.1 24 195-218 18-41 (197)
214 3zvl_A Bifunctional polynucleo 95.6 0.051 1.7E-06 49.0 9.2 25 194-218 256-280 (416)
215 1tf7_A KAIC; homohexamer, hexa 95.6 0.014 4.9E-07 54.3 5.7 114 195-313 280-415 (525)
216 2zts_A Putative uncharacterize 95.6 0.03 1E-06 46.1 7.2 49 196-247 30-78 (251)
217 4e22_A Cytidylate kinase; P-lo 95.6 0.0069 2.4E-07 50.7 3.2 22 196-217 27-48 (252)
218 1ex7_A Guanylate kinase; subst 95.6 0.0043 1.5E-07 49.4 1.8 21 198-218 3-23 (186)
219 3cmu_A Protein RECA, recombina 95.6 0.038 1.3E-06 58.8 9.2 86 195-287 382-473 (2050)
220 1zd8_A GTP:AMP phosphotransfer 95.5 0.0064 2.2E-07 49.9 2.8 23 196-218 7-29 (227)
221 2wsm_A Hydrogenase expression/ 95.5 0.0086 3E-07 48.7 3.5 40 174-219 14-53 (221)
222 1ixz_A ATP-dependent metallopr 95.5 0.0066 2.2E-07 50.7 2.8 21 199-219 52-72 (254)
223 2wwf_A Thymidilate kinase, put 95.5 0.0069 2.3E-07 48.9 2.9 24 196-219 10-33 (212)
224 3hjn_A DTMP kinase, thymidylat 95.5 0.04 1.4E-06 44.2 7.4 84 198-284 2-90 (197)
225 2f6r_A COA synthase, bifunctio 95.5 0.0088 3E-07 50.9 3.6 24 194-217 73-96 (281)
226 1s96_A Guanylate kinase, GMP k 95.5 0.0076 2.6E-07 49.3 3.1 25 194-218 14-38 (219)
227 2onk_A Molybdate/tungstate ABC 95.5 0.0077 2.6E-07 50.0 3.1 24 194-218 23-46 (240)
228 1jr3_D DNA polymerase III, del 95.5 0.069 2.4E-06 46.6 9.5 95 196-312 18-114 (343)
229 2ged_A SR-beta, signal recogni 95.5 0.012 4.2E-07 46.5 4.2 26 194-219 46-71 (193)
230 1m7g_A Adenylylsulfate kinase; 95.5 0.0093 3.2E-07 48.3 3.6 25 195-219 24-48 (211)
231 3cmw_A Protein RECA, recombina 95.5 0.036 1.2E-06 58.1 8.6 86 195-287 382-473 (1706)
232 3b9q_A Chloroplast SRP recepto 95.4 0.0094 3.2E-07 51.4 3.6 25 195-219 99-123 (302)
233 3llm_A ATP-dependent RNA helic 95.4 0.071 2.4E-06 43.8 8.9 89 197-286 77-187 (235)
234 3tif_A Uncharacterized ABC tra 95.4 0.0083 2.8E-07 49.7 3.2 23 196-218 31-53 (235)
235 2og2_A Putative signal recogni 95.4 0.018 6.1E-07 50.8 5.5 26 194-219 155-180 (359)
236 3p32_A Probable GTPase RV1496/ 95.4 0.017 5.9E-07 50.9 5.4 37 178-218 65-101 (355)
237 2v54_A DTMP kinase, thymidylat 95.4 0.0083 2.9E-07 48.1 3.0 23 196-218 4-26 (204)
238 2pcj_A ABC transporter, lipopr 95.4 0.0086 2.9E-07 49.2 3.0 22 197-218 31-52 (224)
239 2i3b_A HCR-ntpase, human cance 95.4 0.0074 2.5E-07 48.2 2.6 23 198-220 3-25 (189)
240 1zak_A Adenylate kinase; ATP:A 95.4 0.0069 2.4E-07 49.5 2.4 23 196-218 5-27 (222)
241 3fb4_A Adenylate kinase; psych 95.4 0.0089 3E-07 48.5 3.1 21 198-218 2-22 (216)
242 1gtv_A TMK, thymidylate kinase 95.4 0.004 1.4E-07 50.4 1.0 22 198-219 2-23 (214)
243 1yrb_A ATP(GTP)binding protein 95.3 0.013 4.6E-07 48.9 4.3 27 193-219 11-37 (262)
244 1vht_A Dephospho-COA kinase; s 95.3 0.011 3.7E-07 48.1 3.6 23 196-218 4-26 (218)
245 3b85_A Phosphate starvation-in 95.3 0.0081 2.8E-07 48.8 2.7 23 197-219 23-45 (208)
246 3cf2_A TER ATPase, transitiona 95.3 0.049 1.7E-06 53.1 8.5 50 169-218 477-533 (806)
247 1fx0_B ATP synthase beta chain 95.3 0.069 2.4E-06 48.8 8.8 88 196-284 165-275 (498)
248 4eaq_A DTMP kinase, thymidylat 95.3 0.031 1.1E-06 46.0 6.1 26 195-220 25-50 (229)
249 3dl0_A Adenylate kinase; phosp 95.3 0.0099 3.4E-07 48.2 3.1 21 198-218 2-22 (216)
250 1sq5_A Pantothenate kinase; P- 95.2 0.012 4.2E-07 50.8 3.7 25 194-218 78-102 (308)
251 1b0u_A Histidine permease; ABC 95.2 0.01 3.6E-07 49.9 3.2 23 196-218 32-54 (262)
252 3lnc_A Guanylate kinase, GMP k 95.2 0.0066 2.3E-07 50.0 1.9 22 196-217 27-48 (231)
253 3gfo_A Cobalt import ATP-bindi 95.2 0.011 3.6E-07 50.3 3.2 22 197-218 35-56 (275)
254 2vp4_A Deoxynucleoside kinase; 95.2 0.015 5.2E-07 47.8 4.1 25 194-218 18-42 (230)
255 2cbz_A Multidrug resistance-as 95.2 0.011 3.7E-07 49.0 3.2 23 196-218 31-53 (237)
256 2eyu_A Twitching motility prot 95.2 0.022 7.6E-07 47.9 5.1 24 195-218 24-47 (261)
257 1iy2_A ATP-dependent metallopr 95.2 0.0096 3.3E-07 50.5 2.8 21 199-219 76-96 (278)
258 1g6h_A High-affinity branched- 95.2 0.011 3.8E-07 49.6 3.2 23 196-218 33-55 (257)
259 1ji0_A ABC transporter; ATP bi 95.2 0.011 3.9E-07 49.0 3.2 22 197-218 33-54 (240)
260 1mv5_A LMRA, multidrug resista 95.1 0.013 4.3E-07 48.8 3.4 23 196-218 28-50 (243)
261 1tue_A Replication protein E1; 95.1 0.016 5.4E-07 46.7 3.7 38 177-219 44-81 (212)
262 4g1u_C Hemin import ATP-bindin 95.1 0.012 4E-07 49.8 3.1 23 196-218 37-59 (266)
263 2olj_A Amino acid ABC transpor 95.1 0.012 4.1E-07 49.6 3.2 23 196-218 50-72 (263)
264 2pze_A Cystic fibrosis transme 95.1 0.012 4.2E-07 48.4 3.2 22 197-218 35-56 (229)
265 2j9r_A Thymidine kinase; TK1, 95.1 0.055 1.9E-06 43.8 6.9 108 195-313 27-136 (214)
266 1sgw_A Putative ABC transporte 95.1 0.01 3.5E-07 48.4 2.6 22 197-218 36-57 (214)
267 3nwj_A ATSK2; P loop, shikimat 95.1 0.009 3.1E-07 50.0 2.3 22 197-218 49-70 (250)
268 2r9v_A ATP synthase subunit al 95.1 0.061 2.1E-06 49.3 7.8 85 197-285 176-277 (515)
269 2wji_A Ferrous iron transport 95.1 0.017 5.7E-07 44.6 3.7 22 197-218 4-25 (165)
270 1vpl_A ABC transporter, ATP-bi 95.1 0.013 4.3E-07 49.3 3.2 23 196-218 41-63 (256)
271 3a8t_A Adenylate isopentenyltr 95.0 0.015 5.3E-07 50.6 3.7 24 195-218 39-62 (339)
272 2d2e_A SUFC protein; ABC-ATPas 95.0 0.013 4.4E-07 49.0 3.2 22 197-218 30-51 (250)
273 3sr0_A Adenylate kinase; phosp 95.0 0.014 4.8E-07 47.2 3.3 21 198-218 2-22 (206)
274 1oix_A RAS-related protein RAB 95.0 0.012 4.3E-07 46.6 3.0 24 196-219 29-52 (191)
275 2ff7_A Alpha-hemolysin translo 95.0 0.013 4.4E-07 48.9 3.2 22 197-218 36-57 (247)
276 3ake_A Cytidylate kinase; CMP 95.0 0.013 4.4E-07 47.1 3.1 21 198-218 4-24 (208)
277 2f1r_A Molybdopterin-guanine d 95.0 0.0062 2.1E-07 47.8 1.1 24 197-220 3-26 (171)
278 2zej_A Dardarin, leucine-rich 95.0 0.013 4.4E-07 46.2 3.0 21 198-218 4-24 (184)
279 3be4_A Adenylate kinase; malar 95.0 0.01 3.5E-07 48.3 2.5 22 197-218 6-27 (217)
280 1ak2_A Adenylate kinase isoenz 95.0 0.013 4.6E-07 48.2 3.1 23 196-218 16-38 (233)
281 2zu0_C Probable ATP-dependent 95.0 0.014 4.7E-07 49.4 3.2 23 196-218 46-68 (267)
282 2ck3_D ATP synthase subunit be 95.0 0.18 6E-06 45.9 10.5 99 180-284 142-262 (482)
283 2xb4_A Adenylate kinase; ATP-b 95.0 0.014 4.7E-07 47.8 3.0 21 198-218 2-22 (223)
284 1np6_A Molybdopterin-guanine d 95.0 0.013 4.6E-07 46.0 2.9 24 196-219 6-29 (174)
285 1e4v_A Adenylate kinase; trans 94.9 0.013 4.6E-07 47.4 3.0 21 198-218 2-22 (214)
286 2qi9_C Vitamin B12 import ATP- 94.9 0.014 4.9E-07 48.7 3.2 22 197-218 27-48 (249)
287 2ghi_A Transport protein; mult 94.9 0.014 4.9E-07 49.0 3.2 23 196-218 46-68 (260)
288 2ixe_A Antigen peptide transpo 94.9 0.014 4.9E-07 49.4 3.2 23 196-218 45-67 (271)
289 2nq2_C Hypothetical ABC transp 94.9 0.014 4.9E-07 48.8 3.1 22 197-218 32-53 (253)
290 2yz2_A Putative ABC transporte 94.9 0.014 4.9E-07 49.2 3.2 23 196-218 33-55 (266)
291 3bgw_A DNAB-like replicative h 94.9 0.18 6.3E-06 45.7 10.7 39 195-235 196-234 (444)
292 3d3q_A TRNA delta(2)-isopenten 94.9 0.015 5.2E-07 50.7 3.3 22 197-218 8-29 (340)
293 2f9l_A RAB11B, member RAS onco 94.9 0.014 4.6E-07 46.7 2.8 24 196-219 5-28 (199)
294 2ihy_A ABC transporter, ATP-bi 94.9 0.015 5.1E-07 49.5 3.2 23 196-218 47-69 (279)
295 1g41_A Heat shock protein HSLU 94.9 0.026 8.9E-07 51.1 4.9 50 169-218 15-72 (444)
296 3r20_A Cytidylate kinase; stru 94.9 0.016 5.4E-07 47.8 3.2 23 196-218 9-31 (233)
297 3k1j_A LON protease, ATP-depen 94.9 0.018 6.1E-07 54.6 4.0 42 169-218 41-82 (604)
298 1ltq_A Polynucleotide kinase; 94.9 0.016 5.4E-07 49.7 3.3 22 197-218 3-24 (301)
299 2v3c_C SRP54, signal recogniti 94.8 0.025 8.7E-07 51.2 4.8 26 195-220 98-123 (432)
300 3cmw_A Protein RECA, recombina 94.8 0.072 2.5E-06 55.9 8.6 85 194-285 1429-1519(1706)
301 3ld9_A DTMP kinase, thymidylat 94.8 0.084 2.9E-06 43.2 7.4 27 194-220 19-45 (223)
302 2wjg_A FEOB, ferrous iron tran 94.8 0.022 7.4E-07 44.8 3.7 24 195-218 6-29 (188)
303 3end_A Light-independent proto 94.8 0.04 1.4E-06 47.3 5.7 40 194-235 39-78 (307)
304 2fz4_A DNA repair protein RAD2 94.8 0.1 3.5E-06 43.0 8.0 91 199-300 111-217 (237)
305 3crm_A TRNA delta(2)-isopenten 94.8 0.017 5.9E-07 50.0 3.3 22 197-218 6-27 (323)
306 2dyk_A GTP-binding protein; GT 94.8 0.019 6.6E-07 43.6 3.3 23 197-219 2-24 (161)
307 2qe7_A ATP synthase subunit al 94.7 0.097 3.3E-06 47.8 8.3 85 196-284 162-263 (502)
308 3exa_A TRNA delta(2)-isopenten 94.7 0.019 6.4E-07 49.5 3.4 23 196-218 3-25 (322)
309 3sop_A Neuronal-specific septi 94.7 0.017 5.8E-07 48.9 3.1 22 198-219 4-25 (270)
310 1xx6_A Thymidine kinase; NESG, 94.7 0.016 5.6E-07 46.2 2.8 25 196-220 8-32 (191)
311 4edh_A DTMP kinase, thymidylat 94.7 0.084 2.9E-06 42.8 7.1 24 196-219 6-29 (213)
312 2v9p_A Replication protein E1; 94.6 0.018 6.3E-07 49.5 3.1 24 195-218 125-148 (305)
313 2pjz_A Hypothetical protein ST 94.6 0.02 6.7E-07 48.3 3.2 22 197-218 31-52 (263)
314 3foz_A TRNA delta(2)-isopenten 94.6 0.024 8.4E-07 48.7 3.7 24 195-218 9-32 (316)
315 1u0j_A DNA replication protein 94.6 0.038 1.3E-06 46.4 4.8 36 179-218 91-126 (267)
316 2ce2_X GTPase HRAS; signaling 94.6 0.018 6.3E-07 43.8 2.7 22 198-219 5-26 (166)
317 1nij_A Hypothetical protein YJ 94.5 0.022 7.4E-07 49.4 3.4 24 195-218 3-26 (318)
318 3l0o_A Transcription terminati 94.5 0.17 6E-06 44.8 9.0 53 179-237 163-216 (427)
319 2ck3_A ATP synthase subunit al 94.5 0.14 4.8E-06 46.9 8.7 90 196-285 162-272 (510)
320 2nzj_A GTP-binding protein REM 94.5 0.03 1E-06 43.1 3.9 24 196-219 4-27 (175)
321 1a7j_A Phosphoribulokinase; tr 94.5 0.011 3.9E-07 50.5 1.4 24 195-218 4-27 (290)
322 1z2a_A RAS-related protein RAB 94.4 0.028 9.6E-07 43.0 3.6 24 196-219 5-28 (168)
323 1q3t_A Cytidylate kinase; nucl 94.4 0.023 8E-07 46.8 3.2 25 194-218 14-38 (236)
324 1svm_A Large T antigen; AAA+ f 94.4 0.037 1.3E-06 49.2 4.6 25 194-218 167-191 (377)
325 2qm8_A GTPase/ATPase; G protei 94.4 0.045 1.6E-06 47.8 5.1 25 194-218 53-77 (337)
326 3q72_A GTP-binding protein RAD 94.3 0.022 7.4E-07 43.6 2.7 21 198-218 4-24 (166)
327 2erx_A GTP-binding protein DI- 94.3 0.024 8.2E-07 43.5 3.0 22 197-218 4-25 (172)
328 3q85_A GTP-binding protein REM 94.3 0.025 8.5E-07 43.4 3.0 22 197-218 3-24 (169)
329 3con_A GTPase NRAS; structural 94.3 0.023 7.8E-07 44.7 2.8 23 197-219 22-44 (190)
330 2bbs_A Cystic fibrosis transme 94.3 0.024 8.2E-07 48.5 3.1 23 196-218 64-86 (290)
331 2lkc_A Translation initiation 94.3 0.03 1E-06 43.4 3.4 25 194-218 6-30 (178)
332 1fzq_A ADP-ribosylation factor 94.3 0.032 1.1E-06 43.7 3.6 25 195-219 15-39 (181)
333 2www_A Methylmalonic aciduria 94.3 0.03 1E-06 49.2 3.7 24 195-218 73-96 (349)
334 1c1y_A RAS-related protein RAP 94.2 0.025 8.4E-07 43.3 2.8 23 197-219 4-26 (167)
335 1p5z_B DCK, deoxycytidine kina 94.2 0.022 7.6E-07 47.8 2.8 24 195-218 23-46 (263)
336 2ocp_A DGK, deoxyguanosine kin 94.2 0.028 9.7E-07 46.4 3.3 24 196-219 2-25 (241)
337 1tq4_A IIGP1, interferon-induc 94.2 0.028 9.4E-07 50.6 3.4 24 195-218 68-91 (413)
338 1kao_A RAP2A; GTP-binding prot 94.2 0.025 8.6E-07 43.1 2.8 23 197-219 4-26 (167)
339 2gj8_A MNME, tRNA modification 94.2 0.031 1.1E-06 43.4 3.4 23 197-219 5-27 (172)
340 2hxs_A RAB-26, RAS-related pro 94.2 0.049 1.7E-06 42.1 4.5 25 195-219 5-29 (178)
341 1pui_A ENGB, probable GTP-bind 94.2 0.021 7.4E-07 45.7 2.4 25 195-219 25-49 (210)
342 3vkw_A Replicase large subunit 94.2 0.086 3E-06 47.6 6.5 26 193-218 158-183 (446)
343 3nh6_A ATP-binding cassette SU 94.2 0.019 6.4E-07 49.5 2.1 23 196-218 80-102 (306)
344 1z08_A RAS-related protein RAB 94.1 0.026 8.9E-07 43.3 2.8 24 196-219 6-29 (170)
345 3v9p_A DTMP kinase, thymidylat 94.1 0.087 3E-06 43.2 6.1 25 196-220 25-49 (227)
346 1r8s_A ADP-ribosylation factor 94.1 0.028 9.5E-07 42.9 2.9 21 199-219 3-23 (164)
347 3fvq_A Fe(3+) IONS import ATP- 94.1 0.027 9.3E-07 49.6 3.1 23 196-218 30-52 (359)
348 1ek0_A Protein (GTP-binding pr 94.1 0.027 9.3E-07 43.1 2.8 22 198-219 5-26 (170)
349 1z0j_A RAB-22, RAS-related pro 94.1 0.027 9.3E-07 43.1 2.8 24 196-219 6-29 (170)
350 1u8z_A RAS-related protein RAL 94.1 0.042 1.4E-06 41.9 3.9 24 196-219 4-27 (168)
351 3tui_C Methionine import ATP-b 94.1 0.029 9.9E-07 49.5 3.2 23 196-218 54-76 (366)
352 1m7b_A RND3/RHOE small GTP-bin 94.1 0.027 9.1E-07 44.2 2.7 25 195-219 6-30 (184)
353 2xau_A PRE-mRNA-splicing facto 94.0 0.37 1.3E-05 47.0 11.2 90 197-286 110-219 (773)
354 2p67_A LAO/AO transport system 94.0 0.098 3.3E-06 45.7 6.6 25 194-218 54-78 (341)
355 3cbq_A GTP-binding protein REM 94.0 0.027 9.3E-07 44.8 2.8 23 195-217 22-44 (195)
356 3ihw_A Centg3; RAS, centaurin, 94.0 0.028 9.6E-07 44.2 2.8 24 196-219 20-43 (184)
357 1cp2_A CP2, nitrogenase iron p 94.0 0.062 2.1E-06 45.0 5.1 37 197-235 2-38 (269)
358 1svi_A GTP-binding protein YSX 94.0 0.033 1.1E-06 43.9 3.3 25 195-219 22-46 (195)
359 3kta_A Chromosome segregation 94.0 0.032 1.1E-06 43.8 3.1 21 198-218 28-48 (182)
360 2fn4_A P23, RAS-related protei 94.0 0.04 1.4E-06 42.7 3.7 26 194-219 7-32 (181)
361 3tw8_B RAS-related protein RAB 94.0 0.028 9.7E-07 43.6 2.8 26 194-219 7-32 (181)
362 1nrj_B SR-beta, signal recogni 94.0 0.031 1.1E-06 45.1 3.1 26 194-219 10-35 (218)
363 2cxx_A Probable GTP-binding pr 94.0 0.029 9.9E-07 44.0 2.9 22 198-219 3-24 (190)
364 1wms_A RAB-9, RAB9, RAS-relate 94.0 0.029 1E-06 43.4 2.8 24 195-218 6-29 (177)
365 1z47_A CYSA, putative ABC-tran 94.0 0.031 1.1E-06 49.2 3.2 22 197-218 42-63 (355)
366 1w36_D RECD, exodeoxyribonucle 94.0 0.1 3.6E-06 49.4 7.1 47 197-243 165-212 (608)
367 1r2q_A RAS-related protein RAB 93.9 0.03 1E-06 42.8 2.8 23 196-218 6-28 (170)
368 1g16_A RAS-related protein SEC 93.9 0.03 1E-06 42.9 2.7 22 197-218 4-25 (170)
369 4dzz_A Plasmid partitioning pr 93.9 0.091 3.1E-06 41.8 5.8 43 197-241 2-45 (206)
370 3t1o_A Gliding protein MGLA; G 93.9 0.03 1E-06 44.1 2.8 23 196-218 14-36 (198)
371 2oil_A CATX-8, RAS-related pro 93.9 0.042 1.4E-06 43.3 3.7 25 195-219 24-48 (193)
372 3pqc_A Probable GTP-binding pr 93.9 0.035 1.2E-06 43.7 3.2 25 195-219 22-46 (195)
373 1ky3_A GTP-binding protein YPT 93.9 0.041 1.4E-06 42.6 3.6 25 195-219 7-31 (182)
374 2qmh_A HPR kinase/phosphorylas 93.9 0.037 1.3E-06 44.3 3.2 22 197-218 35-56 (205)
375 3c5c_A RAS-like protein 12; GD 93.9 0.032 1.1E-06 44.0 2.8 25 195-219 20-44 (187)
376 4tmk_A Protein (thymidylate ki 93.8 0.13 4.5E-06 41.7 6.5 52 197-249 4-55 (213)
377 1z0f_A RAB14, member RAS oncog 93.8 0.032 1.1E-06 43.1 2.8 25 195-219 14-38 (179)
378 2aka_B Dynamin-1; fusion prote 93.8 0.071 2.4E-06 45.3 5.2 42 178-219 8-49 (299)
379 1f6b_A SAR1; gtpases, N-termin 93.8 0.039 1.3E-06 43.9 3.4 23 197-219 26-48 (198)
380 2afh_E Nitrogenase iron protei 93.8 0.073 2.5E-06 45.2 5.2 38 196-235 2-39 (289)
381 3lv8_A DTMP kinase, thymidylat 93.8 0.13 4.5E-06 42.4 6.6 37 196-233 27-63 (236)
382 1ny5_A Transcriptional regulat 93.8 0.11 3.7E-06 46.3 6.5 60 171-236 139-198 (387)
383 3rlf_A Maltose/maltodextrin im 93.8 0.034 1.2E-06 49.3 3.2 23 196-218 29-51 (381)
384 2yyz_A Sugar ABC transporter, 93.8 0.034 1.2E-06 49.0 3.2 23 196-218 29-51 (359)
385 1m2o_B GTP-binding protein SAR 93.8 0.032 1.1E-06 44.1 2.7 22 197-218 24-45 (190)
386 4dsu_A GTPase KRAS, isoform 2B 93.8 0.033 1.1E-06 43.5 2.8 24 196-219 4-27 (189)
387 2it1_A 362AA long hypothetical 93.8 0.035 1.2E-06 49.0 3.2 23 196-218 29-51 (362)
388 2cjw_A GTP-binding protein GEM 93.8 0.035 1.2E-06 44.0 2.9 23 196-218 6-28 (192)
389 3vr4_D V-type sodium ATPase su 93.8 0.11 3.8E-06 47.0 6.4 85 198-284 153-257 (465)
390 3gqb_B V-type ATP synthase bet 93.7 0.065 2.2E-06 48.5 4.9 88 197-284 148-260 (464)
391 1g29_1 MALK, maltose transport 93.7 0.036 1.2E-06 49.1 3.2 22 197-218 30-51 (372)
392 1upt_A ARL1, ADP-ribosylation 93.7 0.047 1.6E-06 41.8 3.6 24 195-218 6-29 (171)
393 1ega_A Protein (GTP-binding pr 93.7 0.044 1.5E-06 47.1 3.6 25 195-219 7-31 (301)
394 4bas_A ADP-ribosylation factor 93.7 0.046 1.6E-06 43.2 3.6 26 194-219 15-40 (199)
395 3bc1_A RAS-related protein RAB 93.7 0.035 1.2E-06 43.5 2.8 24 195-218 10-33 (195)
396 2c61_A A-type ATP synthase non 93.7 0.078 2.7E-06 48.2 5.3 88 197-284 153-258 (469)
397 2iwr_A Centaurin gamma 1; ANK 93.7 0.027 9.2E-07 43.7 2.1 24 196-219 7-30 (178)
398 3kkq_A RAS-related protein M-R 93.7 0.038 1.3E-06 43.1 2.9 25 195-219 17-41 (183)
399 2y8e_A RAB-protein 6, GH09086P 93.7 0.034 1.2E-06 43.0 2.6 22 197-218 15-36 (179)
400 1mh1_A RAC1; GTP-binding, GTPa 93.7 0.035 1.2E-06 43.3 2.7 23 196-218 5-27 (186)
401 1v43_A Sugar-binding transport 93.6 0.038 1.3E-06 48.9 3.2 23 196-218 37-59 (372)
402 2yv5_A YJEQ protein; hydrolase 93.6 0.058 2E-06 46.3 4.3 32 177-217 155-186 (302)
403 2qnr_A Septin-2, protein NEDD5 93.6 0.032 1.1E-06 48.0 2.6 22 196-218 19-40 (301)
404 2bme_A RAB4A, RAS-related prot 93.6 0.036 1.2E-06 43.3 2.7 25 195-219 9-33 (186)
405 1lw7_A Transcriptional regulat 93.6 0.035 1.2E-06 49.0 2.9 23 196-218 170-192 (365)
406 3eph_A TRNA isopentenyltransfe 93.6 0.04 1.4E-06 49.2 3.2 22 197-218 3-24 (409)
407 3thx_A DNA mismatch repair pro 93.6 0.11 3.8E-06 51.5 6.7 22 195-216 661-682 (934)
408 3oaa_A ATP synthase subunit al 93.6 0.24 8.3E-06 45.2 8.4 85 197-285 163-264 (513)
409 3iev_A GTP-binding protein ERA 93.6 0.047 1.6E-06 47.0 3.6 27 193-219 7-33 (308)
410 2axn_A 6-phosphofructo-2-kinas 93.6 0.043 1.5E-06 51.0 3.6 25 195-219 34-58 (520)
411 1fx0_A ATP synthase alpha chai 93.6 0.086 2.9E-06 48.3 5.4 86 196-285 163-265 (507)
412 2orv_A Thymidine kinase; TP4A 93.6 0.2 6.9E-06 41.0 7.2 104 196-314 19-125 (234)
413 2a9k_A RAS-related protein RAL 93.6 0.038 1.3E-06 43.0 2.8 24 196-219 18-41 (187)
414 2ew1_A RAS-related protein RAB 93.6 0.048 1.7E-06 43.6 3.5 23 196-218 26-48 (201)
415 2qu8_A Putative nucleolar GTP- 93.6 0.053 1.8E-06 44.2 3.8 25 195-219 28-52 (228)
416 3bwd_D RAC-like GTP-binding pr 93.5 0.039 1.3E-06 42.9 2.8 23 196-218 8-30 (182)
417 1moz_A ARL1, ADP-ribosylation 93.5 0.046 1.6E-06 42.5 3.3 24 195-218 17-40 (183)
418 2efe_B Small GTP-binding prote 93.5 0.039 1.3E-06 42.8 2.8 25 195-219 11-35 (181)
419 3dz8_A RAS-related protein RAB 93.5 0.039 1.3E-06 43.5 2.8 24 196-219 23-46 (191)
420 2atv_A RERG, RAS-like estrogen 93.5 0.039 1.3E-06 43.7 2.8 24 196-219 28-51 (196)
421 2bov_A RAla, RAS-related prote 93.5 0.056 1.9E-06 42.9 3.8 25 195-219 13-37 (206)
422 3llu_A RAS-related GTP-binding 93.5 0.04 1.4E-06 43.7 2.9 23 196-218 20-42 (196)
423 2g6b_A RAS-related protein RAB 93.5 0.04 1.4E-06 42.7 2.8 25 195-219 9-33 (180)
424 3t5g_A GTP-binding protein RHE 93.5 0.041 1.4E-06 42.8 2.9 24 195-218 5-28 (181)
425 1zbd_A Rabphilin-3A; G protein 93.5 0.042 1.4E-06 43.7 3.0 25 195-219 7-31 (203)
426 3clv_A RAB5 protein, putative; 93.5 0.04 1.4E-06 43.5 2.8 24 196-219 7-30 (208)
427 1vg8_A RAS-related protein RAB 93.5 0.04 1.4E-06 43.9 2.8 25 195-219 7-31 (207)
428 2q3h_A RAS homolog gene family 93.4 0.044 1.5E-06 43.5 3.0 24 196-219 20-43 (201)
429 3oes_A GTPase rhebl1; small GT 93.4 0.04 1.4E-06 43.9 2.7 25 195-219 23-47 (201)
430 2h57_A ADP-ribosylation factor 93.4 0.042 1.4E-06 43.2 2.9 25 196-220 21-45 (190)
431 3fkq_A NTRC-like two-domain pr 93.4 0.11 3.9E-06 45.9 5.9 41 193-235 140-181 (373)
432 1zd9_A ADP-ribosylation factor 93.4 0.043 1.5E-06 43.2 2.8 24 196-219 22-45 (188)
433 1gwn_A RHO-related GTP-binding 93.4 0.041 1.4E-06 44.2 2.7 24 196-219 28-51 (205)
434 2il1_A RAB12; G-protein, GDP, 93.3 0.043 1.5E-06 43.3 2.8 24 196-219 26-49 (192)
435 2fg5_A RAB-22B, RAS-related pr 93.3 0.042 1.4E-06 43.4 2.7 24 196-219 23-46 (192)
436 3d31_A Sulfate/molybdate ABC t 93.3 0.031 1.1E-06 49.0 2.1 23 196-218 26-48 (348)
437 1h65_A Chloroplast outer envel 93.3 0.096 3.3E-06 44.0 5.1 25 195-219 38-62 (270)
438 2o52_A RAS-related protein RAB 93.3 0.058 2E-06 42.9 3.6 25 195-219 24-48 (200)
439 3reg_A RHO-like small GTPase; 93.3 0.044 1.5E-06 43.3 2.8 25 195-219 22-46 (194)
440 2gf0_A GTP-binding protein DI- 93.3 0.043 1.5E-06 43.4 2.7 23 196-218 8-30 (199)
441 2gf9_A RAS-related protein RAB 93.3 0.045 1.6E-06 43.0 2.8 24 196-219 22-45 (189)
442 2fh5_B SR-beta, signal recogni 93.3 0.045 1.5E-06 44.0 2.8 24 196-219 7-30 (214)
443 3vr4_A V-type sodium ATPase ca 93.3 0.32 1.1E-05 45.2 8.6 49 181-238 222-270 (600)
444 3lxx_A GTPase IMAP family memb 93.2 0.062 2.1E-06 44.2 3.7 25 195-219 28-52 (239)
445 3mfy_A V-type ATP synthase alp 93.2 0.23 8E-06 45.9 7.7 47 196-246 227-274 (588)
446 2h92_A Cytidylate kinase; ross 93.2 0.04 1.4E-06 44.6 2.5 22 197-218 4-25 (219)
447 2g3y_A GTP-binding protein GEM 93.2 0.048 1.6E-06 44.2 2.9 23 196-218 37-59 (211)
448 3k53_A Ferrous iron transport 93.2 0.056 1.9E-06 45.5 3.5 24 196-219 3-26 (271)
449 4akg_A Glutathione S-transfera 93.2 0.16 5.5E-06 55.8 7.7 77 199-292 1270-1353(2695)
450 1ksh_A ARF-like protein 2; sma 93.2 0.062 2.1E-06 42.0 3.6 25 196-220 18-42 (186)
451 1z06_A RAS-related protein RAB 93.2 0.047 1.6E-06 42.9 2.8 24 195-218 19-42 (189)
452 3tkl_A RAS-related protein RAB 93.2 0.047 1.6E-06 43.0 2.8 25 195-219 15-39 (196)
453 2obl_A ESCN; ATPase, hydrolase 93.1 0.047 1.6E-06 47.9 3.0 24 196-219 71-94 (347)
454 3gd7_A Fusion complex of cysti 93.1 0.049 1.7E-06 48.5 3.1 23 196-218 47-69 (390)
455 2j1l_A RHO-related GTP-binding 93.1 0.049 1.7E-06 43.9 2.9 25 195-219 33-57 (214)
456 2b6h_A ADP-ribosylation factor 93.1 0.066 2.3E-06 42.3 3.6 23 196-218 29-51 (192)
457 2gza_A Type IV secretion syste 93.1 0.04 1.4E-06 48.6 2.5 22 197-218 176-197 (361)
458 3ch4_B Pmkase, phosphomevalona 93.1 0.069 2.4E-06 42.8 3.6 25 194-218 9-33 (202)
459 2h17_A ADP-ribosylation factor 93.1 0.047 1.6E-06 42.6 2.7 24 196-219 21-44 (181)
460 3gmt_A Adenylate kinase; ssgci 93.1 0.049 1.7E-06 44.7 2.8 24 195-218 7-30 (230)
461 4b3f_X DNA-binding protein smu 93.1 0.21 7.3E-06 47.6 7.7 63 176-249 193-255 (646)
462 2a5j_A RAS-related protein RAB 93.1 0.081 2.8E-06 41.6 4.1 24 196-219 21-44 (191)
463 3def_A T7I23.11 protein; chlor 93.1 0.11 3.8E-06 43.5 5.1 25 195-219 35-59 (262)
464 2pt7_A CAG-ALFA; ATPase, prote 93.1 0.044 1.5E-06 47.7 2.7 80 197-286 172-251 (330)
465 1zj6_A ADP-ribosylation factor 93.1 0.073 2.5E-06 41.7 3.8 24 195-218 15-38 (187)
466 2p5s_A RAS and EF-hand domain 93.1 0.05 1.7E-06 43.2 2.8 24 195-218 27-50 (199)
467 1x3s_A RAS-related protein RAB 93.1 0.051 1.7E-06 42.7 2.8 24 196-219 15-38 (195)
468 3cwq_A Para family chromosome 93.0 0.16 5.5E-06 40.9 5.9 42 198-242 2-44 (209)
469 3f9v_A Minichromosome maintena 93.0 0.041 1.4E-06 52.0 2.6 21 198-218 329-349 (595)
470 2bcg_Y Protein YP2, GTP-bindin 93.0 0.049 1.7E-06 43.5 2.7 25 195-219 7-31 (206)
471 1bif_A 6-phosphofructo-2-kinas 93.0 0.056 1.9E-06 49.5 3.4 24 196-219 39-62 (469)
472 2qag_B Septin-6, protein NEDD5 93.0 0.049 1.7E-06 49.0 2.9 20 199-218 45-64 (427)
473 1oxx_K GLCV, glucose, ABC tran 93.0 0.029 9.9E-07 49.4 1.4 23 196-218 31-53 (353)
474 4dkx_A RAS-related protein RAB 93.0 0.05 1.7E-06 44.3 2.7 21 198-218 15-35 (216)
475 2rcn_A Probable GTPase ENGC; Y 93.0 0.056 1.9E-06 47.5 3.2 22 197-218 216-237 (358)
476 1p9r_A General secretion pathw 93.0 0.1 3.6E-06 46.9 5.0 23 196-218 167-189 (418)
477 1g8f_A Sulfate adenylyltransfe 92.9 0.089 3E-06 48.6 4.5 26 194-219 393-418 (511)
478 1m8p_A Sulfate adenylyltransfe 92.9 0.11 3.9E-06 48.7 5.3 25 194-218 394-418 (573)
479 2fv8_A H6, RHO-related GTP-bin 92.9 0.054 1.8E-06 43.4 2.7 24 196-219 25-48 (207)
480 4gzl_A RAS-related C3 botulinu 92.9 0.052 1.8E-06 43.4 2.6 23 196-218 30-52 (204)
481 2fu5_C RAS-related protein RAB 92.8 0.035 1.2E-06 43.3 1.5 25 195-219 7-31 (183)
482 1mky_A Probable GTP-binding pr 92.8 0.13 4.4E-06 46.6 5.5 47 173-219 152-203 (439)
483 3io3_A DEHA2D07832P; chaperone 92.8 0.18 6.1E-06 44.2 6.1 25 194-218 16-40 (348)
484 2atx_A Small GTP binding prote 92.8 0.057 2E-06 42.5 2.7 24 196-219 18-41 (194)
485 1f2t_A RAD50 ABC-ATPase; DNA d 92.8 0.08 2.7E-06 40.3 3.4 21 197-217 24-44 (149)
486 3cph_A RAS-related protein SEC 92.7 0.06 2E-06 43.1 2.8 23 196-218 20-42 (213)
487 1jwy_B Dynamin A GTPase domain 92.7 0.12 4.2E-06 44.3 5.0 25 194-218 22-46 (315)
488 2f7s_A C25KG, RAS-related prot 92.7 0.064 2.2E-06 43.1 3.0 24 196-219 25-48 (217)
489 3iqw_A Tail-anchored protein t 92.7 0.2 6.7E-06 43.7 6.2 24 195-218 15-38 (334)
490 3q3j_B RHO-related GTP-binding 92.7 0.061 2.1E-06 43.4 2.8 24 196-219 27-50 (214)
491 2xtp_A GTPase IMAP family memb 92.7 0.075 2.6E-06 44.3 3.5 25 195-219 21-45 (260)
492 2hup_A RAS-related protein RAB 92.7 0.077 2.6E-06 42.3 3.4 24 195-218 28-51 (201)
493 2j0v_A RAC-like GTP-binding pr 92.6 0.06 2.1E-06 43.2 2.7 25 195-219 8-32 (212)
494 2gco_A H9, RHO-related GTP-bin 92.6 0.061 2.1E-06 42.8 2.7 24 196-219 25-48 (201)
495 4f4c_A Multidrug resistance pr 92.6 0.55 1.9E-05 48.7 10.4 24 195-218 443-466 (1321)
496 1c9k_A COBU, adenosylcobinamid 92.6 0.11 3.9E-06 40.8 4.1 36 199-240 2-37 (180)
497 3dzd_A Transcriptional regulat 92.6 0.043 1.5E-06 48.6 1.9 46 170-219 130-175 (368)
498 3fdi_A Uncharacterized protein 92.6 0.068 2.3E-06 42.9 3.0 22 197-218 7-28 (201)
499 4hlc_A DTMP kinase, thymidylat 92.6 0.23 7.9E-06 39.9 6.1 23 197-219 3-25 (205)
500 1wf3_A GTP-binding protein; GT 92.6 0.074 2.5E-06 45.6 3.3 25 195-219 6-30 (301)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.91 E-value=1.7e-24 Score=204.67 Aligned_cols=132 Identities=22% Similarity=0.240 Sum_probs=108.7
Q ss_pred ccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc--hHhhhhcCceeEEEEcCccc--cHHHHHHHH
Q 048765 172 CGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN--HEEVIRKFDKILWVCVSETF--EEFRVAKAM 247 (314)
Q Consensus 172 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~~~~~i 247 (314)
+||+.++++|.++|..... ...++|+|+||||+||||||+++|+ +.++..+|++++||++++.+ ++..++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 5999999999999975421 4589999999999999999999998 57889999999999999875 899999999
Q ss_pred HHHhcCCCC-------CCCcHHHHHHHHHHHccCc-eEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 248 VEALDGHES-------HLGEFQSLLRHIYESIAGK-SFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 248 ~~~~~~~~~-------~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
+.+++.... ...+...+...+++.|.++ ||||||||||+.++ + .++. .+||+||||||+
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~--~-----~~~~-~~gs~ilvTTR~ 274 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET--I-----RWAQ-ELRLRCLVTTRD 274 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH--H-----HHHH-HTTCEEEEEESB
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh--h-----cccc-cCCCEEEEEcCC
Confidence 999976421 1224566789999999996 99999999998532 2 2221 269999999995
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.83 E-value=8.7e-21 Score=185.09 Aligned_cols=130 Identities=25% Similarity=0.259 Sum_probs=102.7
Q ss_pred cccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCce-eEEEEcCccccHHHHHHHHHH
Q 048765 171 ICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDK-ILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 171 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~ 249 (314)
.+||+.+++.|.++|.... ..++|+|+||||+||||||+.+|++.++..+|+. ++|+++++.++...++..|++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4999999999999997532 3689999999999999999999998888999986 999999999998888888877
Q ss_pred HhcCCC------CC-----CCcHHHHHHHHHHHc---cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 250 ALDGHE------SH-----LGEFQSLLRHIYESI---AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 250 ~~~~~~------~~-----~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
.++... .. ..+.+.+...++..| .++|+||||||+|+. ..|+. ++ +||+||||||+
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~----f~---pGSRILVTTRd 274 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNA----FN---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHH----HH---SSCCEEEECSC
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHh----hC---CCeEEEEeccC
Confidence 543210 00 113345566777765 789999999999974 34544 33 69999999996
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=6.3e-20 Score=188.65 Aligned_cols=136 Identities=24% Similarity=0.254 Sum_probs=105.6
Q ss_pred ccccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhh-hhcC-ceeEEEEcCcccc--HH
Q 048765 166 IDEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEV-IRKF-DKILWVCVSETFE--EF 241 (314)
Q Consensus 166 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~ 241 (314)
...+.|+||+.++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 344679999999999999997543 45789999999999999999999997654 4555 7888999988543 44
Q ss_pred HHHHHHHHHhcCCC----CCCCcHHHHHHHHHHHccCc--eEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 242 RVAKAMVEALDGHE----SHLGEFQSLLRHIYESIAGK--SFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 242 ~~~~~i~~~~~~~~----~~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
..+..++..+.... ....+...+...++..|.++ ||||||||||+. ..|.. ..+||+||||||+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESS
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh-------hcCCCEEEEEcCC
Confidence 45677777776542 23356788889999999877 999999999975 22332 2579999999996
No 4
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.80 E-value=1.8e-20 Score=139.13 Aligned_cols=80 Identities=29% Similarity=0.535 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhh--ccCChHHHHHHHHHHHhhhhhhhhHH
Q 048765 4 AIVSPLLEQLISVSAEELTQQVKLVKGAEQEVEKLTSHLQTIQAVLSDAEQR--QVKEESVRVWLGRLKDVSYDIEDVLD 81 (314)
Q Consensus 4 ~~v~~~~~kl~~~l~~~l~~e~~~~~~v~~~~~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~eD~ld 81 (314)
|+++++++||++. +.+|+.++.||+++++.|+++|++|++||.+++.+ +..++.++.|+++||+++||+|||||
T Consensus 1 a~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD 76 (115)
T 3qfl_A 1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD 76 (115)
T ss_dssp CTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888887 78999999999999999999999999999999987 56799999999999999999999999
Q ss_pred HHHHHH
Q 048765 82 EWITAR 87 (314)
Q Consensus 82 ~~~~~~ 87 (314)
+|.++.
T Consensus 77 ~f~~~~ 82 (115)
T 3qfl_A 77 KFLVQV 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999654
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=165.56 Aligned_cols=133 Identities=24% Similarity=0.285 Sum_probs=99.4
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhh-hhcC-ceeEEEEcCccccHHHHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEV-IRKF-DKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~ 245 (314)
.+.||||+.+++.|.++|.... ...++++|+||||+||||||..++++.++ ..+| +.++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3569999999999999997543 45789999999999999999999997766 7889 58999998765 3333443
Q ss_pred HH---HHHhcCC----CCCCCcHHHHHHHHHHHccC--ceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 246 AM---VEALDGH----ESHLGEFQSLLRHIYESIAG--KSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 246 ~i---~~~~~~~----~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
.+ +..++.. .....+...+...+...+.+ +++||||||+|+. ..+. .+ .+||+||||||+
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----~~l~-~l---~~~~~ilvTsR~ 266 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----WVLK-AF---DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----HHHH-TT---CSSCEEEEEESC
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----HHHH-Hh---cCCCeEEEECCC
Confidence 33 3444421 12344567778888888865 7899999999863 2222 23 568999999995
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.40 E-value=1.2e-12 Score=118.92 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=84.4
Q ss_pred ccccccchhhHHHHHHHh-hccCcCCCCCeEEEEE--EccCCCChHHHHHHhhchHhhh---hcCc-eeEEEEcCccccH
Q 048765 168 EEEICGRVGEKNELLSKL-LCESSEQQKGLHIISI--VGMGGIGKTTLAQLACNHEEVI---RKFD-KILWVCVSETFEE 240 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~G~GKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~ 240 (314)
+..++||+.+++.|.++| .............+.| +|++|+|||+|++.+++..... ..|. .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999988 4321100012345556 9999999999999998743221 1122 4688888777788
Q ss_pred HHHHHHHHHHhcCCCCC-CCcHHHHHHHHHHHcc--CceEEEEEeccccC
Q 048765 241 FRVAKAMVEALDGHESH-LGEFQSLLRHIYESIA--GKSFLLVLDDVWDG 287 (314)
Q Consensus 241 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 287 (314)
..++..++.+++...+. ..+...+...+...|. +++++|||||+|..
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l 150 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSM 150 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHH
Confidence 89999999998654321 2234556666666664 78999999999874
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=1.3e-11 Score=111.08 Aligned_cols=143 Identities=15% Similarity=0.079 Sum_probs=97.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh----c--CceeEEEEcCccc-cHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR----K--FDKILWVCVSETF-EEF 241 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~--F~~~~wv~~~~~~-~~~ 241 (314)
..++||+.+++.+..++..... ....+.+.|+|++|+|||+||+.+++...-.. . ....+|++++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988764221 13356899999999999999999987432211 1 3467888887777 888
Q ss_pred HHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHccCceEEEEEeccccCCccC-HHhHHHhhccCCCCceEEEecc
Q 048765 242 RVAKAMVEALDGHES--HLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVK-WEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 242 ~~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~-~~~l~~~l~~~~~gs~iivTtR 313 (314)
.++..++..+.+... .......+...+...+..++.+|||||++...... .+.+...+.....+..||+||+
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~ 172 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEEC
Confidence 899999988843322 12234566777778887666699999997643222 2330333332225778888886
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.27 E-value=4.4e-11 Score=107.72 Aligned_cols=143 Identities=13% Similarity=0.039 Sum_probs=99.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhc-CceeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRK-FDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~~~~~i 247 (314)
+.++||+.+++.+..++........+..+.+.|+|++|+|||||++.++.. .... -...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 679999999999999886532111123348999999999999999999873 3332 1357788888888888999999
Q ss_pred HHHhcCCCCC-CCcHHHHHHHHHHHc--cCceEEEEEeccccCCccCHHhHHHhhccCC----CCceEEEecc
Q 048765 248 VEALDGHESH-LGEFQSLLRHIYESI--AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGL----HGSKILVTTR 313 (314)
Q Consensus 248 ~~~~~~~~~~-~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~iivTtR 313 (314)
+..++...+. ......+...+...+ .+++.+||||+++..+......|...+.... .+..||++|+
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~ 167 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGH 167 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEES
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEEC
Confidence 9988654322 224555666666665 3668999999998765444555555553211 3556777765
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.24 E-value=6.9e-11 Score=106.26 Aligned_cols=143 Identities=17% Similarity=0.145 Sum_probs=96.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh----hcCceeEEEEcCccccHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI----RKFDKILWVCVSETFEEFRVA 244 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~~~ 244 (314)
+.++||+.+++.+..++...-. ......+.|+|++|+|||+|++.+++...-. +.--..+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 6799999999999998854311 1345688999999999999999998743211 112356788988888889999
Q ss_pred HHHHHHhcCCCCC-CCcHHHHHHHHHHHc--cCceEEEEEeccccCCcc--CHHhHHHhhc--cC---CCCceEEEecc
Q 048765 245 KAMVEALDGHESH-LGEFQSLLRHIYESI--AGKSFLLVLDDVWDGNYV--KWEPFYHCLK--NG---LHGSKILVTTR 313 (314)
Q Consensus 245 ~~i~~~~~~~~~~-~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~--~~~~l~~~l~--~~---~~gs~iivTtR 313 (314)
..++..++...+. ......+...+...+ .+++.+||||+++..... ..+.+...+. .. ..+..+|.||+
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 9999998664332 223556666777666 456899999999764222 1233433332 11 33556777765
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.21 E-value=4.8e-11 Score=105.78 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=87.0
Q ss_pred ccccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc------c
Q 048765 166 IDEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF------E 239 (314)
Q Consensus 166 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~------~ 239 (314)
..+..++||+.+++.|.+++.. . +++.|+|++|+|||+|++.+++.. . .+|+++.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLEN------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHH------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhc------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCC
Confidence 3446799999999999998853 1 589999999999999999998632 2 7788875443 5
Q ss_pred HHHHHHHHHHHhcC-----------------C-CCCCCcHHHHHHHHHHHccC-ceEEEEEeccccCCc-------cCHH
Q 048765 240 EFRVAKAMVEALDG-----------------H-ESHLGEFQSLLRHIYESIAG-KSFLLVLDDVWDGNY-------VKWE 293 (314)
Q Consensus 240 ~~~~~~~i~~~~~~-----------------~-~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~-------~~~~ 293 (314)
...++..+.+.+.. . .....+...+...+.+.+.. ++.+|||||++..+. ..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 56666666665532 0 00123456666666665543 389999999976432 1122
Q ss_pred hHHHhhccCCCCceEEEecc
Q 048765 294 PFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 294 ~l~~~l~~~~~gs~iivTtR 313 (314)
.|...+.. .++.++|+|++
T Consensus 154 ~L~~~~~~-~~~~~~il~g~ 172 (350)
T 2qen_A 154 LFAYAYDS-LPNLKIILTGS 172 (350)
T ss_dssp HHHHHHHH-CTTEEEEEEES
T ss_pred HHHHHHHh-cCCeEEEEECC
Confidence 23333222 24677888875
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=8.7e-11 Score=105.48 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=94.0
Q ss_pred ccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcC---ceeEEEEcCccccHHHHH
Q 048765 168 EEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF---DKILWVCVSETFEEFRVA 244 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F---~~~~wv~~~~~~~~~~~~ 244 (314)
++.++||+.+++.+.+++..... ......+.|+|++|+|||||++.++.. ....+ ...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998864311 134568899999999999999999874 33332 357788887777778888
Q ss_pred HHHHHHhcCCCCC-CCcHHHHHHHHHHHcc--CceEEEEEeccccCC----ccCHHhHHHhhcc-CCCCceEEEecc
Q 048765 245 KAMVEALDGHESH-LGEFQSLLRHIYESIA--GKSFLLVLDDVWDGN----YVKWEPFYHCLKN-GLHGSKILVTTR 313 (314)
Q Consensus 245 ~~i~~~~~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~iivTtR 313 (314)
..++..++..... ..+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 8888877543221 2234555666666663 458999999997632 2233444444422 223445677765
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.14 E-value=4.8e-10 Score=99.52 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=81.8
Q ss_pred cccccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc-----ccHH
Q 048765 167 DEEEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET-----FEEF 241 (314)
Q Consensus 167 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~-----~~~~ 241 (314)
.+..++||+.+++.|.+ +.. +++.|+|++|+|||+|++.+++.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 44679999999999998 632 489999999999999999998742 22 2588887643 3444
Q ss_pred HHHHHHHHHhcC-------------C------CC----------CCCcHHHHHHHHHHHccCceEEEEEeccccCCc---
Q 048765 242 RVAKAMVEALDG-------------H------ES----------HLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNY--- 289 (314)
Q Consensus 242 ~~~~~i~~~~~~-------------~------~~----------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--- 289 (314)
.++..+.+.+.. . +. .......+...+.+.-. ++.+|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 455444443310 0 00 12344555555554323 489999999976321
Q ss_pred cCHHhHHHhhccCCCCceEEEeccC
Q 048765 290 VKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 290 ~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
..|..+...+.+..++.++|+|+++
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~ 179 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSE 179 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESS
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCc
Confidence 2333332333222246678888863
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.08 E-value=1.8e-09 Score=89.00 Aligned_cols=124 Identities=12% Similarity=0.010 Sum_probs=78.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|++..++.+.+++.... ...+.|+|++|+|||+|++.++........-...+.++.+.......+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 468999999999999986532 23489999999999999999987322111112344455554433333222211
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
....... .-.+++.+|||||++.......+.+...+.....+.++|+||+
T Consensus 91 ~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 91 EFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp HHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred HHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 1111000 0135789999999987654556667777766566778888875
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.02 E-value=2.1e-09 Score=89.76 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=75.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|++..++.+..++.... ....+.|+|++|+|||||++.+++.......+.. ..+....... .+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVCDNCR----EIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCSCSHHHH----HHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCcccHHHH----HHh
Confidence 469999999999999986532 2347889999999999999999874322111100 0000000000 000
Q ss_pred HHhcC-----CCCCCCcHHHHHHHHHHH-----ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EALDG-----HESHLGEFQSLLRHIYES-----IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~-----~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
..... .......... ...+.+. ..+++.+|||||++..+...++.+...+.....+..+|+||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp TTCCSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred ccCCcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 00000 0000011111 1122222 135679999999987655567778777766566778888875
No 15
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=3e-09 Score=92.67 Aligned_cols=126 Identities=8% Similarity=-0.048 Sum_probs=85.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhh------cCceeEEEEcCccccHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIR------KFDKILWVCVSETFEEFR 242 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~------~F~~~~wv~~~~~~~~~~ 242 (314)
..+.||+++++.|...|...-. +.....+.|+|++|+|||++++.++....... .| ..+++++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHH
Confidence 3489999999999988765322 24567889999999999999999998543211 12 467888888889999
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHc---cCceEEEEEeccccCCccCHHhHHHhh
Q 048765 243 VAKAMVEALDGHESHLGEFQSLLRHIYESI---AGKSFLLVLDDVWDGNYVKWEPFYHCL 299 (314)
Q Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~~~l~~~l 299 (314)
++..|++++.+..............+...+ .++.++|+||+++... .-+.|...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~ 154 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFE 154 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHH
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHH
Confidence 999999999664322222222333333333 4678999999997764 234455554
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=8.9e-09 Score=90.11 Aligned_cols=124 Identities=15% Similarity=0.122 Sum_probs=78.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
+.++|++..++.+..++.... ...+.++|++|+|||++|+.+++...-.......++++.+....... ++.++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV-VRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH-HHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH-HHHHH
Confidence 569999999999999986532 23388999999999999999987421111112345555554333222 22222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
..+.... ..+ .+++.+|||||++......++.|...+.....++.+|+||.
T Consensus 94 ~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 94 KHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp HHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEES
T ss_pred HHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeC
Confidence 2221000 012 45689999999987655556777777766666778888875
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.76 E-value=3.2e-08 Score=86.69 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=76.4
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcC-ceeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF-DKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 247 (314)
+.++|++..++.+..++.... ...+.++|++|+|||++|+.+++...- ..+ ...+.++.+.......+ ...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINVI-REK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHTT-HHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCchHHH-HHH
Confidence 458999999999998886532 334889999999999999999874211 111 12344554432221111 111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 248 VEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
+..+.... ....+++.+||+|+++......++.|...+.....++++|+||.
T Consensus 97 ~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 97 VKEFARTK--------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp HHHHHHSC--------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred HHHHHhhC--------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 11110000 01126788999999987655566778777776666778888875
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.76 E-value=7.3e-08 Score=77.30 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=38.0
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++||+.+++.+.+.+.... ...+.|+|++|+|||+||+.++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986532 356789999999999999999874
No 19
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.58 E-value=4e-07 Score=72.65 Aligned_cols=45 Identities=20% Similarity=0.249 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++|++.+++.+.+.+.... ...+.|+|++|+|||+||+.++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986532 346689999999999999999874
No 20
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.53 E-value=7.2e-08 Score=74.37 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=67.1
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
.++|+...+..+.+.+..-. ....-|.|+|.+|+|||++|+.+++... ..-...+ ++++.....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGR--NAQGEFV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSST--TTTSCCE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCC--ccCCCEE-EECCCCCcc---------
Confidence 47899999988888775432 1223468999999999999999976321 1111223 665543221
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 250 ALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
..... .+.. .+.-.|+||++..........|...+.......+||.||.
T Consensus 66 ---------~~~~~---~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~ 114 (145)
T 3n70_A 66 ---------PQLND---FIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGD 114 (145)
T ss_dssp ---------SCHHH---HHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEES
T ss_pred ---------hhhhc---HHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECC
Confidence 11111 1111 1235789999987654455667776654444557777764
No 21
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.50 E-value=4.6e-07 Score=72.37 Aligned_cols=119 Identities=16% Similarity=0.152 Sum_probs=64.2
Q ss_pred hhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC
Q 048765 175 VGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH 254 (314)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 254 (314)
....+.+.+++..-.. .....+.|+|++|+|||||++.++........+ .++++ +..++...+...+...
T Consensus 20 ~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~ 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEG 89 (180)
T ss_dssp HHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCc
Confidence 3444445544433221 234688999999999999999998843322222 23344 3445555554444322
Q ss_pred CCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHH--hHHHhhccC-CCCceEEEecc
Q 048765 255 ESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWE--PFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 255 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~iivTtR 313 (314)
.. . .....+ . +.-+|||||++......|. .+...+... ..|..||+||.
T Consensus 90 ~~--~---~~~~~~----~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 90 KD--T---KFLKTV----L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp CC--S---HHHHHH----H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hH--H---HHHHHh----c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 11 1 122222 2 4568999999743223343 344444322 24667888885
No 22
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.44 E-value=3.7e-07 Score=79.54 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=72.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcC-ceeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF-DKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 247 (314)
+.++|++..++.+.+++.... ...+.++|++|+|||++|+.++.... ...+ ...+.++.+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~------- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGI------- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCT-------
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccCh-------
Confidence 458999999999888876532 23388999999999999999987321 1111 12334454432111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHH--c-cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 248 VEALDGHESHLGEFQSLLRHIYES--I-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.........+... + .+++.++|||++........+.|...+.....+..+|+||.
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~ 140 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCN 140 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEES
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 1111111111111 1 35688999999987654445666666655556677777764
No 23
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.43 E-value=9.9e-07 Score=78.67 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=75.5
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|++..++.+...+.... ....+.|+|++|+||||+|+.++........+. ...+....+. ..+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~~~~----~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVCDNC----REIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSSHHH----HHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCcccHHH----HHHh
Confidence 459999999999999886532 234778999999999999999876332111110 0001110000 1111
Q ss_pred HHh-------cCC-CCCCCcHHHHHHHHHHH-ccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EAL-------DGH-ESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~-------~~~-~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
... ... .....+...+...+... ..+++.+|||||+...+....+.|...+.....+..+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 000 000 01122333333332211 145678999999987655567778777766555667777764
No 24
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.42 E-value=6.4e-07 Score=72.87 Aligned_cols=117 Identities=18% Similarity=0.190 Sum_probs=61.9
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES 256 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~ 256 (314)
.++.+.+++...... .....+.|+|++|+|||+||+.+++. .......++|++++ .+...+...+..
T Consensus 37 ~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 445555665443210 12267889999999999999999874 33334456666553 344444333221
Q ss_pred CCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHH--hHHH-hhccC-CCCceEEEecc
Q 048765 257 HLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWE--PFYH-CLKNG-LHGSKILVTTR 313 (314)
Q Consensus 257 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~--~l~~-~l~~~-~~gs~iivTtR 313 (314)
.........+.. .-+|||||++......|. .+.. .+... ..+.++|+||.
T Consensus 104 --~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn 157 (202)
T 2w58_A 104 --QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSN 157 (202)
T ss_dssp --CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEES
T ss_pred --chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 112222333321 239999999664323332 2332 33221 23557888875
No 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=2.4e-06 Score=75.55 Aligned_cols=133 Identities=13% Similarity=0.042 Sum_probs=76.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcC-ceeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF-DKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~~~~~i 247 (314)
..++|++..++.+..++.... ...+.++|++|+||||+|+.++........+ .....++.+.......+ ...
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-REK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-TTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-HHH
Confidence 568999999999999886532 2238899999999999999998743211112 12344555443333222 222
Q ss_pred HHHhcCC-CCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 248 VEALDGH-ESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 248 ~~~~~~~-~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
...+... ....... .....-.++.-+|+||++..........|...+.......++|++|.
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 2222110 0000000 00011124567999999977654455667777765555667777763
No 26
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.32 E-value=1.7e-06 Score=75.72 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=73.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
++++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. ... .++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~~~-~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-KID-FVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-CHH-HHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-CHH-HHHHHH
Confidence 568999999999999987432 3457788899999999999999763 22 23455565442 222 222222
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCC-ccCHHhHHHhhccCCCCceEEEecc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGN-YVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
..+.... .+.+++.+|+||++.... ....+.|...+.....+.++|+||.
T Consensus 94 ~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 94 TNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp HHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred HHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 2111000 013478899999997653 3345556666654344567877764
No 27
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.30 E-value=6.8e-07 Score=68.66 Aligned_cols=109 Identities=8% Similarity=0.061 Sum_probs=61.8
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
.++|+...+..+.+.+..-.. ...-|.|+|.+|+|||++|+.+++... ..+.++++... ....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~--~~~~----- 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYL--IDMP----- 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHH--HHCH-----
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCC--hHhh-----
Confidence 578888888888877654221 123477999999999999999987321 23333333211 1110
Q ss_pred HhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccC-CCCceEEEecc
Q 048765 250 ALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG-LHGSKILVTTR 313 (314)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~iivTtR 313 (314)
..+.+. .+.-.|+||++..........+...+... ....+||.||.
T Consensus 68 ----------------~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 68 ----------------MELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp ----------------HHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred ----------------hhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 111111 12347899999776544445566655533 33467777763
No 28
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.26 E-value=8.7e-06 Score=74.43 Aligned_cols=102 Identities=20% Similarity=0.275 Sum_probs=60.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcC--ceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKF--DKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F--~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
...+.|+|++|+||||||+.+++ .....| ..++++++. .+...+...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 56789999999999999999987 333333 234555443 3344444444321 11 22333334
Q ss_pred CceEEEEEeccccCCc--cCHHhHHHhhcc-CCCCceEEEeccC
Q 048765 274 GKSFLLVLDDVWDGNY--VKWEPFYHCLKN-GLHGSKILVTTRK 314 (314)
Q Consensus 274 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR~ 314 (314)
.+.-+|+|||++.... ...+.+...+.. ...|..||+||.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3677999999976532 123345555432 2457788888863
No 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.25 E-value=7.5e-06 Score=71.03 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=66.7
Q ss_pred ccccchhhHHHHHHHhhccCc---------CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCc--eeEEEEcCccc
Q 048765 170 EICGRVGEKNELLSKLLCESS---------EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFD--KILWVCVSETF 238 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~---------~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~ 238 (314)
.++|.+..++.|.+.+..... ........+.|+|++|+|||+||+.+++......... ..+.++.+.-.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 488888887777765432100 0013455789999999999999998877432222221 23333322110
Q ss_pred cHHHHHHHHHHHhcCCCCCCCcH-HHHHHHHHHHccCceEEEEEeccccC---------CccCHHhHHHhhccCCCCceE
Q 048765 239 EEFRVAKAMVEALDGHESHLGEF-QSLLRHIYESIAGKSFLLVLDDVWDG---------NYVKWEPFYHCLKNGLHGSKI 308 (314)
Q Consensus 239 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~l~~~L~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~i 308 (314)
. ...... ..+...+... +..+|+||++... .......|...+.....+..|
T Consensus 112 --------------~--~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~ 172 (309)
T 3syl_A 112 --------------G--QYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVV 172 (309)
T ss_dssp --------------C--SSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEE
T ss_pred --------------h--hcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEE
Confidence 0 001111 1111222221 3459999999743 223345566666655556677
Q ss_pred EEec
Q 048765 309 LVTT 312 (314)
Q Consensus 309 ivTt 312 (314)
|+||
T Consensus 173 i~~~ 176 (309)
T 3syl_A 173 ILAG 176 (309)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 7776
No 30
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.25 E-value=2.4e-06 Score=73.37 Aligned_cols=51 Identities=24% Similarity=0.182 Sum_probs=37.5
Q ss_pred ccccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 168 EEEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 168 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-+.++|.+..++.|.+.+...-.. .......+.|+|++|+|||+||+.+++
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 356999999999888877432000 002345688999999999999999987
No 31
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.24 E-value=1e-06 Score=73.40 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=61.9
Q ss_pred cccccc---hhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGR---VGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
+.++|. ...++.+..++.. .....+.|+|++|+|||+||+.++.. .......+.|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~------~~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG------DGVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT------CSCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhC------CCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 346653 2444555555433 13467889999999999999999873 3333445677776542211
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccC--HHhHHHhhccC-CCCc-eEEEecc
Q 048765 246 AMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVK--WEPFYHCLKNG-LHGS-KILVTTR 313 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs-~iivTtR 313 (314)
+...+ ..+ .+..+|||||++...... .+.+...+... ..+. ++|+||+
T Consensus 95 -~~~~~------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~ 146 (242)
T 3bos_A 95 -STALL------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSAS 146 (242)
T ss_dssp -CGGGG------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred -HHHHH------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 00000 011 346799999997654322 33454444321 1222 4777765
No 32
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.18 E-value=7.9e-06 Score=71.51 Aligned_cols=101 Identities=27% Similarity=0.280 Sum_probs=55.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (314)
....+.|+|++|+||||||+.+++... ..-...+++++. .+...+...+... .... +...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~--~~~~~~~~i~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~- 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK--KRGYRVIYSSAD------DFAQAMVEHLKKG-----TINE----FRNMYK- 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH--HTTCCEEEEEHH------HHHHHHHHHHHHT-----CHHH----HHHHHH-
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHhc-
Confidence 356788999999999999999987432 212234555443 3333333333211 1111 222222
Q ss_pred ceEEEEEeccccCCc--cCHHhHHHhhcc-CCCCceEEEecc
Q 048765 275 KSFLLVLDDVWDGNY--VKWEPFYHCLKN-GLHGSKILVTTR 313 (314)
Q Consensus 275 kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~iivTtR 313 (314)
+..+|+|||+..... .....+...+.. ...|..||+||.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 367999999976432 112334444431 134567888774
No 33
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.15 E-value=8.3e-06 Score=72.18 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=34.3
Q ss_pred cccccchhhHHHHHHHh-hccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKL-LCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+...+.+..++ .... ... +.|+|+.|+||||+++.++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHH
Confidence 45889988888888777 3321 223 89999999999999998876
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.14 E-value=2.8e-06 Score=74.26 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=61.7
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|++..+..+...+...... ......+.|+|++|+|||+||+.+++. ... ...+++++.......+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~-~~~~~~vll~G~~GtGKT~la~~i~~~--~~~---~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAHE--LGV---NLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH-CSCCCCCEEECCTTCCCHHHHHHHHHH--HTC---CEEEECTTTCCSHHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc-CCCCCcEEEECCCCCCHHHHHHHHHHH--hCC---CEEEEeccccCChHHHH----
Confidence 46999999888888777532110 022356889999999999999999873 222 23455554432222211
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 300 (314)
..+...+ .+..+|+||++..........+...+.
T Consensus 82 -----------------~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~ 115 (324)
T 1hqc_A 82 -----------------AILANSL-EEGDILFIDEIHRLSRQAEEHLYPAME 115 (324)
T ss_dssp -----------------HHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHH
T ss_pred -----------------HHHHHhc-cCCCEEEEECCcccccchHHHHHHHHH
Confidence 1111111 345689999997654334444555544
No 35
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.14 E-value=8.6e-06 Score=70.69 Aligned_cols=123 Identities=11% Similarity=0.185 Sum_probs=68.8
Q ss_pred ccccchhhHHHHHHHhhccCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHH
Q 048765 170 EICGRVGEKNELLSKLLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKA 246 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~ 246 (314)
.++|.+..++.+...+..... ........+.++|++|+|||++|+.++.. ....-...+.++++....... .
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~~-~-- 92 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA-V-- 92 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTTH-H--
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeeccccccccc-H--
Confidence 478888888887777654311 01123468899999999999999999873 322223355666654332211 1
Q ss_pred HHHHhcCCCCCC--CcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhcc
Q 048765 247 MVEALDGHESHL--GEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKN 301 (314)
Q Consensus 247 i~~~~~~~~~~~--~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 301 (314)
...++...... .....+...+. .....+|+||++..........|...+..
T Consensus 93 -~~l~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 93 -SRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDD 145 (311)
T ss_dssp -HHHHCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred -HHhcCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhc
Confidence 11122211110 00011222221 23457999999987765556667766643
No 36
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.12 E-value=9.1e-06 Score=74.32 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=59.0
Q ss_pred cccccchhhH---HHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEK---NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..+ ..|...+... ....+.|+|++|+||||||+.+++ .....| ..++... .....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~--~~~~~f---~~l~a~~-~~~~~--- 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIAR--YANADV---ERISAVT-SGVKE--- 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHH--HTTCEE---EEEETTT-CCHHH---
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHH--HhCCCe---EEEEecc-CCHHH---
Confidence 4688887766 5666666543 346789999999999999999987 333333 1222221 11111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHH-HccCceEEEEEeccccCCccCHHhHHHhhcc
Q 048765 246 AMVEALDGHESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWDGNYVKWEPFYHCLKN 301 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 301 (314)
.......... ...+++.+|+||++........+.|...+..
T Consensus 91 ---------------ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~ 132 (447)
T 3pvs_A 91 ---------------IREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED 132 (447)
T ss_dssp ---------------HHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT
T ss_pred ---------------HHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc
Confidence 1111111111 1246788999999987655556667776764
No 37
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.12 E-value=9.3e-06 Score=68.58 Aligned_cols=50 Identities=22% Similarity=0.165 Sum_probs=33.6
Q ss_pred cccccchhhHHHHHHHhh---ccCcC---CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLL---CESSE---QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~---~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|.+...+.+.+++. ....- .......+.|+|++|+|||+||+.+++
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 468888877766655432 21100 012345678999999999999999987
No 38
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.11 E-value=1.3e-05 Score=70.66 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=69.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCc-eeEEEEcCccccHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFD-KILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~~~~~i 247 (314)
+.++|.+..++.|...+.... ...+.++|+.|+||||+|+.++.... ...+. ....++.+.......+ +.+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 457888888888887776432 22388999999999999999987321 11111 1223333332222211 111
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEec
Q 048765 248 VEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
+..+.... ..+.+.+-++|+|++........+.|...+.......++|++|
T Consensus 97 i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 97 IKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp HHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred HHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 11111000 0012346789999997665445666777776555566666665
No 39
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.10 E-value=2.7e-06 Score=65.81 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=50.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGK 275 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~k 275 (314)
-..+.|+|+.|+|||||++.++...... . ...++++....... .. ..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~~~~~~-----------------------------~~-~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAASMPLT-----------------------------DA-AFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETTTSCCC-----------------------------GG-GGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHHHhhHH-----------------------------HH-HhC
Confidence 3578999999999999999998743321 1 12566665432211 11 224
Q ss_pred eEEEEEeccccCCccCHHhHHHhhccC-CCCc-eEEEecc
Q 048765 276 SFLLVLDDVWDGNYVKWEPFYHCLKNG-LHGS-KILVTTR 313 (314)
Q Consensus 276 r~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~iivTtR 313 (314)
.-+|||||+...+...-+.+...+... ..|. .||+||+
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 568899998654322233344444321 2233 4888876
No 40
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.09 E-value=3.7e-05 Score=68.34 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=34.9
Q ss_pred cccccchhhHHH---HHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNE---LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.++|++...+. +...+.... ...+.+.|+|++|+|||+||+.++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 569999887665 444444322 22368899999999999999999873
No 41
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=2.8e-05 Score=67.46 Aligned_cols=116 Identities=12% Similarity=-0.036 Sum_probs=72.3
Q ss_pred chhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHh-hh-hcCceeEEEEcCc-cccHHHHHHHHHHH
Q 048765 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEE-VI-RKFDKILWVCVSE-TFEEFRVAKAMVEA 250 (314)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~-~~-~~F~~~~wv~~~~-~~~~~~~~~~i~~~ 250 (314)
.++.++.|...+... +.....++|++|+|||++|+.+.+... .. .|.+ ..+++.+. ...... .+.+.+.
T Consensus 2 ~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 2 AKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp --CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHHH
Confidence 344556666666542 257888999999999999999976311 11 2333 34555443 233322 2334444
Q ss_pred hcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 251 LDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
+...+ ..+++-++|+|++...+....+.|...+...++.+.+|++|.
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~ 120 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTR 120 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEES
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 32211 135678999999988766677888888877667778887764
No 42
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.06 E-value=2.2e-05 Score=69.01 Aligned_cols=103 Identities=19% Similarity=0.202 Sum_probs=62.6
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
+.++|++..++.+..++..... .......+.|+|++|+|||+||+.++. ..... .+.++++.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~--~~~~~---~~~~~~~~~~~~~~------ 96 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY--EMSAN---IKTTAAPMIEKSGD------ 96 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH--HTTCC---EEEEEGGGCCSHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH--HhCCC---eEEecchhccchhH------
Confidence 5699999999998888864311 012345688999999999999999976 32222 23344432211111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 300 (314)
....+.. ..+..+|+||++..........|...+.
T Consensus 97 ---------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~ 131 (338)
T 3pfi_A 97 ---------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAME 131 (338)
T ss_dssp ---------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHH
T ss_pred ---------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHH
Confidence 1111111 2456799999998765444455655554
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.05 E-value=1.5e-05 Score=67.86 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=32.6
Q ss_pred ccccchhhHHHHHH-------HhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 170 EICGRVGEKNELLS-------KLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 170 ~~vgr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.++|....++.++. .+.... ......+.|+|++|+|||+||+.+++.
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46666666555554 332111 145678899999999999999999873
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.04 E-value=3.6e-05 Score=67.32 Aligned_cols=50 Identities=26% Similarity=0.363 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHHHhhcc---C---cCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCE---S---SEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+..++.|.+.+... . .......+.+.++|++|+|||+||+.+++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 56899999888888776210 0 00112346788999999999999999987
No 45
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.02 E-value=7.8e-06 Score=69.40 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=66.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
..++|....+..+.+.+..-. .....+.|+|.+|+|||+||+.+++.. ...-...+.++++... . ..+...+
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~~--~~~~~~~~~v~~~~~~-~-~~~~~~l 77 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYLS--SRWQGPFISLNCAALN-E-NLLDSEL 77 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHTS--TTTTSCEEEEEGGGSC-H-HHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhc--CccCCCeEEEecCCCC-h-hHHHHHh
Confidence 357899888888877665422 122457799999999999999998632 1111234566766542 1 2211111
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhccC-----------CCCceEEEecc
Q 048765 249 EALDGHESHLGEFQSLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKNG-----------LHGSKILVTTR 313 (314)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR 313 (314)
++.......... ......+ ....-+|+||++..........|...+..+ ....+||.||.
T Consensus 78 --~g~~~~~~~g~~---~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn 149 (265)
T 2bjv_A 78 --FGHEAGAFTGAQ---KRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATN 149 (265)
T ss_dssp --HCCC------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEES
T ss_pred --cCCccccccccc---ccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecC
Confidence 111100000000 0000011 123458999999876544445566555432 12356777764
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=2.7e-05 Score=72.67 Aligned_cols=134 Identities=20% Similarity=0.244 Sum_probs=73.4
Q ss_pred cccccchhhHHHHHHHhhccCcC-----------CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc
Q 048765 169 EEICGRVGEKNELLSKLLCESSE-----------QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET 237 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~-----------~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 237 (314)
..++|++..++.|..++...... .....+.+.|+|++|+|||+||+.+++.. .+ ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 56999999999999998752100 00234688999999999999999998732 12 3455666654
Q ss_pred ccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCcc---CHHhHHHhhccCCCCceEEEec
Q 048765 238 FEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYV---KWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 238 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~iivTt 312 (314)
.... +....+...........-...... .....+++.+|+||++...... .+..|...+... +..||+++
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~ 186 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILIC 186 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEE
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEE
Confidence 4433 222222222111000000000000 0012467889999999764322 235555555432 33455554
No 47
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.97 E-value=7.3e-05 Score=65.72 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=65.2
Q ss_pred hhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhh--------------------hcCceeEEEEc
Q 048765 175 VGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVI--------------------RKFDKILWVCV 234 (314)
Q Consensus 175 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~--------------------~~F~~~~wv~~ 234 (314)
++..+.+...+... .-...+.++|+.|+|||++|+.+.....-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 34455666666542 224578899999999999999887632100 1122 122222
Q ss_pred C---ccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEe
Q 048765 235 S---ETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVT 311 (314)
Q Consensus 235 ~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivT 311 (314)
. ....... .+.+.+.+...+ ..+++-++|||++...+....+.|...+.....+..+|++
T Consensus 82 ~~~~~~~~i~~-ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~ 144 (334)
T 1a5t_A 82 EKGKNTLGVDA-VREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLA 144 (334)
T ss_dssp CTTCSSBCHHH-HHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred cccCCCCCHHH-HHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 1 1111111 112222211100 1356789999999887655667788888766666777777
Q ss_pred cc
Q 048765 312 TR 313 (314)
Q Consensus 312 tR 313 (314)
|.
T Consensus 145 t~ 146 (334)
T 1a5t_A 145 TR 146 (334)
T ss_dssp ES
T ss_pred eC
Confidence 64
No 48
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.94 E-value=6.6e-05 Score=61.43 Aligned_cols=86 Identities=21% Similarity=0.193 Sum_probs=54.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcC-----------C-CCCCCcHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDG-----------H-ESHLGEFQ 262 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~-----------~-~~~~~~~~ 262 (314)
.-.++.|+|.+|+|||||+..++. ..-..++|++....++...+.. +.+.++. . .....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 345899999999999999999876 1235688888776555554433 3332211 1 11222334
Q ss_pred HHHHHHHHHccCceEEEEEecccc
Q 048765 263 SLLRHIYESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 263 ~~~~~l~~~L~~kr~LlVlDdv~~ 286 (314)
.....+...+..+.-+||||.+-.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 455556566544678999999854
No 49
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.89 E-value=4e-05 Score=75.92 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=37.8
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.++||+.++..++..|.... ...+.++|++|+|||+||+.++..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999986533 334689999999999999999874
No 50
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.87 E-value=9.2e-06 Score=70.52 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=42.0
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSET 237 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 237 (314)
+.++|....+..+.+.+..-. .....+.|+|.+|+|||++|+.+++.. ...-...+.++++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~~--~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHACS--ARSDRPLVTLNCAAL 64 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHHS--SCSSSCCCEEECSSC
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHhC--cccCCCeEEEeCCCC
Confidence 358899888888888776533 123457799999999999999997632 111122345666543
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.83 E-value=9e-05 Score=64.12 Aligned_cols=50 Identities=28% Similarity=0.214 Sum_probs=35.9
Q ss_pred cccccchhhHHHHHHHhhccCc-------CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESS-------EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+..++.|.+.+...-. ..-...+.+.|+|++|+|||+||+.+++
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHH
Confidence 4688988888877776542100 0012346788999999999999999987
No 52
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.82 E-value=2.2e-05 Score=68.21 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=33.9
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV 234 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~ 234 (314)
....+.+++..... .....+.|+|++|+|||+||+.+++.... .....+.++++
T Consensus 136 ~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred HHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 44455556654221 12467889999999999999999884321 33334555654
No 53
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.75 E-value=9e-05 Score=64.00 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=36.2
Q ss_pred cccccchhhHHHHHHHhhcc--CcC------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCE--SSE------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|.+..++.+...+... ... .......+.++|++|+|||++|+.++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45899999888888777541 000 002245678999999999999999987
No 54
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.75 E-value=9.5e-05 Score=65.54 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=36.4
Q ss_pred cccccchhhHHHHHHHhhcc----Cc--CCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCE----SS--EQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++|.+..++.|.+.+... .. ......+-+.|+|++|+|||+||+.+++.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46899998888888776311 00 01122356789999999999999999873
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.69 E-value=4.5e-05 Score=74.59 Aligned_cols=124 Identities=14% Similarity=0.232 Sum_probs=74.0
Q ss_pred cccccchhhHHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+...+...... .......+.++|++|+|||+||+.++.. ....-...+.++++.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccccc---
Confidence 46899999888888777643211 1123447899999999999999999873 322233456677655322100
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccC-----------CCCceEEEecc
Q 048765 246 AMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG-----------LHGSKILVTTR 313 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~iivTtR 313 (314)
.....+...+. .....+|+||++..........|...+..+ .....||+||.
T Consensus 566 -------------~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 566 -------------TSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------CC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------cccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00011111111 223459999999877655666677666542 12357777774
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.67 E-value=0.0001 Score=68.12 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=36.6
Q ss_pred cccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+..++.|.+++...-.. ......-+.|+|++|+|||+||+.+++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHH
Confidence 46899999998888876532000 012345688999999999999999976
No 57
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.65 E-value=0.00022 Score=59.27 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=54.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhh----cCceeEEEEcCccccHHHHHHHHHHHhcCCC------------CCCC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIR----KFDKILWVCVSETFEEFRVAKAMVEALDGHE------------SHLG 259 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------~~~~ 259 (314)
-.++.|+|++|+|||||+..++....... .-..++|++....+....+. .+++.++... ....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 45899999999999999998876321111 13578899887755544432 3344443221 0111
Q ss_pred cHHHHHHHHHHHc-cCceEEEEEecccc
Q 048765 260 EFQSLLRHIYESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 260 ~~~~~~~~l~~~L-~~kr~LlVlDdv~~ 286 (314)
+.......+.+.+ ..+.-+||||++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1222334455555 35778999999854
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.64 E-value=0.00011 Score=67.59 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=37.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|++.+++.+...|.... ...+.++|++|+|||+||+.++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHH
Confidence 469999999999999997532 33567999999999999999987
No 59
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.63 E-value=3.1e-05 Score=66.99 Aligned_cols=70 Identities=19% Similarity=0.259 Sum_probs=45.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEc--CccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHcc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCV--SETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIA 273 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~ 273 (314)
-+++.|+|++|+|||+||..+... ....++|+++ .+..+. . ..+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-------------~---~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-------------Y---NTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-------------C---BCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-------------h---hcCHHHHHHHHHHHHh
Confidence 356789999999999999999763 1223566766 332110 0 1345555666666665
Q ss_pred CceEEEEEeccccC
Q 048765 274 GKSFLLVLDDVWDG 287 (314)
Q Consensus 274 ~kr~LlVlDdv~~~ 287 (314)
..+ +||||++...
T Consensus 182 ~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 QHR-VIVIDSLKNV 194 (331)
T ss_dssp HCS-EEEEECCTTT
T ss_pred hCC-EEEEeccccc
Confidence 555 9999999653
No 60
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.63 E-value=8.9e-05 Score=73.44 Aligned_cols=124 Identities=15% Similarity=0.221 Sum_probs=67.3
Q ss_pred cccccchhhHHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+...+.....+ .......+.|+|+.|+|||++|+.++.. ....-...+.++++.......
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~--~~~~~~~~i~i~~~~~~~~~~--- 632 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKHA--- 632 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH--HHSSGGGEEEECTTTCCSSGG---
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhccchhH---
Confidence 35789998888887777543210 1123467889999999999999999873 221112345566654332110
Q ss_pred HHHHHhcCCCC-C--CCcHHHHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhccC
Q 048765 246 AMVEALDGHES-H--LGEFQSLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLKNG 302 (314)
Q Consensus 246 ~i~~~~~~~~~-~--~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 302 (314)
...+.+.++ . ......+...+. ....-+|+||++........+.|...+..+
T Consensus 633 --~s~l~g~~~~~~G~~~~g~l~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~ 687 (854)
T 1qvr_A 633 --VSRLIGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDEIEKAHPDVFNILLQILDDG 687 (854)
T ss_dssp --GGGC--------------CHHHHHH---HCSSEEEEESSGGGSCHHHHHHHHHHHTTT
T ss_pred --HHHHcCCCCCCcCccccchHHHHHH---hCCCeEEEEecccccCHHHHHHHHHHhccC
Confidence 011110000 0 000011222222 233469999999877655566677766543
No 61
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.63 E-value=0.00015 Score=62.49 Aligned_cols=26 Identities=31% Similarity=0.321 Sum_probs=22.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.....+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999883
No 62
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.63 E-value=0.00034 Score=60.14 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=36.7
Q ss_pred cccccchhhHHHHHHHhhccCc------CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESS------EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|.+..++.|.+.+..... .-......+.|+|++|+|||+||+.++.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 5689999988888877633100 0012346788999999999999999987
No 63
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.61 E-value=0.00016 Score=64.07 Aligned_cols=50 Identities=20% Similarity=0.198 Sum_probs=36.7
Q ss_pred cccccchhhHHHHHHHhhcc---CcC---CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCE---SSE---QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~---~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+..++.|.+.+... ... .....+.+.|+|++|+|||+||+.++.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999888888776421 000 012356788999999999999999976
No 64
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.58 E-value=0.0005 Score=60.03 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=35.4
Q ss_pred cccccchhhHHHHHHHhhc----cCc--CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLC----ESS--EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~----~~~--~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+++.|.+..++.|.+.+.. ..- ......+.+.++|++|+|||+||+.+++
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence 5688888887777765531 100 0012346788999999999999999987
No 65
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.0008 Score=60.95 Aligned_cols=97 Identities=20% Similarity=0.258 Sum_probs=55.9
Q ss_pred cccccchhhHHHHHHHhhc----cCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHH
Q 048765 169 EEICGRVGEKNELLSKLLC----ESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEF 241 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 241 (314)
+++.|-++..+.|.+.+.- .+- .+-...+-+.++|++|+|||+||+.+++ +..-+| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~--e~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA--TIGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH--HhCCCE---EEEehhhhcc--
Confidence 5677888777776655432 100 0124467888999999999999999988 333333 3344433211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEecccc
Q 048765 242 RVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWD 286 (314)
Q Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~ 286 (314)
....+....+..+... -...+++|+||+++.
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDa 285 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDA 285 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCS
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccc
Confidence 0111112222222222 245789999999964
No 66
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.57 E-value=0.0004 Score=57.14 Aligned_cols=113 Identities=18% Similarity=0.100 Sum_probs=62.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-------------------
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES------------------- 256 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------------- 256 (314)
-.++.|+|++|+|||||++.++.... ..-..+.|++... ....+...+. .++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 35889999999999999999986332 2223566776543 3334433332 3321100
Q ss_pred ----CCCcHHHHHHHHHHHc---cCceEEEEEeccccC---CccCHHhHHHhhcc--CCCCceEEEecc
Q 048765 257 ----HLGEFQSLLRHIYESI---AGKSFLLVLDDVWDG---NYVKWEPFYHCLKN--GLHGSKILVTTR 313 (314)
Q Consensus 257 ----~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~iivTtR 313 (314)
...+..++...+...+ ..+..+||||..-.. +......+...+.. ...|..||++|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h 166 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQ 166 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 0113445555554444 223349999998632 22233444444432 134677888875
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.55 E-value=0.00051 Score=67.09 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=37.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++||+.++..+.+.|.... ...+.|+|++|+|||++|+.++..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999987532 345689999999999999999873
No 68
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.50 E-value=0.00044 Score=61.98 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=37.0
Q ss_pred cccccchhhHHHHHHHhhccCcC------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+..++.|.+.+...... .......+.|+|++|+|||+||+.++.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56999999999888877321100 012246788999999999999999976
No 69
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.48 E-value=0.00029 Score=64.39 Aligned_cols=50 Identities=22% Similarity=0.324 Sum_probs=36.4
Q ss_pred cccccchhhHHHHHHHhhcc----Cc--CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCE----SS--EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|.+...+.|.+.+... .- ......+.+.|+|++|+|||+||+.+++
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 56899988888888766310 00 0012346788999999999999999987
No 70
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=0.00055 Score=57.52 Aligned_cols=50 Identities=28% Similarity=0.226 Sum_probs=32.5
Q ss_pred cccccchhhHHHHHHH---hhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSK---LLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~---L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++++|.+..++.+.+. +.....- .....+-+.|+|++|+||||||+.++.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 5688887766655443 3321100 001233578999999999999999987
No 71
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.43 E-value=0.00018 Score=59.28 Aligned_cols=111 Identities=14% Similarity=-0.050 Sum_probs=60.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES--HLGEFQSLLRHIYESI 272 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~L 272 (314)
.-.++.++|..|+||||++..+.... ..+-..++.+....+.. ....+++.++.... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 34688899999999999998887633 33333344443322211 11233333432211 1223345556666555
Q ss_pred cCce-EEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 273 AGKS-FLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 273 ~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.+.+ -+||+|.+.....+..+.+ ..+.+ .|-.||+|-+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl 124 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGL 124 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECC
T ss_pred hCCCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEec
Confidence 4444 4999999965432222233 33333 2677888765
No 72
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.40 E-value=0.00084 Score=59.22 Aligned_cols=85 Identities=21% Similarity=0.195 Sum_probs=55.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHIY 269 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 269 (314)
.-.++.|+|++|+|||||+..++.... ..-..++|++....++.. .++.++.... ...+..+....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999999987432 222457889887766654 4455543311 2234555555555
Q ss_pred HHcc-CceEEEEEecccc
Q 048765 270 ESIA-GKSFLLVLDDVWD 286 (314)
Q Consensus 270 ~~L~-~kr~LlVlDdv~~ 286 (314)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5543 5566999999843
No 73
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.40 E-value=0.0016 Score=52.11 Aligned_cols=116 Identities=17% Similarity=0.105 Sum_probs=65.9
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc---cccHHHHHHHHHHHh---cCC-CCCC-------CcHH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE---TFEEFRVAKAMVEAL---DGH-ESHL-------GEFQ 262 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~---~~~~~~~~~~i~~~~---~~~-~~~~-------~~~~ 262 (314)
..|-|++-.|.||||+|--..- +.-.+=-.+.++...+ ......++..+.-.+ +.. .-.. ....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566666677999999977655 4444444555664432 233344443331000 000 0000 1123
Q ss_pred HHHHHHHHHccC-ceEEEEEecccc---CCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 263 SLLRHIYESIAG-KSFLLVLDDVWD---GNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 263 ~~~~~l~~~L~~-kr~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
......++.+.. +-=|||||++-. ......+++...+.......-||+|+|+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ 162 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRG 162 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCC
Confidence 344556666644 445999999832 2335677888888766667779999985
No 74
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.40 E-value=0.00014 Score=63.66 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=34.6
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|++..++.+...+... ..+.++|++|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 35889988888888777642 2578999999999999999976
No 75
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.39 E-value=0.00079 Score=61.79 Aligned_cols=98 Identities=20% Similarity=0.153 Sum_probs=53.0
Q ss_pred cccccchhhHHHHHHH---hhccCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHH
Q 048765 169 EEICGRVGEKNELLSK---LLCESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFR 242 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 242 (314)
.+++|.++.++.+.+. +..... -.....+-+.|+|++|+|||+||+.++. +....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~--~~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG--EANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH--HHTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HcCCCe---eeCCHHHHHHH--
Confidence 4588887776665544 322100 0001223478999999999999999987 332222 34444332110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCceEEEEEecccc
Q 048765 243 VAKAMVEALDGHESHLGEFQSLLRHIYESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 243 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 286 (314)
+ ...........+.......+.+|+||++..
T Consensus 89 --------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 89 --------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp --------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred --------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 0 000111122223333356789999999965
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.38 E-value=0.00025 Score=69.37 Aligned_cols=121 Identities=17% Similarity=0.188 Sum_probs=67.1
Q ss_pred cccccchhhHHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHH
Q 048765 169 EEICGRVGEKNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAK 245 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~ 245 (314)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+... .. ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~--l~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH--HT---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH--hc---CCEEEEechhhcchhh---
Confidence 35788888888877766532210 1123457899999999999999999873 22 2345566654322100
Q ss_pred HHHHHhcCCCCCCCcHH-HHHHHHHHHc-cCceEEEEEeccccCCccCHHhHHHhhcc
Q 048765 246 AMVEALDGHESHLGEFQ-SLLRHIYESI-AGKSFLLVLDDVWDGNYVKWEPFYHCLKN 301 (314)
Q Consensus 246 ~i~~~~~~~~~~~~~~~-~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 301 (314)
...+-+.++ .... +....+.+.+ .....+|+||++........+.|...+..
T Consensus 530 --~~~l~g~~~--g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~ 583 (758)
T 1r6b_X 530 --VSRLIGAPP--GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDN 583 (758)
T ss_dssp --CSSSCCCCS--CSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred --HhhhcCCCC--CCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcC
Confidence 000111111 1111 0001122222 24467999999987765556667666653
No 77
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.30 E-value=0.0016 Score=57.29 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=57.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhh----cCceeEEEEcCccccHHHHHHHHHHHhcCCC------------CC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIR----KFDKILWVCVSETFEEFRVAKAMVEALDGHE------------SH 257 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------~~ 257 (314)
+.-.++.|+|.+|+|||+|+..++....... .-..++|++....++...+.. ++..++... .+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCC
Confidence 4457999999999999999998876321111 235789999988777766543 344443321 11
Q ss_pred CCcHHHHHHHHHHHcc---CceEEEEEeccc
Q 048765 258 LGEFQSLLRHIYESIA---GKSFLLVLDDVW 285 (314)
Q Consensus 258 ~~~~~~~~~~l~~~L~---~kr~LlVlDdv~ 285 (314)
......+...+...+. .+.-+||+|.+-
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~ 229 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSIM 229 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETSG
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEechH
Confidence 2223344444555553 567799999984
No 78
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.00093 Score=59.70 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=55.6
Q ss_pred cccccchhhHHHHHHHhhc----cCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHH
Q 048765 169 EEICGRVGEKNELLSKLLC----ESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEF 241 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 241 (314)
+++.|.++..+.|.+.+.- .+- .+-...+-+.++|++|+|||.||+.+++ +..-+| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc---eEEEhHHhhc--
Confidence 5677888777776655432 100 0123456788999999999999999988 443333 3444433211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHH-ccCceEEEEEecccc
Q 048765 242 RVAKAMVEALDGHESHLGEFQSLLRHIYES-IAGKSFLLVLDDVWD 286 (314)
Q Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~ 286 (314)
....+....+..+... -...+++|+||+++.
T Consensus 221 --------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 221 --------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDS 252 (405)
T ss_dssp --------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSC
T ss_pred --------------cccchHHHHHHHHHHHHHHhCCceEeeecchh
Confidence 0111112222222222 245689999999964
No 79
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00073 Score=61.13 Aligned_cols=50 Identities=20% Similarity=0.238 Sum_probs=35.9
Q ss_pred cccccchhhHHHHHHHhhc----cCc---CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLC----ESS---EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+++.|-+...+.|.+.+.. .+- .+-...+-+.++|++|+|||.||+.+++
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence 5678888887777665321 110 0124467888999999999999999988
No 80
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.26 E-value=0.00091 Score=61.31 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=34.1
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++|.+..++.+..++..-... ....+-+.++|++|+|||+||+.++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~-~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSK-KMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTT-CCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhC-CCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 56899988877544433211111 122356889999999999999999873
No 81
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.25 E-value=0.0019 Score=55.77 Aligned_cols=85 Identities=8% Similarity=0.068 Sum_probs=54.8
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHH-HHHHHHH
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSL-LRHIYES 271 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~-~~~l~~~ 271 (314)
++-|.|++|+|||||+.+++........-..++|++....++.. .+++++.... ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 68899999999999998887633211113578999988877764 3666665422 12344444 3333222
Q ss_pred --c-cCceEEEEEeccccC
Q 048765 272 --I-AGKSFLLVLDDVWDG 287 (314)
Q Consensus 272 --L-~~kr~LlVlDdv~~~ 287 (314)
+ .++.-|||+|.|-..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 3 467889999999543
No 82
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00095 Score=60.33 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=35.7
Q ss_pred cccccchhhHHHHHHHhhccC--cC-----CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCES--SE-----QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~--~~-----~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+++.|.+...+.|.+.+...- +. +-...+-+.++|++|+|||+||+.+++
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 567888888777766543210 00 123456788999999999999999988
No 83
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.24 E-value=0.00048 Score=64.57 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=33.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+.-...+.+.+....-.......++.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45788777666665443321111112456899999999999999999987
No 84
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.23 E-value=0.0011 Score=57.75 Aligned_cols=90 Identities=19% Similarity=0.231 Sum_probs=56.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhh---------cC-----ceeEEEEcCccccHHHHHHHHHHHhcCCC-----
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIR---------KF-----DKILWVCVSETFEEFRVAKAMVEALDGHE----- 255 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~~~~~i~~~~~~~~----- 255 (314)
.-.++.|+|.+|+|||+|+..++....... .. ..++|++....++...+.. +++.++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 357899999999999999998875321111 11 4789999888777766653 344443321
Q ss_pred ----CCCCcHH---HHHHHHHHHcc--CceEEEEEeccc
Q 048765 256 ----SHLGEFQ---SLLRHIYESIA--GKSFLLVLDDVW 285 (314)
Q Consensus 256 ----~~~~~~~---~~~~~l~~~L~--~kr~LlVlDdv~ 285 (314)
....+.. ++...+...+. .+.-+||+|.+-
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 0111222 34455655554 466799999983
No 85
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.19 E-value=0.00075 Score=65.94 Aligned_cols=45 Identities=22% Similarity=0.361 Sum_probs=37.9
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++|++.+++.+...|.... ..-+.++|++|+|||++|+.++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999997633 334789999999999999999873
No 86
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.19 E-value=0.0015 Score=57.56 Aligned_cols=85 Identities=18% Similarity=0.123 Sum_probs=54.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHIY 269 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 269 (314)
.-.++.|+|.+|+|||||+..++... ...-..++|++....++.. .++.++.... ...+..+....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999987632 2223468899987766543 2444443211 1224455555555
Q ss_pred HHc-cCceEEEEEecccc
Q 048765 270 ESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 270 ~~L-~~kr~LlVlDdv~~ 286 (314)
... ..+.-+||+|.+-.
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 444 34567999999854
No 87
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.19 E-value=0.0011 Score=57.84 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=56.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhh----cCceeEEEEcCccccHHHHHHHHHHHhcCCC---------CCCCcHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIR----KFDKILWVCVSETFEEFRVAKAMVEALDGHE---------SHLGEFQ 262 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~ 262 (314)
-.++.|+|.+|+|||+|+..++....... .-..++|++....++...+.. +++.++... ....+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 45899999999999999998876321111 134789999888777666543 344443321 0111222
Q ss_pred ---HHHHHHHHHcc--CceEEEEEeccc
Q 048765 263 ---SLLRHIYESIA--GKSFLLVLDDVW 285 (314)
Q Consensus 263 ---~~~~~l~~~L~--~kr~LlVlDdv~ 285 (314)
.+...+...+. .+.-+||+|.+-
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 34455555553 567899999984
No 88
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.16 E-value=0.00098 Score=55.45 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=26.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
-.+++|+|+.|+|||||++.++..... ..-...+++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~ 68 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEcc
Confidence 468999999999999999988742121 223445566543
No 89
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.15 E-value=0.0021 Score=57.66 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=53.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhh----hhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC---------CCCcH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEV----IRKFDKILWVCVSETFEEFRVAKAMVEALDGHES---------HLGEF 261 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~----~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~ 261 (314)
.-.++.|+|++|+|||||+..++-.... ...-..++|++....+....+ ..+++.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 3468999999999999999976532111 112356889988776655543 335555543210 01112
Q ss_pred ---HHHHHHHHHHc-cCceEEEEEecccc
Q 048765 262 ---QSLLRHIYESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 262 ---~~~~~~l~~~L-~~kr~LlVlDdv~~ 286 (314)
......+...+ ..+.-+||+|.+-.
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 22333344443 35678999999854
No 90
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0016 Score=59.12 Aligned_cols=97 Identities=21% Similarity=0.246 Sum_probs=55.5
Q ss_pred cccccchhhHHHHHHHhhc----cCc---CCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHH
Q 048765 169 EEICGRVGEKNELLSKLLC----ESS---EQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEF 241 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 241 (314)
+++.|.++..+.|.+.+.- .+- -+-...+-|.++|++|+|||+||+.+++ +..-+| +.++.+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 3577888777777665321 100 0124467788999999999999999988 444333 3344332111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HccCceEEEEEecccc
Q 048765 242 RVAKAMVEALDGHESHLGEFQSLLRHIYE-SIAGKSFLLVLDDVWD 286 (314)
Q Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~ 286 (314)
....+....+..+.. .-...+++|+||++..
T Consensus 282 --------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 282 --------------KYVGEGARMVRELFEMARTKKACIIFFDEIDA 313 (467)
T ss_dssp --------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTT
T ss_pred --------------ccCCHHHHHHHHHHHHHHhcCCceEeeccccc
Confidence 011112222222222 2245789999999964
No 91
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0016 Score=58.60 Aligned_cols=50 Identities=24% Similarity=0.227 Sum_probs=35.3
Q ss_pred cccccchhhHHHHHHHhhc----cCc---CCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLC----ESS---EQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+++-|.++..+.|.+.+.- .+- ..-...+-|.++|++|+|||.||+.+++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 4677888777776655422 110 0123457789999999999999999988
No 92
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.10 E-value=0.0021 Score=56.93 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHIYE 270 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~~ 270 (314)
-.++.|.|.+|+||||||..++... ...-..++|++....++.. .++.++.... ...+..++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4588889999999999999887643 2223478999988766543 2344443211 12345556666655
Q ss_pred Hcc-CceEEEEEecccc
Q 048765 271 SIA-GKSFLLVLDDVWD 286 (314)
Q Consensus 271 ~L~-~kr~LlVlDdv~~ 286 (314)
.++ .+--+||+|.+-.
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 553 4456999999843
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.09 E-value=0.0027 Score=54.51 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=27.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
-.++.|+|.+|+|||||++.++...... .-..++|++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~e 73 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAMLE 73 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeCc
Confidence 4589999999999999999987743322 11246666643
No 94
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.09 E-value=0.0023 Score=62.31 Aligned_cols=97 Identities=21% Similarity=0.207 Sum_probs=56.0
Q ss_pred cccccchhhHHHHHHHhh----ccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHH
Q 048765 169 EEICGRVGEKNELLSKLL----CESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEF 241 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~----~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 241 (314)
+++.|.+..++.|.+.+. ..+-- .....+-|.++|++|+|||+||+.+++ +...+| +.|+++.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~--elg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN--ETGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHT--TTTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH--HhCCeE---EEEEhHH-----
Confidence 457787777777666542 21110 123467789999999999999999988 333333 3444321
Q ss_pred HHHHHHHHHhcCCCCCCCcHHH-HHHHHHHHccCceEEEEEecccc
Q 048765 242 RVAKAMVEALDGHESHLGEFQS-LLRHIYESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 242 ~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~L~~kr~LlVlDdv~~ 286 (314)
+ ... ...+... +...+.......+.+|+||+++.
T Consensus 274 -l----~sk------~~gese~~lr~lF~~A~~~~PsIIfIDEiDa 308 (806)
T 3cf2_A 274 -I----MSK------LAGESESNLRKAFEEAEKNAPAIIFIDELDA 308 (806)
T ss_dssp -H----HSS------CTTHHHHHHHHHHHHHTTSCSEEEEEESGGG
T ss_pred -h----hcc------cchHHHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence 1 100 1111222 22223333356789999999965
No 95
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.06 E-value=0.0022 Score=56.65 Aligned_cols=85 Identities=18% Similarity=0.124 Sum_probs=53.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHIY 269 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 269 (314)
.-.++.|.|.+|+||||||..++... ...-..++|++....++.. .+..++.... ...+..++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 34689999999999999999887643 2223468999987766643 2344443211 1123444444444
Q ss_pred HHc-cCceEEEEEecccc
Q 048765 270 ESI-AGKSFLLVLDDVWD 286 (314)
Q Consensus 270 ~~L-~~kr~LlVlDdv~~ 286 (314)
... ..+.-+||+|.+-.
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 333 34556999999854
No 96
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.04 E-value=0.0017 Score=57.84 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+.++|++|+|||++|+.+++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999987
No 97
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.01 E-value=0.0013 Score=64.50 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=36.9
Q ss_pred cccccchhhHHHHHHHhhccC--cC-----CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCES--SE-----QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~--~~-----~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+..++.|.+++...- +. .-.....+.|+|++|+||||||+.++.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 568999988888887764310 00 113345789999999999999999976
No 98
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.95 E-value=0.00093 Score=53.98 Aligned_cols=42 Identities=26% Similarity=0.302 Sum_probs=32.5
Q ss_pred chhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
|...++.|.+.+..... ....+++|.|..|+|||||++.+..
T Consensus 3 ~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567777777765321 4567999999999999999998876
No 99
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.94 E-value=0.0062 Score=50.37 Aligned_cols=39 Identities=21% Similarity=0.246 Sum_probs=28.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE 236 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 236 (314)
-.++.|.|.+|+|||||+..++.... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 45889999999999999988765322 2234677887654
No 100
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.89 E-value=0.0045 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
...+++++|.+|+||||++..+....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999987643
No 101
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.84 E-value=0.013 Score=50.06 Aligned_cols=54 Identities=17% Similarity=0.087 Sum_probs=33.5
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhh-cCceeEEEEcCccccHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIR-KFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~-~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
....+|+|+|..|+|||||++.+........ .......|+....+-.......+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHH
Confidence 5678999999999999999998876433221 12344444554433333444444
No 102
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.81 E-value=0.01 Score=51.47 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=34.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.-.++.|.|.+|+|||||+..++.+...++ ..++|++... +...+...++
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~--s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCC--CHHHHHHHHH
Confidence 346889999999999999999876433322 5788887653 3444444444
No 103
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.80 E-value=0.00051 Score=54.83 Aligned_cols=106 Identities=13% Similarity=-0.029 Sum_probs=50.1
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC--CCCCCcHHHHHHHHHHHccC
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH--ESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~L~~ 274 (314)
.++.|+|+.|+||||++..++......+ . .+.++....+. ......+...++.. .....+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 4778999999999999966655332222 2 23333221110 00000000001100 00011111 12233344
Q ss_pred ceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 275 KSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 275 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
+.-+|+||.+...+. .|.+....+.+. |..|++|.+
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEE
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEee
Confidence 567999999976542 355544434332 667888754
No 104
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.75 E-value=0.0068 Score=53.37 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=52.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcC----ceeEEEEcCccccHHHHHHHHHHHhcCCC------------CC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKF----DKILWVCVSETFEEFRVAKAMVEALDGHE------------SH 257 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~~~~~i~~~~~~~~------------~~ 257 (314)
+.-.++.|+|+.|+|||||+..++......... ..++|++....+....+ ..+.+.++... ..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 345799999999999999999987632111111 24589987665544333 23444332210 00
Q ss_pred CCcHHHHHHHHHHHcc------CceEEEEEeccc
Q 048765 258 LGEFQSLLRHIYESIA------GKSFLLVLDDVW 285 (314)
Q Consensus 258 ~~~~~~~~~~l~~~L~------~kr~LlVlDdv~ 285 (314)
......+...+...+. .+.-+||||.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 1112233444555553 578899999984
No 105
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.72 E-value=0.0015 Score=53.03 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=28.6
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-.+.|.+.+... .....+++|+|+.|+|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555432 145689999999999999999988763
No 106
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.70 E-value=0.0067 Score=49.56 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=31.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhh---hh-cCceeEEEEcCccccHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEV---IR-KFDKILWVCVSETFEEF 241 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~---~~-~F~~~~wv~~~~~~~~~ 241 (314)
.-.+++|+|+.|+|||||++.++..... .. .....+|++....+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 3579999999999999999998652111 11 23457888765544433
No 107
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.68 E-value=0.0062 Score=51.74 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=29.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhh--------cCceeEEEEcCccc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIR--------KFDKILWVCVSETF 238 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~--------~F~~~~wv~~~~~~ 238 (314)
-.++.|+|++|+|||||+..++....... .-..++|++.....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~ 80 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP 80 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH
Confidence 35899999999999999998876322110 02346677765543
No 108
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.64 E-value=0.01 Score=51.17 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=23.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
....++.|+|++|+||||++..++...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 346899999999999999999987643
No 109
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.59 E-value=0.0013 Score=57.55 Aligned_cols=49 Identities=29% Similarity=0.397 Sum_probs=34.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|.+..++.+...+..... .+.....+.++|++|+|||||++.++.
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 4578877666666655543200 012346789999999999999999987
No 110
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.59 E-value=0.0049 Score=52.32 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=19.1
Q ss_pred EEEEccCCCChHHHHHHhhc
Q 048765 199 ISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|++|+|||||++.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 89999999999999999987
No 111
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.59 E-value=0.021 Score=51.74 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+..+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888763
No 112
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.55 E-value=0.011 Score=53.88 Aligned_cols=87 Identities=21% Similarity=0.188 Sum_probs=49.7
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc-cHHHHHHHHHHHhc--------CCCCCCCcHHH----H
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF-EEFRVAKAMVEALD--------GHESHLGEFQS----L 264 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~~~~~i~~~~~--------~~~~~~~~~~~----~ 264 (314)
.+.|+|..|+|||||++.+..+.... +-+.++++.+.+.. ...++...+...-. ....+....+. .
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~ 231 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALT 231 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHH
Confidence 58899999999999999998743322 23455667776654 33344444433200 00111111111 1
Q ss_pred HHHHHHHc---cCceEEEEEeccc
Q 048765 265 LRHIYESI---AGKSFLLVLDDVW 285 (314)
Q Consensus 265 ~~~l~~~L---~~kr~LlVlDdv~ 285 (314)
.-.+.+++ +++..||++||+-
T Consensus 232 ~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 232 GLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHH
Confidence 11233333 5899999999993
No 113
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.55 E-value=0.0098 Score=51.99 Aligned_cols=50 Identities=12% Similarity=0.021 Sum_probs=34.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
-.++.|.|.+|+|||||+..++.+... +-..++|++.. .+...+...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCC--CCHHHHHHHHHH
Confidence 458899999999999999998875433 23467777653 344555555443
No 114
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.55 E-value=0.022 Score=51.49 Aligned_cols=25 Identities=40% Similarity=0.383 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...++.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999888764
No 115
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.55 E-value=0.0049 Score=56.43 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+.|.|.+|+|||+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999988774
No 116
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.54 E-value=0.0013 Score=51.37 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=18.6
Q ss_pred EEEEEEccCCCChHHHHHHh
Q 048765 197 HIISIVGMGGIGKTTLAQLA 216 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v 216 (314)
.+|.|.|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.51 E-value=0.0016 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||++.+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999876
No 118
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.44 E-value=0.0015 Score=51.39 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 119
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.43 E-value=0.0015 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=19.6
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|+.|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 120
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.41 E-value=0.0018 Score=50.81 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999865
No 121
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.40 E-value=0.016 Score=50.29 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=30.6
Q ss_pred cccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 171 ICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 171 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|....+..+...+.... ......+++|.|+.|+|||||++.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444444444444444332 125677999999999999999998865
No 122
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.39 E-value=0.0027 Score=56.23 Aligned_cols=85 Identities=18% Similarity=0.137 Sum_probs=46.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhh-hcCceeEEEEcCccccHHHHHHHHHHHhcCC-----CCCCCcHHH----HH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVI-RKFDKILWVCVSETFEEFRVAKAMVEALDGH-----ESHLGEFQS----LL 265 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~----~~ 265 (314)
-..++|+|..|+|||||++.+.+..... ..+. ++++-+.+...... .+.+.+... .......+. ..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~---~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVT---EMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHH---HHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHH---HHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4588999999999999999887633221 1233 33566665443222 223333110 111111111 11
Q ss_pred HHHHHHc--cCceEEEEEecc
Q 048765 266 RHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 266 ~~l~~~L--~~kr~LlVlDdv 284 (314)
-.+.+++ +++..||++||+
T Consensus 250 lt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 250 IEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp HHHHHHHHHTSCEEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEEeCc
Confidence 1223344 689999999999
No 123
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.38 E-value=0.014 Score=47.74 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=53.0
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC----------CCCcHHHHHH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES----------HLGEFQSLLR 266 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~ 266 (314)
-.|.+.|.||+||||++..+...... ..++ +..+.+....+.... .++..+...+. ...++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~-V~v~d~D~q~~~~~~--al~~gl~~~~~~~~~~~~~~~~e~~l~~--- 79 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLR-QGVR-VMAGVVETHGRAETE--ALLNGLPQQPLLRTEYRGMTLEEMDLDA--- 79 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHH-TTCC-EEEEECCCTTCHHHH--HHHTTSCBCCCEEEEETTEEEEECCHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH-CCCC-EEEEEeCCCCChhHH--HHhcCccccCcceeecCCcccccccHHH---
Confidence 44778999999999999888763322 2233 444555443333321 12222221110 0012222
Q ss_pred HHHHHccCceEEEEEeccccCC------ccCHHhHHHhhccCCCCceEEEec
Q 048765 267 HIYESIAGKSFLLVLDDVWDGN------YVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 267 ~l~~~L~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
.+..+.=++|+|++-..+ ...|.++...++ .|-.|+.|+
T Consensus 80 ----~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~ 124 (228)
T 2r8r_A 80 ----LLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTV 124 (228)
T ss_dssp ----HHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEE
T ss_pred ----HHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEc
Confidence 122245699999875321 125677766554 354577665
No 124
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.38 E-value=0.0094 Score=55.01 Aligned_cols=51 Identities=27% Similarity=0.298 Sum_probs=32.3
Q ss_pred cccccchhhHHHHHH---HhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLS---KLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~---~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+++|.+..+..+.+ .+.....- .-.-.+-+.|+|++|+|||+||+.++..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 468888766555444 44321100 0011223889999999999999999873
No 125
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.37 E-value=0.0018 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|+|+.|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999875
No 126
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.36 E-value=0.0019 Score=54.50 Aligned_cols=51 Identities=24% Similarity=0.254 Sum_probs=33.6
Q ss_pred cccccchhhHHHHHHHhhccCcC------CCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 169 EEICGRVGEKNELLSKLLCESSE------QQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++|.+..++.+.+.+..-... .....+-+.|+|++|+|||+||+.++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 46889887777766654310000 0011233779999999999999999873
No 127
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.35 E-value=0.046 Score=49.47 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhchH
Q 048765 178 KNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 178 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.+.|.+.|...... .....++|.++|.+|+||||++..++...
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44566666432211 12457899999999999999998887643
No 128
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.31 E-value=0.0027 Score=51.13 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...+|.|+|+.|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999764
No 129
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.31 E-value=0.003 Score=55.95 Aligned_cols=49 Identities=24% Similarity=0.281 Sum_probs=34.7
Q ss_pred ccccchhhHHHHHHHhhcc----C-----cCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 170 EICGRVGEKNELLSKLLCE----S-----SEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~----~-----~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++|.+..++.+...+... . .........+.++|++|+|||++|+.++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4688888888877766210 0 00012345788999999999999999987
No 130
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0021 Score=50.80 Aligned_cols=23 Identities=13% Similarity=0.395 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.27 E-value=0.0018 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|+|+|+.|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 132
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.27 E-value=0.045 Score=47.45 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....++.|+|.+|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999988763
No 133
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.26 E-value=0.0026 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 134
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.25 E-value=0.023 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++.++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999888763
No 135
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.23 E-value=0.0041 Score=57.47 Aligned_cols=41 Identities=20% Similarity=0.152 Sum_probs=34.3
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++|.+..++.+...+... .-+.++|++|+|||+||+.++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHH
Confidence 4889888888888777643 3678999999999999999987
No 136
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.23 E-value=0.032 Score=47.84 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++.++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999988763
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.23 E-value=0.0027 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999996543
No 138
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.18 E-value=0.0025 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+.|.|+|+.|+||||+++.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999998865
No 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.17 E-value=0.0036 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.551 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...++.|+|+.|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999998865
No 140
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.17 E-value=0.0028 Score=50.28 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|+.|+||||+++.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999977
No 141
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.17 E-value=0.0026 Score=49.55 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=20.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|.|.|+.|+||||+++.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999866
No 142
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.16 E-value=0.0028 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999998865
No 143
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.16 E-value=0.029 Score=48.85 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....+++|+|+.|+||||+++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999998764
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.15 E-value=0.0032 Score=50.04 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++.|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999864
No 145
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.15 E-value=0.0028 Score=50.99 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+++|+|+.|+|||||++.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 146
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.11 E-value=0.003 Score=55.34 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=31.3
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|.+.....+...+.... ..-+.|+|++|+|||+||+.+++
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHH
Confidence 458898776555444443322 12388999999999999999976
No 147
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.11 E-value=0.0024 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|+.|+||||+++.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998866
No 148
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.11 E-value=0.0053 Score=51.40 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+.+...+..... ......+|.|+|++|+||||+++.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 234567899999999999999998865
No 149
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.10 E-value=0.0035 Score=50.73 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 150
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.09 E-value=0.017 Score=61.47 Aligned_cols=84 Identities=19% Similarity=0.131 Sum_probs=55.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCC-----CCCCcHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHE-----SHLGEFQSLLRHIY 269 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~l~ 269 (314)
..+++-|+|++|+|||+||.++.. +....=..++|+++...++... ++.++..- ......+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 457899999999999999999877 3333445688888887776655 34444211 01223344445555
Q ss_pred HHc-cCceEEEEEeccc
Q 048765 270 ESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 270 ~~L-~~kr~LlVlDdv~ 285 (314)
... +.+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 444 4677899999994
No 151
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.09 E-value=0.0031 Score=49.91 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.2
Q ss_pred EEEEEccCCCChHHHHHHhhchH
Q 048765 198 IISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999987643
No 152
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.09 E-value=0.0033 Score=50.98 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+++|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999998875
No 153
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.06 E-value=0.0083 Score=47.48 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....+|.|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998774
No 154
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.06 E-value=0.0036 Score=52.38 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=21.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+..+|+|.|+.|+||||+++.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.06 E-value=0.0041 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|.|.|+.|+||||+++.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 156
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.04 E-value=0.0035 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.202 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.++.|+|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999875
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.03 E-value=0.0027 Score=50.49 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 158
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.03 E-value=0.004 Score=49.93 Aligned_cols=25 Identities=44% Similarity=0.450 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+..+|+|.|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998865
No 159
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.03 E-value=0.0045 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+.++|.|.|++|+||+|.|+.+..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999998876
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.03 E-value=0.0035 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+++|+|+.|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998865
No 161
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.02 E-value=0.0035 Score=49.69 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.2
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 162
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.0039 Score=49.56 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|++|+||||+++.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 163
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.01 E-value=0.071 Score=48.89 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....+++|+|..|+|||||++.+...
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 44679999999999999999998763
No 164
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.00 E-value=0.0037 Score=49.55 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+...|.|+|+.|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 165
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.00 E-value=0.014 Score=47.03 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.8
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+|.|.|+.|+||||+++.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999763
No 166
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.00 E-value=0.09 Score=48.49 Aligned_cols=42 Identities=24% Similarity=0.223 Sum_probs=27.7
Q ss_pred HHHHHHHhhccCcC---CCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 178 KNELLSKLLCESSE---QQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 178 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+.|.+.|...... ...+..+|.|+|.+|+||||++..+...
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555442211 1145789999999999999999988753
No 167
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.99 E-value=0.0046 Score=49.95 Aligned_cols=25 Identities=40% Similarity=0.423 Sum_probs=21.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|+|+|+.|+||||+++.+..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999999998865
No 168
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.97 E-value=0.003 Score=49.76 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|+|+.|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999998865
No 169
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.95 E-value=0.0072 Score=53.00 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=30.2
Q ss_pred cchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 173 GRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 173 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.+.-.+.+++.+...-. ......|.|+|+.|+||||+++.++..
T Consensus 3 ~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 334445556655542211 134567899999999999999988763
No 170
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.95 E-value=0.0039 Score=49.98 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998876
No 171
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.94 E-value=0.0044 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|++|+||||+++.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 172
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.94 E-value=0.049 Score=49.51 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=35.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
.-.++.|.|.+|+|||+|+..++.+.... .-..++|++... +...+...++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCC--CHHHHHHHHHH
Confidence 34688999999999999999988743322 224678877653 34455555443
No 173
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.94 E-value=0.0046 Score=49.87 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 174
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.93 E-value=0.017 Score=45.85 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 175
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.93 E-value=0.0039 Score=49.66 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|+.|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 176
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.93 E-value=0.004 Score=51.85 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+++|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999873
No 177
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.92 E-value=0.0031 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.|.|.|++|+||||+++.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999875
No 178
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.91 E-value=0.012 Score=47.27 Aligned_cols=21 Identities=33% Similarity=0.278 Sum_probs=17.8
Q ss_pred EEEEEEccCCCChHHHHHHhh
Q 048765 197 HIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~ 217 (314)
.+..|.|.+|+|||++|....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHH
Confidence 467799999999999997653
No 179
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.91 E-value=0.0047 Score=54.50 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=53.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCce-eEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDK-ILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAG 274 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~ 274 (314)
-.++.|+|+.|+|||||.+.+.... ...... ++.+.-.-.+..... ..+..+... ..+.......+...|..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~--~~~~~~~i~t~ed~~e~~~~~~-~~~v~q~~~----~~~~~~~~~~La~aL~~ 195 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL--NNTKYHHILTIEDPIEFVHESK-KCLVNQREV----HRDTLGFSEALRSALRE 195 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH--HHHCCCEEEEEESSCCSCCCCS-SSEEEEEEB----TTTBSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc--cCCCCcEEEEccCcHHhhhhcc-ccceeeeee----ccccCCHHHHHHHHhhh
Confidence 3599999999999999999887632 221112 222211111100000 000000000 00111233467777777
Q ss_pred ceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 275 KSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 275 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.+=+|++|+..+. +.++.+.... ..|.-||+||.
T Consensus 196 ~PdvillDEp~d~--e~~~~~~~~~---~~G~~vl~t~H 229 (356)
T 3jvv_A 196 DPDIILVGEMRDL--ETIRLALTAA---ETGHLVFGTLH 229 (356)
T ss_dssp CCSEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEES
T ss_pred CcCEEecCCCCCH--HHHHHHHHHH---hcCCEEEEEEc
Confidence 8889999998532 3344433332 23556787775
No 180
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.91 E-value=0.0051 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...|.|.|+.|+||||+++.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999875
No 181
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.90 E-value=0.0041 Score=50.06 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998864
No 182
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.89 E-value=0.0034 Score=50.54 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998865
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.88 E-value=0.0043 Score=50.78 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999988854
No 184
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.87 E-value=0.0073 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....|.|.|++|+||||+++.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998865
No 185
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.87 E-value=0.0088 Score=46.75 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999998773
No 186
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.87 E-value=0.0034 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+|.|+|+.|+|||||++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999865
No 187
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.87 E-value=0.0049 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|.|.|++|+||||+++.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999998866
No 188
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.86 E-value=0.0089 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|.|.|++|+||||+++.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999998865
No 189
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.84 E-value=0.038 Score=50.45 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=30.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE 236 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 236 (314)
.-.++.|.|.+|+|||||+..++.+.... .-..++|++...
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM 242 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC
Confidence 34689999999999999999998754322 223678887643
No 190
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.83 E-value=0.057 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..+++++|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988764
No 191
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.82 E-value=0.022 Score=45.07 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999976
No 192
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.82 E-value=0.0059 Score=47.26 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-.+++|+|+.|+|||||++.++.-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999999988763
No 193
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.81 E-value=0.042 Score=50.82 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=34.3
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMV 248 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~ 248 (314)
.-.++.|.|.+|+|||+|+..++.+.... +-..++|++... +...+...++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~ 291 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLI 291 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHH
Confidence 34688999999999999999987643222 124678887654 3445544443
No 194
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.80 E-value=0.01 Score=55.86 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.4
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+++.|.|.+|+||||++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999988764
No 195
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.80 E-value=0.0065 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|+.|+||||+++.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 196
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.79 E-value=0.0052 Score=49.70 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998865
No 197
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.78 E-value=0.02 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..+|.|.|+.|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999773
No 198
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.77 E-value=0.0036 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.|.|++|+||||+++.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 199
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.77 E-value=0.005 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...|.|.|++|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998866
No 200
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.75 E-value=0.0062 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....+++|+|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45679999999999999999988763
No 201
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.75 E-value=0.0034 Score=49.48 Aligned_cols=23 Identities=39% Similarity=0.340 Sum_probs=16.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 202
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.74 E-value=0.0065 Score=50.55 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+++|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998866
No 203
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.71 E-value=0.0043 Score=48.38 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|+.|+||||+++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998866
No 204
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.71 E-value=0.0055 Score=48.93 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|+.|+||||+++.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 205
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.71 E-value=0.0064 Score=52.72 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=27.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
.+.+||+|.|-||+||||.+..+.-- ....-..+.-|++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecC
Confidence 45799999999999999999877653 22222345556654
No 206
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.65 E-value=0.0063 Score=47.17 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998866
No 207
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.65 E-value=0.025 Score=50.25 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.-.+++|+|+.|+|||||++.+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999998763
No 208
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.64 E-value=0.0081 Score=48.07 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..-.+|+|.|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 5578999999999999999998865
No 209
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.61 E-value=0.005 Score=50.33 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999998865
No 210
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.61 E-value=0.012 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999999998764
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.60 E-value=0.0066 Score=52.35 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...+++|+|+.|+|||||++.++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999998753
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.60 E-value=0.0077 Score=47.35 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-.+|.|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999876
No 213
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.59 E-value=0.007 Score=48.61 Aligned_cols=24 Identities=17% Similarity=0.538 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+++.|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999998875
No 214
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.58 E-value=0.051 Score=48.96 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|.|+|++|+||||+++.+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999876
No 215
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.57 E-value=0.014 Score=54.31 Aligned_cols=114 Identities=13% Similarity=-0.008 Sum_probs=57.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCC-------------C--CCCC
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGH-------------E--SHLG 259 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~-------------~--~~~~ 259 (314)
.-.++.|+|..|+|||||++.++...... -..++++...+. ...+...+ ..++.. . +..-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~--~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~L 354 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEES--RAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPESA 354 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSC--HHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGGS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCC--HHHHHHHH-HHcCCCHHHHHhCCCEEEEEeccccC
Confidence 34689999999999999999997643221 123455554332 22333222 111110 0 0011
Q ss_pred cHHHHHHH-HHHHccCceEEEEEeccccCCcc-----CHHhHHHhhcc-CCCCceEEEecc
Q 048765 260 EFQSLLRH-IYESIAGKSFLLVLDDVWDGNYV-----KWEPFYHCLKN-GLHGSKILVTTR 313 (314)
Q Consensus 260 ~~~~~~~~-l~~~L~~kr~LlVlDdv~~~~~~-----~~~~l~~~l~~-~~~gs~iivTtR 313 (314)
+..+.+.. +...+..+.-+||||-+...+.. ....+...+.. ...|..||+||.
T Consensus 355 S~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh 415 (525)
T 1tf7_A 355 GLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNT 415 (525)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 22333333 33444667789999966433322 22233332221 123666887774
No 216
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.57 E-value=0.03 Score=46.14 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=32.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAM 247 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i 247 (314)
-.++.|.|.+|+|||+|+.+++.+. ....-..++|++... +...+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHH
Confidence 4588899999999999998876532 222334566776554 344444443
No 217
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.57 E-value=0.0069 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChHHHHHHhh
Q 048765 196 LHIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~ 217 (314)
..+|+|+|+.|+||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 218
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.56 E-value=0.0043 Score=49.43 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=18.7
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|+|+.|+|||||++.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 219
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.56 E-value=0.038 Score=58.84 Aligned_cols=86 Identities=17% Similarity=0.099 Sum_probs=58.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHIY 269 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 269 (314)
.-.++.|+|++|+|||||+..++... ...-..++|++....++... ++.++.... ...+..++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45699999999999999999998743 33334789999877766532 455544321 2345566666665
Q ss_pred HHc-cCceEEEEEeccccC
Q 048765 270 ESI-AGKSFLLVLDDVWDG 287 (314)
Q Consensus 270 ~~L-~~kr~LlVlDdv~~~ 287 (314)
... +.+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 444 355679999999643
No 220
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.53 E-value=0.0064 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...|.|.|+.|+||||+++.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 221
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.51 E-value=0.0086 Score=48.65 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=28.6
Q ss_pred chhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 174 RVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 174 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..+..+.+.+.+.. .+..++.|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 34444455544432 34689999999999999999988764
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.50 E-value=0.0066 Score=50.71 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.5
Q ss_pred EEEEccCCCChHHHHHHhhch
Q 048765 199 ISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.|+|++|+|||||++.++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999873
No 223
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.50 E-value=0.0069 Score=48.91 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..+|.|.|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999773
No 224
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.50 E-value=0.04 Score=44.17 Aligned_cols=84 Identities=18% Similarity=0.191 Sum_probs=44.2
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHHHHc
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHIYESI 272 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~~~L 272 (314)
.|+|=|..|+||||.++.+++. .......+++..-+.........+.++..-...+. ...+..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~--L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY--LEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999874 33333334444434333344444444433211100 0011233445565666
Q ss_pred cCceEEEEEecc
Q 048765 273 AGKSFLLVLDDV 284 (314)
Q Consensus 273 ~~kr~LlVlDdv 284 (314)
.... .||.|--
T Consensus 80 ~~g~-~Vi~DRy 90 (197)
T 3hjn_A 80 SEGY-AVLLDRY 90 (197)
T ss_dssp TTTC-EEEEESC
T ss_pred HCCC-eEEeccc
Confidence 5443 4667764
No 225
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.50 E-value=0.0088 Score=50.94 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhh
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~ 217 (314)
....+|+|.|+.|+||||+++.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446799999999999999999886
No 226
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.49 E-value=0.0076 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.-.+++|+|+.|+|||||.+.+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3456999999999999999999876
No 227
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.48 E-value=0.0077 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.. .+++|+|+.|+|||||.+.+..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHT
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhC
Confidence 45 7899999999999999998854
No 228
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.47 E-value=0.069 Score=46.58 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=59.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-HccC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYE-SIAG 274 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~L~~ 274 (314)
.++..++|+.|.||++.+..+..... ...|+....+.+....+. +++.+.+.. -+.+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------------~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW---------------------NAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH---------------------HHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH---------------------HHHHHHhcCcCCcc
Confidence 56888999999999999988876322 223432222222222233 333333221 1356
Q ss_pred ceEEEEEecccc-CCccCHHhHHHhhccCCCCceEEEec
Q 048765 275 KSFLLVLDDVWD-GNYVKWEPFYHCLKNGLHGSKILVTT 312 (314)
Q Consensus 275 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~iivTt 312 (314)
++-++|+|++.. .....++.|..++...++++.+|++|
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~ 114 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRG 114 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEE
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEc
Confidence 677889999876 54456788888887666677777665
No 229
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.012 Score=46.49 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.....|.|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999988653
No 230
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.47 E-value=0.0093 Score=48.31 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...+|.|.|+.|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998763
No 231
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.46 E-value=0.036 Score=58.14 Aligned_cols=86 Identities=17% Similarity=0.106 Sum_probs=57.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHIY 269 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 269 (314)
.-.++.|.|.+|+||||||.+++... ...-..++|++....++.. .++.++.... ...+..++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 45689999999999999999987743 2334578999988776653 2455543311 2234555555555
Q ss_pred HHc-cCceEEEEEeccccC
Q 048765 270 ESI-AGKSFLLVLDDVWDG 287 (314)
Q Consensus 270 ~~L-~~kr~LlVlDdv~~~ 287 (314)
... ..+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 444 345669999999543
No 232
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.45 E-value=0.0094 Score=51.35 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999988764
No 233
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.44 E-value=0.071 Score=43.82 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=46.7
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhh-hhcC-ceeEEEEcCccccHHHHHHHHHHHhcCCCC---------------CC-
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEV-IRKF-DKILWVCVSETFEEFRVAKAMVEALDGHES---------------HL- 258 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------------~~- 258 (314)
..+.|+|..|+||||+.....-+... ...+ .+.+.+..........+...+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 47899999999999877655433221 2222 233333334333344455555544432210 00
Q ss_pred ----CcHHHHHHHHHHHccCceEEEEEecccc
Q 048765 259 ----GEFQSLLRHIYESIAGKSFLLVLDDVWD 286 (314)
Q Consensus 259 ----~~~~~~~~~l~~~L~~kr~LlVlDdv~~ 286 (314)
..-..+...+...+.+ --+||||++..
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTT-CCEEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcC-CcEEEEECCcc
Confidence 1224445555544433 34789999965
No 234
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.44 E-value=0.0083 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999998854
No 235
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.43 E-value=0.018 Score=50.78 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....+++|+|+.|+|||||++.++..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35679999999999999999988764
No 236
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.41 E-value=0.017 Score=50.87 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=27.3
Q ss_pred HHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+.+.+.... .+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 444555554322 4578999999999999999988865
No 237
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.39 E-value=0.0083 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...|.|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998866
No 238
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.38 E-value=0.0086 Score=49.20 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.7
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998854
No 239
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.37 E-value=0.0074 Score=48.19 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEEccCCCChHHHHHHhhchH
Q 048765 198 IISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999987644
No 240
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.36 E-value=0.0069 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...|.|.|+.|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 241
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.35 E-value=0.0089 Score=48.49 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=18.8
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 242
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.35 E-value=0.004 Score=50.39 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=19.8
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 243
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.34 E-value=0.013 Score=48.89 Aligned_cols=27 Identities=33% Similarity=0.321 Sum_probs=22.7
Q ss_pred CCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 193 QKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 193 ~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.....++.+.|.||+||||++..+...
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 355778889999999999999998753
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.34 E-value=0.011 Score=48.11 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998853
No 245
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.33 E-value=0.0081 Score=48.76 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+++|+|+.|+|||||.+.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999998764
No 246
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.32 E-value=0.049 Score=53.08 Aligned_cols=50 Identities=28% Similarity=0.242 Sum_probs=33.2
Q ss_pred cccccchhhHHHHHHHhhccCcC-------CCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSE-------QQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+.|.++..+.|.+.+.-.-.. .-...+-+.++|++|.|||.||+.+++
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 45667776666666554321100 113345578999999999999999987
No 247
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.27 E-value=0.069 Score=48.77 Aligned_cols=88 Identities=18% Similarity=0.096 Sum_probs=55.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcccc-HHHHHHHHHHHhcCC-------C--------CCCC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFE-EFRVAKAMVEALDGH-------E--------SHLG 259 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~-------~--------~~~~ 259 (314)
-.-++|+|..|+|||+|+..+.++. .+.|-+.++++-+.+..+ ..++...+...-... . +...
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 4568899999999999999887742 123557888888877554 455666665531111 0 0000
Q ss_pred c----HHHHHHHHHHHc---cCceEEEEEecc
Q 048765 260 E----FQSLLRHIYESI---AGKSFLLVLDDV 284 (314)
Q Consensus 260 ~----~~~~~~~l~~~L---~~kr~LlVlDdv 284 (314)
. .....-.+.+++ +++..||++||+
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 111223344555 468999999998
No 248
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.27 E-value=0.031 Score=45.98 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=22.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
....|.|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998743
No 249
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.26 E-value=0.0099 Score=48.24 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.6
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 250
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.24 E-value=0.012 Score=50.76 Aligned_cols=25 Identities=36% Similarity=0.372 Sum_probs=21.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+++|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998876
No 251
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.22 E-value=0.01 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998854
No 252
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.22 E-value=0.0066 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.305 Sum_probs=16.1
Q ss_pred eEEEEEEccCCCChHHHHHHhh
Q 048765 196 LHIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~ 217 (314)
-.+++|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999987
No 253
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.21 E-value=0.011 Score=50.29 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=19.7
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998753
No 254
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.21 E-value=0.015 Score=47.80 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..-.+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4457999999999999999998876
No 255
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.21 E-value=0.011 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 256
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.20 E-value=0.022 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-.+++|+|+.|+|||||.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 356999999999999999999876
No 257
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.18 E-value=0.0096 Score=50.50 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.4
Q ss_pred EEEEccCCCChHHHHHHhhch
Q 048765 199 ISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.|+|+.|+|||||++.++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 889999999999999999873
No 258
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.17 E-value=0.011 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998754
No 259
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.15 E-value=0.011 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998854
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.13 E-value=0.013 Score=48.80 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999998854
No 261
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.13 E-value=0.016 Score=46.73 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=27.6
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-+..+..++.. - ++...+.|+|++|+||||+|..+++.
T Consensus 44 f~~~l~~~~~~-i----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 44 FLGALKSFLKG-T----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHHT-C----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 35556666643 1 33457899999999999999888773
No 262
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.11 E-value=0.012 Score=49.76 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999998854
No 263
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.11 E-value=0.012 Score=49.62 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 45899999999999999998854
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.09 E-value=0.012 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=20.2
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 265
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.08 E-value=0.055 Score=43.82 Aligned_cols=108 Identities=15% Similarity=0.048 Sum_probs=49.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES--HLGEFQSLLRHIYESI 272 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~L 272 (314)
.-.+..++|..|.||||.+.......... ...+ +.+.-..+ ...-...+.+.++.... ...+.. .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~kV-li~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA-KQHA-IVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT-TCCE-EEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC-CCEE-EEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 34688899999999999997776643322 2333 33332211 11111233333322211 111111 222333
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEecc
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTR 313 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR 313 (314)
.++--+|+||.+.-.+.+..+.+ ..+.+ .|-.||+|-+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl 136 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGL 136 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEEC
T ss_pred hcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEec
Confidence 33334999999966543333333 33322 2667888865
No 266
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.08 E-value=0.01 Score=48.38 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999865
No 267
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.07 E-value=0.009 Score=49.96 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 268
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=95.07 E-value=0.061 Score=49.26 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=49.1
Q ss_pred EEEEEEccCCCChHHHH-HHhhchHhhhhcCc-eeEEEEcCcccc-HHHHHHHHHHHhcC--------CCCCCCcHHH--
Q 048765 197 HIISIVGMGGIGKTTLA-QLACNHEEVIRKFD-KILWVCVSETFE-EFRVAKAMVEALDG--------HESHLGEFQS-- 263 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~--------~~~~~~~~~~-- 263 (314)
.-++|+|..|+|||+|+ ..+.+.. .-+ .++++-+.+..+ +.++.+.+...-.. ..+.....+-
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 251 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIA 251 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHH
Confidence 46789999999999995 5676632 245 346777776543 44555555442111 0111111111
Q ss_pred --HHHHHHHHc--cCceEEEEEeccc
Q 048765 264 --LLRHIYESI--AGKSFLLVLDDVW 285 (314)
Q Consensus 264 --~~~~l~~~L--~~kr~LlVlDdv~ 285 (314)
..-.+.+++ +++..||++||+-
T Consensus 252 ~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 252 PYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 112334444 6899999999993
No 269
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.06 E-value=0.017 Score=44.58 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999875
No 270
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.06 E-value=0.013 Score=49.26 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998854
No 271
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.04 E-value=0.015 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|.|+|+.|+|||||+..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 272
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.04 E-value=0.013 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998876
No 273
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.04 E-value=0.014 Score=47.23 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|.|.|++|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 274
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.04 E-value=0.012 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.-.++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988653
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.03 E-value=0.013 Score=48.89 Aligned_cols=22 Identities=45% Similarity=0.703 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998854
No 276
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.03 E-value=0.013 Score=47.06 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.5
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998865
No 277
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.02 E-value=0.0062 Score=47.80 Aligned_cols=24 Identities=42% Similarity=0.383 Sum_probs=21.1
Q ss_pred EEEEEEccCCCChHHHHHHhhchH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.+++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999987643
No 278
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.02 E-value=0.013 Score=46.18 Aligned_cols=21 Identities=48% Similarity=0.512 Sum_probs=19.1
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-|.|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 279
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.01 E-value=0.01 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..|.|.|++|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998876
No 280
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.00 E-value=0.013 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...|.|.|+.|+||||+++.+..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 281
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.97 E-value=0.014 Score=49.36 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998876
No 282
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.97 E-value=0.18 Score=45.92 Aligned_cols=99 Identities=18% Similarity=0.139 Sum_probs=58.7
Q ss_pred HHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCcccc-HHHHHHHHHHHhcCC----
Q 048765 180 ELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFE-EFRVAKAMVEALDGH---- 254 (314)
Q Consensus 180 ~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~-~~~~~~~i~~~~~~~---- 254 (314)
+.++.|..-. +-.-++|+|..|+|||+|+..+.++. .+.+-+.++++-+.+... +.++.+.+...-...
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~ 215 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDA 215 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSS
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccC
Confidence 3455554322 34578999999999999999887742 123456678887876543 455666666542111
Q ss_pred --C--------CCCCcHH----HHHHHHHHHc---cCceEEEEEecc
Q 048765 255 --E--------SHLGEFQ----SLLRHIYESI---AGKSFLLVLDDV 284 (314)
Q Consensus 255 --~--------~~~~~~~----~~~~~l~~~L---~~kr~LlVlDdv 284 (314)
. +.....+ ...-.+.+++ +++..||++||+
T Consensus 216 ~~rtvvV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsi 262 (482)
T 2ck3_D 216 TSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNI 262 (482)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECT
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 0 0111111 1122233444 579999999998
No 283
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.95 E-value=0.014 Score=47.84 Aligned_cols=21 Identities=38% Similarity=0.428 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998866
No 284
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.95 E-value=0.013 Score=46.00 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..++.|+|+.|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999998764
No 285
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.94 E-value=0.013 Score=47.44 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=18.9
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.|.|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998866
No 286
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.94 E-value=0.014 Score=48.71 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999998864
No 287
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.93 E-value=0.014 Score=49.04 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998864
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.93 E-value=0.014 Score=49.37 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999998854
No 289
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.92 E-value=0.014 Score=48.80 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999865
No 290
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.91 E-value=0.014 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998854
No 291
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.90 E-value=0.18 Score=45.71 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=29.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
.-.++.|.|.+|+|||||+..++.+...+ -..++|++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC
Confidence 34688999999999999999988754333 2367777654
No 292
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.89 E-value=0.015 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 293
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.89 E-value=0.014 Score=46.67 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.-.++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998754
No 294
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.88 E-value=0.015 Score=49.49 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998854
No 295
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.88 E-value=0.026 Score=51.13 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=34.0
Q ss_pred cccccchhhHHHHHHHhhcc--------CcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCE--------SSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..++|.+...+.|...+... ........+-+.++|++|+|||++|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45788877777776555221 000012345688999999999999999876
No 296
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.86 E-value=0.016 Score=47.84 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|.|+.|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 297
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.85 E-value=0.018 Score=54.64 Aligned_cols=42 Identities=17% Similarity=0.292 Sum_probs=34.2
Q ss_pred cccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 169 EEICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 169 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.++|.+..++.+...+... ..+.|+|+.|+||||||+.++.
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence 56889888787777666532 3789999999999999999976
No 298
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.85 E-value=0.016 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|++|+||||+++.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998865
No 299
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.84 E-value=0.025 Score=51.18 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCChHHHHHHhhchH
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
...+|.|+|.+|+||||++..+....
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887643
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.83 E-value=0.072 Score=55.95 Aligned_cols=85 Identities=18% Similarity=0.120 Sum_probs=60.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES-----HLGEFQSLLRHI 268 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l 268 (314)
++-++|-|+|+.|+||||||.++.. +.+..=...+|++....+++.. ++.++.+.. .+..-++....+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 3457999999999999999999876 5556667899999988877764 666665421 222334344444
Q ss_pred HHHc-cCceEEEEEeccc
Q 048765 269 YESI-AGKSFLLVLDDVW 285 (314)
Q Consensus 269 ~~~L-~~kr~LlVlDdv~ 285 (314)
...+ .+.--+||+|-|-
T Consensus 1502 ~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHHTCCSEEEESCST
T ss_pred HHHHHcCCCCEEEEccHH
Confidence 4444 4667799999983
No 301
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.80 E-value=0.084 Score=43.16 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchH
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.....|.|.|+.|+||||+++.+....
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999998743
No 302
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.78 E-value=0.022 Score=44.76 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+...|+|+|.+|+|||||.+.+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 346789999999999999999876
No 303
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.78 E-value=0.04 Score=47.33 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=28.4
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
...++|+|+|-||+||||++..+..... ..-..++-|++.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEES
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCC
Confidence 4578999999999999999988876332 222346666654
No 304
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=94.76 E-value=0.1 Score=43.01 Aligned_cols=91 Identities=21% Similarity=0.163 Sum_probs=48.7
Q ss_pred EEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcC---C--------CCC-----CCcHH
Q 048765 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDG---H--------ESH-----LGEFQ 262 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~---~--------~~~-----~~~~~ 262 (314)
+.|+|+.|.|||.++..+.... . ..++++. ... .+..++.+.+.. . ... ....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P~~----~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-PTL----ALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-SSH----HHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-CCH----HHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 6789999999999998776521 1 2233332 221 233333333221 1 000 01123
Q ss_pred HHHHHHHHHccCceEEEEEeccccCCccCHHhHHHhhc
Q 048765 263 SLLRHIYESIAGKSFLLVLDDVWDGNYVKWEPFYHCLK 300 (314)
Q Consensus 263 ~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 300 (314)
.+..... .+.++--+||+|++.......+..+...++
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc
Confidence 3333222 334455699999998765556777666554
No 305
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.76 E-value=0.017 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|+|+.|+|||||++.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998865
No 306
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.75 E-value=0.019 Score=43.61 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.-|.|+|.+|+|||||++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988653
No 307
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=94.75 E-value=0.097 Score=47.85 Aligned_cols=85 Identities=22% Similarity=0.180 Sum_probs=49.0
Q ss_pred eEEEEEEccCCCChHHHH-HHhhchHhhhhcCc-eeEEEEcCcccc-HHHHHHHHHHHhcCC--------CCCCCcHHH-
Q 048765 196 LHIISIVGMGGIGKTTLA-QLACNHEEVIRKFD-KILWVCVSETFE-EFRVAKAMVEALDGH--------ESHLGEFQS- 263 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~~--------~~~~~~~~~- 263 (314)
-.-++|+|..|+|||+|+ ..+.+.. +-+ .++++-+.+..+ +.++.+.+...-... .+.....+-
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 162 GQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp TCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 346789999999999995 5666632 345 346777776543 345555554421111 111111111
Q ss_pred ---HHHHHHHHc--cCceEEEEEecc
Q 048765 264 ---LLRHIYESI--AGKSFLLVLDDV 284 (314)
Q Consensus 264 ---~~~~l~~~L--~~kr~LlVlDdv 284 (314)
..-.+.+++ +++..||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112233444 689999999998
No 308
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.73 E-value=0.019 Score=49.48 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+|.|+|+.|+|||||+..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35889999999999999998865
No 309
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.71 E-value=0.017 Score=48.86 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998763
No 310
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.71 E-value=0.016 Score=46.22 Aligned_cols=25 Identities=20% Similarity=-0.013 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhchH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
-.+..++|+.|.||||.+.......
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 4688999999999999998777644
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.70 E-value=0.084 Score=42.83 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-..|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999999774
No 312
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.61 E-value=0.018 Score=49.47 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 456899999999999999998865
No 313
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.58 E-value=0.02 Score=48.26 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999864
No 314
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.56 E-value=0.024 Score=48.66 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+|.|+|+.|+|||||+..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999998865
No 315
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.56 E-value=0.038 Score=46.44 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=27.3
Q ss_pred HHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 179 NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-+..||.... ++...+.++|++|+|||.+|..+++
T Consensus 91 ~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34666665432 3456799999999999999998876
No 316
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.55 E-value=0.018 Score=43.77 Aligned_cols=22 Identities=32% Similarity=0.622 Sum_probs=19.2
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-|.++|.+|+|||||++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988653
No 317
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.53 E-value=0.022 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+..++.|+|+.|+|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 478999999999999999999874
No 318
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.50 E-value=0.17 Score=44.79 Aligned_cols=53 Identities=19% Similarity=0.073 Sum_probs=34.0
Q ss_pred HHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCce-eEEEEcCcc
Q 048765 179 NELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDK-ILWVCVSET 237 (314)
Q Consensus 179 ~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~ 237 (314)
-+.++.|..-. +-.-+.|+|.+|+|||+|+..+.+.... .+-+. ++++-+.+.
T Consensus 163 iraID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred chhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 35666665432 3357789999999999999988874332 22232 345666654
No 319
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=94.49 E-value=0.14 Score=46.90 Aligned_cols=90 Identities=21% Similarity=0.190 Sum_probs=50.4
Q ss_pred eEEEEEEccCCCChHHHH-HHhhchHhh----hhcCc-eeEEEEcCcccc-HHHHHHHHHHHhcC--------CCCCCCc
Q 048765 196 LHIISIVGMGGIGKTTLA-QLACNHEEV----IRKFD-KILWVCVSETFE-EFRVAKAMVEALDG--------HESHLGE 260 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa-~~v~~~~~~----~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~--------~~~~~~~ 260 (314)
-.-++|+|..|+|||+|| ..+.+.... .++-+ .++++-+.+..+ +.++.+.+...-.. ..+....
T Consensus 162 GQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~ 241 (510)
T 2ck3_A 162 GQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAP 241 (510)
T ss_dssp TCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHH
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHH
Confidence 346789999999999995 566664321 12344 467777776543 34555555442110 0111111
Q ss_pred HHH----HHHHHHHHc--cCceEEEEEeccc
Q 048765 261 FQS----LLRHIYESI--AGKSFLLVLDDVW 285 (314)
Q Consensus 261 ~~~----~~~~l~~~L--~~kr~LlVlDdv~ 285 (314)
.+- ..-.+.+++ +++..||++||+-
T Consensus 242 ~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 242 LQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 111 112234444 6899999999993
No 320
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.47 E-value=0.03 Score=43.15 Aligned_cols=24 Identities=38% Similarity=0.575 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999998764
No 321
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.46 E-value=0.011 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=18.3
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+..+|+|.|..|+||||+++.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.44 E-value=0.028 Score=42.98 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||.+.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999988653
No 323
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.40 E-value=0.023 Score=46.79 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999988865
No 324
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.38 E-value=0.037 Score=49.15 Aligned_cols=25 Identities=28% Similarity=0.102 Sum_probs=21.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+...+++|+|+.|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999999875
No 325
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.35 E-value=0.045 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=22.0
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+++|+|++|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999874
No 326
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.35 E-value=0.022 Score=43.62 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.7
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-|.|+|.+|+|||||.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998865
No 327
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.33 E-value=0.024 Score=43.50 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=19.3
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
--|.|+|.+|+|||||.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3578999999999999998875
No 328
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.31 E-value=0.025 Score=43.44 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=19.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
--|.|+|.+|+|||||.+.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999998853
No 329
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.30 E-value=0.023 Score=44.73 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
--|.++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998653
No 330
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.29 E-value=0.024 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999865
No 331
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.27 E-value=0.03 Score=43.41 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+...|.|+|.+|+|||||...+..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456788999999999999998865
No 332
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.26 E-value=0.032 Score=43.69 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|.|+|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998764
No 333
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.25 E-value=0.03 Score=49.23 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+|+|+|.+|+|||||.+.+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 334
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.24 E-value=0.025 Score=43.27 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
--|.|+|.+|+|||||.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988653
No 335
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.24 E-value=0.022 Score=47.77 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+...|.|.|..|+||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 336
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.21 E-value=0.028 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367899999999999999988763
No 337
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.21 E-value=0.028 Score=50.56 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999876
No 338
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.20 E-value=0.025 Score=43.09 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
--|.|+|..|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888643
No 339
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.20 E-value=0.031 Score=43.44 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999998753
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.17 E-value=0.049 Score=42.10 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=20.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||.+.+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999988754
No 341
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.16 E-value=0.021 Score=45.74 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....++|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999988754
No 342
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.16 E-value=0.086 Score=47.61 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCeEEEEEEccCCCChHHHHHHhhc
Q 048765 193 QKGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 193 ~~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 35788999999999999999988875
No 343
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.15 E-value=0.019 Score=49.52 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999998854
No 344
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.14 E-value=0.026 Score=43.30 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456789999999999999888653
No 345
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.14 E-value=0.087 Score=43.20 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=18.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
-..|.|-|+.|+||||+++.+....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999999998743
No 346
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.12 E-value=0.028 Score=42.90 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEccCCCChHHHHHHhhch
Q 048765 199 ISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~ 219 (314)
|.++|.+|+|||||.+.+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988653
No 347
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.10 E-value=0.027 Score=49.57 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999864
No 348
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.10 E-value=0.027 Score=43.10 Aligned_cols=22 Identities=14% Similarity=0.376 Sum_probs=19.0
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-|.++|..|+|||||.+.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888653
No 349
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.09 E-value=0.027 Score=43.15 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999988654
No 350
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.08 E-value=0.042 Score=41.87 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..-|.++|.+|+|||||.+.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356789999999999999988653
No 351
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.06 E-value=0.029 Score=49.50 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 45899999999999999998854
No 352
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.06 E-value=0.027 Score=44.20 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||++.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999988653
No 353
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.05 E-value=0.37 Score=47.00 Aligned_cols=90 Identities=21% Similarity=0.198 Sum_probs=45.2
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCC--------------CC----
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHES--------------HL---- 258 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~--------------~~---- 258 (314)
.++.|+|+.|+||||++..+.............+.+......-...+...+...++.... ..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 478999999999999765554322211111233444333332333444445444432110 00
Q ss_pred -CcHHHHHHHHHH-HccCceEEEEEecccc
Q 048765 259 -GEFQSLLRHIYE-SIAGKSFLLVLDDVWD 286 (314)
Q Consensus 259 -~~~~~~~~~l~~-~L~~kr~LlVlDdv~~ 286 (314)
..-..+...+.. .+-.+--+||||++..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 012333333322 2345667999999964
No 354
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.05 E-value=0.098 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+..+++|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4568999999999999999998864
No 355
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.04 E-value=0.027 Score=44.82 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhh
Q 048765 195 GLHIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~ 217 (314)
..--|.|+|.+|+|||||.+.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999999985
No 356
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.02 E-value=0.028 Score=44.25 Aligned_cols=24 Identities=25% Similarity=0.184 Sum_probs=19.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999877553
No 357
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=94.02 E-value=0.062 Score=45.00 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=26.2
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
++|+|.|-||+||||++..+..... ..-..+.-|++.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCC
Confidence 5788889999999999988876332 222345666653
No 358
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.02 E-value=0.033 Score=43.91 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|.|+|..|+|||||.+.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998764
No 359
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.02 E-value=0.032 Score=43.79 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+..|+|+.|+|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999988743
No 360
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.01 E-value=0.04 Score=42.69 Aligned_cols=26 Identities=31% Similarity=0.510 Sum_probs=21.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....-|.|+|..|+|||||.+.+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999988654
No 361
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.01 E-value=0.028 Score=43.55 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=21.7
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...--|.|+|..|+|||||.+.+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998754
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.01 E-value=0.031 Score=45.08 Aligned_cols=26 Identities=31% Similarity=0.252 Sum_probs=21.8
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.....|.|+|.+|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999988753
No 363
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.00 E-value=0.029 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHhhch
Q 048765 198 IISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-|.|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988764
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.98 E-value=0.029 Score=43.38 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=20.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..--|.|+|.+|+|||||.+.+..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 345688999999999999998864
No 365
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.97 E-value=0.031 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998864
No 366
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=93.96 E-value=0.1 Score=49.38 Aligned_cols=47 Identities=19% Similarity=0.061 Sum_probs=29.5
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhh-hcCceeEEEEcCccccHHHH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVI-RKFDKILWVCVSETFEEFRV 243 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~~~~~~ 243 (314)
+++.|.|.+|+||||++..+....... ..-...+.+..+.......+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L 212 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARL 212 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHH
Confidence 588899999999999998776532211 11234566666554444433
No 367
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.94 E-value=0.03 Score=42.81 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|..|+|||||.+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 34678999999999999998865
No 368
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.93 E-value=0.03 Score=42.94 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
--|.|+|..|+|||||.+.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4578999999999999998864
No 369
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.93 E-value=0.091 Score=41.83 Aligned_cols=43 Identities=26% Similarity=0.169 Sum_probs=29.0
Q ss_pred EEEEEE-ccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHH
Q 048765 197 HIISIV-GMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEF 241 (314)
Q Consensus 197 ~vi~I~-G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 241 (314)
++|+|+ +-||+||||++..+..... ..-..++.+++....+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la--~~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALS--RSGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCTTCHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHH--HCCCeEEEEECCCCCCHH
Confidence 578888 6799999999988876332 223356677765444433
No 370
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.92 E-value=0.03 Score=44.12 Aligned_cols=23 Identities=30% Similarity=0.170 Sum_probs=19.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|.+|+|||||++.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999976653
No 371
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.92 E-value=0.042 Score=43.33 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|..|+|||||.+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3557889999999999999988653
No 372
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.91 E-value=0.035 Score=43.66 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|.|+|..|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999998764
No 373
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.90 E-value=0.041 Score=42.64 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...-|.|+|..|+|||||.+.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999888653
No 374
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.90 E-value=0.037 Score=44.31 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.|.|.|+.|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999998865
No 375
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.85 E-value=0.032 Score=43.99 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||++.+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3456789999999999999888653
No 376
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.84 E-value=0.13 Score=41.67 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=32.1
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
..|.+-|..|+||||+++.+...... ..+..+.+..-+......+.++.++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 47889999999999999999874332 23433344433333333444455544
No 377
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.84 E-value=0.032 Score=43.12 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|..|+|||||.+.+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3567889999999999999998653
No 378
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.84 E-value=0.071 Score=45.32 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 178 KNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 178 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.+.+.+.|..-..........|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 344555554322112245668999999999999999998753
No 379
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.83 E-value=0.039 Score=43.94 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.-|.++|.+|+|||||.+.+..+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45789999999999999998753
No 380
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.82 E-value=0.073 Score=45.20 Aligned_cols=38 Identities=29% Similarity=0.335 Sum_probs=26.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
.++|+|.|-||+||||++..+..... ..-..+.-|++.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La--~~G~rVlliD~D 39 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALA--EMGKKVMIVGCD 39 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEEC
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHH--HCCCeEEEEecC
Confidence 36888899999999999988876432 222245566653
No 381
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.82 E-value=0.13 Score=42.39 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=26.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC 233 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~ 233 (314)
...|.|.|+.|+||||+++.+...... .++..+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~r 63 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTR 63 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeec
Confidence 458899999999999999999874332 3455344444
No 382
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=93.81 E-value=0.11 Score=46.33 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=36.0
Q ss_pred cccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCc
Q 048765 171 ICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSE 236 (314)
Q Consensus 171 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 236 (314)
++|....+..+.+.+..-.. .... +.|.|..|+|||++|+.++... ...-...+-++++.
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~s--~r~~~~fv~v~~~~ 198 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKLS--DRSKEPFVALNVAS 198 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHHS--TTTTSCEEEEETTT
T ss_pred hhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHhc--CCCCCCeEEEecCC
Confidence 55555566666555443221 2233 4899999999999999987632 22223334566654
No 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.81 E-value=0.034 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 35899999999999999998864
No 384
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.81 E-value=0.034 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 35899999999999999998864
No 385
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.78 E-value=0.032 Score=44.13 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=19.5
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..|.++|.+|+|||||.+.+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3678999999999999998875
No 386
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.77 E-value=0.033 Score=43.53 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998753
No 387
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.77 E-value=0.035 Score=48.97 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999998864
No 388
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.77 E-value=0.035 Score=44.04 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=19.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|.+|+|||||.+.+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999988863
No 389
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.75 E-value=0.11 Score=46.97 Aligned_cols=85 Identities=14% Similarity=0.187 Sum_probs=49.4
Q ss_pred EEEEEccCCCChHHHHHHhhchHhhhhcCc----eeEEEEcCccc-cHHHHHHHHHHHh--cCC------CCCCCcHH--
Q 048765 198 IISIVGMGGIGKTTLAQLACNHEEVIRKFD----KILWVCVSETF-EEFRVAKAMVEAL--DGH------ESHLGEFQ-- 262 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~~-~~~~~~~~i~~~~--~~~------~~~~~~~~-- 262 (314)
-++|+|..|+|||+|+.++.+.... +.+ .++++-+.+.. .+.++...+...- ... .+.....+
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 4678999999999999988874332 223 56667676544 3445555554421 100 11111111
Q ss_pred --HHHHHHHHHc---cCceEEEEEecc
Q 048765 263 --SLLRHIYESI---AGKSFLLVLDDV 284 (314)
Q Consensus 263 --~~~~~l~~~L---~~kr~LlVlDdv 284 (314)
...-.+.+++ +++..||++||+
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1122344555 378999999999
No 390
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.73 E-value=0.065 Score=48.45 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=49.7
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhh--------hcCc-eeEEEEcCccc-cHHHHHHHHHHH--hcC------CCCCC
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVI--------RKFD-KILWVCVSETF-EEFRVAKAMVEA--LDG------HESHL 258 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~--------~~F~-~~~wv~~~~~~-~~~~~~~~i~~~--~~~------~~~~~ 258 (314)
.-++|+|..|+|||+|+..+.+..... ++-+ .++++-+.+.. .+.++...+... +.. ..+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 356788999999999999888754331 1222 56666676544 334555554432 100 01111
Q ss_pred CcHH----HHHHHHHHHc---cCceEEEEEecc
Q 048765 259 GEFQ----SLLRHIYESI---AGKSFLLVLDDV 284 (314)
Q Consensus 259 ~~~~----~~~~~l~~~L---~~kr~LlVlDdv 284 (314)
...+ ...-.+.+++ +++..||++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 1122344555 378999999999
No 391
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.71 E-value=0.036 Score=49.08 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999999864
No 392
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.70 E-value=0.047 Score=41.84 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=20.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+...|.|+|.+|+|||||...+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345688999999999999999864
No 393
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=93.70 E-value=0.044 Score=47.06 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+...|+|+|.+|+|||||.+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999998753
No 394
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.69 E-value=0.046 Score=43.17 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.....|.|+|..|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45678899999999999999998764
No 395
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.68 E-value=0.035 Score=43.53 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..--|.|+|..|+|||||++.+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhc
Confidence 355678999999999999998875
No 396
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.68 E-value=0.078 Score=48.15 Aligned_cols=88 Identities=13% Similarity=0.118 Sum_probs=50.6
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhc--CceeEEEEcCccc-cHHHHHHHHHHHhcCC--------CCCCCcHH---
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRK--FDKILWVCVSETF-EEFRVAKAMVEALDGH--------ESHLGEFQ--- 262 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~--F~~~~wv~~~~~~-~~~~~~~~i~~~~~~~--------~~~~~~~~--- 262 (314)
.-++|+|..|+|||+|+..++.+...... =+.++++-+.+.. .+.++...+...-... .+.....+
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 35567899999999999998875443221 1356677776644 3455665655431110 11111111
Q ss_pred -HHHHHHHHHc---cCceEEEEEecc
Q 048765 263 -SLLRHIYESI---AGKSFLLVLDDV 284 (314)
Q Consensus 263 -~~~~~l~~~L---~~kr~LlVlDdv 284 (314)
...-.+.+++ +++..||++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1122234444 479999999998
No 397
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.68 E-value=0.027 Score=43.73 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.++|.+|+|||+|.+.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446789999999999999988653
No 398
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.67 E-value=0.038 Score=43.11 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||.+.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4556789999999999999998753
No 399
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.67 E-value=0.034 Score=43.02 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
--|.|+|..|+|||||.+.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4678999999999999998864
No 400
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.66 E-value=0.035 Score=43.30 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|.+|+|||||.+.+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 34678999999999999988864
No 401
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.64 E-value=0.038 Score=48.94 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999998854
No 402
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.62 E-value=0.058 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred hHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhh
Q 048765 177 EKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 177 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~ 217 (314)
.++.|.+.+. -.+++++|+.|+|||||.+.+.
T Consensus 155 gi~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 155 GIDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp THHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred CHHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 3566666653 2478999999999999999987
No 403
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.62 E-value=0.032 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=18.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+ +|+|..|+|||||.+.++.
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC
T ss_pred EEE-EEECCCCCCHHHHHHHHhC
Confidence 444 8999999999999999765
No 404
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.60 E-value=0.036 Score=43.29 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|..|+|||||.+.+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999988653
No 405
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.60 E-value=0.035 Score=49.04 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998865
No 406
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.60 E-value=0.04 Score=49.18 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|+.|+|||||+..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999998865
No 407
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.59 E-value=0.11 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.110 Sum_probs=19.9
Q ss_pred CeEEEEEEccCCCChHHHHHHh
Q 048765 195 GLHIISIVGMGGIGKTTLAQLA 216 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v 216 (314)
.-.+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999988
No 408
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.59 E-value=0.24 Score=45.23 Aligned_cols=85 Identities=24% Similarity=0.224 Sum_probs=49.1
Q ss_pred EEEEEEccCCCChHHHH-HHhhchHhhhhcCc-eeEEEEcCcccc-HHHHHHHHHHHhcCC--------CCCCCcHHH--
Q 048765 197 HIISIVGMGGIGKTTLA-QLACNHEEVIRKFD-KILWVCVSETFE-EFRVAKAMVEALDGH--------ESHLGEFQS-- 263 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~~--------~~~~~~~~~-- 263 (314)
.-++|.|..|+|||+|+ ..+.+. .+-+ .++++-+.+..+ +.++...+...-... .+.....+-
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a 238 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLA 238 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHH
Confidence 46789999999999996 566652 2334 357787877543 345555544431111 111111111
Q ss_pred --HHHHHHHHc--cCceEEEEEeccc
Q 048765 264 --LLRHIYESI--AGKSFLLVLDDVW 285 (314)
Q Consensus 264 --~~~~l~~~L--~~kr~LlVlDdv~ 285 (314)
..-.+.+++ +++..||++||+-
T Consensus 239 ~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 239 PYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChH
Confidence 112233444 6899999999993
No 409
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.58 E-value=0.047 Score=47.02 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 193 QKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 193 ~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 366889999999999999999988653
No 410
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.58 E-value=0.043 Score=50.97 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...+|.++|++|+||||+++.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998763
No 411
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.58 E-value=0.086 Score=48.26 Aligned_cols=86 Identities=16% Similarity=0.132 Sum_probs=47.6
Q ss_pred eEEEEEEccCCCChHHHH-HHhhchHhhhhcCc-eeEEEEcCcccc-HHHHHHHHHHHhcC--------CCCCCCcH---
Q 048765 196 LHIISIVGMGGIGKTTLA-QLACNHEEVIRKFD-KILWVCVSETFE-EFRVAKAMVEALDG--------HESHLGEF--- 261 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa-~~v~~~~~~~~~F~-~~~wv~~~~~~~-~~~~~~~i~~~~~~--------~~~~~~~~--- 261 (314)
-.-++|+|..|+|||+|| ..+.+.. .-+ .++++-+.+..+ +.++.+.+...-.. ..+.....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 345789999999999995 5676632 234 356677776543 33444444331100 01111111
Q ss_pred -HHHHHHHHHHc--cCceEEEEEeccc
Q 048765 262 -QSLLRHIYESI--AGKSFLLVLDDVW 285 (314)
Q Consensus 262 -~~~~~~l~~~L--~~kr~LlVlDdv~ 285 (314)
....-.+.+++ +++..||++||+-
T Consensus 239 a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 239 APYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 11122233333 6899999999983
No 412
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.58 E-value=0.2 Score=40.98 Aligned_cols=104 Identities=11% Similarity=0.049 Sum_probs=50.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEE-cCccccHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHHc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVC-VSETFEEFRVAKAMVEALDGHES--HLGEFQSLLRHIYESI 272 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~-~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~L 272 (314)
-.+..++|.-|.||||-+......... ....+.++-. ...... .. +.+.++.... ...+..++.+. .
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~-~g~kvli~kp~~D~Ryg-~~----i~sr~G~~~~a~~i~~~~di~~~----~ 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQI-AQYKCLVIKYAKDTRYS-SS----FCTHDRNTMEALPACLLRDVAQE----A 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHT-TTCCEEEEEETTCCCC----------------CEEEEESSGGGGHHH----H
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH-CCCeEEEEeecCCccch-HH----HHhhcCCeeEEEecCCHHHHHHH----h
Confidence 468889999999999877655543222 2233333322 222222 33 3333322211 01111222222 2
Q ss_pred cCceEEEEEeccccCCccCHHhHHHhhccCCCCceEEEeccC
Q 048765 273 AGKSFLLVLDDVWDGNYVKWEPFYHCLKNGLHGSKILVTTRK 314 (314)
Q Consensus 273 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~iivTtR~ 314 (314)
++--+|+||++.-.. ...++...+.+ .|-.||+|-++
T Consensus 89 -~~~dvViIDEaQF~~--~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 89 -LGVAVIGIDEGQFFP--DIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp -TTCSEEEESSGGGCT--THHHHHHHHHH--TTCEEEEECCS
T ss_pred -ccCCEEEEEchhhhh--hHHHHHHHHHh--CCCEEEEEecc
Confidence 233499999996553 25556555554 46688888653
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.56 E-value=0.038 Score=43.03 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..-|.|+|..|+|||||.+.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456789999999999999988653
No 414
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.56 E-value=0.048 Score=43.63 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|..|+|||||++.+..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 45678999999999999998764
No 415
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.55 E-value=0.053 Score=44.19 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|.|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998764
No 416
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.55 E-value=0.039 Score=42.88 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|.+|+|||||.+.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999988865
No 417
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.54 E-value=0.046 Score=42.53 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+...|.|+|..|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999999874
No 418
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.54 E-value=0.039 Score=42.85 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||.+.+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999888653
No 419
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.52 E-value=0.039 Score=43.50 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346789999999999999988764
No 420
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.51 E-value=0.039 Score=43.71 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988653
No 421
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.50 E-value=0.056 Score=42.95 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...-|.|+|..|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999988643
No 422
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.50 E-value=0.04 Score=43.70 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=19.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|.+|+|||+|.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45678999999999999987655
No 423
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.49 E-value=0.04 Score=42.70 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=20.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|..|+|||||...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999988653
No 424
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.49 E-value=0.041 Score=42.81 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+..-|.|+|.+|+|||||...+..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 356788999999999999998874
No 425
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.48 E-value=0.042 Score=43.72 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999988653
No 426
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.46 E-value=0.04 Score=43.53 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998754
No 427
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.45 E-value=0.04 Score=43.90 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...-|.|+|.+|+|||||.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4567889999999999999988653
No 428
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.43 E-value=0.044 Score=43.55 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999988764
No 429
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.42 E-value=0.04 Score=43.90 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...-|.|+|.+|+|||||++.+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3567889999999999999998753
No 430
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.41 E-value=0.042 Score=43.22 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhchH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.--|.|+|..|+|||||.+.+....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999999987654
No 431
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.39 E-value=0.11 Score=45.87 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCCeEEEEEEc-cCCCChHHHHHHhhchHhhhhcCceeEEEEcC
Q 048765 193 QKGLHIISIVG-MGGIGKTTLAQLACNHEEVIRKFDKILWVCVS 235 (314)
Q Consensus 193 ~~~~~vi~I~G-~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~ 235 (314)
..+.++|+|+| -||+||||+|..++.... ..-..++.+++.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La--~~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHA--NMGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHH--HHTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHH--hCCCCEEEEECC
Confidence 35689999985 899999999988876322 222356777754
No 432
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.37 E-value=0.043 Score=43.18 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456789999999999999988753
No 433
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.36 E-value=0.041 Score=44.18 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988653
No 434
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.34 E-value=0.043 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+..+
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 435
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.34 E-value=0.042 Score=43.40 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999988653
No 436
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.33 E-value=0.031 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999998864
No 437
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.32 E-value=0.096 Score=44.02 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|.++|..|+|||||...+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998754
No 438
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.31 E-value=0.058 Score=42.94 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|..|+|||||.+.+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999988754
No 439
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.31 E-value=0.044 Score=43.26 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.0
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||.+.+...
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999988754
No 440
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.043 Score=43.36 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|.+|+|||||.+.+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45678999999999999998865
No 441
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.28 E-value=0.045 Score=43.00 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999988653
No 442
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.26 E-value=0.045 Score=43.99 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...|.|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999988653
No 443
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=93.26 E-value=0.32 Score=45.23 Aligned_cols=49 Identities=16% Similarity=0.194 Sum_probs=35.0
Q ss_pred HHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccc
Q 048765 181 LLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETF 238 (314)
Q Consensus 181 l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 238 (314)
.++.|..- .+-.-++|.|..|+|||+|+..+.+. .+-+.++++-+.+..
T Consensus 222 vID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~ 270 (600)
T 3vr4_A 222 VIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERG 270 (600)
T ss_dssp HHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECH
T ss_pred hhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccH
Confidence 45555442 23457889999999999999998763 234678888887653
No 444
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.25 E-value=0.062 Score=44.23 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|+|+|..|+|||||.+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999988753
No 445
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.25 E-value=0.23 Score=45.94 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=34.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccH-HHHHHH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEE-FRVAKA 246 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~-~~~~~~ 246 (314)
-.-++|.|..|+|||+|+..+.+. .+-+.++++-+.+..+. .+++..
T Consensus 227 Gqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 227 GGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp TCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred CCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 457899999999999999988652 23467888888876544 344444
No 446
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.24 E-value=0.04 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988754
No 447
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.24 E-value=0.048 Score=44.19 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=19.9
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|.+|+|||||.+.+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45688999999999999998863
No 448
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.22 E-value=0.056 Score=45.51 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999988653
No 449
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.21 E-value=0.16 Score=55.84 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=0.0
Q ss_pred EEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCC-------CCCCcHHHHHHHHHHH
Q 048765 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHE-------SHLGEFQSLLRHIYES 271 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~l~~~ 271 (314)
+.++|++|+|||++|+.+.. ...--..+.++++...+...+...+-..+.... ....
T Consensus 1270 vLL~GPpGtGKT~la~~~l~----~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~------------ 1333 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALR----NSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKS------------ 1333 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHH----SCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBS------------
T ss_pred EEEECCCCCCHHHHHHHHHh----cCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCC------------
Q ss_pred ccCceEEEEEeccccCCccCH
Q 048765 272 IAGKSFLLVLDDVWDGNYVKW 292 (314)
Q Consensus 272 L~~kr~LlVlDdv~~~~~~~~ 292 (314)
.+++.++++||+.-+..+.|
T Consensus 1334 -~gk~~VlFiDEinmp~~d~y 1353 (2695)
T 4akg_A 1334 -DIKNLVLFCDEINLPKLDKY 1353 (2695)
T ss_dssp -SSSCEEEEEETTTCSCCCSS
T ss_pred -CCceEEEEeccccccccccc
No 450
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.21 E-value=0.062 Score=41.97 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhchH
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNHE 220 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~~ 220 (314)
.--|.|+|.+|+|||||.+.+....
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999987543
No 451
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.20 E-value=0.047 Score=42.89 Aligned_cols=24 Identities=29% Similarity=0.513 Sum_probs=20.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..--|.|+|..|+|||||.+.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 345788999999999999998864
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.19 E-value=0.047 Score=43.00 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=21.1
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|..|+|||||.+.+..+
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3556889999999999999988753
No 453
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.15 E-value=0.047 Score=47.88 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
-.+++|+|..|+|||||.+.+...
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 454
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.13 E-value=0.049 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 45899999999999999998864
No 455
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.13 E-value=0.049 Score=43.93 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||.+.+...
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998764
No 456
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.13 E-value=0.066 Score=42.33 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45689999999999999999865
No 457
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.13 E-value=0.04 Score=48.63 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.2
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 458
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.12 E-value=0.069 Score=42.83 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=21.3
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
....+|+|+|++|+||+|+|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3467999999999999999987744
No 459
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.12 E-value=0.047 Score=42.63 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998753
No 460
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.11 E-value=0.049 Score=44.74 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=19.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-.-++|.|++|+||||+++.+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 345689999999999999998866
No 461
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.11 E-value=0.21 Score=47.60 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=39.6
Q ss_pred hhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHH
Q 048765 176 GEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVE 249 (314)
Q Consensus 176 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~ 249 (314)
.+.+.+...|... .+..|+||+|+|||+.+..+.... +.. ...+.++......+..++..+..
T Consensus 193 ~Q~~AV~~al~~~--------~~~lI~GPPGTGKT~ti~~~I~~l-~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 193 SQKEAVLFALSQK--------ELAIIHGPPGTGKTTTVVEIILQA-VKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HHHHHHHHHHHCS--------SEEEEECCTTSCHHHHHHHHHHHH-HHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--------CceEEECCCCCCHHHHHHHHHHHH-HhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 3445555555432 266799999999998765544321 222 34677777777777777776653
No 462
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.10 E-value=0.081 Score=41.63 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 446789999999999999988653
No 463
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.10 E-value=0.11 Score=43.46 Aligned_cols=25 Identities=20% Similarity=0.434 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.-.|.|+|..|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998754
No 464
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.10 E-value=0.044 Score=47.75 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=42.4
Q ss_pred EEEEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHccCce
Q 048765 197 HIISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFRVAKAMVEALDGHESHLGEFQSLLRHIYESIAGKS 276 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~L~~kr 276 (314)
.+++|+|+.|+|||||++.+..... .-...+.+.-......... -+.+..... .-......+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~----~~~i~~~~g---gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH----KNYTQLFFG---GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC----SSEEEEECB---TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc----hhEEEEEeC---CChhHHHHHHHHhhhCC
Confidence 4899999999999999999876321 1234455542221110000 000000000 01112334555666677
Q ss_pred EEEEEecccc
Q 048765 277 FLLVLDDVWD 286 (314)
Q Consensus 277 ~LlVlDdv~~ 286 (314)
-+|++|+.-.
T Consensus 242 ~ilildE~~~ 251 (330)
T 2pt7_A 242 DRIILGELRS 251 (330)
T ss_dssp SEEEECCCCS
T ss_pred CEEEEcCCCh
Confidence 7889999854
No 465
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.073 Score=41.70 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
+.--|.|+|..|+|||||.+.+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356788999999999999999874
No 466
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.08 E-value=0.05 Score=43.21 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..--|.|+|..|+|||||+..+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 356788999999999999998864
No 467
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.07 E-value=0.051 Score=42.74 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||.+.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356789999999999999988653
No 468
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.05 E-value=0.16 Score=40.86 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=27.9
Q ss_pred EEEEE-ccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccHHH
Q 048765 198 IISIV-GMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEEFR 242 (314)
Q Consensus 198 vi~I~-G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 242 (314)
+|+|+ +-||+||||++..+..... ..- .+.-+++....+...
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la--~~g-~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLA--LQG-ETLLIDGDPNRSATG 44 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH--TTS-CEEEEEECTTCHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHH--hcC-CEEEEECCCCCCHHH
Confidence 56665 6799999999988876332 223 567777655444443
No 469
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.05 E-value=0.041 Score=52.00 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-+.++|++|+|||+||+.++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 578999999999999999976
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.03 E-value=0.049 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=20.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999988653
No 471
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.03 E-value=0.056 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468889999999999999998764
No 472
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.02 E-value=0.049 Score=49.04 Aligned_cols=20 Identities=45% Similarity=0.594 Sum_probs=18.7
Q ss_pred EEEEccCCCChHHHHHHhhc
Q 048765 199 ISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~ 218 (314)
++|+|..|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999998865
No 473
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.02 E-value=0.029 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.+++|+|+.|+|||||.+.++.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999998864
No 474
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=92.99 E-value=0.05 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=18.2
Q ss_pred EEEEEccCCCChHHHHHHhhc
Q 048765 198 IISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 198 vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-|.|+|.+|+|||+|+..+.+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCcCHHHHHHHHHh
Confidence 367899999999999988764
No 475
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=92.98 E-value=0.056 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+++|+|+.|+|||||.+.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4789999999999999999875
No 476
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.96 E-value=0.1 Score=46.89 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
-.++.|+|+.|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998866
No 477
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.90 E-value=0.089 Score=48.58 Aligned_cols=26 Identities=12% Similarity=-0.024 Sum_probs=22.6
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhch
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
++..+|.+.|+.|+||||+++.+...
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccceEEEecccCCCCHHHHHHHHHHH
Confidence 34578999999999999999999773
No 478
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=92.88 E-value=0.11 Score=48.71 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
++..+|.|.|+.|+||||+|+.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 479
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.87 E-value=0.054 Score=43.38 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..-|.|+|..|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999988653
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.85 E-value=0.052 Score=43.40 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.--|.|+|..|+|||||...+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 45678999999999999988764
No 481
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.84 E-value=0.035 Score=43.32 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=10.8
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|..|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3556889999999999999888653
No 482
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.81 E-value=0.13 Score=46.63 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=31.5
Q ss_pred cchhhHHHHHHHhhccC-c--C--CCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 173 GRVGEKNELLSKLLCES-S--E--QQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 173 gr~~~~~~l~~~L~~~~-~--~--~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
|.++-.+.+.+.+.... . . .......++|+|.+|+|||||.+.+...
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence 44556666666664221 0 0 0234567899999999999999998764
No 483
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.78 E-value=0.18 Score=44.19 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
...+++.+.|.||+||||+|..+..
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 3467888999999999999988765
No 484
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.75 E-value=0.057 Score=42.55 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988754
No 485
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.75 E-value=0.08 Score=40.26 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.8
Q ss_pred EEEEEEccCCCChHHHHHHhh
Q 048765 197 HIISIVGMGGIGKTTLAQLAC 217 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~ 217 (314)
.+..|+|+.|+|||||...++
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578899999999999998875
No 486
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.73 E-value=0.06 Score=43.08 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhc
Q 048765 196 LHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..-|.|+|.+|+|||||...+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45788999999999999998864
No 487
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.72 E-value=0.12 Score=44.25 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCeEEEEEEccCCCChHHHHHHhhc
Q 048765 194 KGLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 194 ~~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.....|+|+|..|+|||||...+..
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHT
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHC
Confidence 4577899999999999999998865
No 488
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.68 E-value=0.064 Score=43.14 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|..|+|||||.+.+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999988753
No 489
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.68 E-value=0.2 Score=43.67 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=20.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..+++.+.|-||+||||+|..++.
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCccHHHHHHHHHH
Confidence 357788889999999999988765
No 490
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.67 E-value=0.061 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.--|.|+|.+|+|||||.+.+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346779999999999999988653
No 491
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.66 E-value=0.075 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3567899999999999999988653
No 492
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.65 E-value=0.077 Score=42.26 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
..--|.|+|.+|+|||||++.+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhh
Confidence 356788999999999999998864
No 493
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.64 E-value=0.06 Score=43.16 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=20.7
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..--|.|+|.+|+|||||+..+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999888653
No 494
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.64 E-value=0.061 Score=42.83 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCChHHHHHHhhch
Q 048765 196 LHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 196 ~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
..-|.|+|.+|+|||||...+..+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999988653
No 495
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.62 E-value=0.55 Score=48.65 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=20.9
Q ss_pred CeEEEEEEccCCCChHHHHHHhhc
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.-..++|+|+.|+|||||++.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 346899999999999999998864
No 496
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=92.59 E-value=0.11 Score=40.82 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=25.3
Q ss_pred EEEEccCCCChHHHHHHhhchHhhhhcCceeEEEEcCccccH
Q 048765 199 ISIVGMGGIGKTTLAQLACNHEEVIRKFDKILWVCVSETFEE 240 (314)
Q Consensus 199 i~I~G~~G~GKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 240 (314)
+.|+|.+|+|||++|.++... -..++|+.....++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~------~~~~~yiaT~~~~d~ 37 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD------APQVLYIATSQILDD 37 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS------CSSEEEEECCCC---
T ss_pred EEEECCCCCcHHHHHHHHHhc------CCCeEEEecCCCCCH
Confidence 679999999999999988762 134667766655543
No 497
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.59 E-value=0.043 Score=48.60 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=30.5
Q ss_pred ccccchhhHHHHHHHhhccCcCCCCCeEEEEEEccCCCChHHHHHHhhch
Q 048765 170 EICGRVGEKNELLSKLLCESSEQQKGLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 170 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
.++|....+..+...+..-. ..-..+.|.|..|+||+++|+.++..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a----~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA----KSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH----TSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhh----ccchhheEEeCCCchHHHHHHHHHHh
Confidence 46776666665555443222 11223668999999999999999763
No 498
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=92.59 E-value=0.068 Score=42.90 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=20.3
Q ss_pred EEEEEEccCCCChHHHHHHhhc
Q 048765 197 HIISIVGMGGIGKTTLAQLACN 218 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~ 218 (314)
.+|+|.|+.|+||||+++.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999998866
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.57 E-value=0.23 Score=39.92 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEEEccCCCChHHHHHHhhch
Q 048765 197 HIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 197 ~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+.|+|-|..|+||||+++.+...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 46888999999999999998874
No 500
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.57 E-value=0.074 Score=45.64 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCChHHHHHHhhch
Q 048765 195 GLHIISIVGMGGIGKTTLAQLACNH 219 (314)
Q Consensus 195 ~~~vi~I~G~~G~GKTtLa~~v~~~ 219 (314)
+...|+|+|.+|+|||||.+.+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998753
Done!